From 7ac02b0b075e22be2eea07e571c0059a86699f0b Mon Sep 17 00:00:00 2001 From: "James A. Fellows Yates" Date: Sun, 19 Jan 2025 07:30:30 +0100 Subject: [PATCH] Apply suggestions from code review --- README.md | 1 + assets/schema_input.json | 2 +- nextflow.config | 4 ++-- nextflow_schema.json | 2 +- 4 files changed, 5 insertions(+), 4 deletions(-) diff --git a/README.md b/README.md index c5638380..c0f4000d 100644 --- a/README.md +++ b/README.md @@ -6,6 +6,7 @@ [![GitHub Actions CI Status](https://github.com/nf-core/mag/actions/workflows/ci.yml/badge.svg)](https://github.com/nf-core/mag/actions/workflows/ci.yml) [![GitHub Actions Linting Status](https://github.com/nf-core/mag/actions/workflows/linting.yml/badge.svg)](https://github.com/nf-core/mag/actions/workflows/linting.yml)[![AWS CI](https://img.shields.io/badge/CI%20tests-full%20size-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/mag/results)[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.3589527-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.3589527) [![nf-test](https://img.shields.io/badge/unit_tests-nf--test-337ab7.svg)](https://www.nf-test.com) +[![Cite Publication](https://img.shields.io/badge/Cite%20Us!-Cite%20Publication-orange)](https://doi.org/10.1093/nargab/lqac007) [![Nextflow](https://img.shields.io/badge/nextflow%20DSL2-%E2%89%A524.04.2-23aa62.svg)](https://www.nextflow.io/) [![run with conda](http://img.shields.io/badge/run%20with-conda-3EB049?labelColor=000000&logo=anaconda)](https://docs.conda.io/en/latest/) diff --git a/assets/schema_input.json b/assets/schema_input.json index 15e76aa7..01b494b5 100644 --- a/assets/schema_input.json +++ b/assets/schema_input.json @@ -1,6 +1,6 @@ { "$schema": "https://json-schema.org/draft/2020-12/schema", - "$id": "https://raw.githubusercontent.com/nf-core/mag/main/assets/schema_input.json", + "$id": "https://raw.githubusercontent.com/nf-core/mag/master/assets/schema_input.json", "title": "nf-core/mag pipeline - params.input schema", "description": "Schema for the file provided with params.input", "type": "array", diff --git a/nextflow.config b/nextflow.config index e54911c3..387fee34 100644 --- a/nextflow.config +++ b/nextflow.config @@ -453,7 +453,7 @@ manifest { homePage = 'https://github.com/nf-core/mag' description = """Assembly, binning and annotation of metagenomes""" mainScript = 'main.nf' - defaultBranch = 'main' + defaultBranch = 'master' nextflowVersion = '!>=24.04.2' version = '3.3.1dev' doi = '10.1093/nargab/lqac007' @@ -487,7 +487,7 @@ validation { https://doi.org/10.1038/s41587-020-0439-x * Software dependencies - https://github.com/nf-core/mag/blob/main/CITATIONS.md + https://github.com/nf-core/mag/blob/master/CITATIONS.md """ } summary { diff --git a/nextflow_schema.json b/nextflow_schema.json index 09d068bc..18307b05 100644 --- a/nextflow_schema.json +++ b/nextflow_schema.json @@ -1,6 +1,6 @@ { "$schema": "https://json-schema.org/draft/2020-12/schema", - "$id": "https://raw.githubusercontent.com/nf-core/mag/main/nextflow_schema.json", + "$id": "https://raw.githubusercontent.com/nf-core/mag/master/nextflow_schema.json", "title": "nf-core/mag pipeline parameters", "description": "Assembly, binning and annotation of metagenomes", "type": "object",