diff --git a/README.md b/README.md index d38cb41..4d6d9a2 100644 --- a/README.md +++ b/README.md @@ -197,9 +197,8 @@ Format: AnnData object obs: 'cell_type', 'is_waypoint' var: 'hvg_score' - obsm: 'waypoint_distances', 'centroid_distances' layers: 'counts', 'normalized' - uns: 'dataset_id', 'dataset_name', 'dataset_url', 'dataset_reference', 'dataset_summary', 'dataset_description', 'dataset_organism', 'normalization_id', 'between_waypoint_distances', 'label_centroids', 'between_centroid_distances' + uns: 'dataset_id', 'dataset_name', 'dataset_url', 'dataset_reference', 'dataset_summary', 'dataset_description', 'dataset_organism', 'normalization_id', 'between_waypoint_distances', 'label_centroids', 'waypoint_centroid_distances', 'between_centroid_distances' @@ -212,8 +211,6 @@ Data structure: | `obs["cell_type"]` | `string` | Ground truth cell type based on a cells characteristics and function within the tissue or organism. | | `obs["is_waypoint"]` | `boolean` | Whether or not this cell is a waypoint used for some metric calculations. | | `var["hvg_score"]` | `double` | High variability gene score (normalized dispersion). The greater, the more variable. | -| `obsm["waypoint_distances"]` | `double` | Euclidean distances between all cells and waypoint cells calculated using normalized data. | -| `obsm["centroid_distances"]` | `double` | Euclidean distances between all cells and label centroids calculated using normalized data. | | `layers["counts"]` | `integer` | Raw counts. | | `layers["normalized"]` | `double` | Normalized expression values. | | `uns["dataset_id"]` | `string` | A unique identifier for the dataset. | @@ -226,6 +223,7 @@ Data structure: | `uns["normalization_id"]` | `string` | Which normalization was used. | | `uns["between_waypoint_distances"]` | `double` | Euclidean distances between waypoint cells. | | `uns["label_centroids"]` | `double` | Centroid positions of each label in the normalized expression space. | +| `uns["waypoint_centroid_distances"]` | `double` | Euclidean distances from waypoint cells to label centroids. | | `uns["between_centroid_distances"]` | `double` | Euclidean distances between label centroids. | @@ -366,8 +364,8 @@ Format: