From 974ae3b37e9ecd6283fc8b2b7920405ac64d5f68 Mon Sep 17 00:00:00 2001 From: "Lars G. T. Jorgensen" Date: Tue, 20 Dec 2016 20:52:53 -0500 Subject: [PATCH] Added description of how to run poredb from Github --- README.md | 12 ++++++++++-- 1 file changed, 10 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index dcef191..28b69e7 100644 --- a/README.md +++ b/README.md @@ -4,13 +4,21 @@ Poredb is a way to manage very large Oxford Nanopore datasets on the basic princ -- track the files, rather than moving them around +## Running straight from github + + git clone https://github.com/nickloman/poredb.git + rmdir poredb/poretools + cd poredb + git clone https://github.com/arq5x/poretools + touch poretools/__init__.py + ## Usage ### Create a DB - poredb create myexperiment.db + python poredb_main.py create myexperiment.db find . -name "*.fast5" > filelist.txt - poredb import myexperiment.db filelist.txt + python poredb_main.py poredb import myexperiment.db filelist.txt ## Extract all basecalls in FASTQ format