From 376f5de3f2af436f3db0c522d3afa768faf79b8f Mon Sep 17 00:00:00 2001 From: Givanna Putri Date: Wed, 18 Dec 2024 21:49:30 +1100 Subject: [PATCH] add output adata compression to harmonypy --- src/methods/harmonypy/script.py | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/src/methods/harmonypy/script.py b/src/methods/harmonypy/script.py index eabc80e..6de8b5b 100644 --- a/src/methods/harmonypy/script.py +++ b/src/methods/harmonypy/script.py @@ -41,5 +41,4 @@ print("Write output AnnData to file", flush=True) -# TODO need compression to gz or not? -out_adata.write_h5ad(par["output"]) +out_adata.write_h5ad(par["output"], compression="gzip")