From f97a5cfe5ba85a4433b7f422dc7390425bdde94a Mon Sep 17 00:00:00 2001 From: Arwa Ibrahim <97462656+ar-ibrahim@users.noreply.github.com> Date: Thu, 4 Apr 2024 14:21:13 +0100 Subject: [PATCH] Fix unsatisfiable class error --- .../default/chemical_role_attribute_location.tsv | 1 + .../data/default/entity_attribute_location.tsv | 1 - src/patterns/definitions.owl | 14 +++++--------- 3 files changed, 6 insertions(+), 10 deletions(-) diff --git a/src/patterns/data/default/chemical_role_attribute_location.tsv b/src/patterns/data/default/chemical_role_attribute_location.tsv index 1fdc9abe..b9585f11 100644 --- a/src/patterns/data/default/chemical_role_attribute_location.tsv +++ b/src/patterns/data/default/chemical_role_attribute_location.tsv @@ -8,3 +8,4 @@ OBA:VT0010275 milk hormone amount CHEBI:24621 hormone PATO:0000070 amount UBERON OBA:2050092 serum metabolite level CHEBI:25212 metabolite PATO:0000070 amount UBERON:0001977 blood serum OBA:2050078 blood metabolite level CHEBI:25212 metabolite PATO:0000070 amount UBERON:0000178 blood OBA:2045211 nutrient level in blood CHEBI:33284 nutrient PATO:0000070 amount UBERON:0000178 blood +OBA:2050419 level of endocrine disruptor in urine CHEBI:138015 endocrine disruptor PATO:0000070 amount UBERON:0001088 urine diff --git a/src/patterns/data/default/entity_attribute_location.tsv b/src/patterns/data/default/entity_attribute_location.tsv index ec94b4d1..7032839b 100644 --- a/src/patterns/data/default/entity_attribute_location.tsv +++ b/src/patterns/data/default/entity_attribute_location.tsv @@ -5515,4 +5515,3 @@ OBA:2050414 level of Gly-Pro in blood CHEBI:70744 Gly-Pro PATO:0000070 amount UB OBA:2050415 level of indole-3-butyric acid in blood CHEBI:33070 indole-3-butyric acid PATO:0000070 amount UBERON:0000178 blood PMID:37253714 https://orcid.org/0000-0001-6757-4744 OBA:2050416 level of Phe-Gly in blood CHEBI:73635 Phe-Gly PATO:0000070 amount UBERON:0000178 blood PMID:37253714 https://orcid.org/0000-0001-6757-4744 OBA:2050417 level of Val-Leu in blood CHEBI:75013 Val-Leu PATO:0000070 amount UBERON:0000178 blood PMID:37253714 https://orcid.org/0000-0001-6757-4744 -OBA:2050419 level of endocrine disruptor in urine CHEBI:138015 endocrine disruptor PATO:0000070 amount UBERON:0001088 urine level of endocrine disrupting chemical in urine|level of EDC in urine PMID:38150807 https://orcid.org/0000-0001-6757-4744 diff --git a/src/patterns/definitions.owl b/src/patterns/definitions.owl index c04ff25f..d7351f58 100644 --- a/src/patterns/definitions.owl +++ b/src/patterns/definitions.owl @@ -7,8 +7,8 @@ Prefix(rdfs:=) Ontology( - -Annotation(owl:versionInfo "2024-02-27") + +Annotation(owl:versionInfo "2024-04-04") Declaration(Class()) Declaration(Class()) @@ -105189,14 +105189,10 @@ EquivalentClasses( ObjectIntersectio # Class: (level of endocrine disruptor in urine) -AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute_location") "The amount of a endocrine disruptor when measured in urine.") -AnnotationAssertion( "https://orcid.org/0000-0001-6757-4744") -AnnotationAssertion( "PMID:38150807") -AnnotationAssertion( "level of EDC in urine") -AnnotationAssertion( "level of endocrine disrupting chemical in urine") -AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute_location") "urine endocrine disruptor amount") +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/chemical_role_attribute_location") "The amount of endocrine disruptor when measured in urine.") +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/chemical_role_attribute_location") "urine endocrine disruptor amount") AnnotationAssertion(rdfs:label "level of endocrine disruptor in urine") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf(ObjectIntersectionOf( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ))))) # Class: (aggressive behavior towards inanimate objects rate)