From 920d9cf21580d1c399cf7c519e1de055cb2011b2 Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon, 6 Jan 2025 15:07:49 +0000
Subject: [PATCH] [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci
---
 .isort.cfg                         |  2 +-
 napari_ome_zarr/_reader.py         |  1 +
 napari_ome_zarr/ome_zarr_reader.py | 46 ++++++++++++------------------
 3 files changed, 21 insertions(+), 28 deletions(-)

diff --git a/.isort.cfg b/.isort.cfg
index b46c472..bc7bfab 100644
--- a/.isort.cfg
+++ b/.isort.cfg
@@ -1,2 +1,2 @@
 [settings]
-known_third_party = numpy,ome_zarr,pytest,setuptools,vispy
+known_third_party = dask,numpy,ome_zarr,pytest,setuptools,vispy,zarr
diff --git a/napari_ome_zarr/_reader.py b/napari_ome_zarr/_reader.py
index 811c115..1b30f0a 100644
--- a/napari_ome_zarr/_reader.py
+++ b/napari_ome_zarr/_reader.py
@@ -8,6 +8,7 @@
 
 from .ome_zarr_reader import read_ome_zarr
 
+
 def napari_get_reader(path):
     """Returns a reader for supported paths that include IDR ID.
 
diff --git a/napari_ome_zarr/ome_zarr_reader.py b/napari_ome_zarr/ome_zarr_reader.py
index 463cf8a..5086a3f 100644
--- a/napari_ome_zarr/ome_zarr_reader.py
+++ b/napari_ome_zarr/ome_zarr_reader.py
@@ -1,31 +1,26 @@
-
-
 # zarr v3
 
-import zarr
-from zarr import Group
-from zarr.core.sync import SyncMixin
-from zarr.core.buffer import default_buffer_prototype
+from typing import Any, Dict, List, Tuple, Union
+from xml.etree import ElementTree as ET
 
 import dask.array as da
-from typing import List
+import zarr
 from vispy.color import Colormap
-from xml.etree import ElementTree as ET
-
-from typing import Any, Dict, List, Tuple, Union
+from zarr import Group
+from zarr.core.buffer import default_buffer_prototype
+from zarr.core.sync import SyncMixin
 
 LayerData = Union[Tuple[Any], Tuple[Any, Dict], Tuple[Any, Dict, str]]
 
 
-class Spec():
-
+class Spec:
     def __init__(self, group: Group):
         self.group = group
 
     @staticmethod
     def matches(group: Group) -> bool:
         return False
-    
+
     def data(self) -> List[da.core.Array] | None:
         return None
 
@@ -39,8 +34,7 @@ def children(self):
     def iter_nodes(self):
         yield self
         for child in self.children():
-            for ch in child.iter_nodes():
-                yield ch
+            yield from child.iter_nodes()
 
     def iter_data(self):
         for node in self.iter_nodes():
@@ -56,7 +50,6 @@ def get_attrs(group: Group):
 
 
 class Multiscales(Spec):
-
     @staticmethod
     def matches(group: Group) -> bool:
         return "multiscales" in Spec.get_attrs(group)
@@ -127,8 +120,8 @@ def metadata(self):
 
         return rsp
 
-class Bioformats2raw(Spec):
 
+class Bioformats2raw(Spec):
     @staticmethod
     def matches(group: Group) -> bool:
         attrs = Spec.get_attrs(group)
@@ -137,7 +130,11 @@ def matches(group: Group) -> bool:
 
     def children(self):
         # lookup children from series of OME/METADATA.xml
-        xml_data = SyncMixin()._sync(self.group.store.get("OME/METADATA.ome.xml", prototype=default_buffer_prototype()))
+        xml_data = SyncMixin()._sync(
+            self.group.store.get(
+                "OME/METADATA.ome.xml", prototype=default_buffer_prototype()
+            )
+        )
         # print("xml_data", xml_data.to_bytes())
         root = ET.fromstring(xml_data.to_bytes())
         rv = []
@@ -156,19 +153,16 @@ def children(self):
     # override to NOT yield self since node has no data
     def iter_nodes(self):
         for child in self.children():
-            for ch in child.iter_nodes():
-                yield ch
-    
+            yield from child.iter_nodes()
 
-class Plate(Spec):
 
+class Plate(Spec):
     @staticmethod
     def matches(group: Group) -> bool:
         return "plate" in Spec.get_attrs(group)
 
 
 class Label(Multiscales):
-
     @staticmethod
     def matches(group: Group) -> bool:
         # label must also be Multiscales
@@ -182,12 +176,10 @@ def metadata(self) -> Dict[str, Any] | None:
 
 
 def read_ome_zarr(url):
-
     def f(*args: Any, **kwargs: Any) -> List[LayerData]:
-
         results: List[LayerData] = list()
 
-        # TODO: handle missing file 
+        # TODO: handle missing file
         root_group = zarr.open(url)
 
         print("Root group", root_group.attrs.asdict())
@@ -214,5 +206,5 @@ def f(*args: Any, **kwargs: Any) -> List[LayerData]:
                 results.append(rv)
 
         return results
-    
+
     return f