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nmm_mask_areas.py
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all_areas= {
"Accumbens": (23, 30),
"Amygdala": (31, 32),
"Brain Stem": (35, 35),
"Caudate": (36, 37),
"Cerebellum": (38, 41),
"Hippocampus": (47, 48),
"Parahippocampal gyrus": (170, 171),
"Pallidum": (55, 56),
"Putamen": (57, 58),
"Thalamus": (59, 60),
"CWM": (44, 45),
"ACG": (100, 101),
"Ant. Insula": (102, 103),
"Post. Insula": (172, 173),
"AOG": (104, 105),
"AG": (106, 107),
"Cuneus": (114, 115),
"Central operculum": (112, 113),
"Frontal operculum": (118, 119),
"Frontal pole": (120, 121),
"Fusiform gyrus": (122, 123),
"Temporal pole": (202, 203),
"TrIFG": (204, 205),
"TTG": (206, 207),
"Entorh. cortex": (116, 117),
"Parietal operculum": (174, 175),
"SPL": (198, 199),
"CSF": (46, 46),
"3rd Ventricle": (4, 4),
"4th Ventricle": (11, 11),
"Lateral Ventricles": (49, 52),
"Diencephalon": (61, 62),
"Vessels": (63, 64),
"Optic Chiasm": (69, 69),
"Vermal Lobules": (71, 73),
"Basal Forebrain": (75, 76),
"Calc": (108, 109),
"GRe": (124, 125),
"IOG": (128, 129),
"ITG": (132, 133),
"LiG": (134, 135),
"LOrG": (136, 137),
"MCgG": (138, 139),
"MFC": (140, 141),
"MFG": (142, 143),
"MOG": (144, 145),
"MOrG": (146, 147),
"MPoG": (148, 149),
"MPrG": (150, 151),
"MSFG": (152, 153),
"MTG": (154, 155),
"OCP": (156, 157),
"OFuG": (160, 161),
"OpIFG": (162, 163),
"OrIFG": (164, 165),
"PCgG": (166, 167),
"PCu": (168, 169),
"PoG": (176, 177),
"POrG": (178, 179),
"PP": (180, 181),
"PrG": (182, 183),
"PT": (184, 185),
"SCA": (186, 187),
"SFG": (190, 191),
"SMC": (192, 193),
"SMG": (194, 195),
"SOG": (196, 197),
"STG": (200, 201),
}
short_name_map = {
'Accumbens': 'Accumbens',
'Amygdala': 'Amygdala',
'Brain Stem': 'Brain Stem',
'Caudate': 'Caudate',
'Cerebellum': 'Cerebellum',
'Hippocampus': 'Hippocampus',
'Parahippocampal gyrus': 'Parahippocampal gyr.',
'Pallidum': 'Pallidum',
'Putamen': 'Putamen',
'Thalamus': 'Thalamus',
'Diencephalon': 'Diencephalon',
'CWM': 'Cerebral white matter',
'ACG': 'Ant. cingulate gyr.',
'Ant. Insula': 'Ant. insula',
'Post. Insula': 'Post. insula',
'AOG': 'Ant. orbital gyr.',
'AG': 'Angular gyr.',
'Cuneus': 'Cuneus',
'Central operculum': 'Central operculum',
'Frontal operculum': 'Frontal operculum',
'Frontal pole': 'Frontal pole',
'Fusiform gyrus': 'Fusiform gyr.',
'Temporal pole': 'Temporal pole',
'TrIFG': 'Triangular part of IFG',
'TTG': 'Trans. temporal gyr.',
'Entorh. cortex': 'Entorhinal area',
'Parietal operculum': 'Parietal operculum',
'SPL': 'Sup. parietal lobule',
'CSF': 'CSF',
'3rd Ventricle': '3rd Ventricle',
'4th Ventricle': '4th Ventricle',
'Lateral Ventricles': 'Inf. Lat. Ventricles',
'Vessels': 'Vessels',
'Optic Chiasm': 'Optic Chiasm',
'Vermal Lobules': 'Cereb. Verm. Lob.',
'Basal Forebrain': 'Basal Forebrain',
'Calc': 'Calcarine cortex',
'GRe': 'Gyrus rectus',
'IOG': 'Inf. occipital gyr.',
'ITG': 'Inf. temporal gyr.',
'LiG': 'Lingual gyr.',
'LOrG': 'Lat. orbital gyr.',
'MCgG': 'Mid. cingulate gyr.',
'MFC': 'Med. frontal cortex',
'MFG': 'Mid. frontal gyr.',
'MOG': 'Mid. occipital gyr.',
'MOrG': 'Med. orbital gyr.',
'MPoG': 'Post. gyr. med. seg.',
'MPrG': 'Pre. gyr. med. seg.',
'MSFG': 'Sup. frontal gyr. med. seg.',
'MTG': 'Mid. temporal gyr.',
'OCP': 'Occipital pole',
'OFuG': 'Occipital fusiform gyr.',
'OpIFG': 'Opercular part of IFG',
'OrIFG': 'Orbital part of IFG',
'PCgG': 'Post. cingulate gyr.',
'PCu': 'Precuneus',
'PoG': 'Postcentral gyr.',
'POrG': 'Post. orbital gyr.',
'PP': 'Planum polare',
'PrG': 'Precentral gyr.',
'PT': 'Planum temporale',
'SCA': 'Subcallosal area',
'SFG': 'Sup. frontal gyr.',
'SMC': 'Supp. motor cortex',
'SMG': 'Supramarginal gyr.',
'SOG': 'Sup. occipital gyr.',
'STG': 'Sup. temporal gyr.'
}