diff --git a/README.md b/README.md index 7eaa1ca..708dffb 100644 --- a/README.md +++ b/README.md @@ -20,13 +20,13 @@ For more information see [metadata](https://doi.org/10.25845/5e28f062c5097). ### Raw Video -[Raw Stero BRUVS](https://data.pawsey.org.au/public/?path=/FDFML/videos) +[Raw Stero BRUVS](https://storage.pawsey.org.au/user/m/projects/FDFML/videos) ### Crops ![Fish Crops](https://open-AIMS.github.io/ozfish/fishcrops.png?raw=true "Fish Crops") -Fish crops are from frames in videos where we had associated measurements with fish in the frames. Using the measurements we were able estimate a bounding box for the fish, the images are available [here](https://data.pawsey.org.au/public/?path=/FDFML/crops) and metadata [here](https://data.pawsey.org.au/download/FDFML/metadata/crop_metadata.csv). +Fish crops are from frames in videos where we had associated measurements with fish in the frames. Using the measurements we were able estimate a bounding box for the fish, the images are available [here](https://data.pawsey.org.au/public/?path=/FDFML/crops) and metadata [here](https://storage.pawsey.org.au/user/m/projects/FDFML/metadata/crop_metadata.csv). The fish crops have an associated metadata file which links the species, genus, family annotation to the crop. @@ -37,7 +37,7 @@ uid,file_name,family,genus,species ### Frames -Frames are extracted from the videos where we have an event measure measurement, and an associated fish label. The images are available [here](https://data.pawsey.org.au/public/?path=/FDFML/frames) and metadata [here](https://data.pawsey.org.au/download/FDFML/metadata/frame_metadata.csv). +Frames are extracted from the videos where we have an event measure measurement, and an associated fish label. The images are available [here](https://data.pawsey.org.au/public/?path=/FDFML/frames) and metadata [here](https://storage.pawsey.org.au/user/m/projects/FDFML/metadata/frame_metadata.csv). Frames have an associated metadata file which links the species, genus, family annotation fish in the frame. @@ -54,7 +54,7 @@ uid,file_name,x0,y0,x1,y1,family,genus,species ![Bounding box annotations](https://open-AIMS.github.io/ozfish/bounding-box-annotations.png?raw=true "Bounding box annotations") -Bounding box annotations were generated on the Sagemaker Ground Truth Platform, using multiple observers and combining the results. Unlike the crops, frames and videos, these annotations are fish/no-fish only and have no species/genus/family labels. The images are available [here](https://data.pawsey.org.au/public/?path=/FDFML/labelled/frames) and metadata [here](https://data.pawsey.org.au/public/?path=/FDFML/labelled/manifests). +Bounding box annotations were generated on the Sagemaker Ground Truth Platform, using multiple observers and combining the results. Unlike the crops, frames and videos, these annotations are fish/no-fish only and have no species/genus/family labels. The images are available [here](https://storage.pawsey.org.au/user/m/projects/FDFML/frames) and metadata [here](https://storage.pawsey.org.au/user/m/projects/FDFML/labelled/manifests). Bounding boxes have associated JSON metadata. @@ -102,11 +102,11 @@ Bounding box annotations were generated on the Sagemaker Ground Truth Platform, ![Bounding box tail annotations](https://open-AIMS.github.io/ozfish/fish_tails.png?raw=true "Bounding box annotations") -Bounding boxes were applied to the tails of fish (using vgg annotator) that were identifiable under a set of seven categories: 'Emarginate', 'Ornate lunated', 'Truncated', 'Lunate', 'Heterocercal', 'Forked', 'Rounded'. Tails which could not be identified were not bounding boxed or labelled. The images are available [here](https://data.pawsey.org.au/public/?path=/FDFML/labelled/frames) and metadata [here](https://data.pawsey.org.au/download/FDFML/labelled/fishtails/FishTails_via.json). +Bounding boxes were applied to the tails of fish (using vgg annotator) that were identifiable under a set of seven categories: 'Emarginate', 'Ornate lunated', 'Truncated', 'Lunate', 'Heterocercal', 'Forked', 'Rounded'. Tails which could not be identified were not bounding boxed or labelled. The images are available [here](https://storage.pawsey.org.au/user/m/projects/FDFML/labelled/frames) and metadata [here](https://storage.pawsey.org.au/user/m/projects/FDFML/labelled/fishtails/FishTails_via.json). ### Fish measurement files -These files are exports from the event measure software which give pixel locations for nose and tail of fish which were measured, and a measurement in mm for the given fish. The images are available [here](https://data.pawsey.org.au/public/?path=/FDFML/labelled/frames) and metadata [here](https://data.pawsey.org.au/public/?path=/FDFML/labelled/measurementfiles). +These files are exports from the event measure software which give pixel locations for nose and tail of fish which were measured, and a measurement in mm for the given fish. The images are available [here](https://storage.pawsey.org.au/user/m/projects/FDFML/labelled/frames) and metadata [here](https://storage.pawsey.org.au/user/m/projects/FDFML/labelled/measurementfiles). The following is an example python snippet for reading a measurement file and drawing a measurement line.