From 46e9b80bc4bd33c97adb244aa8a441b5f443a002 Mon Sep 17 00:00:00 2001 From: "Mark A. Miller" Date: Fri, 9 Jun 2023 18:54:57 -0400 Subject: [PATCH] regen for 7.6.2 --- .../Database-functional-annotations.ttl | 28 +- examples/output/Database-mags-activities.ttl | 40 +- examples/output/Study-exhaustive.ttl | 12 +- nmdc_schema/nmdc.py | 2509 ++++---- nmdc_schema/nmdc.schema.json | 4 +- .../nmdc_materialized_patterns.schema.json | 4 +- nmdc_schema/nmdc_materialized_patterns.yaml | 5673 ++++++++--------- nmdc_schema/nmdc_schema_merged.yaml | 4509 +++++++------ project/jsonschema/nmdc.schema.json | 4 +- .../nmdc_materialized_patterns.schema.json | 4 +- project/nmdc_materialized_patterns.yaml | 5673 ++++++++--------- project/nmdc_schema_generated.yaml | 5673 ++++++++--------- project/nmdc_schema_merged.yaml | 4509 +++++++------ project/owl/nmdc.owl.ttl | 3279 +++++----- src/schema/mixs.yaml | 1832 +++--- 15 files changed, 16868 insertions(+), 16885 deletions(-) diff --git a/examples/output/Database-functional-annotations.ttl b/examples/output/Database-functional-annotations.ttl index 808a5daeae..7ec1358238 100644 --- a/examples/output/Database-functional-annotations.ttl +++ b/examples/output/Database-functional-annotations.ttl @@ -2,33 +2,33 @@ [] a nmdc:Database ; nmdc:functional_annotation_set [ a nmdc:FunctionalAnnotation ; - nmdc:has_function "KEGG.REACTION:R00100" ], - [ a nmdc:FunctionalAnnotation ; - nmdc:has_function "TIGRFAM:TIGR00010" ], + nmdc:has_function "EC:1.1.1.1" ], [ a nmdc:FunctionalAnnotation ; - nmdc:has_function "MetaCyc:RXN-14904" ], + nmdc:has_function "GO:0032571" ], [ a nmdc:FunctionalAnnotation ; - nmdc:has_function "RHEA:12345" ], + nmdc:has_function "CATH:1.10.10.200" ], [ a nmdc:FunctionalAnnotation ; nmdc:has_function "KEGG.ORTHOLOGY:K00001" ], [ a nmdc:FunctionalAnnotation ; - nmdc:has_function "MetaNetX:MNXR101574" ], + nmdc:has_function "MetaCyc:RXN-14904" ], [ a nmdc:FunctionalAnnotation ; - nmdc:has_function "EC:1.1.1.1" ], + nmdc:has_function "KEGG_PATHWAY:rsk00410" ], [ a nmdc:FunctionalAnnotation ; - nmdc:has_function "GO:0032571" ], + nmdc:has_function "KEGG.REACTION:R00100" ], [ a nmdc:FunctionalAnnotation ; - nmdc:has_function "CATH:1.10.10.200" ], + nmdc:has_function "RHEA:12345" ], + [ a nmdc:FunctionalAnnotation ; + nmdc:has_function "TIGRFAM:TIGR00010" ], [ a nmdc:FunctionalAnnotation ; nmdc:has_function "EGGNOG:veNOG12876" ], [ a nmdc:FunctionalAnnotation ; - nmdc:has_function "PFAM:PF11779" ], + nmdc:has_function "SUPFAM:SSF57615" ], [ a nmdc:FunctionalAnnotation ; - nmdc:has_function "PANTHER.FAMILY:PTHR12345" ], + nmdc:has_function "SEED:Biotin_biosynthesis" ], [ a nmdc:FunctionalAnnotation ; - nmdc:has_function "SUPFAM:SSF57615" ], + nmdc:has_function "PFAM:PF11779" ], [ a nmdc:FunctionalAnnotation ; - nmdc:has_function "KEGG_PATHWAY:rsk00410" ], + nmdc:has_function "PANTHER.FAMILY:PTHR12345" ], [ a nmdc:FunctionalAnnotation ; - nmdc:has_function "SEED:Biotin_biosynthesis" ] . + nmdc:has_function "MetaNetX:MNXR101574" ] . diff --git a/examples/output/Database-mags-activities.ttl b/examples/output/Database-mags-activities.ttl index beebd7aeec..6e2ab51672 100644 --- a/examples/output/Database-mags-activities.ttl +++ b/examples/output/Database-mags-activities.ttl @@ -17,17 +17,6 @@ nmdc:wfmag-99-5MiDJM a nmdc:MagsAnalysisActivity ; nmdc:input_contig_num 169782 ; nmdc:low_depth_contig_num 0 ; nmdc:mags_list [ a nmdc:MagBin ; - nmdc:bin_name "bins.1" ; - nmdc:bin_quality "LQ" ; - nmdc:completeness "11.42"^^xsd:float ; - nmdc:contamination "0.21"^^xsd:float ; - nmdc:gene_count 250 ; - nmdc:num_16s 0 ; - nmdc:num_23s 0 ; - nmdc:num_5s 1 ; - nmdc:num_t_rna 1 ; - nmdc:number_of_contig 52 ], - [ a nmdc:MagBin ; nmdc:bin_name "bins.2" ; nmdc:bin_quality "LQ" ; nmdc:completeness "51.25"^^xsd:float ; @@ -48,7 +37,18 @@ nmdc:wfmag-99-5MiDJM a nmdc:MagsAnalysisActivity ; nmdc:num_23s 0 ; nmdc:num_5s 0 ; nmdc:num_t_rna 1 ; - nmdc:number_of_contig 11 ] ; + nmdc:number_of_contig 11 ], + [ a nmdc:MagBin ; + nmdc:bin_name "bins.1" ; + nmdc:bin_quality "LQ" ; + nmdc:completeness "11.42"^^xsd:float ; + nmdc:contamination "0.21"^^xsd:float ; + nmdc:gene_count 250 ; + nmdc:num_16s 0 ; + nmdc:num_23s 0 ; + nmdc:num_5s 1 ; + nmdc:num_t_rna 1 ; + nmdc:number_of_contig 52 ] ; nmdc:name "MAGs activiity 1781_86101" ; nmdc:started_at_time "2021-01-10T00:00:00+00:00"^^xsd:dateTime ; nmdc:too_short_contig_num 159810 ; @@ -71,26 +71,26 @@ nmdc:wfmag-99-VOgM5i a nmdc:MagsAnalysisActivity ; nmdc:input_contig_num 78376 ; nmdc:low_depth_contig_num 0 ; nmdc:mags_list [ a nmdc:MagBin ; - nmdc:bin_name "bins.2" ; + nmdc:bin_name "bins.1" ; nmdc:bin_quality "LQ" ; - nmdc:completeness "0.0"^^xsd:float ; + nmdc:completeness "25.86"^^xsd:float ; nmdc:contamination "0.0"^^xsd:float ; - nmdc:gene_count 383 ; + nmdc:gene_count 401 ; nmdc:num_16s 0 ; nmdc:num_23s 0 ; nmdc:num_5s 0 ; - nmdc:num_t_rna 5 ; + nmdc:num_t_rna 4 ; nmdc:number_of_contig 74 ], [ a nmdc:MagBin ; - nmdc:bin_name "bins.1" ; + nmdc:bin_name "bins.2" ; nmdc:bin_quality "LQ" ; - nmdc:completeness "25.86"^^xsd:float ; + nmdc:completeness "0.0"^^xsd:float ; nmdc:contamination "0.0"^^xsd:float ; - nmdc:gene_count 401 ; + nmdc:gene_count 383 ; nmdc:num_16s 0 ; nmdc:num_23s 0 ; nmdc:num_5s 0 ; - nmdc:num_t_rna 4 ; + nmdc:num_t_rna 5 ; nmdc:number_of_contig 74 ], [ a nmdc:MagBin ; nmdc:bin_name "bins.3" ; diff --git a/examples/output/Study-exhaustive.ttl b/examples/output/Study-exhaustive.ttl index 1e94ee70c0..f6ee6b6264 100644 --- a/examples/output/Study-exhaustive.ttl +++ b/examples/output/Study-exhaustive.ttl @@ -64,16 +64,16 @@ nmdc:sty-11-ab a nmdc:Study ; "any string 2" ; nmdc:specific_ecosystem "unconstrained text" ; nmdc:study_image [ a nmdc:ImageValue ; - dcterms:description "Photo of Craig Venter Institute, Rockville, Maryland" ; - nmdc:display_order "1" ; - nmdc:has_raw_value "https://upload.wikimedia.org/wikipedia/commons/8/86/J._Craig_Vernter_Institute_Rockville_Maryland.jpg" ; - nmdc:url "https://upload.wikimedia.org/wikipedia/commons/8/86/J._Craig_Vernter_Institute_Rockville_Maryland.jpg" ; - nmdc:was_generated_by nmdc:any_string_1 ], - [ a nmdc:ImageValue ; dcterms:description "Photo of Craig Venter Institute, La Jolla, California" ; nmdc:display_order "2" ; nmdc:has_raw_value "https://today.ucsd.edu/news_uploads/140213ventor2.jpg" ; nmdc:url "https://today.ucsd.edu/news_uploads/140213ventor2.jpg" ; + nmdc:was_generated_by nmdc:any_string_1 ], + [ a nmdc:ImageValue ; + dcterms:description "Photo of Craig Venter Institute, Rockville, Maryland" ; + nmdc:display_order "1" ; + nmdc:has_raw_value "https://upload.wikimedia.org/wikipedia/commons/8/86/J._Craig_Vernter_Institute_Rockville_Maryland.jpg" ; + nmdc:url "https://upload.wikimedia.org/wikipedia/commons/8/86/J._Craig_Vernter_Institute_Rockville_Maryland.jpg" ; nmdc:was_generated_by nmdc:any_string_1 ] ; nmdc:title "Sample Exhaustive Biosample instance. Although all of these values should pass validation, that does not mean that any Biosample of any type would necessarily have this particular combination of values." ; nmdc:type "any string" ; diff --git a/nmdc_schema/nmdc.py b/nmdc_schema/nmdc.py index 6c86d5d932..83ef94bd93 100644 --- a/nmdc_schema/nmdc.py +++ b/nmdc_schema/nmdc.py @@ -1,8 +1,8 @@ # Auto generated from nmdc.yaml by pythongen.py version: 0.9.0 -# Generation date: 2023-06-09T16:33:20 +# Generation date: 2023-06-09T18:48:35 # Schema: NMDC # -# id: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc +# id: https://w3id.org/nmdc/nmdc # description: Schema for National Microbiome Data Collaborative (NMDC). # This schema is organized into multiple modules, such as: # @@ -31,7 +31,7 @@ from linkml_runtime.utils.metamodelcore import Bool, URIorCURIE, XSDDateTime metamodel_version = "1.7.0" -version = "v7.6.1" +version = "v7.6.2" # Overwrite dataclasses _init_fn to add **kwargs in __init__ dataclasses._init_fn = dataclasses_init_fn_with_kwargs @@ -42,10 +42,10 @@ CHEBI = CurieNamespace('CHEBI', 'http://purl.obolibrary.org/obo/CHEBI_') CHEMBL_COMPOUND = CurieNamespace('CHEMBL_COMPOUND', 'http://identifiers.org/chembl.compound/') CHMO = CurieNamespace('CHMO', 'http://purl.obolibrary.org/obo/CHMO_') -COG = CurieNamespace('COG', 'https://bioregistry.io/reference/cog:') +COG = CurieNamespace('COG', 'https://bioregistry.io/cog:') DRUGBANK = CurieNamespace('DRUGBANK', 'http://identifiers.org/drugbank/') -EC = CurieNamespace('EC', 'https://bioregistry.io/reference/eccode:') -EFO = CurieNamespace('EFO', 'http://identifiers.org/efo/') +EC = CurieNamespace('EC', 'https://bioregistry.io/eccode:') +EFO = CurieNamespace('EFO', 'http://www.ebi.ac.uk/efo/') EGGNOG = CurieNamespace('EGGNOG', 'http://identifiers.org/eggnog/') FBCV = CurieNamespace('FBcv', 'http://purl.obolibrary.org/obo/FBcv_') GO = CurieNamespace('GO', 'http://purl.obolibrary.org/obo/GO_') @@ -75,19 +75,18 @@ UNIPROTKB = CurieNamespace('UniProtKB', 'https://identifiers.org/uniprot/') BIOLINK = CurieNamespace('biolink', 'https://w3id.org/biolink/vocab/') DCTERMS = CurieNamespace('dcterms', 'http://purl.org/dc/terms/') -EMSL_PROJECT = CurieNamespace('emsl_project', 'https://bioregistry.io/reference/emsl.project:') +EMSL_PROJECT = CurieNamespace('emsl_project', 'https://bioregistry.io/emsl.project:') GENERIC = CurieNamespace('generic', 'https://example.com/generic/') -GNPS_TASK = CurieNamespace('gnps_task', 'https://bioregistry.io/reference/gnps.task:') +GNPS_TASK = CurieNamespace('gnps_task', 'https://bioregistry.io/gnps.task:') GTPO = CurieNamespace('gtpo', 'http://example.com/gtpo/') IGSN = CurieNamespace('igsn', 'https://app.geosamples.org/sample/igsn/') JGI = CurieNamespace('jgi', 'http://example.com/jgi/') -JGI_PROPOSAL = CurieNamespace('jgi_proposal', 'https://bioregistry.io/reference/jgi.proposal:') +JGI_PROPOSAL = CurieNamespace('jgi_proposal', 'https://bioregistry.io/jgi.proposal:') LINKML = CurieNamespace('linkml', 'https://w3id.org/linkml/') MGNIFY_PROJ = CurieNamespace('mgnify_proj', 'https://identifiers.org/mgnify.proj:') NEON_IDENTIFIER = CurieNamespace('neon_identifier', 'http://example.org/neon/identifier/') NEON_SCHEMA = CurieNamespace('neon_schema', 'http://example.org/neon/schema/') NMDC = CurieNamespace('nmdc', 'https://w3id.org/nmdc/') -NMDC_YAML = CurieNamespace('nmdc_yaml', 'https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/') PROV = CurieNamespace('prov', 'http://www.w3.org/ns/prov#') QUD = CurieNamespace('qud', 'http://qudt.org/1.1/schema/qudt#') RDF = CurieNamespace('rdf', 'http://www.w3.org/1999/02/22-rdf-syntax-ns#') @@ -6231,218 +6230,222 @@ class ProcessingInstitutionEnum(EnumDefinitionImpl): name="ProcessingInstitutionEnum", ) -class DoorCompTypeEnum(EnumDefinitionImpl): +class WallLocEnum(EnumDefinitionImpl): - revolving = PermissibleValue(text="revolving") - sliding = PermissibleValue(text="sliding") - telescopic = PermissibleValue(text="telescopic") + north = PermissibleValue(text="north") + south = PermissibleValue(text="south") + east = PermissibleValue(text="east") + west = PermissibleValue(text="west") _defn = EnumDefinition( - name="DoorCompTypeEnum", + name="WallLocEnum", ) - @classmethod - def _addvals(cls): - setattr(cls, "metal covered", - PermissibleValue(text="metal covered")) - -class OrganismCountEnum(EnumDefinitionImpl): +class WallTextureEnum(EnumDefinitionImpl): - ATP = PermissibleValue(text="ATP") - MPN = PermissibleValue(text="MPN") - other = PermissibleValue(text="other") + knockdown = PermissibleValue(text="knockdown") + popcorn = PermissibleValue(text="popcorn") + smooth = PermissibleValue(text="smooth") + swirl = PermissibleValue(text="swirl") _defn = EnumDefinition( - name="OrganismCountEnum", + name="WallTextureEnum", ) -class LightTypeEnum(EnumDefinitionImpl): + @classmethod + def _addvals(cls): + setattr(cls, "crows feet", + PermissibleValue(text="crows feet")) + setattr(cls, "crows-foot stomp", + PermissibleValue(text="crows-foot stomp")) + setattr(cls, "", + PermissibleValue(text="")) + setattr(cls, "double skip", + PermissibleValue(text="double skip")) + setattr(cls, "hawk and trowel", + PermissibleValue(text="hawk and trowel")) + setattr(cls, "orange peel", + PermissibleValue(text="orange peel")) + setattr(cls, "rosebud stomp", + PermissibleValue(text="rosebud stomp")) + setattr(cls, "Santa-Fe texture", + PermissibleValue(text="Santa-Fe texture")) + setattr(cls, "skip trowel", + PermissibleValue(text="skip trowel")) + setattr(cls, "stomp knockdown", + PermissibleValue(text="stomp knockdown")) - none = PermissibleValue(text="none") +class DoorTypeMetalEnum(EnumDefinitionImpl): + + collapsible = PermissibleValue(text="collapsible") + hollow = PermissibleValue(text="hollow") _defn = EnumDefinition( - name="LightTypeEnum", + name="DoorTypeMetalEnum", ) @classmethod def _addvals(cls): - setattr(cls, "natural light", - PermissibleValue(text="natural light")) - setattr(cls, "electric light", - PermissibleValue(text="electric light")) - setattr(cls, "desk lamp", - PermissibleValue(text="desk lamp")) - setattr(cls, "flourescent lights", - PermissibleValue(text="flourescent lights")) + setattr(cls, "corrugated steel", + PermissibleValue(text="corrugated steel")) + setattr(cls, "rolling shutters", + PermissibleValue(text="rolling shutters")) + setattr(cls, "steel plate", + PermissibleValue(text="steel plate")) -class FreqCleanEnum(EnumDefinitionImpl): +class WaterFeatTypeEnum(EnumDefinitionImpl): - Daily = PermissibleValue(text="Daily") - Weekly = PermissibleValue(text="Weekly") - Monthly = PermissibleValue(text="Monthly") - Quarterly = PermissibleValue(text="Quarterly") - Annually = PermissibleValue(text="Annually") - other = PermissibleValue(text="other") + fountain = PermissibleValue(text="fountain") + pool = PermissibleValue(text="pool") + stream = PermissibleValue(text="stream") + waterfall = PermissibleValue(text="waterfall") _defn = EnumDefinition( - name="FreqCleanEnum", + name="WaterFeatTypeEnum", ) -class SubstructureTypeEnum(EnumDefinitionImpl): + @classmethod + def _addvals(cls): + setattr(cls, "standing feature", + PermissibleValue(text="standing feature")) - crawlspace = PermissibleValue(text="crawlspace") - basement = PermissibleValue(text="basement") +class OrganismCountEnum(EnumDefinitionImpl): + + ATP = PermissibleValue(text="ATP") + MPN = PermissibleValue(text="MPN") + other = PermissibleValue(text="other") _defn = EnumDefinition( - name="SubstructureTypeEnum", + name="OrganismCountEnum", ) - @classmethod - def _addvals(cls): - setattr(cls, "slab on grade", - PermissibleValue(text="slab on grade")) - -class DeposEnvEnum(EnumDefinitionImpl): +class GrowthHabitEnum(EnumDefinitionImpl): - other = PermissibleValue(text="other") + erect = PermissibleValue(text="erect") + spreading = PermissibleValue(text="spreading") + prostrate = PermissibleValue(text="prostrate") _defn = EnumDefinition( - name="DeposEnvEnum", + name="GrowthHabitEnum", ) @classmethod def _addvals(cls): - setattr(cls, "Continental - Alluvial", - PermissibleValue(text="Continental - Alluvial")) - setattr(cls, "Continental - Aeolian", - PermissibleValue(text="Continental - Aeolian")) - setattr(cls, "Continental - Fluvial", - PermissibleValue(text="Continental - Fluvial")) - setattr(cls, "Continental - Lacustrine", - PermissibleValue(text="Continental - Lacustrine")) - setattr(cls, "Transitional - Deltaic", - PermissibleValue(text="Transitional - Deltaic")) - setattr(cls, "Transitional - Tidal", - PermissibleValue(text="Transitional - Tidal")) - setattr(cls, "Transitional - Lagoonal", - PermissibleValue(text="Transitional - Lagoonal")) - setattr(cls, "Transitional - Beach", - PermissibleValue(text="Transitional - Beach")) - setattr(cls, "Transitional - Lake", - PermissibleValue(text="Transitional - Lake")) - setattr(cls, "Marine - Shallow", - PermissibleValue(text="Marine - Shallow")) - setattr(cls, "Marine - Deep", - PermissibleValue(text="Marine - Deep")) - setattr(cls, "Marine - Reef", - PermissibleValue(text="Marine - Reef")) - setattr(cls, "Other - Evaporite", - PermissibleValue(text="Other - Evaporite")) - setattr(cls, "Other - Glacial", - PermissibleValue(text="Other - Glacial")) - setattr(cls, "Other - Volcanic", - PermissibleValue(text="Other - Volcanic")) + setattr(cls, "semi-erect", + PermissibleValue(text="semi-erect")) -class ShadingDeviceCondEnum(EnumDefinitionImpl): +class RoomSampPosEnum(EnumDefinitionImpl): - damaged = PermissibleValue(text="damaged") - new = PermissibleValue(text="new") - rupture = PermissibleValue(text="rupture") + center = PermissibleValue(text="center") _defn = EnumDefinition( - name="ShadingDeviceCondEnum", + name="RoomSampPosEnum", ) @classmethod def _addvals(cls): - setattr(cls, "needs repair", - PermissibleValue(text="needs repair")) - setattr(cls, "visible wear", - PermissibleValue(text="visible wear")) + setattr(cls, "north corner", + PermissibleValue(text="north corner")) + setattr(cls, "south corner", + PermissibleValue(text="south corner")) + setattr(cls, "west corner", + PermissibleValue(text="west corner")) + setattr(cls, "east corner", + PermissibleValue(text="east corner")) + setattr(cls, "northeast corner", + PermissibleValue(text="northeast corner")) + setattr(cls, "northwest corner", + PermissibleValue(text="northwest corner")) + setattr(cls, "southeast corner", + PermissibleValue(text="southeast corner")) + setattr(cls, "southwest corner", + PermissibleValue(text="southwest corner")) -class QuadPosEnum(EnumDefinitionImpl): +class RelSampLocEnum(EnumDefinitionImpl): _defn = EnumDefinition( - name="QuadPosEnum", + name="RelSampLocEnum", ) @classmethod def _addvals(cls): - setattr(cls, "North side", - PermissibleValue(text="North side")) - setattr(cls, "West side", - PermissibleValue(text="West side")) - setattr(cls, "South side", - PermissibleValue(text="South side")) - setattr(cls, "East side", - PermissibleValue(text="East side")) + setattr(cls, "edge of car", + PermissibleValue(text="edge of car")) + setattr(cls, "center of car", + PermissibleValue(text="center of car")) + setattr(cls, "under a seat", + PermissibleValue(text="under a seat")) -class SampFloorEnum(EnumDefinitionImpl): +class WallSurfTreatmentEnum(EnumDefinitionImpl): - basement = PermissibleValue(text="basement") - lobby = PermissibleValue(text="lobby") + painted = PermissibleValue(text="painted") + paneling = PermissibleValue(text="paneling") + stucco = PermissibleValue(text="stucco") + fabric = PermissibleValue(text="fabric") _defn = EnumDefinition( - name="SampFloorEnum", + name="WallSurfTreatmentEnum", ) @classmethod def _addvals(cls): - setattr(cls, "1st floor", - PermissibleValue(text="1st floor")) - setattr(cls, "2nd floor", - PermissibleValue(text="2nd floor")) + setattr(cls, "wall paper", + PermissibleValue(text="wall paper")) + setattr(cls, "no treatment", + PermissibleValue(text="no treatment")) -class FloorCondEnum(EnumDefinitionImpl): +class TrainLineEnum(EnumDefinitionImpl): - new = PermissibleValue(text="new") - damaged = PermissibleValue(text="damaged") - rupture = PermissibleValue(text="rupture") + red = PermissibleValue(text="red") + green = PermissibleValue(text="green") + orange = PermissibleValue(text="orange") _defn = EnumDefinition( - name="FloorCondEnum", + name="TrainLineEnum", ) - @classmethod - def _addvals(cls): - setattr(cls, "visible wear", - PermissibleValue(text="visible wear")) - setattr(cls, "needs repair", - PermissibleValue(text="needs repair")) - -class SpecificEnum(EnumDefinitionImpl): +class WindowLocEnum(EnumDefinitionImpl): - operation = PermissibleValue(text="operation") - construction = PermissibleValue(text="construction") - bid = PermissibleValue(text="bid") - design = PermissibleValue(text="design") - photos = PermissibleValue(text="photos") + north = PermissibleValue(text="north") + south = PermissibleValue(text="south") + east = PermissibleValue(text="east") + west = PermissibleValue(text="west") _defn = EnumDefinition( - name="SpecificEnum", + name="WindowLocEnum", ) - @classmethod - def _addvals(cls): - setattr(cls, "as built", - PermissibleValue(text="as built")) - -class CeilCondEnum(EnumDefinitionImpl): +class CeilTextureEnum(EnumDefinitionImpl): - new = PermissibleValue(text="new") - damaged = PermissibleValue(text="damaged") - rupture = PermissibleValue(text="rupture") + knockdown = PermissibleValue(text="knockdown") + popcorn = PermissibleValue(text="popcorn") + smooth = PermissibleValue(text="smooth") + swirl = PermissibleValue(text="swirl") _defn = EnumDefinition( - name="CeilCondEnum", + name="CeilTextureEnum", ) @classmethod def _addvals(cls): - setattr(cls, "visible wear", - PermissibleValue(text="visible wear")) - setattr(cls, "needs repair", - PermissibleValue(text="needs repair")) + setattr(cls, "crows feet", + PermissibleValue(text="crows feet")) + setattr(cls, "crows-foot stomp", + PermissibleValue(text="crows-foot stomp")) + setattr(cls, "double skip", + PermissibleValue(text="double skip")) + setattr(cls, "hawk and trowel", + PermissibleValue(text="hawk and trowel")) + setattr(cls, "orange peel", + PermissibleValue(text="orange peel")) + setattr(cls, "rosebud stomp", + PermissibleValue(text="rosebud stomp")) + setattr(cls, "Santa-Fe texture", + PermissibleValue(text="Santa-Fe texture")) + setattr(cls, "skip trowel", + PermissibleValue(text="skip trowel")) + setattr(cls, "stomp knockdown", + PermissibleValue(text="stomp knockdown")) class OxyStatSampEnum(EnumDefinitionImpl): @@ -6454,106 +6457,79 @@ class OxyStatSampEnum(EnumDefinitionImpl): name="OxyStatSampEnum", ) -class ShadingDeviceTypeEnum(EnumDefinitionImpl): - - tree = PermissibleValue(text="tree") - trellis = PermissibleValue(text="trellis") - - _defn = EnumDefinition( - name="ShadingDeviceTypeEnum", - ) - - @classmethod - def _addvals(cls): - setattr(cls, "bahama shutters", - PermissibleValue(text="bahama shutters")) - setattr(cls, "exterior roll blind", - PermissibleValue(text="exterior roll blind")) - setattr(cls, "gambrel awning", - PermissibleValue(text="gambrel awning")) - setattr(cls, "hood awning", - PermissibleValue(text="hood awning")) - setattr(cls, "porchroller awning", - PermissibleValue(text="porchroller awning")) - setattr(cls, "sarasota shutters", - PermissibleValue(text="sarasota shutters")) - setattr(cls, "slatted aluminum", - PermissibleValue(text="slatted aluminum")) - setattr(cls, "solid aluminum awning", - PermissibleValue(text="solid aluminum awning")) - setattr(cls, "sun screen", - PermissibleValue(text="sun screen")) - setattr(cls, "venetian awning", - PermissibleValue(text="venetian awning")) - -class VisMediaEnum(EnumDefinitionImpl): +class PlantSexEnum(EnumDefinitionImpl): - photos = PermissibleValue(text="photos") - videos = PermissibleValue(text="videos") - interiors = PermissibleValue(text="interiors") - equipment = PermissibleValue(text="equipment") + Androdioecious = PermissibleValue(text="Androdioecious") + Androecious = PermissibleValue(text="Androecious") + Androgynous = PermissibleValue(text="Androgynous") + Androgynomonoecious = PermissibleValue(text="Androgynomonoecious") + Andromonoecious = PermissibleValue(text="Andromonoecious") + Bisexual = PermissibleValue(text="Bisexual") + Dichogamous = PermissibleValue(text="Dichogamous") + Diclinous = PermissibleValue(text="Diclinous") + Dioecious = PermissibleValue(text="Dioecious") + Gynodioecious = PermissibleValue(text="Gynodioecious") + Gynoecious = PermissibleValue(text="Gynoecious") + Gynomonoecious = PermissibleValue(text="Gynomonoecious") + Hermaphroditic = PermissibleValue(text="Hermaphroditic") + Imperfect = PermissibleValue(text="Imperfect") + Monoclinous = PermissibleValue(text="Monoclinous") + Monoecious = PermissibleValue(text="Monoecious") + Perfect = PermissibleValue(text="Perfect") + Polygamodioecious = PermissibleValue(text="Polygamodioecious") + Polygamomonoecious = PermissibleValue(text="Polygamomonoecious") + Polygamous = PermissibleValue(text="Polygamous") + Protandrous = PermissibleValue(text="Protandrous") + Protogynous = PermissibleValue(text="Protogynous") + Subandroecious = PermissibleValue(text="Subandroecious") + Subdioecious = PermissibleValue(text="Subdioecious") + Subgynoecious = PermissibleValue(text="Subgynoecious") + Synoecious = PermissibleValue(text="Synoecious") + Trimonoecious = PermissibleValue(text="Trimonoecious") + Trioecious = PermissibleValue(text="Trioecious") + Unisexual = PermissibleValue(text="Unisexual") _defn = EnumDefinition( - name="VisMediaEnum", + name="PlantSexEnum", ) - @classmethod - def _addvals(cls): - setattr(cls, "commonly of the building", - PermissibleValue(text="commonly of the building")) - setattr(cls, "site context (adjacent buildings, vegetation, terrain, streets)", - PermissibleValue(text="site context (adjacent buildings, vegetation, terrain, streets)")) - setattr(cls, "3D scans", - PermissibleValue(text="3D scans")) - -class DrawingsEnum(EnumDefinitionImpl): +class ExtWallOrientEnum(EnumDefinitionImpl): - operation = PermissibleValue(text="operation") - construction = PermissibleValue(text="construction") - bid = PermissibleValue(text="bid") - design = PermissibleValue(text="design") - diagram = PermissibleValue(text="diagram") - sketch = PermissibleValue(text="sketch") + north = PermissibleValue(text="north") + south = PermissibleValue(text="south") + east = PermissibleValue(text="east") + west = PermissibleValue(text="west") + northeast = PermissibleValue(text="northeast") + southeast = PermissibleValue(text="southeast") + southwest = PermissibleValue(text="southwest") + northwest = PermissibleValue(text="northwest") _defn = EnumDefinition( - name="DrawingsEnum", + name="ExtWallOrientEnum", ) - @classmethod - def _addvals(cls): - setattr(cls, "as built", - PermissibleValue(text="as built")) - setattr(cls, "building navigation map", - PermissibleValue(text="building navigation map")) - -class WindowCoverEnum(EnumDefinitionImpl): +class FurnitureEnum(EnumDefinitionImpl): - blinds = PermissibleValue(text="blinds") - curtains = PermissibleValue(text="curtains") - none = PermissibleValue(text="none") + cabinet = PermissibleValue(text="cabinet") + chair = PermissibleValue(text="chair") + desks = PermissibleValue(text="desks") _defn = EnumDefinition( - name="WindowCoverEnum", + name="FurnitureEnum", ) -class HcProducedEnum(EnumDefinitionImpl): +class SrLithologyEnum(EnumDefinitionImpl): - Oil = PermissibleValue(text="Oil") - Gas = PermissibleValue(text="Gas") - Bitumen = PermissibleValue(text="Bitumen") + Clastic = PermissibleValue(text="Clastic") + Carbonate = PermissibleValue(text="Carbonate") + Coal = PermissibleValue(text="Coal") + Biosilicieous = PermissibleValue(text="Biosilicieous") other = PermissibleValue(text="other") _defn = EnumDefinition( - name="HcProducedEnum", + name="SrLithologyEnum", ) - @classmethod - def _addvals(cls): - setattr(cls, "Gas-Condensate", - PermissibleValue(text="Gas-Condensate")) - setattr(cls, "Coalbed Methane", - PermissibleValue(text="Coalbed Methane")) - class TrainStopLocEnum(EnumDefinitionImpl): end = PermissibleValue(text="end") @@ -6564,138 +6540,283 @@ class TrainStopLocEnum(EnumDefinitionImpl): name="TrainStopLocEnum", ) -class BuildOccupTypeEnum(EnumDefinitionImpl): +class SubstructureTypeEnum(EnumDefinitionImpl): - office = PermissibleValue(text="office") - market = PermissibleValue(text="market") - restaurant = PermissibleValue(text="restaurant") - residence = PermissibleValue(text="residence") - school = PermissibleValue(text="school") - residential = PermissibleValue(text="residential") - commercial = PermissibleValue(text="commercial") - airport = PermissibleValue(text="airport") + crawlspace = PermissibleValue(text="crawlspace") + basement = PermissibleValue(text="basement") _defn = EnumDefinition( - name="BuildOccupTypeEnum", + name="SubstructureTypeEnum", ) @classmethod def _addvals(cls): - setattr(cls, "low rise", - PermissibleValue(text="low rise")) - setattr(cls, "high rise", - PermissibleValue(text="high rise")) - setattr(cls, "wood framed", - PermissibleValue(text="wood framed")) - setattr(cls, "health care", - PermissibleValue(text="health care")) - setattr(cls, "sports complex", - PermissibleValue(text="sports complex")) + setattr(cls, "slab on grade", + PermissibleValue(text="slab on grade")) -class RelSampLocEnum(EnumDefinitionImpl): +class CeilFinishMatEnum(EnumDefinitionImpl): + + drywall = PermissibleValue(text="drywall") + tiles = PermissibleValue(text="tiles") + PVC = PermissibleValue(text="PVC") + plasterboard = PermissibleValue(text="plasterboard") + metal = PermissibleValue(text="metal") + fiberglass = PermissibleValue(text="fiberglass") + stucco = PermissibleValue(text="stucco") + wood = PermissibleValue(text="wood") _defn = EnumDefinition( - name="RelSampLocEnum", + name="CeilFinishMatEnum", ) @classmethod def _addvals(cls): - setattr(cls, "edge of car", - PermissibleValue(text="edge of car")) - setattr(cls, "center of car", - PermissibleValue(text="center of car")) - setattr(cls, "under a seat", - PermissibleValue(text="under a seat")) + setattr(cls, "mineral fibre", + PermissibleValue(text="mineral fibre")) + setattr(cls, "mineral wool/calcium silicate", + PermissibleValue(text="mineral wool/calcium silicate")) -class OccupDocumentEnum(EnumDefinitionImpl): +class DoorTypeEnum(EnumDefinitionImpl): - estimate = PermissibleValue(text="estimate") - videos = PermissibleValue(text="videos") + composite = PermissibleValue(text="composite") + metal = PermissibleValue(text="metal") + wooden = PermissibleValue(text="wooden") _defn = EnumDefinition( - name="OccupDocumentEnum", + name="DoorTypeEnum", + ) + +class BiolStatEnum(EnumDefinitionImpl): + + wild = PermissibleValue(text="wild") + natural = PermissibleValue(text="natural") + hybrid = PermissibleValue(text="hybrid") + mutant = PermissibleValue(text="mutant") + + _defn = EnumDefinition( + name="BiolStatEnum", ) @classmethod def _addvals(cls): - setattr(cls, "automated count", - PermissibleValue(text="automated count")) - setattr(cls, "manual count", - PermissibleValue(text="manual count")) + setattr(cls, "semi-natural", + PermissibleValue(text="semi-natural")) + setattr(cls, "inbred line", + PermissibleValue(text="inbred line")) + setattr(cls, "breeder's line", + PermissibleValue(text="breeder's line")) + setattr(cls, "clonal selection", + PermissibleValue(text="clonal selection")) -class WeekdayEnum(EnumDefinitionImpl): +class WindowVertPosEnum(EnumDefinitionImpl): - Monday = PermissibleValue(text="Monday") - Tuesday = PermissibleValue(text="Tuesday") - Wednesday = PermissibleValue(text="Wednesday") - Thursday = PermissibleValue(text="Thursday") - Friday = PermissibleValue(text="Friday") - Saturday = PermissibleValue(text="Saturday") - Sunday = PermissibleValue(text="Sunday") + bottom = PermissibleValue(text="bottom") + middle = PermissibleValue(text="middle") + top = PermissibleValue(text="top") + low = PermissibleValue(text="low") + high = PermissibleValue(text="high") _defn = EnumDefinition( - name="WeekdayEnum", + name="WindowVertPosEnum", ) -class SoilHorizonEnum(EnumDefinitionImpl): +class TillageEnum(EnumDefinitionImpl): - Permafrost = PermissibleValue(text="Permafrost") + drill = PermissibleValue(text="drill") + chisel = PermissibleValue(text="chisel") + tined = PermissibleValue(text="tined") + mouldboard = PermissibleValue(text="mouldboard") _defn = EnumDefinition( - name="SoilHorizonEnum", + name="TillageEnum", ) @classmethod def _addvals(cls): - setattr(cls, "O horizon", - PermissibleValue(text="O horizon")) - setattr(cls, "A horizon", - PermissibleValue(text="A horizon")) - setattr(cls, "E horizon", - PermissibleValue(text="E horizon")) - setattr(cls, "B horizon", - PermissibleValue(text="B horizon")) - setattr(cls, "C horizon", - PermissibleValue(text="C horizon")) - setattr(cls, "R layer", - PermissibleValue(text="R layer")) - setattr(cls, "M horizon", - PermissibleValue(text="M horizon")) + setattr(cls, "cutting disc", + PermissibleValue(text="cutting disc")) + setattr(cls, "ridge till", + PermissibleValue(text="ridge till")) + setattr(cls, "strip tillage", + PermissibleValue(text="strip tillage")) + setattr(cls, "zonal tillage", + PermissibleValue(text="zonal tillage")) + setattr(cls, "disc plough", + PermissibleValue(text="disc plough")) -class RoomLocEnum(EnumDefinitionImpl): +class BuildDocsEnum(EnumDefinitionImpl): + + schedule = PermissibleValue(text="schedule") + sections = PermissibleValue(text="sections") + submittals = PermissibleValue(text="submittals") + windows = PermissibleValue(text="windows") _defn = EnumDefinition( - name="RoomLocEnum", + name="BuildDocsEnum", ) @classmethod def _addvals(cls): - setattr(cls, "corner room", - PermissibleValue(text="corner room")) - setattr(cls, "interior room", - PermissibleValue(text="interior room")) - setattr(cls, "exterior wall", - PermissibleValue(text="exterior wall")) + setattr(cls, "building information model", + PermissibleValue(text="building information model")) + setattr(cls, "commissioning report", + PermissibleValue(text="commissioning report")) + setattr(cls, "complaint logs", + PermissibleValue(text="complaint logs")) + setattr(cls, "contract administration", + PermissibleValue(text="contract administration")) + setattr(cls, "cost estimate", + PermissibleValue(text="cost estimate")) + setattr(cls, "janitorial schedules or logs", + PermissibleValue(text="janitorial schedules or logs")) + setattr(cls, "maintenance plans", + PermissibleValue(text="maintenance plans")) + setattr(cls, "shop drawings", + PermissibleValue(text="shop drawings")) + setattr(cls, "ventilation system", + PermissibleValue(text="ventilation system")) -class IndoorSurfEnum(EnumDefinitionImpl): +class WindowTypeEnum(EnumDefinitionImpl): - cabinet = PermissibleValue(text="cabinet") - ceiling = PermissibleValue(text="ceiling") - door = PermissibleValue(text="door") - shelving = PermissibleValue(text="shelving") - window = PermissibleValue(text="window") - wall = PermissibleValue(text="wall") + _defn = EnumDefinition( + name="WindowTypeEnum", + ) + + @classmethod + def _addvals(cls): + setattr(cls, "single-hung sash window", + PermissibleValue(text="single-hung sash window")) + setattr(cls, "horizontal sash window", + PermissibleValue(text="horizontal sash window")) + setattr(cls, "fixed window", + PermissibleValue(text="fixed window")) + +class MechStrucEnum(EnumDefinitionImpl): + + subway = PermissibleValue(text="subway") + coach = PermissibleValue(text="coach") + carriage = PermissibleValue(text="carriage") + elevator = PermissibleValue(text="elevator") + escalator = PermissibleValue(text="escalator") + boat = PermissibleValue(text="boat") + train = PermissibleValue(text="train") + car = PermissibleValue(text="car") + bus = PermissibleValue(text="bus") _defn = EnumDefinition( - name="IndoorSurfEnum", + name="MechStrucEnum", + ) + +class DoorLocEnum(EnumDefinitionImpl): + + north = PermissibleValue(text="north") + south = PermissibleValue(text="south") + east = PermissibleValue(text="east") + west = PermissibleValue(text="west") + + _defn = EnumDefinition( + name="DoorLocEnum", + ) + +class ShadingDeviceCondEnum(EnumDefinitionImpl): + + damaged = PermissibleValue(text="damaged") + new = PermissibleValue(text="new") + rupture = PermissibleValue(text="rupture") + + _defn = EnumDefinition( + name="ShadingDeviceCondEnum", ) @classmethod def _addvals(cls): - setattr(cls, "counter top", - PermissibleValue(text="counter top")) - setattr(cls, "vent cover", - PermissibleValue(text="vent cover")) + setattr(cls, "needs repair", + PermissibleValue(text="needs repair")) + setattr(cls, "visible wear", + PermissibleValue(text="visible wear")) + +class SampFloorEnum(EnumDefinitionImpl): + + basement = PermissibleValue(text="basement") + lobby = PermissibleValue(text="lobby") + + _defn = EnumDefinition( + name="SampFloorEnum", + ) + + @classmethod + def _addvals(cls): + setattr(cls, "1st floor", + PermissibleValue(text="1st floor")) + setattr(cls, "2nd floor", + PermissibleValue(text="2nd floor")) + +class SampCollectPointEnum(EnumDefinitionImpl): + + well = PermissibleValue(text="well") + wellhead = PermissibleValue(text="wellhead") + separator = PermissibleValue(text="separator") + other = PermissibleValue(text="other") + + _defn = EnumDefinition( + name="SampCollectPointEnum", + ) + + @classmethod + def _addvals(cls): + setattr(cls, "test well", + PermissibleValue(text="test well")) + setattr(cls, "drilling rig", + PermissibleValue(text="drilling rig")) + setattr(cls, "storage tank", + PermissibleValue(text="storage tank")) + +class SedimentTypeEnum(EnumDefinitionImpl): + + biogenous = PermissibleValue(text="biogenous") + cosmogenous = PermissibleValue(text="cosmogenous") + hydrogenous = PermissibleValue(text="hydrogenous") + lithogenous = PermissibleValue(text="lithogenous") + + _defn = EnumDefinition( + name="SedimentTypeEnum", + ) + +class IndoorSpaceEnum(EnumDefinitionImpl): + + bedroom = PermissibleValue(text="bedroom") + office = PermissibleValue(text="office") + bathroom = PermissibleValue(text="bathroom") + foyer = PermissibleValue(text="foyer") + kitchen = PermissibleValue(text="kitchen") + hallway = PermissibleValue(text="hallway") + elevator = PermissibleValue(text="elevator") + + _defn = EnumDefinition( + name="IndoorSpaceEnum", + ) + + @classmethod + def _addvals(cls): + setattr(cls, "locker room", + PermissibleValue(text="locker room")) + +class HandidnessEnum(EnumDefinitionImpl): + + ambidexterity = PermissibleValue(text="ambidexterity") + + _defn = EnumDefinition( + name="HandidnessEnum", + ) + + @classmethod + def _addvals(cls): + setattr(cls, "left handedness", + PermissibleValue(text="left handedness")) + setattr(cls, "mixed-handedness", + PermissibleValue(text="mixed-handedness")) + setattr(cls, "right handedness", + PermissibleValue(text="right handedness")) class DoorTypeWoodEnum(EnumDefinitionImpl): @@ -6746,71 +6867,44 @@ def _addvals(cls): setattr(cls, "wood-framed", PermissibleValue(text="wood-framed")) -class DoorTypeMetalEnum(EnumDefinitionImpl): +class FloorCondEnum(EnumDefinitionImpl): - collapsible = PermissibleValue(text="collapsible") - hollow = PermissibleValue(text="hollow") + new = PermissibleValue(text="new") + damaged = PermissibleValue(text="damaged") + rupture = PermissibleValue(text="rupture") _defn = EnumDefinition( - name="DoorTypeMetalEnum", + name="FloorCondEnum", ) @classmethod def _addvals(cls): - setattr(cls, "corrugated steel", - PermissibleValue(text="corrugated steel")) - setattr(cls, "rolling shutters", - PermissibleValue(text="rolling shutters")) - setattr(cls, "steel plate", - PermissibleValue(text="steel plate")) + setattr(cls, "visible wear", + PermissibleValue(text="visible wear")) + setattr(cls, "needs repair", + PermissibleValue(text="needs repair")) -class SampWeatherEnum(EnumDefinitionImpl): +class DrawingsEnum(EnumDefinitionImpl): - cloudy = PermissibleValue(text="cloudy") - foggy = PermissibleValue(text="foggy") - hail = PermissibleValue(text="hail") - rain = PermissibleValue(text="rain") - snow = PermissibleValue(text="snow") - sleet = PermissibleValue(text="sleet") - sunny = PermissibleValue(text="sunny") - windy = PermissibleValue(text="windy") + operation = PermissibleValue(text="operation") + construction = PermissibleValue(text="construction") + bid = PermissibleValue(text="bid") + design = PermissibleValue(text="design") + diagram = PermissibleValue(text="diagram") + sketch = PermissibleValue(text="sketch") _defn = EnumDefinition( - name="SampWeatherEnum", + name="DrawingsEnum", ) @classmethod def _addvals(cls): - setattr(cls, "clear sky", - PermissibleValue(text="clear sky")) + setattr(cls, "as built", + PermissibleValue(text="as built")) + setattr(cls, "building navigation map", + PermissibleValue(text="building navigation map")) -class ExtWindowOrientEnum(EnumDefinitionImpl): - - north = PermissibleValue(text="north") - south = PermissibleValue(text="south") - east = PermissibleValue(text="east") - west = PermissibleValue(text="west") - northeast = PermissibleValue(text="northeast") - southeast = PermissibleValue(text="southeast") - southwest = PermissibleValue(text="southwest") - northwest = PermissibleValue(text="northwest") - - _defn = EnumDefinition( - name="ExtWindowOrientEnum", - ) - -class SedimentTypeEnum(EnumDefinitionImpl): - - biogenous = PermissibleValue(text="biogenous") - cosmogenous = PermissibleValue(text="cosmogenous") - hydrogenous = PermissibleValue(text="hydrogenous") - lithogenous = PermissibleValue(text="lithogenous") - - _defn = EnumDefinition( - name="SedimentTypeEnum", - ) - -class RoomCondtEnum(EnumDefinitionImpl): +class RoomCondtEnum(EnumDefinitionImpl): new = PermissibleValue(text="new") damaged = PermissibleValue(text="damaged") @@ -6829,72 +6923,99 @@ def _addvals(cls): setattr(cls, "visible signs of mold/mildew", PermissibleValue(text="visible signs of mold/mildew")) -class SrDepEnvEnum(EnumDefinitionImpl): +class HcProducedEnum(EnumDefinitionImpl): - Lacustine = PermissibleValue(text="Lacustine") - Fluvioldeltaic = PermissibleValue(text="Fluvioldeltaic") - Fluviomarine = PermissibleValue(text="Fluviomarine") - Marine = PermissibleValue(text="Marine") + Oil = PermissibleValue(text="Oil") + Gas = PermissibleValue(text="Gas") + Bitumen = PermissibleValue(text="Bitumen") other = PermissibleValue(text="other") _defn = EnumDefinition( - name="SrDepEnvEnum", + name="HcProducedEnum", ) -class WallSurfTreatmentEnum(EnumDefinitionImpl): + @classmethod + def _addvals(cls): + setattr(cls, "Gas-Condensate", + PermissibleValue(text="Gas-Condensate")) + setattr(cls, "Coalbed Methane", + PermissibleValue(text="Coalbed Methane")) - painted = PermissibleValue(text="painted") - paneling = PermissibleValue(text="paneling") +class SurfMaterialEnum(EnumDefinitionImpl): + + adobe = PermissibleValue(text="adobe") + carpet = PermissibleValue(text="carpet") + concrete = PermissibleValue(text="concrete") + glass = PermissibleValue(text="glass") + metal = PermissibleValue(text="metal") + paint = PermissibleValue(text="paint") + plastic = PermissibleValue(text="plastic") + stone = PermissibleValue(text="stone") stucco = PermissibleValue(text="stucco") - fabric = PermissibleValue(text="fabric") + tile = PermissibleValue(text="tile") + vinyl = PermissibleValue(text="vinyl") + wood = PermissibleValue(text="wood") _defn = EnumDefinition( - name="WallSurfTreatmentEnum", + name="SurfMaterialEnum", ) @classmethod def _addvals(cls): - setattr(cls, "wall paper", - PermissibleValue(text="wall paper")) - setattr(cls, "no treatment", - PermissibleValue(text="no treatment")) + setattr(cls, "cinder blocks", + PermissibleValue(text="cinder blocks")) + setattr(cls, "hay bales", + PermissibleValue(text="hay bales")) + setattr(cls, "stainless steel", + PermissibleValue(text="stainless steel")) -class WaterFeatTypeEnum(EnumDefinitionImpl): +class VisMediaEnum(EnumDefinitionImpl): - fountain = PermissibleValue(text="fountain") - pool = PermissibleValue(text="pool") - stream = PermissibleValue(text="stream") - waterfall = PermissibleValue(text="waterfall") + photos = PermissibleValue(text="photos") + videos = PermissibleValue(text="videos") + interiors = PermissibleValue(text="interiors") + equipment = PermissibleValue(text="equipment") _defn = EnumDefinition( - name="WaterFeatTypeEnum", + name="VisMediaEnum", ) @classmethod def _addvals(cls): - setattr(cls, "standing feature", - PermissibleValue(text="standing feature")) + setattr(cls, "commonly of the building", + PermissibleValue(text="commonly of the building")) + setattr(cls, "site context (adjacent buildings, vegetation, terrain, streets)", + PermissibleValue(text="site context (adjacent buildings, vegetation, terrain, streets)")) + setattr(cls, "3D scans", + PermissibleValue(text="3D scans")) -class WindowMatEnum(EnumDefinitionImpl): +class SampDisStageEnum(EnumDefinitionImpl): - clad = PermissibleValue(text="clad") - fiberglass = PermissibleValue(text="fiberglass") - metal = PermissibleValue(text="metal") - vinyl = PermissibleValue(text="vinyl") - wood = PermissibleValue(text="wood") + dissemination = PermissibleValue(text="dissemination") + infection = PermissibleValue(text="infection") + inoculation = PermissibleValue(text="inoculation") + penetration = PermissibleValue(text="penetration") + other = PermissibleValue(text="other") _defn = EnumDefinition( - name="WindowMatEnum", + name="SampDisStageEnum", ) -class FurnitureEnum(EnumDefinitionImpl): + @classmethod + def _addvals(cls): + setattr(cls, "growth and reproduction", + PermissibleValue(text="growth and reproduction")) - cabinet = PermissibleValue(text="cabinet") - chair = PermissibleValue(text="chair") - desks = PermissibleValue(text="desks") +class ProfilePositionEnum(EnumDefinitionImpl): + + summit = PermissibleValue(text="summit") + shoulder = PermissibleValue(text="shoulder") + backslope = PermissibleValue(text="backslope") + footslope = PermissibleValue(text="footslope") + toeslope = PermissibleValue(text="toeslope") _defn = EnumDefinition( - name="FurnitureEnum", + name="ProfilePositionEnum", ) class BuildingSettingEnum(EnumDefinitionImpl): @@ -6908,245 +7029,187 @@ class BuildingSettingEnum(EnumDefinitionImpl): name="BuildingSettingEnum", ) -class DoorDirectEnum(EnumDefinitionImpl): - - inward = PermissibleValue(text="inward") - outward = PermissibleValue(text="outward") - sideways = PermissibleValue(text="sideways") - - _defn = EnumDefinition( - name="DoorDirectEnum", - ) - -class WindowHorizPosEnum(EnumDefinitionImpl): +class SrGeolAgeEnum(EnumDefinitionImpl): - left = PermissibleValue(text="left") - middle = PermissibleValue(text="middle") - right = PermissibleValue(text="right") + Archean = PermissibleValue(text="Archean") + Cambrian = PermissibleValue(text="Cambrian") + Carboniferous = PermissibleValue(text="Carboniferous") + Cenozoic = PermissibleValue(text="Cenozoic") + Cretaceous = PermissibleValue(text="Cretaceous") + Devonian = PermissibleValue(text="Devonian") + Jurassic = PermissibleValue(text="Jurassic") + Mesozoic = PermissibleValue(text="Mesozoic") + Neogene = PermissibleValue(text="Neogene") + Ordovician = PermissibleValue(text="Ordovician") + Paleogene = PermissibleValue(text="Paleogene") + Paleozoic = PermissibleValue(text="Paleozoic") + Permian = PermissibleValue(text="Permian") + Precambrian = PermissibleValue(text="Precambrian") + Proterozoic = PermissibleValue(text="Proterozoic") + Silurian = PermissibleValue(text="Silurian") + Triassic = PermissibleValue(text="Triassic") + other = PermissibleValue(text="other") _defn = EnumDefinition( - name="WindowHorizPosEnum", + name="SrGeolAgeEnum", ) -class SampDisStageEnum(EnumDefinitionImpl): +class SampCaptStatusEnum(EnumDefinitionImpl): - dissemination = PermissibleValue(text="dissemination") - infection = PermissibleValue(text="infection") - inoculation = PermissibleValue(text="inoculation") - penetration = PermissibleValue(text="penetration") other = PermissibleValue(text="other") _defn = EnumDefinition( - name="SampDisStageEnum", + name="SampCaptStatusEnum", ) @classmethod def _addvals(cls): - setattr(cls, "growth and reproduction", - PermissibleValue(text="growth and reproduction")) + setattr(cls, "active surveillance in response to an outbreak", + PermissibleValue(text="active surveillance in response to an outbreak")) + setattr(cls, "active surveillance not initiated by an outbreak", + PermissibleValue(text="active surveillance not initiated by an outbreak")) + setattr(cls, "farm sample", + PermissibleValue(text="farm sample")) + setattr(cls, "market sample", + PermissibleValue(text="market sample")) -class DoorCondEnum(EnumDefinitionImpl): +class SoilHorizonEnum(EnumDefinitionImpl): - damaged = PermissibleValue(text="damaged") - new = PermissibleValue(text="new") - rupture = PermissibleValue(text="rupture") + Permafrost = PermissibleValue(text="Permafrost") _defn = EnumDefinition( - name="DoorCondEnum", + name="SoilHorizonEnum", ) @classmethod def _addvals(cls): - setattr(cls, "needs repair", - PermissibleValue(text="needs repair")) - setattr(cls, "visible wear", - PermissibleValue(text="visible wear")) + setattr(cls, "O horizon", + PermissibleValue(text="O horizon")) + setattr(cls, "A horizon", + PermissibleValue(text="A horizon")) + setattr(cls, "E horizon", + PermissibleValue(text="E horizon")) + setattr(cls, "B horizon", + PermissibleValue(text="B horizon")) + setattr(cls, "C horizon", + PermissibleValue(text="C horizon")) + setattr(cls, "R layer", + PermissibleValue(text="R layer")) + setattr(cls, "M horizon", + PermissibleValue(text="M horizon")) -class FilterTypeEnum(EnumDefinitionImpl): +class ExtWindowOrientEnum(EnumDefinitionImpl): - HEPA = PermissibleValue(text="HEPA") - electrostatic = PermissibleValue(text="electrostatic") + north = PermissibleValue(text="north") + south = PermissibleValue(text="south") + east = PermissibleValue(text="east") + west = PermissibleValue(text="west") + northeast = PermissibleValue(text="northeast") + southeast = PermissibleValue(text="southeast") + southwest = PermissibleValue(text="southwest") + northwest = PermissibleValue(text="northwest") _defn = EnumDefinition( - name="FilterTypeEnum", + name="ExtWindowOrientEnum", ) - @classmethod - def _addvals(cls): - setattr(cls, "particulate air filter", - PermissibleValue(text="particulate air filter")) - setattr(cls, "chemical air filter", - PermissibleValue(text="chemical air filter")) - setattr(cls, "low-MERV pleated media", - PermissibleValue(text="low-MERV pleated media")) - setattr(cls, "gas-phase or ultraviolet air treatments", - PermissibleValue(text="gas-phase or ultraviolet air treatments")) +class HeatDelivLocEnum(EnumDefinitionImpl): -class WindowTypeEnum(EnumDefinitionImpl): + north = PermissibleValue(text="north") + south = PermissibleValue(text="south") + east = PermissibleValue(text="east") + west = PermissibleValue(text="west") _defn = EnumDefinition( - name="WindowTypeEnum", + name="HeatDelivLocEnum", ) - @classmethod - def _addvals(cls): - setattr(cls, "single-hung sash window", - PermissibleValue(text="single-hung sash window")) - setattr(cls, "horizontal sash window", - PermissibleValue(text="horizontal sash window")) - setattr(cls, "fixed window", - PermissibleValue(text="fixed window")) - -class BuildDocsEnum(EnumDefinitionImpl): +class DoorMoveEnum(EnumDefinitionImpl): - schedule = PermissibleValue(text="schedule") - sections = PermissibleValue(text="sections") - submittals = PermissibleValue(text="submittals") - windows = PermissibleValue(text="windows") + collapsible = PermissibleValue(text="collapsible") + folding = PermissibleValue(text="folding") + revolving = PermissibleValue(text="revolving") + sliding = PermissibleValue(text="sliding") + swinging = PermissibleValue(text="swinging") _defn = EnumDefinition( - name="BuildDocsEnum", + name="DoorMoveEnum", ) @classmethod def _addvals(cls): - setattr(cls, "building information model", - PermissibleValue(text="building information model")) - setattr(cls, "commissioning report", - PermissibleValue(text="commissioning report")) - setattr(cls, "complaint logs", - PermissibleValue(text="complaint logs")) - setattr(cls, "contract administration", - PermissibleValue(text="contract administration")) - setattr(cls, "cost estimate", - PermissibleValue(text="cost estimate")) - setattr(cls, "janitorial schedules or logs", - PermissibleValue(text="janitorial schedules or logs")) - setattr(cls, "maintenance plans", - PermissibleValue(text="maintenance plans")) - setattr(cls, "shop drawings", - PermissibleValue(text="shop drawings")) - setattr(cls, "ventilation system", - PermissibleValue(text="ventilation system")) + setattr(cls, "rolling shutter", + PermissibleValue(text="rolling shutter")) -class CurLandUseEnum(EnumDefinitionImpl): +class FloorFinishMatEnum(EnumDefinitionImpl): - badlands = PermissibleValue(text="badlands") - cities = PermissibleValue(text="cities") - conifers = PermissibleValue(text="conifers") - farmstead = PermissibleValue(text="farmstead") - gravel = PermissibleValue(text="gravel") - hardwoods = PermissibleValue(text="hardwoods") - hayland = PermissibleValue(text="hayland") - marshlands = PermissibleValue(text="marshlands") - meadows = PermissibleValue(text="meadows") - mudflats = PermissibleValue(text="mudflats") - pastureland = PermissibleValue(text="pastureland") - rainforest = PermissibleValue(text="rainforest") - rangeland = PermissibleValue(text="rangeland") - rock = PermissibleValue(text="rock") - sand = PermissibleValue(text="sand") - swamp = PermissibleValue(text="swamp") - tropical = PermissibleValue(text="tropical") - tundra = PermissibleValue(text="tundra") + tile = PermissibleValue(text="tile") + carpet = PermissibleValue(text="carpet") + rug = PermissibleValue(text="rug") + lineoleum = PermissibleValue(text="lineoleum") + stone = PermissibleValue(text="stone") + bamboo = PermissibleValue(text="bamboo") + cork = PermissibleValue(text="cork") + terrazo = PermissibleValue(text="terrazo") + concrete = PermissibleValue(text="concrete") + none = PermissibleValue(text="none") + sealed = PermissibleValue(text="sealed") + paint = PermissibleValue(text="paint") _defn = EnumDefinition( - name="CurLandUseEnum", + name="FloorFinishMatEnum", ) @classmethod def _addvals(cls): - setattr(cls, "crop trees", - PermissibleValue(text="crop trees")) - setattr(cls, "horticultural plants", - PermissibleValue(text="horticultural plants")) - setattr(cls, "industrial areas", - PermissibleValue(text="industrial areas")) - setattr(cls, "intermixed hardwood and conifers", - PermissibleValue(text="intermixed hardwood and conifers")) - setattr(cls, "mines/quarries", - PermissibleValue(text="mines/quarries")) - setattr(cls, "oil waste areas", - PermissibleValue(text="oil waste areas")) - setattr(cls, "permanent snow or ice", - PermissibleValue(text="permanent snow or ice")) - setattr(cls, "roads/railroads", - PermissibleValue(text="roads/railroads")) - setattr(cls, "row crops", - PermissibleValue(text="row crops")) - setattr(cls, "saline seeps", - PermissibleValue(text="saline seeps")) - setattr(cls, "salt flats", - PermissibleValue(text="salt flats")) - setattr(cls, "shrub crops", - PermissibleValue(text="shrub crops")) - setattr(cls, "shrub land", - PermissibleValue(text="shrub land")) - setattr(cls, "small grains", - PermissibleValue(text="small grains")) - setattr(cls, "successional shrub land", - PermissibleValue(text="successional shrub land")) - setattr(cls, "vegetable crops", - PermissibleValue(text="vegetable crops")) - setattr(cls, "vine crops", - PermissibleValue(text="vine crops")) - -class HostSexEnum(EnumDefinitionImpl): - - female = PermissibleValue(text="female") - hermaphrodite = PermissibleValue(text="hermaphrodite") - male = PermissibleValue(text="male") - neuter = PermissibleValue(text="neuter") - - _defn = EnumDefinition( - name="HostSexEnum", - ) - -class SampCollectPointEnum(EnumDefinitionImpl): + setattr(cls, "wood strip or parquet", + PermissibleValue(text="wood strip or parquet")) + setattr(cls, "laminate wood", + PermissibleValue(text="laminate wood")) + setattr(cls, "vinyl composition tile", + PermissibleValue(text="vinyl composition tile")) + setattr(cls, "sheet vinyl", + PermissibleValue(text="sheet vinyl")) + setattr(cls, "clear finish", + PermissibleValue(text="clear finish")) + setattr(cls, "none or unfinished", + PermissibleValue(text="none or unfinished")) - well = PermissibleValue(text="well") - wellhead = PermissibleValue(text="wellhead") - separator = PermissibleValue(text="separator") - other = PermissibleValue(text="other") +class TidalStageEnum(EnumDefinitionImpl): _defn = EnumDefinition( - name="SampCollectPointEnum", + name="TidalStageEnum", ) @classmethod def _addvals(cls): - setattr(cls, "test well", - PermissibleValue(text="test well")) - setattr(cls, "drilling rig", - PermissibleValue(text="drilling rig")) - setattr(cls, "storage tank", - PermissibleValue(text="storage tank")) + setattr(cls, "low tide", + PermissibleValue(text="low tide")) + setattr(cls, "ebb tide", + PermissibleValue(text="ebb tide")) + setattr(cls, "flood tide", + PermissibleValue(text="flood tide")) + setattr(cls, "high tide", + PermissibleValue(text="high tide")) -class TrainLineEnum(EnumDefinitionImpl): +class TrainStatLocEnum(EnumDefinitionImpl): - red = PermissibleValue(text="red") - green = PermissibleValue(text="green") - orange = PermissibleValue(text="orange") + riverside = PermissibleValue(text="riverside") _defn = EnumDefinition( - name="TrainLineEnum", + name="TrainStatLocEnum", ) -class MechStrucEnum(EnumDefinitionImpl): - - subway = PermissibleValue(text="subway") - coach = PermissibleValue(text="coach") - carriage = PermissibleValue(text="carriage") - elevator = PermissibleValue(text="elevator") - escalator = PermissibleValue(text="escalator") - boat = PermissibleValue(text="boat") - train = PermissibleValue(text="train") - car = PermissibleValue(text="car") - bus = PermissibleValue(text="bus") - - _defn = EnumDefinition( - name="MechStrucEnum", - ) + @classmethod + def _addvals(cls): + setattr(cls, "south station above ground", + PermissibleValue(text="south station above ground")) + setattr(cls, "south station underground", + PermissibleValue(text="south station underground")) + setattr(cls, "south station amtrak", + PermissibleValue(text="south station amtrak")) + setattr(cls, "forest hills", + PermissibleValue(text="forest hills")) class LithologyEnum(EnumDefinitionImpl): @@ -7168,100 +7231,130 @@ class LithologyEnum(EnumDefinitionImpl): name="LithologyEnum", ) -class DoorMatEnum(EnumDefinitionImpl): +class HcrGeolAgeEnum(EnumDefinitionImpl): - aluminum = PermissibleValue(text="aluminum") - fiberboard = PermissibleValue(text="fiberboard") - fiberglass = PermissibleValue(text="fiberglass") - metal = PermissibleValue(text="metal") - vinyl = PermissibleValue(text="vinyl") - wood = PermissibleValue(text="wood") + Archean = PermissibleValue(text="Archean") + Cambrian = PermissibleValue(text="Cambrian") + Carboniferous = PermissibleValue(text="Carboniferous") + Cenozoic = PermissibleValue(text="Cenozoic") + Cretaceous = PermissibleValue(text="Cretaceous") + Devonian = PermissibleValue(text="Devonian") + Jurassic = PermissibleValue(text="Jurassic") + Mesozoic = PermissibleValue(text="Mesozoic") + Neogene = PermissibleValue(text="Neogene") + Ordovician = PermissibleValue(text="Ordovician") + Paleogene = PermissibleValue(text="Paleogene") + Paleozoic = PermissibleValue(text="Paleozoic") + Permian = PermissibleValue(text="Permian") + Precambrian = PermissibleValue(text="Precambrian") + Proterozoic = PermissibleValue(text="Proterozoic") + Silurian = PermissibleValue(text="Silurian") + Triassic = PermissibleValue(text="Triassic") + other = PermissibleValue(text="other") _defn = EnumDefinition( - name="DoorMatEnum", + name="HcrGeolAgeEnum", ) - @classmethod - def _addvals(cls): - setattr(cls, "cellular PVC", - PermissibleValue(text="cellular PVC")) - setattr(cls, "engineered plastic", - PermissibleValue(text="engineered plastic")) - setattr(cls, "thermoplastic alloy", - PermissibleValue(text="thermoplastic alloy")) - setattr(cls, "wood/plastic composite", - PermissibleValue(text="wood/plastic composite")) - -class FloorWaterMoldEnum(EnumDefinitionImpl): +class HcrEnum(EnumDefinitionImpl): - condensation = PermissibleValue(text="condensation") + Coalbed = PermissibleValue(text="Coalbed") + Shale = PermissibleValue(text="Shale") + other = PermissibleValue(text="other") _defn = EnumDefinition( - name="FloorWaterMoldEnum", + name="HcrEnum", ) @classmethod def _addvals(cls): - setattr(cls, "mold odor", - PermissibleValue(text="mold odor")) - setattr(cls, "wet floor", - PermissibleValue(text="wet floor")) - setattr(cls, "water stains", - PermissibleValue(text="water stains")) - setattr(cls, "wall discoloration", - PermissibleValue(text="wall discoloration")) - setattr(cls, "floor discoloration", - PermissibleValue(text="floor discoloration")) - setattr(cls, "ceiling discoloration", - PermissibleValue(text="ceiling discoloration")) - setattr(cls, "peeling paint or wallpaper", - PermissibleValue(text="peeling paint or wallpaper")) - setattr(cls, "bulging walls", - PermissibleValue(text="bulging walls")) + setattr(cls, "Oil Reservoir", + PermissibleValue(text="Oil Reservoir")) + setattr(cls, "Gas Reservoir", + PermissibleValue(text="Gas Reservoir")) + setattr(cls, "Oil Sand", + PermissibleValue(text="Oil Sand")) + setattr(cls, "Tight Oil Reservoir", + PermissibleValue(text="Tight Oil Reservoir")) + setattr(cls, "Tight Gas Reservoir", + PermissibleValue(text="Tight Gas Reservoir")) -class SurfAirContEnum(EnumDefinitionImpl): +class BuildOccupTypeEnum(EnumDefinitionImpl): - dust = PermissibleValue(text="dust") - radon = PermissibleValue(text="radon") - nutrients = PermissibleValue(text="nutrients") - biocides = PermissibleValue(text="biocides") + office = PermissibleValue(text="office") + market = PermissibleValue(text="market") + restaurant = PermissibleValue(text="restaurant") + residence = PermissibleValue(text="residence") + school = PermissibleValue(text="school") + residential = PermissibleValue(text="residential") + commercial = PermissibleValue(text="commercial") + airport = PermissibleValue(text="airport") _defn = EnumDefinition( - name="SurfAirContEnum", + name="BuildOccupTypeEnum", ) @classmethod def _addvals(cls): - setattr(cls, "organic matter", - PermissibleValue(text="organic matter")) - setattr(cls, "particulate matter", - PermissibleValue(text="particulate matter")) - setattr(cls, "volatile organic compounds", - PermissibleValue(text="volatile organic compounds")) - setattr(cls, "biological contaminants", - PermissibleValue(text="biological contaminants")) + setattr(cls, "low rise", + PermissibleValue(text="low rise")) + setattr(cls, "high rise", + PermissibleValue(text="high rise")) + setattr(cls, "wood framed", + PermissibleValue(text="wood framed")) + setattr(cls, "health care", + PermissibleValue(text="health care")) + setattr(cls, "sports complex", + PermissibleValue(text="sports complex")) -class CeilFinishMatEnum(EnumDefinitionImpl): +class WindowCoverEnum(EnumDefinitionImpl): - drywall = PermissibleValue(text="drywall") - tiles = PermissibleValue(text="tiles") - PVC = PermissibleValue(text="PVC") - plasterboard = PermissibleValue(text="plasterboard") - metal = PermissibleValue(text="metal") - fiberglass = PermissibleValue(text="fiberglass") - stucco = PermissibleValue(text="stucco") - wood = PermissibleValue(text="wood") + blinds = PermissibleValue(text="blinds") + curtains = PermissibleValue(text="curtains") + none = PermissibleValue(text="none") _defn = EnumDefinition( - name="CeilFinishMatEnum", + name="WindowCoverEnum", + ) + +class CeilCondEnum(EnumDefinitionImpl): + + new = PermissibleValue(text="new") + damaged = PermissibleValue(text="damaged") + rupture = PermissibleValue(text="rupture") + + _defn = EnumDefinition( + name="CeilCondEnum", ) @classmethod def _addvals(cls): - setattr(cls, "mineral fibre", - PermissibleValue(text="mineral fibre")) - setattr(cls, "mineral wool/calcium silicate", - PermissibleValue(text="mineral wool/calcium silicate")) + setattr(cls, "visible wear", + PermissibleValue(text="visible wear")) + setattr(cls, "needs repair", + PermissibleValue(text="needs repair")) + +class PlantGrowthMedEnum(EnumDefinitionImpl): + + perlite = PermissibleValue(text="perlite") + pumice = PermissibleValue(text="pumice") + sand = PermissibleValue(text="sand") + soil = PermissibleValue(text="soil") + vermiculite = PermissibleValue(text="vermiculite") + water = PermissibleValue(text="water") + + _defn = EnumDefinition( + name="PlantGrowthMedEnum", + ) + + @classmethod + def _addvals(cls): + setattr(cls, "other artificial liquid medium", + PermissibleValue(text="other artificial liquid medium")) + setattr(cls, "other artificial solid medium", + PermissibleValue(text="other artificial solid medium")) + setattr(cls, "peat moss", + PermissibleValue(text="peat moss")) class SampMdEnum(EnumDefinitionImpl): @@ -7275,65 +7368,39 @@ class SampMdEnum(EnumDefinitionImpl): name="SampMdEnum", ) -class WallFinishMatEnum(EnumDefinitionImpl): +class DoorDirectEnum(EnumDefinitionImpl): - plaster = PermissibleValue(text="plaster") - tile = PermissibleValue(text="tile") - terrazzo = PermissibleValue(text="terrazzo") - wood = PermissibleValue(text="wood") - metal = PermissibleValue(text="metal") - masonry = PermissibleValue(text="masonry") + inward = PermissibleValue(text="inward") + outward = PermissibleValue(text="outward") + sideways = PermissibleValue(text="sideways") _defn = EnumDefinition( - name="WallFinishMatEnum", + name="DoorDirectEnum", ) - @classmethod - def _addvals(cls): - setattr(cls, "gypsum plaster", - PermissibleValue(text="gypsum plaster")) - setattr(cls, "veneer plaster", - PermissibleValue(text="veneer plaster")) - setattr(cls, "gypsum board", - PermissibleValue(text="gypsum board")) - setattr(cls, "stone facing", - PermissibleValue(text="stone facing")) - setattr(cls, "acoustical treatment", - PermissibleValue(text="acoustical treatment")) - -class FloorFinishMatEnum(EnumDefinitionImpl): +class SrDepEnvEnum(EnumDefinitionImpl): - tile = PermissibleValue(text="tile") - carpet = PermissibleValue(text="carpet") - rug = PermissibleValue(text="rug") - lineoleum = PermissibleValue(text="lineoleum") - stone = PermissibleValue(text="stone") - bamboo = PermissibleValue(text="bamboo") - cork = PermissibleValue(text="cork") - terrazo = PermissibleValue(text="terrazo") - concrete = PermissibleValue(text="concrete") - none = PermissibleValue(text="none") - sealed = PermissibleValue(text="sealed") - paint = PermissibleValue(text="paint") + Lacustine = PermissibleValue(text="Lacustine") + Fluvioldeltaic = PermissibleValue(text="Fluvioldeltaic") + Fluviomarine = PermissibleValue(text="Fluviomarine") + Marine = PermissibleValue(text="Marine") + other = PermissibleValue(text="other") _defn = EnumDefinition( - name="FloorFinishMatEnum", + name="SrDepEnvEnum", ) - @classmethod - def _addvals(cls): - setattr(cls, "wood strip or parquet", - PermissibleValue(text="wood strip or parquet")) - setattr(cls, "laminate wood", - PermissibleValue(text="laminate wood")) - setattr(cls, "vinyl composition tile", - PermissibleValue(text="vinyl composition tile")) - setattr(cls, "sheet vinyl", - PermissibleValue(text="sheet vinyl")) - setattr(cls, "clear finish", - PermissibleValue(text="clear finish")) - setattr(cls, "none or unfinished", - PermissibleValue(text="none or unfinished")) +class WindowMatEnum(EnumDefinitionImpl): + + clad = PermissibleValue(text="clad") + fiberglass = PermissibleValue(text="fiberglass") + metal = PermissibleValue(text="metal") + vinyl = PermissibleValue(text="vinyl") + wood = PermissibleValue(text="wood") + + _defn = EnumDefinition( + name="WindowMatEnum", + ) class SrKerogTypeEnum(EnumDefinitionImpl): @@ -7354,150 +7421,143 @@ def _addvals(cls): setattr(cls, "Type IV", PermissibleValue(text="Type IV")) -class BioticRelationshipEnum(EnumDefinitionImpl): +class WindowHorizPosEnum(EnumDefinitionImpl): - parasite = PermissibleValue(text="parasite") - commensal = PermissibleValue(text="commensal") - symbiont = PermissibleValue(text="symbiont") + left = PermissibleValue(text="left") + middle = PermissibleValue(text="middle") + right = PermissibleValue(text="right") _defn = EnumDefinition( - name="BioticRelationshipEnum", + name="WindowHorizPosEnum", + ) + +class WallFinishMatEnum(EnumDefinitionImpl): + + plaster = PermissibleValue(text="plaster") + tile = PermissibleValue(text="tile") + terrazzo = PermissibleValue(text="terrazzo") + wood = PermissibleValue(text="wood") + metal = PermissibleValue(text="metal") + masonry = PermissibleValue(text="masonry") + + _defn = EnumDefinition( + name="WallFinishMatEnum", ) @classmethod def _addvals(cls): - setattr(cls, "free living", - PermissibleValue(text="free living")) + setattr(cls, "gypsum plaster", + PermissibleValue(text="gypsum plaster")) + setattr(cls, "veneer plaster", + PermissibleValue(text="veneer plaster")) + setattr(cls, "gypsum board", + PermissibleValue(text="gypsum board")) + setattr(cls, "stone facing", + PermissibleValue(text="stone facing")) + setattr(cls, "acoustical treatment", + PermissibleValue(text="acoustical treatment")) -class RoomConnectedEnum(EnumDefinitionImpl): +class DeposEnvEnum(EnumDefinitionImpl): - attic = PermissibleValue(text="attic") - bathroom = PermissibleValue(text="bathroom") - closet = PermissibleValue(text="closet") - elevator = PermissibleValue(text="elevator") - hallway = PermissibleValue(text="hallway") - kitchen = PermissibleValue(text="kitchen") - office = PermissibleValue(text="office") - stairwell = PermissibleValue(text="stairwell") + other = PermissibleValue(text="other") _defn = EnumDefinition( - name="RoomConnectedEnum", + name="DeposEnvEnum", ) @classmethod def _addvals(cls): - setattr(cls, "conference room", - PermissibleValue(text="conference room")) - setattr(cls, "examining room", - PermissibleValue(text="examining room")) - setattr(cls, "mail room", - PermissibleValue(text="mail room")) + setattr(cls, "Continental - Alluvial", + PermissibleValue(text="Continental - Alluvial")) + setattr(cls, "Continental - Aeolian", + PermissibleValue(text="Continental - Aeolian")) + setattr(cls, "Continental - Fluvial", + PermissibleValue(text="Continental - Fluvial")) + setattr(cls, "Continental - Lacustrine", + PermissibleValue(text="Continental - Lacustrine")) + setattr(cls, "Transitional - Deltaic", + PermissibleValue(text="Transitional - Deltaic")) + setattr(cls, "Transitional - Tidal", + PermissibleValue(text="Transitional - Tidal")) + setattr(cls, "Transitional - Lagoonal", + PermissibleValue(text="Transitional - Lagoonal")) + setattr(cls, "Transitional - Beach", + PermissibleValue(text="Transitional - Beach")) + setattr(cls, "Transitional - Lake", + PermissibleValue(text="Transitional - Lake")) + setattr(cls, "Marine - Shallow", + PermissibleValue(text="Marine - Shallow")) + setattr(cls, "Marine - Deep", + PermissibleValue(text="Marine - Deep")) + setattr(cls, "Marine - Reef", + PermissibleValue(text="Marine - Reef")) + setattr(cls, "Other - Evaporite", + PermissibleValue(text="Other - Evaporite")) + setattr(cls, "Other - Glacial", + PermissibleValue(text="Other - Glacial")) + setattr(cls, "Other - Volcanic", + PermissibleValue(text="Other - Volcanic")) -class GrowthHabitEnum(EnumDefinitionImpl): +class IndoorSurfEnum(EnumDefinitionImpl): - erect = PermissibleValue(text="erect") - spreading = PermissibleValue(text="spreading") - prostrate = PermissibleValue(text="prostrate") + cabinet = PermissibleValue(text="cabinet") + ceiling = PermissibleValue(text="ceiling") + door = PermissibleValue(text="door") + shelving = PermissibleValue(text="shelving") + window = PermissibleValue(text="window") + wall = PermissibleValue(text="wall") _defn = EnumDefinition( - name="GrowthHabitEnum", + name="IndoorSurfEnum", ) @classmethod def _addvals(cls): - setattr(cls, "semi-erect", - PermissibleValue(text="semi-erect")) + setattr(cls, "counter top", + PermissibleValue(text="counter top")) + setattr(cls, "vent cover", + PermissibleValue(text="vent cover")) -class SampSubtypeEnum(EnumDefinitionImpl): +class FloorWaterMoldEnum(EnumDefinitionImpl): - biofilm = PermissibleValue(text="biofilm") - other = PermissibleValue(text="other") + condensation = PermissibleValue(text="condensation") _defn = EnumDefinition( - name="SampSubtypeEnum", + name="FloorWaterMoldEnum", ) @classmethod def _addvals(cls): - setattr(cls, "oil phase", - PermissibleValue(text="oil phase")) - setattr(cls, "water phase", - PermissibleValue(text="water phase")) - setattr(cls, "not applicable", - PermissibleValue(text="not applicable")) - -class PlantGrowthMedEnum(EnumDefinitionImpl): - - perlite = PermissibleValue(text="perlite") - pumice = PermissibleValue(text="pumice") - sand = PermissibleValue(text="sand") - soil = PermissibleValue(text="soil") - vermiculite = PermissibleValue(text="vermiculite") - water = PermissibleValue(text="water") - - _defn = EnumDefinition( - name="PlantGrowthMedEnum", - ) - - @classmethod - def _addvals(cls): - setattr(cls, "other artificial liquid medium", - PermissibleValue(text="other artificial liquid medium")) - setattr(cls, "other artificial solid medium", - PermissibleValue(text="other artificial solid medium")) - setattr(cls, "peat moss", - PermissibleValue(text="peat moss")) - -class ExtWallOrientEnum(EnumDefinitionImpl): - - north = PermissibleValue(text="north") - south = PermissibleValue(text="south") - east = PermissibleValue(text="east") - west = PermissibleValue(text="west") - northeast = PermissibleValue(text="northeast") - southeast = PermissibleValue(text="southeast") - southwest = PermissibleValue(text="southwest") - northwest = PermissibleValue(text="northwest") - - _defn = EnumDefinition( - name="ExtWallOrientEnum", - ) - -class DoorMoveEnum(EnumDefinitionImpl): - - collapsible = PermissibleValue(text="collapsible") - folding = PermissibleValue(text="folding") - revolving = PermissibleValue(text="revolving") - sliding = PermissibleValue(text="sliding") - swinging = PermissibleValue(text="swinging") - - _defn = EnumDefinition( - name="DoorMoveEnum", - ) - - @classmethod - def _addvals(cls): - setattr(cls, "rolling shutter", - PermissibleValue(text="rolling shutter")) + setattr(cls, "mold odor", + PermissibleValue(text="mold odor")) + setattr(cls, "wet floor", + PermissibleValue(text="wet floor")) + setattr(cls, "water stains", + PermissibleValue(text="water stains")) + setattr(cls, "wall discoloration", + PermissibleValue(text="wall discoloration")) + setattr(cls, "floor discoloration", + PermissibleValue(text="floor discoloration")) + setattr(cls, "ceiling discoloration", + PermissibleValue(text="ceiling discoloration")) + setattr(cls, "peeling paint or wallpaper", + PermissibleValue(text="peeling paint or wallpaper")) + setattr(cls, "bulging walls", + PermissibleValue(text="bulging walls")) -class CeilTypeEnum(EnumDefinitionImpl): +class FreqCleanEnum(EnumDefinitionImpl): - cathedral = PermissibleValue(text="cathedral") - dropped = PermissibleValue(text="dropped") - concave = PermissibleValue(text="concave") - coffered = PermissibleValue(text="coffered") - cove = PermissibleValue(text="cove") - stretched = PermissibleValue(text="stretched") + Daily = PermissibleValue(text="Daily") + Weekly = PermissibleValue(text="Weekly") + Monthly = PermissibleValue(text="Monthly") + Quarterly = PermissibleValue(text="Quarterly") + Annually = PermissibleValue(text="Annually") + other = PermissibleValue(text="other") _defn = EnumDefinition( - name="CeilTypeEnum", + name="FreqCleanEnum", ) - @classmethod - def _addvals(cls): - setattr(cls, "barrel-shaped", - PermissibleValue(text="barrel-shaped")) - class HeatCoolTypeEnum(EnumDefinitionImpl): _defn = EnumDefinition( @@ -7517,355 +7577,157 @@ def _addvals(cls): setattr(cls, "wood stove", PermissibleValue(text="wood stove")) -class WindowVertPosEnum(EnumDefinitionImpl): - - bottom = PermissibleValue(text="bottom") - middle = PermissibleValue(text="middle") - top = PermissibleValue(text="top") - low = PermissibleValue(text="low") - high = PermissibleValue(text="high") - - _defn = EnumDefinition( - name="WindowVertPosEnum", - ) - -class IndoorSpaceEnum(EnumDefinitionImpl): - - bedroom = PermissibleValue(text="bedroom") - office = PermissibleValue(text="office") - bathroom = PermissibleValue(text="bathroom") - foyer = PermissibleValue(text="foyer") - kitchen = PermissibleValue(text="kitchen") - hallway = PermissibleValue(text="hallway") - elevator = PermissibleValue(text="elevator") - - _defn = EnumDefinition( - name="IndoorSpaceEnum", - ) - - @classmethod - def _addvals(cls): - setattr(cls, "locker room", - PermissibleValue(text="locker room")) - -class TidalStageEnum(EnumDefinitionImpl): - - _defn = EnumDefinition( - name="TidalStageEnum", - ) - - @classmethod - def _addvals(cls): - setattr(cls, "low tide", - PermissibleValue(text="low tide")) - setattr(cls, "ebb tide", - PermissibleValue(text="ebb tide")) - setattr(cls, "flood tide", - PermissibleValue(text="flood tide")) - setattr(cls, "high tide", - PermissibleValue(text="high tide")) - -class WallTextureEnum(EnumDefinitionImpl): +class DoorCompTypeEnum(EnumDefinitionImpl): - knockdown = PermissibleValue(text="knockdown") - popcorn = PermissibleValue(text="popcorn") - smooth = PermissibleValue(text="smooth") - swirl = PermissibleValue(text="swirl") + revolving = PermissibleValue(text="revolving") + sliding = PermissibleValue(text="sliding") + telescopic = PermissibleValue(text="telescopic") _defn = EnumDefinition( - name="WallTextureEnum", + name="DoorCompTypeEnum", ) @classmethod def _addvals(cls): - setattr(cls, "crows feet", - PermissibleValue(text="crows feet")) - setattr(cls, "crows-foot stomp", - PermissibleValue(text="crows-foot stomp")) - setattr(cls, "", - PermissibleValue(text="")) - setattr(cls, "double skip", - PermissibleValue(text="double skip")) - setattr(cls, "hawk and trowel", - PermissibleValue(text="hawk and trowel")) - setattr(cls, "orange peel", - PermissibleValue(text="orange peel")) - setattr(cls, "rosebud stomp", - PermissibleValue(text="rosebud stomp")) - setattr(cls, "Santa-Fe texture", - PermissibleValue(text="Santa-Fe texture")) - setattr(cls, "skip trowel", - PermissibleValue(text="skip trowel")) - setattr(cls, "stomp knockdown", - PermissibleValue(text="stomp knockdown")) - -class DoorTypeEnum(EnumDefinitionImpl): - - composite = PermissibleValue(text="composite") - metal = PermissibleValue(text="metal") - wooden = PermissibleValue(text="wooden") - - _defn = EnumDefinition( - name="DoorTypeEnum", - ) + setattr(cls, "metal covered", + PermissibleValue(text="metal covered")) -class IntWallCondEnum(EnumDefinitionImpl): +class WindowCondEnum(EnumDefinitionImpl): - new = PermissibleValue(text="new") damaged = PermissibleValue(text="damaged") + new = PermissibleValue(text="new") rupture = PermissibleValue(text="rupture") _defn = EnumDefinition( - name="IntWallCondEnum", + name="WindowCondEnum", ) @classmethod def _addvals(cls): - setattr(cls, "visible wear", - PermissibleValue(text="visible wear")) setattr(cls, "needs repair", PermissibleValue(text="needs repair")) + setattr(cls, "visible wear", + PermissibleValue(text="visible wear")) -class ProfilePositionEnum(EnumDefinitionImpl): - - summit = PermissibleValue(text="summit") - shoulder = PermissibleValue(text="shoulder") - backslope = PermissibleValue(text="backslope") - footslope = PermissibleValue(text="footslope") - toeslope = PermissibleValue(text="toeslope") - - _defn = EnumDefinition( - name="ProfilePositionEnum", - ) - -class ArchStrucEnum(EnumDefinitionImpl): - - building = PermissibleValue(text="building") - shed = PermissibleValue(text="shed") - home = PermissibleValue(text="home") - - _defn = EnumDefinition( - name="ArchStrucEnum", - ) - -class SurfMaterialEnum(EnumDefinitionImpl): +class CeilTypeEnum(EnumDefinitionImpl): - adobe = PermissibleValue(text="adobe") - carpet = PermissibleValue(text="carpet") - concrete = PermissibleValue(text="concrete") - glass = PermissibleValue(text="glass") - metal = PermissibleValue(text="metal") - paint = PermissibleValue(text="paint") - plastic = PermissibleValue(text="plastic") - stone = PermissibleValue(text="stone") - stucco = PermissibleValue(text="stucco") - tile = PermissibleValue(text="tile") - vinyl = PermissibleValue(text="vinyl") - wood = PermissibleValue(text="wood") + cathedral = PermissibleValue(text="cathedral") + dropped = PermissibleValue(text="dropped") + concave = PermissibleValue(text="concave") + coffered = PermissibleValue(text="coffered") + cove = PermissibleValue(text="cove") + stretched = PermissibleValue(text="stretched") _defn = EnumDefinition( - name="SurfMaterialEnum", + name="CeilTypeEnum", ) @classmethod def _addvals(cls): - setattr(cls, "cinder blocks", - PermissibleValue(text="cinder blocks")) - setattr(cls, "hay bales", - PermissibleValue(text="hay bales")) - setattr(cls, "stainless steel", - PermissibleValue(text="stainless steel")) - -class SeasonUseEnum(EnumDefinitionImpl): - - Spring = PermissibleValue(text="Spring") - Summer = PermissibleValue(text="Summer") - Fall = PermissibleValue(text="Fall") - Winter = PermissibleValue(text="Winter") - - _defn = EnumDefinition( - name="SeasonUseEnum", - ) + setattr(cls, "barrel-shaped", + PermissibleValue(text="barrel-shaped")) -class DrainageClassEnum(EnumDefinitionImpl): +class BioticRelationshipEnum(EnumDefinitionImpl): - poorly = PermissibleValue(text="poorly") - well = PermissibleValue(text="well") + parasite = PermissibleValue(text="parasite") + commensal = PermissibleValue(text="commensal") + symbiont = PermissibleValue(text="symbiont") _defn = EnumDefinition( - name="DrainageClassEnum", + name="BioticRelationshipEnum", ) @classmethod def _addvals(cls): - setattr(cls, "very poorly", - PermissibleValue(text="very poorly")) - setattr(cls, "somewhat poorly", - PermissibleValue(text="somewhat poorly")) - setattr(cls, "moderately well", - PermissibleValue(text="moderately well")) - setattr(cls, "excessively drained", - PermissibleValue(text="excessively drained")) - -class WallLocEnum(EnumDefinitionImpl): - - north = PermissibleValue(text="north") - south = PermissibleValue(text="south") - east = PermissibleValue(text="east") - west = PermissibleValue(text="west") - - _defn = EnumDefinition( - name="WallLocEnum", - ) + setattr(cls, "free living", + PermissibleValue(text="free living")) -class BiolStatEnum(EnumDefinitionImpl): +class SampSubtypeEnum(EnumDefinitionImpl): - wild = PermissibleValue(text="wild") - natural = PermissibleValue(text="natural") - hybrid = PermissibleValue(text="hybrid") - mutant = PermissibleValue(text="mutant") + biofilm = PermissibleValue(text="biofilm") + other = PermissibleValue(text="other") _defn = EnumDefinition( - name="BiolStatEnum", + name="SampSubtypeEnum", ) @classmethod def _addvals(cls): - setattr(cls, "semi-natural", - PermissibleValue(text="semi-natural")) - setattr(cls, "inbred line", - PermissibleValue(text="inbred line")) - setattr(cls, "breeder's line", - PermissibleValue(text="breeder's line")) - setattr(cls, "clonal selection", - PermissibleValue(text="clonal selection")) - -class SrLithologyEnum(EnumDefinitionImpl): - - Clastic = PermissibleValue(text="Clastic") - Carbonate = PermissibleValue(text="Carbonate") - Coal = PermissibleValue(text="Coal") - Biosilicieous = PermissibleValue(text="Biosilicieous") - other = PermissibleValue(text="other") - - _defn = EnumDefinition( - name="SrLithologyEnum", - ) - -class HcrGeolAgeEnum(EnumDefinitionImpl): - - Archean = PermissibleValue(text="Archean") - Cambrian = PermissibleValue(text="Cambrian") - Carboniferous = PermissibleValue(text="Carboniferous") - Cenozoic = PermissibleValue(text="Cenozoic") - Cretaceous = PermissibleValue(text="Cretaceous") - Devonian = PermissibleValue(text="Devonian") - Jurassic = PermissibleValue(text="Jurassic") - Mesozoic = PermissibleValue(text="Mesozoic") - Neogene = PermissibleValue(text="Neogene") - Ordovician = PermissibleValue(text="Ordovician") - Paleogene = PermissibleValue(text="Paleogene") - Paleozoic = PermissibleValue(text="Paleozoic") - Permian = PermissibleValue(text="Permian") - Precambrian = PermissibleValue(text="Precambrian") - Proterozoic = PermissibleValue(text="Proterozoic") - Silurian = PermissibleValue(text="Silurian") - Triassic = PermissibleValue(text="Triassic") - other = PermissibleValue(text="other") - - _defn = EnumDefinition( - name="HcrGeolAgeEnum", - ) - -class FaoClassEnum(EnumDefinitionImpl): - - Acrisols = PermissibleValue(text="Acrisols") - Andosols = PermissibleValue(text="Andosols") - Arenosols = PermissibleValue(text="Arenosols") - Cambisols = PermissibleValue(text="Cambisols") - Chernozems = PermissibleValue(text="Chernozems") - Ferralsols = PermissibleValue(text="Ferralsols") - Fluvisols = PermissibleValue(text="Fluvisols") - Gleysols = PermissibleValue(text="Gleysols") - Greyzems = PermissibleValue(text="Greyzems") - Gypsisols = PermissibleValue(text="Gypsisols") - Histosols = PermissibleValue(text="Histosols") - Kastanozems = PermissibleValue(text="Kastanozems") - Lithosols = PermissibleValue(text="Lithosols") - Luvisols = PermissibleValue(text="Luvisols") - Nitosols = PermissibleValue(text="Nitosols") - Phaeozems = PermissibleValue(text="Phaeozems") - Planosols = PermissibleValue(text="Planosols") - Podzols = PermissibleValue(text="Podzols") - Podzoluvisols = PermissibleValue(text="Podzoluvisols") - Rankers = PermissibleValue(text="Rankers") - Regosols = PermissibleValue(text="Regosols") - Rendzinas = PermissibleValue(text="Rendzinas") - Solonchaks = PermissibleValue(text="Solonchaks") - Solonetz = PermissibleValue(text="Solonetz") - Vertisols = PermissibleValue(text="Vertisols") - Yermosols = PermissibleValue(text="Yermosols") + setattr(cls, "oil phase", + PermissibleValue(text="oil phase")) + setattr(cls, "water phase", + PermissibleValue(text="water phase")) + setattr(cls, "not applicable", + PermissibleValue(text="not applicable")) - _defn = EnumDefinition( - name="FaoClassEnum", - ) +class ShadingDeviceTypeEnum(EnumDefinitionImpl): -class WallConstTypeEnum(EnumDefinitionImpl): + tree = PermissibleValue(text="tree") + trellis = PermissibleValue(text="trellis") _defn = EnumDefinition( - name="WallConstTypeEnum", + name="ShadingDeviceTypeEnum", ) @classmethod def _addvals(cls): - setattr(cls, "frame construction", - PermissibleValue(text="frame construction")) - setattr(cls, "joisted masonry", - PermissibleValue(text="joisted masonry")) - setattr(cls, "light noncombustible", - PermissibleValue(text="light noncombustible")) - setattr(cls, "masonry noncombustible", - PermissibleValue(text="masonry noncombustible")) - setattr(cls, "modified fire resistive", - PermissibleValue(text="modified fire resistive")) - setattr(cls, "fire resistive", - PermissibleValue(text="fire resistive")) + setattr(cls, "bahama shutters", + PermissibleValue(text="bahama shutters")) + setattr(cls, "exterior roll blind", + PermissibleValue(text="exterior roll blind")) + setattr(cls, "gambrel awning", + PermissibleValue(text="gambrel awning")) + setattr(cls, "hood awning", + PermissibleValue(text="hood awning")) + setattr(cls, "porchroller awning", + PermissibleValue(text="porchroller awning")) + setattr(cls, "sarasota shutters", + PermissibleValue(text="sarasota shutters")) + setattr(cls, "slatted aluminum", + PermissibleValue(text="slatted aluminum")) + setattr(cls, "solid aluminum awning", + PermissibleValue(text="solid aluminum awning")) + setattr(cls, "sun screen", + PermissibleValue(text="sun screen")) + setattr(cls, "venetian awning", + PermissibleValue(text="venetian awning")) -class RoomSampPosEnum(EnumDefinitionImpl): +class SpecificEnum(EnumDefinitionImpl): - center = PermissibleValue(text="center") + operation = PermissibleValue(text="operation") + construction = PermissibleValue(text="construction") + bid = PermissibleValue(text="bid") + design = PermissibleValue(text="design") + photos = PermissibleValue(text="photos") _defn = EnumDefinition( - name="RoomSampPosEnum", + name="SpecificEnum", ) - @classmethod - def _addvals(cls): - setattr(cls, "north corner", - PermissibleValue(text="north corner")) - setattr(cls, "south corner", - PermissibleValue(text="south corner")) - setattr(cls, "west corner", - PermissibleValue(text="west corner")) - setattr(cls, "east corner", - PermissibleValue(text="east corner")) - setattr(cls, "northeast corner", - PermissibleValue(text="northeast corner")) - setattr(cls, "northwest corner", - PermissibleValue(text="northwest corner")) - setattr(cls, "southeast corner", - PermissibleValue(text="southeast corner")) - setattr(cls, "southwest corner", - PermissibleValue(text="southwest corner")) + @classmethod + def _addvals(cls): + setattr(cls, "as built", + PermissibleValue(text="as built")) -class WindowCondEnum(EnumDefinitionImpl): +class SeasonUseEnum(EnumDefinitionImpl): + + Spring = PermissibleValue(text="Spring") + Summer = PermissibleValue(text="Summer") + Fall = PermissibleValue(text="Fall") + Winter = PermissibleValue(text="Winter") + + _defn = EnumDefinition( + name="SeasonUseEnum", + ) + +class DoorCondEnum(EnumDefinitionImpl): damaged = PermissibleValue(text="damaged") new = PermissibleValue(text="new") rupture = PermissibleValue(text="rupture") _defn = EnumDefinition( - name="WindowCondEnum", + name="DoorCondEnum", ) @classmethod @@ -7875,234 +7737,239 @@ def _addvals(cls): setattr(cls, "visible wear", PermissibleValue(text="visible wear")) -class SrGeolAgeEnum(EnumDefinitionImpl): - - Archean = PermissibleValue(text="Archean") - Cambrian = PermissibleValue(text="Cambrian") - Carboniferous = PermissibleValue(text="Carboniferous") - Cenozoic = PermissibleValue(text="Cenozoic") - Cretaceous = PermissibleValue(text="Cretaceous") - Devonian = PermissibleValue(text="Devonian") - Jurassic = PermissibleValue(text="Jurassic") - Mesozoic = PermissibleValue(text="Mesozoic") - Neogene = PermissibleValue(text="Neogene") - Ordovician = PermissibleValue(text="Ordovician") - Paleogene = PermissibleValue(text="Paleogene") - Paleozoic = PermissibleValue(text="Paleozoic") - Permian = PermissibleValue(text="Permian") - Precambrian = PermissibleValue(text="Precambrian") - Proterozoic = PermissibleValue(text="Proterozoic") - Silurian = PermissibleValue(text="Silurian") - Triassic = PermissibleValue(text="Triassic") - other = PermissibleValue(text="other") +class QuadPosEnum(EnumDefinitionImpl): _defn = EnumDefinition( - name="SrGeolAgeEnum", + name="QuadPosEnum", ) -class TillageEnum(EnumDefinitionImpl): + @classmethod + def _addvals(cls): + setattr(cls, "North side", + PermissibleValue(text="North side")) + setattr(cls, "West side", + PermissibleValue(text="West side")) + setattr(cls, "South side", + PermissibleValue(text="South side")) + setattr(cls, "East side", + PermissibleValue(text="East side")) - drill = PermissibleValue(text="drill") - chisel = PermissibleValue(text="chisel") - tined = PermissibleValue(text="tined") - mouldboard = PermissibleValue(text="mouldboard") +class SampWeatherEnum(EnumDefinitionImpl): + + cloudy = PermissibleValue(text="cloudy") + foggy = PermissibleValue(text="foggy") + hail = PermissibleValue(text="hail") + rain = PermissibleValue(text="rain") + snow = PermissibleValue(text="snow") + sleet = PermissibleValue(text="sleet") + sunny = PermissibleValue(text="sunny") + windy = PermissibleValue(text="windy") _defn = EnumDefinition( - name="TillageEnum", + name="SampWeatherEnum", ) @classmethod def _addvals(cls): - setattr(cls, "cutting disc", - PermissibleValue(text="cutting disc")) - setattr(cls, "ridge till", - PermissibleValue(text="ridge till")) - setattr(cls, "strip tillage", - PermissibleValue(text="strip tillage")) - setattr(cls, "zonal tillage", - PermissibleValue(text="zonal tillage")) - setattr(cls, "disc plough", - PermissibleValue(text="disc plough")) + setattr(cls, "clear sky", + PermissibleValue(text="clear sky")) -class HeatDelivLocEnum(EnumDefinitionImpl): +class RoomConnectedEnum(EnumDefinitionImpl): - north = PermissibleValue(text="north") - south = PermissibleValue(text="south") - east = PermissibleValue(text="east") - west = PermissibleValue(text="west") + attic = PermissibleValue(text="attic") + bathroom = PermissibleValue(text="bathroom") + closet = PermissibleValue(text="closet") + elevator = PermissibleValue(text="elevator") + hallway = PermissibleValue(text="hallway") + kitchen = PermissibleValue(text="kitchen") + office = PermissibleValue(text="office") + stairwell = PermissibleValue(text="stairwell") _defn = EnumDefinition( - name="HeatDelivLocEnum", + name="RoomConnectedEnum", ) -class HandidnessEnum(EnumDefinitionImpl): + @classmethod + def _addvals(cls): + setattr(cls, "conference room", + PermissibleValue(text="conference room")) + setattr(cls, "examining room", + PermissibleValue(text="examining room")) + setattr(cls, "mail room", + PermissibleValue(text="mail room")) - ambidexterity = PermissibleValue(text="ambidexterity") +class GenderRestroomEnum(EnumDefinitionImpl): + + female = PermissibleValue(text="female") + male = PermissibleValue(text="male") + unisex = PermissibleValue(text="unisex") _defn = EnumDefinition( - name="HandidnessEnum", + name="GenderRestroomEnum", ) @classmethod def _addvals(cls): - setattr(cls, "left handedness", - PermissibleValue(text="left handedness")) - setattr(cls, "mixed-handedness", - PermissibleValue(text="mixed-handedness")) - setattr(cls, "right handedness", - PermissibleValue(text="right handedness")) + setattr(cls, "all gender", + PermissibleValue(text="all gender")) + setattr(cls, "gender neurtral", + PermissibleValue(text="gender neurtral")) + setattr(cls, "male and female", + PermissibleValue(text="male and female")) -class HcrEnum(EnumDefinitionImpl): +class HostSexEnum(EnumDefinitionImpl): - Coalbed = PermissibleValue(text="Coalbed") - Shale = PermissibleValue(text="Shale") - other = PermissibleValue(text="other") + female = PermissibleValue(text="female") + hermaphrodite = PermissibleValue(text="hermaphrodite") + male = PermissibleValue(text="male") + neuter = PermissibleValue(text="neuter") _defn = EnumDefinition( - name="HcrEnum", + name="HostSexEnum", ) - @classmethod - def _addvals(cls): - setattr(cls, "Oil Reservoir", - PermissibleValue(text="Oil Reservoir")) - setattr(cls, "Gas Reservoir", - PermissibleValue(text="Gas Reservoir")) - setattr(cls, "Oil Sand", - PermissibleValue(text="Oil Sand")) - setattr(cls, "Tight Oil Reservoir", - PermissibleValue(text="Tight Oil Reservoir")) - setattr(cls, "Tight Gas Reservoir", - PermissibleValue(text="Tight Gas Reservoir")) +class WeekdayEnum(EnumDefinitionImpl): -class WindowLocEnum(EnumDefinitionImpl): + Monday = PermissibleValue(text="Monday") + Tuesday = PermissibleValue(text="Tuesday") + Wednesday = PermissibleValue(text="Wednesday") + Thursday = PermissibleValue(text="Thursday") + Friday = PermissibleValue(text="Friday") + Saturday = PermissibleValue(text="Saturday") + Sunday = PermissibleValue(text="Sunday") - north = PermissibleValue(text="north") - south = PermissibleValue(text="south") - east = PermissibleValue(text="east") - west = PermissibleValue(text="west") + _defn = EnumDefinition( + name="WeekdayEnum", + ) + +class SurfAirContEnum(EnumDefinitionImpl): + + dust = PermissibleValue(text="dust") + radon = PermissibleValue(text="radon") + nutrients = PermissibleValue(text="nutrients") + biocides = PermissibleValue(text="biocides") _defn = EnumDefinition( - name="WindowLocEnum", + name="SurfAirContEnum", ) -class GenderRestroomEnum(EnumDefinitionImpl): + @classmethod + def _addvals(cls): + setattr(cls, "organic matter", + PermissibleValue(text="organic matter")) + setattr(cls, "particulate matter", + PermissibleValue(text="particulate matter")) + setattr(cls, "volatile organic compounds", + PermissibleValue(text="volatile organic compounds")) + setattr(cls, "biological contaminants", + PermissibleValue(text="biological contaminants")) - female = PermissibleValue(text="female") - male = PermissibleValue(text="male") - unisex = PermissibleValue(text="unisex") +class FilterTypeEnum(EnumDefinitionImpl): + + HEPA = PermissibleValue(text="HEPA") + electrostatic = PermissibleValue(text="electrostatic") _defn = EnumDefinition( - name="GenderRestroomEnum", + name="FilterTypeEnum", ) @classmethod def _addvals(cls): - setattr(cls, "all gender", - PermissibleValue(text="all gender")) - setattr(cls, "gender neurtral", - PermissibleValue(text="gender neurtral")) - setattr(cls, "male and female", - PermissibleValue(text="male and female")) + setattr(cls, "particulate air filter", + PermissibleValue(text="particulate air filter")) + setattr(cls, "chemical air filter", + PermissibleValue(text="chemical air filter")) + setattr(cls, "low-MERV pleated media", + PermissibleValue(text="low-MERV pleated media")) + setattr(cls, "gas-phase or ultraviolet air treatments", + PermissibleValue(text="gas-phase or ultraviolet air treatments")) -class CeilTextureEnum(EnumDefinitionImpl): +class LightTypeEnum(EnumDefinitionImpl): - knockdown = PermissibleValue(text="knockdown") - popcorn = PermissibleValue(text="popcorn") - smooth = PermissibleValue(text="smooth") - swirl = PermissibleValue(text="swirl") + none = PermissibleValue(text="none") _defn = EnumDefinition( - name="CeilTextureEnum", + name="LightTypeEnum", ) @classmethod def _addvals(cls): - setattr(cls, "crows feet", - PermissibleValue(text="crows feet")) - setattr(cls, "crows-foot stomp", - PermissibleValue(text="crows-foot stomp")) - setattr(cls, "double skip", - PermissibleValue(text="double skip")) - setattr(cls, "hawk and trowel", - PermissibleValue(text="hawk and trowel")) - setattr(cls, "orange peel", - PermissibleValue(text="orange peel")) - setattr(cls, "rosebud stomp", - PermissibleValue(text="rosebud stomp")) - setattr(cls, "Santa-Fe texture", - PermissibleValue(text="Santa-Fe texture")) - setattr(cls, "skip trowel", - PermissibleValue(text="skip trowel")) - setattr(cls, "stomp knockdown", - PermissibleValue(text="stomp knockdown")) + setattr(cls, "natural light", + PermissibleValue(text="natural light")) + setattr(cls, "electric light", + PermissibleValue(text="electric light")) + setattr(cls, "desk lamp", + PermissibleValue(text="desk lamp")) + setattr(cls, "flourescent lights", + PermissibleValue(text="flourescent lights")) -class TrainStatLocEnum(EnumDefinitionImpl): +class ArchStrucEnum(EnumDefinitionImpl): - riverside = PermissibleValue(text="riverside") + building = PermissibleValue(text="building") + shed = PermissibleValue(text="shed") + home = PermissibleValue(text="home") _defn = EnumDefinition( - name="TrainStatLocEnum", + name="ArchStrucEnum", + ) + +class WallConstTypeEnum(EnumDefinitionImpl): + + _defn = EnumDefinition( + name="WallConstTypeEnum", ) @classmethod def _addvals(cls): - setattr(cls, "south station above ground", - PermissibleValue(text="south station above ground")) - setattr(cls, "south station underground", - PermissibleValue(text="south station underground")) - setattr(cls, "south station amtrak", - PermissibleValue(text="south station amtrak")) - setattr(cls, "forest hills", - PermissibleValue(text="forest hills")) + setattr(cls, "frame construction", + PermissibleValue(text="frame construction")) + setattr(cls, "joisted masonry", + PermissibleValue(text="joisted masonry")) + setattr(cls, "light noncombustible", + PermissibleValue(text="light noncombustible")) + setattr(cls, "masonry noncombustible", + PermissibleValue(text="masonry noncombustible")) + setattr(cls, "modified fire resistive", + PermissibleValue(text="modified fire resistive")) + setattr(cls, "fire resistive", + PermissibleValue(text="fire resistive")) -class PlantSexEnum(EnumDefinitionImpl): +class OccupDocumentEnum(EnumDefinitionImpl): - Androdioecious = PermissibleValue(text="Androdioecious") - Androecious = PermissibleValue(text="Androecious") - Androgynous = PermissibleValue(text="Androgynous") - Androgynomonoecious = PermissibleValue(text="Androgynomonoecious") - Andromonoecious = PermissibleValue(text="Andromonoecious") - Bisexual = PermissibleValue(text="Bisexual") - Dichogamous = PermissibleValue(text="Dichogamous") - Diclinous = PermissibleValue(text="Diclinous") - Dioecious = PermissibleValue(text="Dioecious") - Gynodioecious = PermissibleValue(text="Gynodioecious") - Gynoecious = PermissibleValue(text="Gynoecious") - Gynomonoecious = PermissibleValue(text="Gynomonoecious") - Hermaphroditic = PermissibleValue(text="Hermaphroditic") - Imperfect = PermissibleValue(text="Imperfect") - Monoclinous = PermissibleValue(text="Monoclinous") - Monoecious = PermissibleValue(text="Monoecious") - Perfect = PermissibleValue(text="Perfect") - Polygamodioecious = PermissibleValue(text="Polygamodioecious") - Polygamomonoecious = PermissibleValue(text="Polygamomonoecious") - Polygamous = PermissibleValue(text="Polygamous") - Protandrous = PermissibleValue(text="Protandrous") - Protogynous = PermissibleValue(text="Protogynous") - Subandroecious = PermissibleValue(text="Subandroecious") - Subdioecious = PermissibleValue(text="Subdioecious") - Subgynoecious = PermissibleValue(text="Subgynoecious") - Synoecious = PermissibleValue(text="Synoecious") - Trimonoecious = PermissibleValue(text="Trimonoecious") - Trioecious = PermissibleValue(text="Trioecious") - Unisexual = PermissibleValue(text="Unisexual") + estimate = PermissibleValue(text="estimate") + videos = PermissibleValue(text="videos") _defn = EnumDefinition( - name="PlantSexEnum", + name="OccupDocumentEnum", ) -class DoorLocEnum(EnumDefinitionImpl): + @classmethod + def _addvals(cls): + setattr(cls, "automated count", + PermissibleValue(text="automated count")) + setattr(cls, "manual count", + PermissibleValue(text="manual count")) - north = PermissibleValue(text="north") - south = PermissibleValue(text="south") - east = PermissibleValue(text="east") - west = PermissibleValue(text="west") +class DrainageClassEnum(EnumDefinitionImpl): + + poorly = PermissibleValue(text="poorly") + well = PermissibleValue(text="well") _defn = EnumDefinition( - name="DoorLocEnum", + name="DrainageClassEnum", ) + @classmethod + def _addvals(cls): + setattr(cls, "very poorly", + PermissibleValue(text="very poorly")) + setattr(cls, "somewhat poorly", + PermissibleValue(text="somewhat poorly")) + setattr(cls, "moderately well", + PermissibleValue(text="moderately well")) + setattr(cls, "excessively drained", + PermissibleValue(text="excessively drained")) + class RoomTypeEnum(EnumDefinitionImpl): attic = PermissibleValue(text="attic") @@ -8146,24 +8013,156 @@ def _addvals(cls): setattr(cls, "data center", PermissibleValue(text="data center")) -class SampCaptStatusEnum(EnumDefinitionImpl): +class RoomLocEnum(EnumDefinitionImpl): - other = PermissibleValue(text="other") + _defn = EnumDefinition( + name="RoomLocEnum", + ) + + @classmethod + def _addvals(cls): + setattr(cls, "corner room", + PermissibleValue(text="corner room")) + setattr(cls, "interior room", + PermissibleValue(text="interior room")) + setattr(cls, "exterior wall", + PermissibleValue(text="exterior wall")) + +class IntWallCondEnum(EnumDefinitionImpl): + + new = PermissibleValue(text="new") + damaged = PermissibleValue(text="damaged") + rupture = PermissibleValue(text="rupture") _defn = EnumDefinition( - name="SampCaptStatusEnum", + name="IntWallCondEnum", ) @classmethod def _addvals(cls): - setattr(cls, "active surveillance in response to an outbreak", - PermissibleValue(text="active surveillance in response to an outbreak")) - setattr(cls, "active surveillance not initiated by an outbreak", - PermissibleValue(text="active surveillance not initiated by an outbreak")) - setattr(cls, "farm sample", - PermissibleValue(text="farm sample")) - setattr(cls, "market sample", - PermissibleValue(text="market sample")) + setattr(cls, "visible wear", + PermissibleValue(text="visible wear")) + setattr(cls, "needs repair", + PermissibleValue(text="needs repair")) + +class CurLandUseEnum(EnumDefinitionImpl): + + badlands = PermissibleValue(text="badlands") + cities = PermissibleValue(text="cities") + conifers = PermissibleValue(text="conifers") + farmstead = PermissibleValue(text="farmstead") + gravel = PermissibleValue(text="gravel") + hardwoods = PermissibleValue(text="hardwoods") + hayland = PermissibleValue(text="hayland") + marshlands = PermissibleValue(text="marshlands") + meadows = PermissibleValue(text="meadows") + mudflats = PermissibleValue(text="mudflats") + pastureland = PermissibleValue(text="pastureland") + rainforest = PermissibleValue(text="rainforest") + rangeland = PermissibleValue(text="rangeland") + rock = PermissibleValue(text="rock") + sand = PermissibleValue(text="sand") + swamp = PermissibleValue(text="swamp") + tropical = PermissibleValue(text="tropical") + tundra = PermissibleValue(text="tundra") + + _defn = EnumDefinition( + name="CurLandUseEnum", + ) + + @classmethod + def _addvals(cls): + setattr(cls, "crop trees", + PermissibleValue(text="crop trees")) + setattr(cls, "horticultural plants", + PermissibleValue(text="horticultural plants")) + setattr(cls, "industrial areas", + PermissibleValue(text="industrial areas")) + setattr(cls, "intermixed hardwood and conifers", + PermissibleValue(text="intermixed hardwood and conifers")) + setattr(cls, "mines/quarries", + PermissibleValue(text="mines/quarries")) + setattr(cls, "oil waste areas", + PermissibleValue(text="oil waste areas")) + setattr(cls, "permanent snow or ice", + PermissibleValue(text="permanent snow or ice")) + setattr(cls, "roads/railroads", + PermissibleValue(text="roads/railroads")) + setattr(cls, "row crops", + PermissibleValue(text="row crops")) + setattr(cls, "saline seeps", + PermissibleValue(text="saline seeps")) + setattr(cls, "salt flats", + PermissibleValue(text="salt flats")) + setattr(cls, "shrub crops", + PermissibleValue(text="shrub crops")) + setattr(cls, "shrub land", + PermissibleValue(text="shrub land")) + setattr(cls, "small grains", + PermissibleValue(text="small grains")) + setattr(cls, "successional shrub land", + PermissibleValue(text="successional shrub land")) + setattr(cls, "vegetable crops", + PermissibleValue(text="vegetable crops")) + setattr(cls, "vine crops", + PermissibleValue(text="vine crops")) + +class DoorMatEnum(EnumDefinitionImpl): + + aluminum = PermissibleValue(text="aluminum") + fiberboard = PermissibleValue(text="fiberboard") + fiberglass = PermissibleValue(text="fiberglass") + metal = PermissibleValue(text="metal") + vinyl = PermissibleValue(text="vinyl") + wood = PermissibleValue(text="wood") + + _defn = EnumDefinition( + name="DoorMatEnum", + ) + + @classmethod + def _addvals(cls): + setattr(cls, "cellular PVC", + PermissibleValue(text="cellular PVC")) + setattr(cls, "engineered plastic", + PermissibleValue(text="engineered plastic")) + setattr(cls, "thermoplastic alloy", + PermissibleValue(text="thermoplastic alloy")) + setattr(cls, "wood/plastic composite", + PermissibleValue(text="wood/plastic composite")) + +class FaoClassEnum(EnumDefinitionImpl): + + Acrisols = PermissibleValue(text="Acrisols") + Andosols = PermissibleValue(text="Andosols") + Arenosols = PermissibleValue(text="Arenosols") + Cambisols = PermissibleValue(text="Cambisols") + Chernozems = PermissibleValue(text="Chernozems") + Ferralsols = PermissibleValue(text="Ferralsols") + Fluvisols = PermissibleValue(text="Fluvisols") + Gleysols = PermissibleValue(text="Gleysols") + Greyzems = PermissibleValue(text="Greyzems") + Gypsisols = PermissibleValue(text="Gypsisols") + Histosols = PermissibleValue(text="Histosols") + Kastanozems = PermissibleValue(text="Kastanozems") + Lithosols = PermissibleValue(text="Lithosols") + Luvisols = PermissibleValue(text="Luvisols") + Nitosols = PermissibleValue(text="Nitosols") + Phaeozems = PermissibleValue(text="Phaeozems") + Planosols = PermissibleValue(text="Planosols") + Podzols = PermissibleValue(text="Podzols") + Podzoluvisols = PermissibleValue(text="Podzoluvisols") + Rankers = PermissibleValue(text="Rankers") + Regosols = PermissibleValue(text="Regosols") + Rendzinas = PermissibleValue(text="Rendzinas") + Solonchaks = PermissibleValue(text="Solonchaks") + Solonetz = PermissibleValue(text="Solonetz") + Vertisols = PermissibleValue(text="Vertisols") + Yermosols = PermissibleValue(text="Yermosols") + + _defn = EnumDefinition( + name="FaoClassEnum", + ) class SampleTypeEnum(EnumDefinitionImpl): @@ -10432,27 +10431,27 @@ class slots: slots.sequencing_field = Slot(uri=MIXS.sequencing_field, name="sequencing field", curie=MIXS.curie('sequencing_field'), model_uri=NMDC.sequencing_field, domain=None, range=Optional[str]) -slots.has_numeric_value = Slot(uri=MIXS.has_numeric_value, name="has numeric value", curie=MIXS.curie('has_numeric_value'), - model_uri=NMDC.has_numeric_value, domain=None, range=Optional[float]) +slots.environment_field = Slot(uri=MIXS.environment_field, name="environment field", curie=MIXS.curie('environment_field'), + model_uri=NMDC.environment_field, domain=None, range=Optional[str]) slots.investigation_field = Slot(uri=MIXS.investigation_field, name="investigation field", curie=MIXS.curie('investigation_field'), model_uri=NMDC.investigation_field, domain=None, range=Optional[str]) -slots.core_field = Slot(uri=MIXS.core_field, name="core field", curie=MIXS.curie('core_field'), - model_uri=NMDC.core_field, domain=None, range=Optional[str]) +slots.has_numeric_value = Slot(uri=MIXS.has_numeric_value, name="has numeric value", curie=MIXS.curie('has_numeric_value'), + model_uri=NMDC.has_numeric_value, domain=None, range=Optional[float]) + +slots.has_raw_value = Slot(uri=MIXS.has_raw_value, name="has raw value", curie=MIXS.curie('has_raw_value'), + model_uri=NMDC.has_raw_value, domain=None, range=Optional[str]) slots.nucleic_acid_sequence_source_field = Slot(uri=MIXS.nucleic_acid_sequence_source_field, name="nucleic acid sequence source field", curie=MIXS.curie('nucleic_acid_sequence_source_field'), model_uri=NMDC.nucleic_acid_sequence_source_field, domain=None, range=Optional[str]) -slots.environment_field = Slot(uri=MIXS.environment_field, name="environment field", curie=MIXS.curie('environment_field'), - model_uri=NMDC.environment_field, domain=None, range=Optional[str]) +slots.core_field = Slot(uri=MIXS.core_field, name="core field", curie=MIXS.curie('core_field'), + model_uri=NMDC.core_field, domain=None, range=Optional[str]) slots.has_unit = Slot(uri=MIXS.has_unit, name="has unit", curie=MIXS.curie('has_unit'), model_uri=NMDC.has_unit, domain=None, range=Optional[str]) -slots.has_raw_value = Slot(uri=MIXS.has_raw_value, name="has raw value", curie=MIXS.curie('has_raw_value'), - model_uri=NMDC.has_raw_value, domain=None, range=Optional[str]) - slots.emsl_store_temp = Slot(uri=NMDC.emsl_store_temp, name="emsl_store_temp", curie=NMDC.curie('emsl_store_temp'), model_uri=NMDC.emsl_store_temp, domain=None, range=Optional[str]) diff --git a/nmdc_schema/nmdc.schema.json b/nmdc_schema/nmdc.schema.json index c6a20a5d12..17657e8225 100644 --- a/nmdc_schema/nmdc.schema.json +++ b/nmdc_schema/nmdc.schema.json @@ -7755,7 +7755,7 @@ "type": "string" } }, - "$id": "https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc", + "$id": "https://w3id.org/nmdc/nmdc", "$schema": "http://json-schema.org/draft-07/schema#", "additionalProperties": true, "description": "An abstract holder for any set of metadata and data. It does not need to correspond to an actual managed database top level holder class. When translated to JSON-Schema this is the 'root' object. It should contain pointers to other objects of interest", @@ -7954,5 +7954,5 @@ }, "title": "NMDC", "type": "object", - "version": "v7.6.1" + "version": "v7.6.2" } \ No newline at end of file diff --git a/nmdc_schema/nmdc_materialized_patterns.schema.json b/nmdc_schema/nmdc_materialized_patterns.schema.json index 4d18e1cbf6..d62735225a 100644 --- a/nmdc_schema/nmdc_materialized_patterns.schema.json +++ b/nmdc_schema/nmdc_materialized_patterns.schema.json @@ -7783,7 +7783,7 @@ "type": "string" } }, - "$id": "https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc", + "$id": "https://w3id.org/nmdc/nmdc", "$schema": "http://json-schema.org/draft-07/schema#", "additionalProperties": false, "description": "An abstract holder for any set of metadata and data. It does not need to correspond to an actual managed database top level holder class. When translated to JSON-Schema this is the 'root' object. It should contain pointers to other objects of interest", @@ -7982,5 +7982,5 @@ }, "title": "NMDC", "type": "object", - "version": "v7.6.1" + "version": "v7.6.2" } diff --git a/nmdc_schema/nmdc_materialized_patterns.yaml b/nmdc_schema/nmdc_materialized_patterns.yaml index 07db5bbdef..2194aa261e 100644 --- a/nmdc_schema/nmdc_materialized_patterns.yaml +++ b/nmdc_schema/nmdc_materialized_patterns.yaml @@ -12,43 +12,61 @@ notes: need better understanding of id patterns (at least) - commented out several MIxS terms assigned to Biosample because the definitions of those terms were commented out in mixs.yaml dues to shared slot uris -id: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc -version: v7.6.1 +id: https://w3id.org/nmdc/nmdc +version: v7.6.2 license: https://creativecommons.org/publicdomain/zero/1.0/ prefixes: + EFO: + prefix_prefix: EFO + prefix_reference: http://www.ebi.ac.uk/efo/ + ISA: + prefix_prefix: ISA + prefix_reference: http://example.com/isa/ + MetaNetX: + prefix_prefix: MetaNetX + prefix_reference: http://example.com/metanetx/ + RetroRules: + prefix_prefix: RetroRules + prefix_reference: http://example.com/retrorules/ emsl.project: prefix_prefix: emsl.project - prefix_reference: 'https://bioregistry.io/reference/emsl.project:' + prefix_reference: 'https://bioregistry.io/emsl.project:' + generic: + prefix_prefix: generic + prefix_reference: https://example.com/generic/ gnps.task: prefix_prefix: gnps.task - prefix_reference: 'https://bioregistry.io/reference/gnps.task:' + prefix_reference: 'https://bioregistry.io/gnps.task:' + gtpo: + prefix_prefix: gtpo + prefix_reference: http://example.com/gtpo/ + igsn: + prefix_prefix: igsn + prefix_reference: https://app.geosamples.org/sample/igsn/ jgi.proposal: prefix_prefix: jgi.proposal - prefix_reference: 'https://bioregistry.io/reference/jgi.proposal:' + prefix_reference: 'https://bioregistry.io/jgi.proposal:' + jgi: + prefix_prefix: jgi + prefix_reference: http://example.com/jgi/ + linkml: + prefix_prefix: linkml + prefix_reference: https://w3id.org/linkml/ + mgnify.proj: + prefix_prefix: mgnify.proj + prefix_reference: 'https://identifiers.org/mgnify.proj:' neon.identifier: prefix_prefix: neon.identifier prefix_reference: http://example.org/neon/identifier/ neon.schema: prefix_prefix: neon.schema prefix_reference: http://example.org/neon/schema/ - generic: - prefix_prefix: generic - prefix_reference: https://example.com/generic/ - linkml: - prefix_prefix: linkml - prefix_reference: https://w3id.org/linkml/ nmdc: prefix_prefix: nmdc prefix_reference: https://w3id.org/nmdc/ - nmdc_yaml: - prefix_prefix: nmdc_yaml - prefix_reference: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/ skos: prefix_prefix: skos prefix_reference: http://www.w3.org/2004/02/skos/core# - igsn: - prefix_prefix: igsn - prefix_reference: https://app.geosamples.org/sample/igsn/ prov: prefix_prefix: prov prefix_reference: http://www.w3.org/ns/prov# @@ -61,27 +79,6 @@ prefixes: xsd: prefix_prefix: xsd prefix_reference: http://www.w3.org/2001/XMLSchema# - EFO: - prefix_prefix: EFO - prefix_reference: http://identifiers.org/efo/ - MetaNetX: - prefix_prefix: MetaNetX - prefix_reference: http://example.com/metanetx/ - ISA: - prefix_prefix: ISA - prefix_reference: http://example.com/isa/ - RetroRules: - prefix_prefix: RetroRules - prefix_reference: http://example.com/retrorules/ - gtpo: - prefix_prefix: gtpo - prefix_reference: http://example.com/gtpo/ - jgi: - prefix_prefix: jgi - prefix_reference: http://example.com/jgi/ - mgnify.proj: - prefix_prefix: mgnify.proj - prefix_reference: 'https://identifiers.org/mgnify.proj:' KEGG.COMPOUND: prefix_prefix: KEGG.COMPOUND prefix_reference: http://identifiers.org/kegg.compound/ @@ -129,10 +126,10 @@ prefixes: prefix_reference: https://raw.githubusercontent.com/microbiomedata/mixs/main/model/schema/ COG: prefix_prefix: COG - prefix_reference: 'https://bioregistry.io/reference/cog:' + prefix_reference: 'https://bioregistry.io/cog:' EC: prefix_prefix: EC - prefix_reference: 'https://bioregistry.io/reference/eccode:' + prefix_reference: 'https://bioregistry.io/eccode:' GO: prefix_prefix: GO prefix_reference: http://purl.obolibrary.org/obo/GO_ @@ -169,52 +166,52 @@ subsets: name: sample subset description: Subset consisting of entities linked to the processing of samples. Currently, this subset consists of study, omics process, and biosample. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc data object subset: name: data object subset description: Subset consisting of the data objects that either inputs or outputs of processes or workflows. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc workflow subset: name: workflow subset description: Subset consisting of just the workflow execution activities - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc environment: name: environment - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc investigation: name: investigation - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc nucleic acid sequence source: name: nucleic acid sequence source - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc sequencing: name: sequencing - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixs_environmental_triad: name: mixs_environmental_triad title: MIxS Environmental Triad - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixs extension: name: mixs extension - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc checklist: name: checklist description: A MIxS checklist. These can be combined with packages - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc package: name: package description: A MIxS package. These can be combined with checklists - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc checklist_package_combination: name: checklist_package_combination description: A combination of a checklist and a package - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc types: bytes: name: bytes description: An integer value that corresponds to a size in bytes - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - UO:0000233 base: int @@ -222,7 +219,7 @@ types: decimal degree: name: decimal degree description: A decimal degree expresses latitude or longitude as decimal fractions. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://en.wikipedia.org/wiki/Decimal_degrees base: float @@ -230,14 +227,14 @@ types: language code: name: language code description: A language code conforming to ISO_639-1 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://en.wikipedia.org/wiki/ISO_639-1 base: str uri: xsd:language unit: name: unit - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mappings: - qud:Unit - UO:0000000 @@ -246,7 +243,7 @@ types: external identifier: name: external identifier description: A CURIE representing an external identifier - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://microbiomedata.github.io/nmdc-schema/identifiers.html typeof: uriorcurie @@ -254,7 +251,7 @@ types: string: name: string description: A character string - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc exact_mappings: - schema:Text base: str @@ -262,7 +259,7 @@ types: integer: name: integer description: An integer - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc exact_mappings: - schema:Integer base: int @@ -270,7 +267,7 @@ types: boolean: name: boolean description: A binary (true or false) value - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc exact_mappings: - schema:Boolean base: Bool @@ -279,7 +276,7 @@ types: float: name: float description: A real number that conforms to the xsd:float specification - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc exact_mappings: - schema:Float base: float @@ -287,7 +284,7 @@ types: double: name: double description: A real number that conforms to the xsd:double specification - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc close_mappings: - schema:Float base: float @@ -296,7 +293,7 @@ types: name: decimal description: A real number with arbitrary precision that conforms to the xsd:decimal specification - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc broad_mappings: - schema:Number base: Decimal @@ -307,7 +304,7 @@ types: particular day notes: - URI is dateTime because OWL reasoners do not work with straight date or time - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc exact_mappings: - schema:Time base: XSDTime @@ -318,7 +315,7 @@ types: description: a date (year, month and day) in an idealized calendar notes: - URI is dateTime because OWL reasoners don't work with straight date or time - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc exact_mappings: - schema:Date base: XSDDate @@ -327,7 +324,7 @@ types: datetime: name: datetime description: The combination of a date and time - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc exact_mappings: - schema:DateTime base: XSDDateTime @@ -336,14 +333,14 @@ types: date_or_datetime: name: date_or_datetime description: Either a date or a datetime - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc base: str uri: linkml:DateOrDatetime repr: str uriorcurie: name: uriorcurie description: a URI or a CURIE - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc base: URIorCURIE uri: xsd:anyURI repr: str @@ -354,7 +351,7 @@ types: comments: - in RDF serializations this MUST be expanded to a URI - in non-RDF serializations MAY be serialized as the compact representation - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc base: Curie uri: xsd:string repr: str @@ -366,7 +363,7 @@ types: - in RDF serializations a slot with range of uri is treated as a literal or type xsd:anyURI unless it is an identifier or a reference to an identifier, in which case it is translated directly to a node - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc close_mappings: - schema:URL base: URI @@ -375,7 +372,7 @@ types: ncname: name: ncname description: Prefix part of CURIE - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc base: NCName uri: xsd:string repr: str @@ -384,21 +381,21 @@ types: description: A URI or CURIE that represents an object in the model. comments: - Used for inheritence and type checking - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc base: ElementIdentifier uri: shex:iri repr: str nodeidentifier: name: nodeidentifier description: A URI, CURIE or BNODE that represents a node in a model. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc base: NodeIdentifier uri: shex:nonLiteral repr: str enums: StatusEnum: name: StatusEnum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: pass: text: pass @@ -406,7 +403,7 @@ enums: text: fail ExtractionTargetEnum: name: ExtractionTargetEnum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: DNA: text: DNA @@ -418,7 +415,7 @@ enums: text: protein LibraryTypeEnum: name: LibraryTypeEnum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: DNA: text: DNA @@ -426,7 +423,7 @@ enums: text: RNA JgiContTypeEnum: name: JgiContTypeEnum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: plate: text: plate @@ -435,7 +432,7 @@ enums: YesNoEnum: name: YesNoEnum description: replaces DnaDnaseEnum and DnaseRnaEnum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: 'no': text: 'no' @@ -451,7 +448,7 @@ enums: - They might also be applicable to other classes - They are intended to enable metadata search and or filtering, for example in the NMDC data portal, https://data.microbiomedata.org/ - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - category tag permissible_values: @@ -478,7 +475,7 @@ enums: title: National Science Foundation's National Ecological Observatory Network file type enum: name: file type enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: Metagenome Raw Reads: text: Metagenome Raw Reads @@ -865,7 +862,7 @@ enums: name: credit enum comments: - credit enums come from https://casrai.org/credit/ - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: Conceptualization: text: Conceptualization @@ -923,7 +920,7 @@ enums: notes: - This will become the range of processing_institution.omics processing - use ROR meanings like https://ror.org/0168r3w48 for UCSD - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: UCSD: text: UCSD @@ -951,7 +948,7 @@ enums: ContainerTypeEnum: name: ContainerTypeEnum title: Container type enumeration - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: screw_top_conical: text: screw_top_conical @@ -961,7 +958,7 @@ enums: DeviceTypeEnum: name: DeviceTypeEnum title: Shaker type enumeration - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: orbital_shaker: text: orbital_shaker @@ -971,7 +968,7 @@ enums: title: Thermomixer SamplingMethodEnum: name: SamplingMethodEnum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: weighing: text: weighing @@ -979,7 +976,7 @@ enums: SolventEnum: name: SolventEnum title: Solvent enumeration - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: deionized_water: text: deionized_water @@ -996,7 +993,7 @@ enums: title: Chloroform analysis_type_enum: name: analysis_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: metabolomics: text: metabolomics @@ -1010,7 +1007,7 @@ enums: text: natural organic matter rna_sample_format_enum: name: rna_sample_format_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: 10 mM Tris-HCl: text: 10 mM Tris-HCl @@ -1038,7 +1035,7 @@ enums: text: Gentegra-RNA dna_sample_format_enum: name: dna_sample_format_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: 10 mM Tris-HCl: text: 10 mM Tris-HCl @@ -1066,27 +1063,87 @@ enums: text: Gentegra-RNA sample_type_enum: name: sample_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: soil: text: soil water_extract_soil: text: water_extract_soil - door_comp_type_enum: - name: door_comp_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + wall_loc_enum: + name: wall_loc_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - metal covered: - text: metal covered - revolving: - text: revolving - sliding: - text: sliding - telescopic: - text: telescopic + north: + text: north + south: + text: south + east: + text: east + west: + text: west + wall_texture_enum: + name: wall_texture_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + crows feet: + text: crows feet + crows-foot stomp: + text: crows-foot stomp + ? '' + : text: '' + double skip: + text: double skip + hawk and trowel: + text: hawk and trowel + knockdown: + text: knockdown + popcorn: + text: popcorn + orange peel: + text: orange peel + rosebud stomp: + text: rosebud stomp + Santa-Fe texture: + text: Santa-Fe texture + skip trowel: + text: skip trowel + smooth: + text: smooth + stomp knockdown: + text: stomp knockdown + swirl: + text: swirl + door_type_metal_enum: + name: door_type_metal_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + collapsible: + text: collapsible + corrugated steel: + text: corrugated steel + hollow: + text: hollow + rolling shutters: + text: rolling shutters + steel plate: + text: steel plate + water_feat_type_enum: + name: water_feat_type_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + fountain: + text: fountain + pool: + text: pool + standing feature: + text: standing feature + stream: + text: stream + waterfall: + text: waterfall organism_count_enum: name: organism_count_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: ATP: text: ATP @@ -1094,167 +1151,121 @@ enums: text: MPN other: text: other - light_type_enum: - name: light_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - natural light: - text: natural light - electric light: - text: electric light - desk lamp: - text: desk lamp - flourescent lights: - text: flourescent lights - none: - text: none - freq_clean_enum: - name: freq_clean_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + growth_habit_enum: + name: growth_habit_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Daily: - text: Daily - Weekly: - text: Weekly - Monthly: - text: Monthly - Quarterly: - text: Quarterly - Annually: - text: Annually - other: - text: other - substructure_type_enum: - name: substructure_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + erect: + text: erect + semi-erect: + text: semi-erect + spreading: + text: spreading + prostrate: + text: prostrate + room_samp_pos_enum: + name: room_samp_pos_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - crawlspace: - text: crawlspace - slab on grade: - text: slab on grade - basement: - text: basement - depos_env_enum: - name: depos_env_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + north corner: + text: north corner + south corner: + text: south corner + west corner: + text: west corner + east corner: + text: east corner + northeast corner: + text: northeast corner + northwest corner: + text: northwest corner + southeast corner: + text: southeast corner + southwest corner: + text: southwest corner + center: + text: center + rel_samp_loc_enum: + name: rel_samp_loc_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Continental - Alluvial: - text: Continental - Alluvial - Continental - Aeolian: - text: Continental - Aeolian - Continental - Fluvial: - text: Continental - Fluvial - Continental - Lacustrine: - text: Continental - Lacustrine - Transitional - Deltaic: - text: Transitional - Deltaic - Transitional - Tidal: - text: Transitional - Tidal - Transitional - Lagoonal: - text: Transitional - Lagoonal - Transitional - Beach: - text: Transitional - Beach - Transitional - Lake: - text: Transitional - Lake - Marine - Shallow: - text: Marine - Shallow - Marine - Deep: - text: Marine - Deep - Marine - Reef: - text: Marine - Reef - Other - Evaporite: - text: Other - Evaporite - Other - Glacial: - text: Other - Glacial - Other - Volcanic: - text: Other - Volcanic - other: - text: other - shading_device_cond_enum: - name: shading_device_cond_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + edge of car: + text: edge of car + center of car: + text: center of car + under a seat: + text: under a seat + wall_surf_treatment_enum: + name: wall_surf_treatment_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - damaged: - text: damaged - needs repair: - text: needs repair - new: - text: new - rupture: - text: rupture - visible wear: - text: visible wear - quad_pos_enum: - name: quad_pos_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - North side: - text: North side - West side: - text: West side - South side: - text: South side - East side: - text: East side - samp_floor_enum: - name: samp_floor_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - 1st floor: - text: 1st floor - 2nd floor: - text: 2nd floor - basement: - text: basement - lobby: - text: lobby - floor_cond_enum: - name: floor_cond_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + painted: + text: painted + wall paper: + text: wall paper + no treatment: + text: no treatment + paneling: + text: paneling + stucco: + text: stucco + fabric: + text: fabric + train_line_enum: + name: train_line_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - new: - text: new - visible wear: - text: visible wear - needs repair: - text: needs repair - damaged: - text: damaged - rupture: - text: rupture - specific_enum: - name: specific_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + red: + text: red + green: + text: green + orange: + text: orange + window_loc_enum: + name: window_loc_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - operation: - text: operation - as built: - text: as built - construction: - text: construction - bid: - text: bid - design: - text: design - photos: - text: photos - ceil_cond_enum: - name: ceil_cond_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + north: + text: north + south: + text: south + east: + text: east + west: + text: west + ceil_texture_enum: + name: ceil_texture_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - new: - text: new - visible wear: - text: visible wear - needs repair: - text: needs repair - damaged: - text: damaged - rupture: - text: rupture + crows feet: + text: crows feet + crows-foot stomp: + text: crows-foot stomp + double skip: + text: double skip + hawk and trowel: + text: hawk and trowel + knockdown: + text: knockdown + popcorn: + text: popcorn + orange peel: + text: orange peel + rosebud stomp: + text: rosebud stomp + Santa-Fe texture: + text: Santa-Fe texture + skip trowel: + text: skip trowel + smooth: + text: smooth + stomp knockdown: + text: stomp knockdown + swirl: + text: swirl oxy_stat_samp_enum: name: oxy_stat_samp_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: aerobic: text: aerobic @@ -1262,101 +1273,115 @@ enums: text: anaerobic other: text: other - shading_device_type_enum: - name: shading_device_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + plant_sex_enum: + name: plant_sex_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - bahama shutters: - text: bahama shutters - exterior roll blind: - text: exterior roll blind - gambrel awning: - text: gambrel awning - hood awning: - text: hood awning - porchroller awning: - text: porchroller awning - sarasota shutters: - text: sarasota shutters - slatted aluminum: - text: slatted aluminum - solid aluminum awning: - text: solid aluminum awning - sun screen: - text: sun screen - tree: - text: tree - trellis: - text: trellis - venetian awning: - text: venetian awning - vis_media_enum: - name: vis_media_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + Androdioecious: + text: Androdioecious + Androecious: + text: Androecious + Androgynous: + text: Androgynous + Androgynomonoecious: + text: Androgynomonoecious + Andromonoecious: + text: Andromonoecious + Bisexual: + text: Bisexual + Dichogamous: + text: Dichogamous + Diclinous: + text: Diclinous + Dioecious: + text: Dioecious + Gynodioecious: + text: Gynodioecious + Gynoecious: + text: Gynoecious + Gynomonoecious: + text: Gynomonoecious + Hermaphroditic: + text: Hermaphroditic + Imperfect: + text: Imperfect + Monoclinous: + text: Monoclinous + Monoecious: + text: Monoecious + Perfect: + text: Perfect + Polygamodioecious: + text: Polygamodioecious + Polygamomonoecious: + text: Polygamomonoecious + Polygamous: + text: Polygamous + Protandrous: + text: Protandrous + Protogynous: + text: Protogynous + Subandroecious: + text: Subandroecious + Subdioecious: + text: Subdioecious + Subgynoecious: + text: Subgynoecious + Synoecious: + text: Synoecious + Trimonoecious: + text: Trimonoecious + Trioecious: + text: Trioecious + Unisexual: + text: Unisexual + ext_wall_orient_enum: + name: ext_wall_orient_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - photos: - text: photos - videos: - text: videos - commonly of the building: - text: commonly of the building - site context (adjacent buildings, vegetation, terrain, streets): - text: site context (adjacent buildings, vegetation, terrain, streets) - interiors: - text: interiors - equipment: - text: equipment - 3D scans: - text: 3D scans - drawings_enum: - name: drawings_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + north: + text: north + south: + text: south + east: + text: east + west: + text: west + northeast: + text: northeast + southeast: + text: southeast + southwest: + text: southwest + northwest: + text: northwest + furniture_enum: + name: furniture_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - operation: - text: operation - as built: - text: as built - construction: - text: construction - bid: - text: bid - design: - text: design - building navigation map: - text: building navigation map - diagram: - text: diagram - sketch: - text: sketch - window_cover_enum: - name: window_cover_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - blinds: - text: blinds - curtains: - text: curtains - none: - text: none - hc_produced_enum: - name: hc_produced_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + cabinet: + text: cabinet + chair: + text: chair + desks: + text: desks + sr_lithology_enum: + name: sr_lithology_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Oil: - text: Oil - Gas-Condensate: - text: Gas-Condensate - Gas: - text: Gas - Bitumen: - text: Bitumen - Coalbed Methane: - text: Coalbed Methane + Clastic: + text: Clastic + Carbonate: + text: Carbonate + Coal: + text: Coal + Biosilicieous: + text: Biosilicieous other: text: other train_stop_loc_enum: name: train_stop_loc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: end: text: end @@ -1364,207 +1389,171 @@ enums: text: mid downtown: text: downtown - build_occup_type_enum: - name: build_occup_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - office: - text: office - market: - text: market - restaurant: - text: restaurant - residence: - text: residence - school: - text: school - residential: - text: residential - commercial: - text: commercial - low rise: - text: low rise - high rise: - text: high rise - wood framed: - text: wood framed - health care: - text: health care - airport: - text: airport - sports complex: - text: sports complex - rel_samp_loc_enum: - name: rel_samp_loc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + substructure_type_enum: + name: substructure_type_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - edge of car: - text: edge of car - center of car: - text: center of car - under a seat: - text: under a seat - occup_document_enum: - name: occup_document_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + crawlspace: + text: crawlspace + slab on grade: + text: slab on grade + basement: + text: basement + ceil_finish_mat_enum: + name: ceil_finish_mat_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - automated count: - text: automated count - estimate: - text: estimate - manual count: - text: manual count - videos: - text: videos - weekday_enum: - name: weekday_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + drywall: + text: drywall + mineral fibre: + text: mineral fibre + tiles: + text: tiles + PVC: + text: PVC + plasterboard: + text: plasterboard + metal: + text: metal + fiberglass: + text: fiberglass + stucco: + text: stucco + mineral wool/calcium silicate: + text: mineral wool/calcium silicate + wood: + text: wood + door_type_enum: + name: door_type_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Monday: - text: Monday - Tuesday: - text: Tuesday - Wednesday: - text: Wednesday - Thursday: - text: Thursday - Friday: - text: Friday - Saturday: - text: Saturday - Sunday: - text: Sunday - soil_horizon_enum: - name: soil_horizon_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + composite: + text: composite + metal: + text: metal + wooden: + text: wooden + biol_stat_enum: + name: biol_stat_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - O horizon: - text: O horizon - A horizon: - text: A horizon - E horizon: - text: E horizon - B horizon: - text: B horizon - C horizon: - text: C horizon - R layer: - text: R layer - Permafrost: - text: Permafrost - M horizon: - text: M horizon - room_loc_enum: - name: room_loc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + wild: + text: wild + natural: + text: natural + semi-natural: + text: semi-natural + inbred line: + text: inbred line + breeder's line: + text: breeder's line + hybrid: + text: hybrid + clonal selection: + text: clonal selection + mutant: + text: mutant + window_vert_pos_enum: + name: window_vert_pos_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - corner room: - text: corner room - interior room: - text: interior room - exterior wall: - text: exterior wall - indoor_surf_enum: - name: indoor_surf_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + bottom: + text: bottom + middle: + text: middle + top: + text: top + low: + text: low + high: + text: high + tillage_enum: + name: tillage_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - cabinet: - text: cabinet - ceiling: - text: ceiling - counter top: - text: counter top - door: - text: door - shelving: - text: shelving - vent cover: - text: vent cover - window: - text: window - wall: - text: wall - door_type_wood_enum: - name: door_type_wood_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + drill: + text: drill + cutting disc: + text: cutting disc + ridge till: + text: ridge till + strip tillage: + text: strip tillage + zonal tillage: + text: zonal tillage + chisel: + text: chisel + tined: + text: tined + mouldboard: + text: mouldboard + disc plough: + text: disc plough + build_docs_enum: + name: build_docs_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - bettened and ledged: - text: bettened and ledged - battened: - text: battened - ledged and braced: - text: ledged and braced - ledged and framed: - text: ledged and framed - ledged, braced and frame: - text: ledged, braced and frame - framed and paneled: - text: framed and paneled - glashed or sash: - text: glashed or sash - flush: - text: flush - louvered: - text: louvered - wire gauged: - text: wire gauged - floor_struc_enum: - name: floor_struc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - balcony: - text: balcony - floating floor: - text: floating floor - glass floor: - text: glass floor - raised floor: - text: raised floor - sprung floor: - text: sprung floor - wood-framed: - text: wood-framed - concrete: - text: concrete - door_type_metal_enum: - name: door_type_metal_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + building information model: + text: building information model + commissioning report: + text: commissioning report + complaint logs: + text: complaint logs + contract administration: + text: contract administration + cost estimate: + text: cost estimate + janitorial schedules or logs: + text: janitorial schedules or logs + maintenance plans: + text: maintenance plans + schedule: + text: schedule + sections: + text: sections + shop drawings: + text: shop drawings + submittals: + text: submittals + ventilation system: + text: ventilation system + windows: + text: windows + window_type_enum: + name: window_type_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - collapsible: - text: collapsible - corrugated steel: - text: corrugated steel - hollow: - text: hollow - rolling shutters: - text: rolling shutters - steel plate: - text: steel plate - samp_weather_enum: - name: samp_weather_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + single-hung sash window: + text: single-hung sash window + horizontal sash window: + text: horizontal sash window + fixed window: + text: fixed window + mech_struc_enum: + name: mech_struc_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - clear sky: - text: clear sky - cloudy: - text: cloudy - foggy: - text: foggy - hail: - text: hail - rain: - text: rain - snow: - text: snow - sleet: - text: sleet - sunny: - text: sunny - windy: - text: windy - ext_window_orient_enum: - name: ext_window_orient_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + subway: + text: subway + coach: + text: coach + carriage: + text: carriage + elevator: + text: elevator + escalator: + text: escalator + boat: + text: boat + train: + text: train + car: + text: car + bus: + text: bus + door_loc_enum: + name: door_loc_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: north: text: north @@ -1574,17 +1563,53 @@ enums: text: east west: text: west - northeast: - text: northeast - southeast: - text: southeast - southwest: - text: southwest - northwest: - text: northwest + shading_device_cond_enum: + name: shading_device_cond_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + damaged: + text: damaged + needs repair: + text: needs repair + new: + text: new + rupture: + text: rupture + visible wear: + text: visible wear + samp_floor_enum: + name: samp_floor_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + 1st floor: + text: 1st floor + 2nd floor: + text: 2nd floor + basement: + text: basement + lobby: + text: lobby + samp_collect_point_enum: + name: samp_collect_point_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + well: + text: well + test well: + text: test well + drilling rig: + text: drilling rig + wellhead: + text: wellhead + separator: + text: separator + storage tank: + text: storage tank + other: + text: other sediment_type_enum: name: sediment_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: biogenous: text: biogenous @@ -1594,9 +1619,83 @@ enums: text: hydrogenous lithogenous: text: lithogenous - room_condt_enum: - name: room_condt_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + indoor_space_enum: + name: indoor_space_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + bedroom: + text: bedroom + office: + text: office + bathroom: + text: bathroom + foyer: + text: foyer + kitchen: + text: kitchen + locker room: + text: locker room + hallway: + text: hallway + elevator: + text: elevator + handidness_enum: + name: handidness_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + ambidexterity: + text: ambidexterity + left handedness: + text: left handedness + mixed-handedness: + text: mixed-handedness + right handedness: + text: right handedness + door_type_wood_enum: + name: door_type_wood_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + bettened and ledged: + text: bettened and ledged + battened: + text: battened + ledged and braced: + text: ledged and braced + ledged and framed: + text: ledged and framed + ledged, braced and frame: + text: ledged, braced and frame + framed and paneled: + text: framed and paneled + glashed or sash: + text: glashed or sash + flush: + text: flush + louvered: + text: louvered + wire gauged: + text: wire gauged + floor_struc_enum: + name: floor_struc_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + balcony: + text: balcony + floating floor: + text: floating floor + glass floor: + text: glass floor + raised floor: + text: raised floor + sprung floor: + text: sprung floor + wood-framed: + text: wood-framed + concrete: + text: concrete + floor_cond_enum: + name: floor_cond_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: new: text: new @@ -1608,111 +1707,113 @@ enums: text: damaged rupture: text: rupture - visible signs of mold/mildew: - text: visible signs of mold/mildew - sr_dep_env_enum: - name: sr_dep_env_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - Lacustine: - text: Lacustine - Fluvioldeltaic: - text: Fluvioldeltaic - Fluviomarine: - text: Fluviomarine - Marine: - text: Marine - other: - text: other - wall_surf_treatment_enum: - name: wall_surf_treatment_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + drawings_enum: + name: drawings_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - painted: - text: painted - wall paper: - text: wall paper - no treatment: - text: no treatment - paneling: - text: paneling - stucco: - text: stucco - fabric: - text: fabric - water_feat_type_enum: - name: water_feat_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + operation: + text: operation + as built: + text: as built + construction: + text: construction + bid: + text: bid + design: + text: design + building navigation map: + text: building navigation map + diagram: + text: diagram + sketch: + text: sketch + room_condt_enum: + name: room_condt_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - fountain: - text: fountain - pool: - text: pool - standing feature: - text: standing feature - stream: - text: stream - waterfall: - text: waterfall - window_mat_enum: - name: window_mat_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + new: + text: new + visible wear: + text: visible wear + needs repair: + text: needs repair + damaged: + text: damaged + rupture: + text: rupture + visible signs of mold/mildew: + text: visible signs of mold/mildew + hc_produced_enum: + name: hc_produced_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - clad: - text: clad - fiberglass: - text: fiberglass + Oil: + text: Oil + Gas-Condensate: + text: Gas-Condensate + Gas: + text: Gas + Bitumen: + text: Bitumen + Coalbed Methane: + text: Coalbed Methane + other: + text: other + surf_material_enum: + name: surf_material_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + adobe: + text: adobe + carpet: + text: carpet + cinder blocks: + text: cinder blocks + concrete: + text: concrete + hay bales: + text: hay bales + glass: + text: glass metal: text: metal + paint: + text: paint + plastic: + text: plastic + stainless steel: + text: stainless steel + stone: + text: stone + stucco: + text: stucco + tile: + text: tile vinyl: text: vinyl wood: text: wood - furniture_enum: - name: furniture_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - cabinet: - text: cabinet - chair: - text: chair - desks: - text: desks - building_setting_enum: - name: building_setting_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - urban: - text: urban - suburban: - text: suburban - exurban: - text: exurban - rural: - text: rural - door_direct_enum: - name: door_direct_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - inward: - text: inward - outward: - text: outward - sideways: - text: sideways - window_horiz_pos_enum: - name: window_horiz_pos_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + vis_media_enum: + name: vis_media_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - left: - text: left - middle: - text: middle - right: - text: right + photos: + text: photos + videos: + text: videos + commonly of the building: + text: commonly of the building + site context (adjacent buildings, vegetation, terrain, streets): + text: site context (adjacent buildings, vegetation, terrain, streets) + interiors: + text: interiors + equipment: + text: equipment + 3D scans: + text: 3D scans samp_dis_stage_enum: name: samp_dis_stage_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: dissemination: text: dissemination @@ -1726,496 +1827,157 @@ enums: text: penetration other: text: other - door_cond_enum: - name: door_cond_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + profile_position_enum: + name: profile_position_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - damaged: - text: damaged - needs repair: - text: needs repair - new: - text: new - rupture: - text: rupture - visible wear: - text: visible wear - filter_type_enum: - name: filter_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + summit: + text: summit + shoulder: + text: shoulder + backslope: + text: backslope + footslope: + text: footslope + toeslope: + text: toeslope + building_setting_enum: + name: building_setting_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - particulate air filter: - text: particulate air filter - chemical air filter: - text: chemical air filter - low-MERV pleated media: - text: low-MERV pleated media - HEPA: - text: HEPA - electrostatic: - text: electrostatic - gas-phase or ultraviolet air treatments: - text: gas-phase or ultraviolet air treatments - window_type_enum: - name: window_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + urban: + text: urban + suburban: + text: suburban + exurban: + text: exurban + rural: + text: rural + sr_geol_age_enum: + name: sr_geol_age_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - single-hung sash window: - text: single-hung sash window - horizontal sash window: - text: horizontal sash window - fixed window: - text: fixed window - build_docs_enum: - name: build_docs_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + Archean: + text: Archean + Cambrian: + text: Cambrian + Carboniferous: + text: Carboniferous + Cenozoic: + text: Cenozoic + Cretaceous: + text: Cretaceous + Devonian: + text: Devonian + Jurassic: + text: Jurassic + Mesozoic: + text: Mesozoic + Neogene: + text: Neogene + Ordovician: + text: Ordovician + Paleogene: + text: Paleogene + Paleozoic: + text: Paleozoic + Permian: + text: Permian + Precambrian: + text: Precambrian + Proterozoic: + text: Proterozoic + Silurian: + text: Silurian + Triassic: + text: Triassic + other: + text: other + samp_capt_status_enum: + name: samp_capt_status_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - building information model: - text: building information model - commissioning report: - text: commissioning report - complaint logs: - text: complaint logs - contract administration: - text: contract administration - cost estimate: - text: cost estimate - janitorial schedules or logs: - text: janitorial schedules or logs - maintenance plans: - text: maintenance plans - schedule: - text: schedule - sections: - text: sections - shop drawings: - text: shop drawings - submittals: - text: submittals - ventilation system: - text: ventilation system - windows: - text: windows - cur_land_use_enum: - name: cur_land_use_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - badlands: - text: badlands - cities: - text: cities - conifers: - text: conifers - annotations: - originally: - tag: originally - value: conifers (e.g. pine,spruce,fir,cypress) - examples: - - value: cypress - - value: fir - - value: pine - - value: spruce - crop trees: - text: crop trees - annotations: - originally: - tag: originally - value: crop trees (nuts,fruit,christmas trees,nursery trees) - examples: - - value: christmas trees - - value: fruit - - value: nursery trees - - value: nuts - farmstead: - text: farmstead - gravel: - text: gravel - hardwoods: - text: hardwoods - annotations: - originally: - tag: originally - value: hardwoods (e.g. oak,hickory,elm,aspen) - examples: - - value: aspen - - value: elm - - value: hickory - - value: oak - hayland: - text: hayland - horticultural plants: - text: horticultural plants - annotations: - originally: - tag: originally - value: horticultural plants (e.g. tulips) - examples: - - value: tulips - industrial areas: - text: industrial areas - intermixed hardwood and conifers: - text: intermixed hardwood and conifers - marshlands: - text: marshlands - annotations: - originally: - tag: originally - value: marshlands (grass,sedges,rushes) - examples: - - value: grass - - value: rushes - - value: sedgees - meadows: - text: meadows - annotations: - originally: - tag: originally - value: meadows (grasses,alfalfa,fescue,bromegrass,timothy) - examples: - - value: alfalfa - - value: bromegrass - - value: fescue - - value: grasses - - value: timothy - mines/quarries: - text: mines/quarries - mudflats: - text: mudflats - oil waste areas: - text: oil waste areas - pastureland: - text: pastureland - annotations: - originally: - tag: originally - value: pastureland (grasslands used for livestock grazing) - comments: - - grasslands used for livestock grazing - permanent snow or ice: - text: permanent snow or ice - rainforest: - text: rainforest - annotations: - originally: - tag: originally - value: rainforest (evergreen forest receiving greater than 406 cm annual - rainfall) - comments: - - evergreen forest receiving greater than 406 cm annual rainfall - rangeland: - text: rangeland - roads/railroads: - text: roads/railroads - rock: - text: rock - row crops: - text: row crops - saline seeps: - text: saline seeps - salt flats: - text: salt flats - sand: - text: sand - shrub crops: - text: shrub crops - annotations: - originally: - tag: originally - value: shrub crops (blueberries,nursery ornamentals,filberts) - examples: - - value: blueberries - - value: filberts - - value: nursery ornamentals - shrub land: - text: shrub land - annotations: - originally: - tag: originally - value: shrub land (e.g. mesquite,sage-brush,creosote bush,shrub oak,eucalyptus) - examples: - - value: creosote bush - - value: eucalyptus - - value: mesquite - - value: sage-brush - - value: shrub oak - small grains: - text: small grains - successional shrub land: - text: successional shrub land - annotations: - originally: - tag: originally - value: successional shrub land (tree saplings,hazels,sumacs,chokecherry,shrub - dogwoods,blackberries) - examples: - - value: blackberries - - value: chokecherry - - value: hazels - - value: shrub dogwoods - - value: sumacs - - value: tree saplings - swamp: - text: swamp - annotations: - originally: - tag: originally - value: swamp (permanent or semi-permanent water body dominated by woody - plants) - comments: - - permanent or semi-permanent water body dominated by woody plants - tropical: - text: tropical - annotations: - originally: - tag: originally - value: tropical (e.g. mangrove,palms) - examples: - - value: mangrove - - value: palms - tundra: - text: tundra - annotations: - originally: - tag: originally - value: tundra (mosses,lichens) - examples: - - value: lichens - - value: mosses - vegetable crops: - text: vegetable crops - vine crops: - text: vine crops - annotations: - originally: - tag: originally - value: vine crops (grapes) - examples: - - value: grapes - host_sex_enum: - name: host_sex_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - female: - text: female - hermaphrodite: - text: hermaphrodite - male: - text: male - neuter: - text: neuter - samp_collect_point_enum: - name: samp_collect_point_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - well: - text: well - test well: - text: test well - drilling rig: - text: drilling rig - wellhead: - text: wellhead - separator: - text: separator - storage tank: - text: storage tank - other: - text: other - train_line_enum: - name: train_line_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - red: - text: red - green: - text: green - orange: - text: orange - mech_struc_enum: - name: mech_struc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - subway: - text: subway - coach: - text: coach - carriage: - text: carriage - elevator: - text: elevator - escalator: - text: escalator - boat: - text: boat - train: - text: train - car: - text: car - bus: - text: bus - lithology_enum: - name: lithology_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - Basement: - text: Basement - Chalk: - text: Chalk - Chert: - text: Chert - Coal: - text: Coal - Conglomerate: - text: Conglomerate - Diatomite: - text: Diatomite - Dolomite: - text: Dolomite - Limestone: - text: Limestone - Sandstone: - text: Sandstone - Shale: - text: Shale - Siltstone: - text: Siltstone - Volcanic: - text: Volcanic + active surveillance in response to an outbreak: + text: active surveillance in response to an outbreak + active surveillance not initiated by an outbreak: + text: active surveillance not initiated by an outbreak + farm sample: + text: farm sample + market sample: + text: market sample other: text: other - door_mat_enum: - name: door_mat_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - aluminum: - text: aluminum - cellular PVC: - text: cellular PVC - engineered plastic: - text: engineered plastic - fiberboard: - text: fiberboard - fiberglass: - text: fiberglass - metal: - text: metal - thermoplastic alloy: - text: thermoplastic alloy - vinyl: - text: vinyl - wood: - text: wood - wood/plastic composite: - text: wood/plastic composite - floor_water_mold_enum: - name: floor_water_mold_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - mold odor: - text: mold odor - wet floor: - text: wet floor - water stains: - text: water stains - wall discoloration: - text: wall discoloration - floor discoloration: - text: floor discoloration - ceiling discoloration: - text: ceiling discoloration - peeling paint or wallpaper: - text: peeling paint or wallpaper - bulging walls: - text: bulging walls - condensation: - text: condensation - surf_air_cont_enum: - name: surf_air_cont_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + soil_horizon_enum: + name: soil_horizon_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - dust: - text: dust - organic matter: - text: organic matter - particulate matter: - text: particulate matter - volatile organic compounds: - text: volatile organic compounds - biological contaminants: - text: biological contaminants - radon: - text: radon - nutrients: - text: nutrients - biocides: - text: biocides - ceil_finish_mat_enum: - name: ceil_finish_mat_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + O horizon: + text: O horizon + A horizon: + text: A horizon + E horizon: + text: E horizon + B horizon: + text: B horizon + C horizon: + text: C horizon + R layer: + text: R layer + Permafrost: + text: Permafrost + M horizon: + text: M horizon + ext_window_orient_enum: + name: ext_window_orient_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - drywall: - text: drywall - mineral fibre: - text: mineral fibre - tiles: - text: tiles - PVC: - text: PVC - plasterboard: - text: plasterboard - metal: - text: metal - fiberglass: - text: fiberglass - stucco: - text: stucco - mineral wool/calcium silicate: - text: mineral wool/calcium silicate - wood: - text: wood - samp_md_enum: - name: samp_md_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + north: + text: north + south: + text: south + east: + text: east + west: + text: west + northeast: + text: northeast + southeast: + text: southeast + southwest: + text: southwest + northwest: + text: northwest + heat_deliv_loc_enum: + name: heat_deliv_loc_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - DF: - text: DF - RT: - text: RT - KB: - text: KB - MSL: - text: MSL - other: - text: other - wall_finish_mat_enum: - name: wall_finish_mat_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + north: + text: north + south: + text: south + east: + text: east + west: + text: west + door_move_enum: + name: door_move_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - plaster: - text: plaster - gypsum plaster: - text: gypsum plaster - veneer plaster: - text: veneer plaster - gypsum board: - text: gypsum board - tile: - text: tile - terrazzo: - text: terrazzo - stone facing: - text: stone facing - acoustical treatment: - text: acoustical treatment - wood: - text: wood - metal: - text: metal - masonry: - text: masonry + collapsible: + text: collapsible + folding: + text: folding + revolving: + text: revolving + rolling shutter: + text: rolling shutter + sliding: + text: sliding + swinging: + text: swinging floor_finish_mat_enum: name: floor_finish_mat_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: tile: text: tile @@ -2253,87 +2015,179 @@ enums: text: paint none or unfinished: text: none or unfinished - sr_kerog_type_enum: - name: sr_kerog_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + tidal_stage_enum: + name: tidal_stage_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Type I: - text: Type I - Type II: - text: Type II - Type III: - text: Type III - Type IV: - text: Type IV + low tide: + text: low tide + ebb tide: + text: ebb tide + flood tide: + text: flood tide + high tide: + text: high tide + train_stat_loc_enum: + name: train_stat_loc_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + south station above ground: + text: south station above ground + south station underground: + text: south station underground + south station amtrak: + text: south station amtrak + forest hills: + text: forest hills + riverside: + text: riverside + lithology_enum: + name: lithology_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + Basement: + text: Basement + Chalk: + text: Chalk + Chert: + text: Chert + Coal: + text: Coal + Conglomerate: + text: Conglomerate + Diatomite: + text: Diatomite + Dolomite: + text: Dolomite + Limestone: + text: Limestone + Sandstone: + text: Sandstone + Shale: + text: Shale + Siltstone: + text: Siltstone + Volcanic: + text: Volcanic other: text: other - biotic_relationship_enum: - name: biotic_relationship_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + hcr_geol_age_enum: + name: hcr_geol_age_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - free living: - text: free living - parasite: - text: parasite - commensal: - text: commensal - symbiont: - text: symbiont - room_connected_enum: - name: room_connected_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + Archean: + text: Archean + Cambrian: + text: Cambrian + Carboniferous: + text: Carboniferous + Cenozoic: + text: Cenozoic + Cretaceous: + text: Cretaceous + Devonian: + text: Devonian + Jurassic: + text: Jurassic + Mesozoic: + text: Mesozoic + Neogene: + text: Neogene + Ordovician: + text: Ordovician + Paleogene: + text: Paleogene + Paleozoic: + text: Paleozoic + Permian: + text: Permian + Precambrian: + text: Precambrian + Proterozoic: + text: Proterozoic + Silurian: + text: Silurian + Triassic: + text: Triassic + other: + text: other + hcr_enum: + name: hcr_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + Oil Reservoir: + text: Oil Reservoir + Gas Reservoir: + text: Gas Reservoir + Oil Sand: + text: Oil Sand + Coalbed: + text: Coalbed + Shale: + text: Shale + Tight Oil Reservoir: + text: Tight Oil Reservoir + Tight Gas Reservoir: + text: Tight Gas Reservoir + other: + text: other + build_occup_type_enum: + name: build_occup_type_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - attic: - text: attic - bathroom: - text: bathroom - closet: - text: closet - conference room: - text: conference room - elevator: - text: elevator - examining room: - text: examining room - hallway: - text: hallway - kitchen: - text: kitchen - mail room: - text: mail room office: text: office - stairwell: - text: stairwell - growth_habit_enum: - name: growth_habit_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + market: + text: market + restaurant: + text: restaurant + residence: + text: residence + school: + text: school + residential: + text: residential + commercial: + text: commercial + low rise: + text: low rise + high rise: + text: high rise + wood framed: + text: wood framed + health care: + text: health care + airport: + text: airport + sports complex: + text: sports complex + window_cover_enum: + name: window_cover_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - erect: - text: erect - semi-erect: - text: semi-erect - spreading: - text: spreading - prostrate: - text: prostrate - samp_subtype_enum: - name: samp_subtype_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + blinds: + text: blinds + curtains: + text: curtains + none: + text: none + ceil_cond_enum: + name: ceil_cond_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - oil phase: - text: oil phase - water phase: - text: water phase - biofilm: - text: biofilm - not applicable: - text: not applicable - other: - text: other + new: + text: new + visible wear: + text: visible wear + needs repair: + text: needs repair + damaged: + text: damaged + rupture: + text: rupture plant_growth_med_enum: name: plant_growth_med_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: other artificial liquid medium: text: other artificial liquid medium @@ -2353,445 +2207,231 @@ enums: text: vermiculite water: text: water - ext_wall_orient_enum: - name: ext_wall_orient_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - northeast: - text: northeast - southeast: - text: southeast - southwest: - text: southwest - northwest: - text: northwest - door_move_enum: - name: door_move_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - collapsible: - text: collapsible - folding: - text: folding - revolving: - text: revolving - rolling shutter: - text: rolling shutter - sliding: - text: sliding - swinging: - text: swinging - ceil_type_enum: - name: ceil_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - cathedral: - text: cathedral - dropped: - text: dropped - concave: - text: concave - barrel-shaped: - text: barrel-shaped - coffered: - text: coffered - cove: - text: cove - stretched: - text: stretched - heat_cool_type_enum: - name: heat_cool_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - radiant system: - text: radiant system - heat pump: - text: heat pump - forced air system: - text: forced air system - steam forced heat: - text: steam forced heat - wood stove: - text: wood stove - window_vert_pos_enum: - name: window_vert_pos_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - bottom: - text: bottom - middle: - text: middle - top: - text: top - low: - text: low - high: - text: high - indoor_space_enum: - name: indoor_space_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - bedroom: - text: bedroom - office: - text: office - bathroom: - text: bathroom - foyer: - text: foyer - kitchen: - text: kitchen - locker room: - text: locker room - hallway: - text: hallway - elevator: - text: elevator - tidal_stage_enum: - name: tidal_stage_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - low tide: - text: low tide - ebb tide: - text: ebb tide - flood tide: - text: flood tide - high tide: - text: high tide - wall_texture_enum: - name: wall_texture_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - crows feet: - text: crows feet - crows-foot stomp: - text: crows-foot stomp - ? '' - : text: '' - double skip: - text: double skip - hawk and trowel: - text: hawk and trowel - knockdown: - text: knockdown - popcorn: - text: popcorn - orange peel: - text: orange peel - rosebud stomp: - text: rosebud stomp - Santa-Fe texture: - text: Santa-Fe texture - skip trowel: - text: skip trowel - smooth: - text: smooth - stomp knockdown: - text: stomp knockdown - swirl: - text: swirl - door_type_enum: - name: door_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - composite: - text: composite - metal: - text: metal - wooden: - text: wooden - int_wall_cond_enum: - name: int_wall_cond_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + samp_md_enum: + name: samp_md_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - new: - text: new - visible wear: - text: visible wear - needs repair: - text: needs repair - damaged: - text: damaged - rupture: - text: rupture - profile_position_enum: - name: profile_position_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + DF: + text: DF + RT: + text: RT + KB: + text: KB + MSL: + text: MSL + other: + text: other + door_direct_enum: + name: door_direct_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - summit: - text: summit - shoulder: - text: shoulder - backslope: - text: backslope - footslope: - text: footslope - toeslope: - text: toeslope - arch_struc_enum: - name: arch_struc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + inward: + text: inward + outward: + text: outward + sideways: + text: sideways + sr_dep_env_enum: + name: sr_dep_env_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - building: - text: building - shed: - text: shed - home: - text: home - surf_material_enum: - name: surf_material_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + Lacustine: + text: Lacustine + Fluvioldeltaic: + text: Fluvioldeltaic + Fluviomarine: + text: Fluviomarine + Marine: + text: Marine + other: + text: other + window_mat_enum: + name: window_mat_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - adobe: - text: adobe - carpet: - text: carpet - cinder blocks: - text: cinder blocks - concrete: - text: concrete - hay bales: - text: hay bales - glass: - text: glass + clad: + text: clad + fiberglass: + text: fiberglass metal: text: metal - paint: - text: paint - plastic: - text: plastic - stainless steel: - text: stainless steel - stone: - text: stone - stucco: - text: stucco - tile: - text: tile vinyl: text: vinyl wood: text: wood - season_use_enum: - name: season_use_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - Spring: - text: Spring - Summer: - text: Summer - Fall: - text: Fall - Winter: - text: Winter - drainage_class_enum: - name: drainage_class_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - very poorly: - text: very poorly - poorly: - text: poorly - somewhat poorly: - text: somewhat poorly - moderately well: - text: moderately well - well: - text: well - excessively drained: - text: excessively drained - wall_loc_enum: - name: wall_loc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - biol_stat_enum: - name: biol_stat_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - wild: - text: wild - natural: - text: natural - semi-natural: - text: semi-natural - inbred line: - text: inbred line - breeder's line: - text: breeder's line - hybrid: - text: hybrid - clonal selection: - text: clonal selection - mutant: - text: mutant - sr_lithology_enum: - name: sr_lithology_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + sr_kerog_type_enum: + name: sr_kerog_type_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Clastic: - text: Clastic - Carbonate: - text: Carbonate - Coal: - text: Coal - Biosilicieous: - text: Biosilicieous + Type I: + text: Type I + Type II: + text: Type II + Type III: + text: Type III + Type IV: + text: Type IV other: text: other - hcr_geol_age_enum: - name: hcr_geol_age_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + window_horiz_pos_enum: + name: window_horiz_pos_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Archean: - text: Archean - Cambrian: - text: Cambrian - Carboniferous: - text: Carboniferous - Cenozoic: - text: Cenozoic - Cretaceous: - text: Cretaceous - Devonian: - text: Devonian - Jurassic: - text: Jurassic - Mesozoic: - text: Mesozoic - Neogene: - text: Neogene - Ordovician: - text: Ordovician - Paleogene: - text: Paleogene - Paleozoic: - text: Paleozoic - Permian: - text: Permian - Precambrian: - text: Precambrian - Proterozoic: - text: Proterozoic - Silurian: - text: Silurian - Triassic: - text: Triassic + left: + text: left + middle: + text: middle + right: + text: right + wall_finish_mat_enum: + name: wall_finish_mat_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + plaster: + text: plaster + gypsum plaster: + text: gypsum plaster + veneer plaster: + text: veneer plaster + gypsum board: + text: gypsum board + tile: + text: tile + terrazzo: + text: terrazzo + stone facing: + text: stone facing + acoustical treatment: + text: acoustical treatment + wood: + text: wood + metal: + text: metal + masonry: + text: masonry + depos_env_enum: + name: depos_env_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + Continental - Alluvial: + text: Continental - Alluvial + Continental - Aeolian: + text: Continental - Aeolian + Continental - Fluvial: + text: Continental - Fluvial + Continental - Lacustrine: + text: Continental - Lacustrine + Transitional - Deltaic: + text: Transitional - Deltaic + Transitional - Tidal: + text: Transitional - Tidal + Transitional - Lagoonal: + text: Transitional - Lagoonal + Transitional - Beach: + text: Transitional - Beach + Transitional - Lake: + text: Transitional - Lake + Marine - Shallow: + text: Marine - Shallow + Marine - Deep: + text: Marine - Deep + Marine - Reef: + text: Marine - Reef + Other - Evaporite: + text: Other - Evaporite + Other - Glacial: + text: Other - Glacial + Other - Volcanic: + text: Other - Volcanic other: text: other - fao_class_enum: - name: fao_class_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + indoor_surf_enum: + name: indoor_surf_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Acrisols: - text: Acrisols - Andosols: - text: Andosols - Arenosols: - text: Arenosols - Cambisols: - text: Cambisols - Chernozems: - text: Chernozems - Ferralsols: - text: Ferralsols - Fluvisols: - text: Fluvisols - Gleysols: - text: Gleysols - Greyzems: - text: Greyzems - Gypsisols: - text: Gypsisols - Histosols: - text: Histosols - Kastanozems: - text: Kastanozems - Lithosols: - text: Lithosols - Luvisols: - text: Luvisols - Nitosols: - text: Nitosols - Phaeozems: - text: Phaeozems - Planosols: - text: Planosols - Podzols: - text: Podzols - Podzoluvisols: - text: Podzoluvisols - Rankers: - text: Rankers - Regosols: - text: Regosols - Rendzinas: - text: Rendzinas - Solonchaks: - text: Solonchaks - Solonetz: - text: Solonetz - Vertisols: - text: Vertisols - Yermosols: - text: Yermosols - wall_const_type_enum: - name: wall_const_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + cabinet: + text: cabinet + ceiling: + text: ceiling + counter top: + text: counter top + door: + text: door + shelving: + text: shelving + vent cover: + text: vent cover + window: + text: window + wall: + text: wall + floor_water_mold_enum: + name: floor_water_mold_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - frame construction: - text: frame construction - joisted masonry: - text: joisted masonry - light noncombustible: - text: light noncombustible - masonry noncombustible: - text: masonry noncombustible - modified fire resistive: - text: modified fire resistive - fire resistive: - text: fire resistive - room_samp_pos_enum: - name: room_samp_pos_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + mold odor: + text: mold odor + wet floor: + text: wet floor + water stains: + text: water stains + wall discoloration: + text: wall discoloration + floor discoloration: + text: floor discoloration + ceiling discoloration: + text: ceiling discoloration + peeling paint or wallpaper: + text: peeling paint or wallpaper + bulging walls: + text: bulging walls + condensation: + text: condensation + freq_clean_enum: + name: freq_clean_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - north corner: - text: north corner - south corner: - text: south corner - west corner: - text: west corner - east corner: - text: east corner - northeast corner: - text: northeast corner - northwest corner: - text: northwest corner - southeast corner: - text: southeast corner - southwest corner: - text: southwest corner - center: - text: center + Daily: + text: Daily + Weekly: + text: Weekly + Monthly: + text: Monthly + Quarterly: + text: Quarterly + Annually: + text: Annually + other: + text: other + heat_cool_type_enum: + name: heat_cool_type_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + radiant system: + text: radiant system + heat pump: + text: heat pump + forced air system: + text: forced air system + steam forced heat: + text: steam forced heat + wood stove: + text: wood stove + door_comp_type_enum: + name: door_comp_type_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + metal covered: + text: metal covered + revolving: + text: revolving + sliding: + text: sliding + telescopic: + text: telescopic window_cond_enum: name: window_cond_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: damaged: text: damaged @@ -2803,127 +2443,183 @@ enums: text: rupture visible wear: text: visible wear - sr_geol_age_enum: - name: sr_geol_age_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + ceil_type_enum: + name: ceil_type_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Archean: - text: Archean - Cambrian: - text: Cambrian - Carboniferous: - text: Carboniferous - Cenozoic: - text: Cenozoic - Cretaceous: - text: Cretaceous - Devonian: - text: Devonian - Jurassic: - text: Jurassic - Mesozoic: - text: Mesozoic - Neogene: - text: Neogene - Ordovician: - text: Ordovician - Paleogene: - text: Paleogene - Paleozoic: - text: Paleozoic - Permian: - text: Permian - Precambrian: - text: Precambrian - Proterozoic: - text: Proterozoic - Silurian: - text: Silurian - Triassic: - text: Triassic + cathedral: + text: cathedral + dropped: + text: dropped + concave: + text: concave + barrel-shaped: + text: barrel-shaped + coffered: + text: coffered + cove: + text: cove + stretched: + text: stretched + biotic_relationship_enum: + name: biotic_relationship_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + free living: + text: free living + parasite: + text: parasite + commensal: + text: commensal + symbiont: + text: symbiont + samp_subtype_enum: + name: samp_subtype_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + oil phase: + text: oil phase + water phase: + text: water phase + biofilm: + text: biofilm + not applicable: + text: not applicable other: text: other - tillage_enum: - name: tillage_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + shading_device_type_enum: + name: shading_device_type_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - drill: - text: drill - cutting disc: - text: cutting disc - ridge till: - text: ridge till - strip tillage: - text: strip tillage - zonal tillage: - text: zonal tillage - chisel: - text: chisel - tined: - text: tined - mouldboard: - text: mouldboard - disc plough: - text: disc plough - heat_deliv_loc_enum: - name: heat_deliv_loc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + bahama shutters: + text: bahama shutters + exterior roll blind: + text: exterior roll blind + gambrel awning: + text: gambrel awning + hood awning: + text: hood awning + porchroller awning: + text: porchroller awning + sarasota shutters: + text: sarasota shutters + slatted aluminum: + text: slatted aluminum + solid aluminum awning: + text: solid aluminum awning + sun screen: + text: sun screen + tree: + text: tree + trellis: + text: trellis + venetian awning: + text: venetian awning + specific_enum: + name: specific_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - handidness_enum: - name: handidness_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + operation: + text: operation + as built: + text: as built + construction: + text: construction + bid: + text: bid + design: + text: design + photos: + text: photos + season_use_enum: + name: season_use_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + Spring: + text: Spring + Summer: + text: Summer + Fall: + text: Fall + Winter: + text: Winter + door_cond_enum: + name: door_cond_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - ambidexterity: - text: ambidexterity - left handedness: - text: left handedness - mixed-handedness: - text: mixed-handedness - right handedness: - text: right handedness - hcr_enum: - name: hcr_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + damaged: + text: damaged + needs repair: + text: needs repair + new: + text: new + rupture: + text: rupture + visible wear: + text: visible wear + quad_pos_enum: + name: quad_pos_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Oil Reservoir: - text: Oil Reservoir - Gas Reservoir: - text: Gas Reservoir - Oil Sand: - text: Oil Sand - Coalbed: - text: Coalbed - Shale: - text: Shale - Tight Oil Reservoir: - text: Tight Oil Reservoir - Tight Gas Reservoir: - text: Tight Gas Reservoir - other: - text: other - window_loc_enum: - name: window_loc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + North side: + text: North side + West side: + text: West side + South side: + text: South side + East side: + text: East side + samp_weather_enum: + name: samp_weather_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west + clear sky: + text: clear sky + cloudy: + text: cloudy + foggy: + text: foggy + hail: + text: hail + rain: + text: rain + snow: + text: snow + sleet: + text: sleet + sunny: + text: sunny + windy: + text: windy + room_connected_enum: + name: room_connected_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + attic: + text: attic + bathroom: + text: bathroom + closet: + text: closet + conference room: + text: conference room + elevator: + text: elevator + examining room: + text: examining room + hallway: + text: hallway + kitchen: + text: kitchen + mail room: + text: mail room + office: + text: office + stairwell: + text: stairwell gender_restroom_enum: name: gender_restroom_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: all gender: text: all gender @@ -2937,276 +2633,577 @@ enums: text: male and female unisex: text: unisex - ceil_texture_enum: - name: ceil_texture_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + host_sex_enum: + name: host_sex_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - crows feet: - text: crows feet - crows-foot stomp: - text: crows-foot stomp - double skip: - text: double skip - hawk and trowel: - text: hawk and trowel - knockdown: - text: knockdown - popcorn: - text: popcorn - orange peel: - text: orange peel - rosebud stomp: - text: rosebud stomp - Santa-Fe texture: - text: Santa-Fe texture - skip trowel: - text: skip trowel - smooth: - text: smooth - stomp knockdown: - text: stomp knockdown - swirl: - text: swirl - train_stat_loc_enum: - name: train_stat_loc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + female: + text: female + hermaphrodite: + text: hermaphrodite + male: + text: male + neuter: + text: neuter + weekday_enum: + name: weekday_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - south station above ground: - text: south station above ground - south station underground: - text: south station underground - south station amtrak: - text: south station amtrak - forest hills: - text: forest hills - riverside: - text: riverside - plant_sex_enum: - name: plant_sex_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + Monday: + text: Monday + Tuesday: + text: Tuesday + Wednesday: + text: Wednesday + Thursday: + text: Thursday + Friday: + text: Friday + Saturday: + text: Saturday + Sunday: + text: Sunday + surf_air_cont_enum: + name: surf_air_cont_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Androdioecious: - text: Androdioecious - Androecious: - text: Androecious - Androgynous: - text: Androgynous - Androgynomonoecious: - text: Androgynomonoecious - Andromonoecious: - text: Andromonoecious - Bisexual: - text: Bisexual - Dichogamous: - text: Dichogamous - Diclinous: - text: Diclinous - Dioecious: - text: Dioecious - Gynodioecious: - text: Gynodioecious - Gynoecious: - text: Gynoecious - Gynomonoecious: - text: Gynomonoecious - Hermaphroditic: - text: Hermaphroditic - Imperfect: - text: Imperfect - Monoclinous: - text: Monoclinous - Monoecious: - text: Monoecious - Perfect: - text: Perfect - Polygamodioecious: - text: Polygamodioecious - Polygamomonoecious: - text: Polygamomonoecious - Polygamous: - text: Polygamous - Protandrous: - text: Protandrous - Protogynous: - text: Protogynous - Subandroecious: - text: Subandroecious - Subdioecious: - text: Subdioecious - Subgynoecious: - text: Subgynoecious - Synoecious: - text: Synoecious - Trimonoecious: - text: Trimonoecious - Trioecious: - text: Trioecious - Unisexual: - text: Unisexual - door_loc_enum: - name: door_loc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + dust: + text: dust + organic matter: + text: organic matter + particulate matter: + text: particulate matter + volatile organic compounds: + text: volatile organic compounds + biological contaminants: + text: biological contaminants + radon: + text: radon + nutrients: + text: nutrients + biocides: + text: biocides + filter_type_enum: + name: filter_type_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + particulate air filter: + text: particulate air filter + chemical air filter: + text: chemical air filter + low-MERV pleated media: + text: low-MERV pleated media + HEPA: + text: HEPA + electrostatic: + text: electrostatic + gas-phase or ultraviolet air treatments: + text: gas-phase or ultraviolet air treatments + light_type_enum: + name: light_type_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west + natural light: + text: natural light + electric light: + text: electric light + desk lamp: + text: desk lamp + flourescent lights: + text: flourescent lights + none: + text: none + arch_struc_enum: + name: arch_struc_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + building: + text: building + shed: + text: shed + home: + text: home + wall_const_type_enum: + name: wall_const_type_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + frame construction: + text: frame construction + joisted masonry: + text: joisted masonry + light noncombustible: + text: light noncombustible + masonry noncombustible: + text: masonry noncombustible + modified fire resistive: + text: modified fire resistive + fire resistive: + text: fire resistive + occup_document_enum: + name: occup_document_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + automated count: + text: automated count + estimate: + text: estimate + manual count: + text: manual count + videos: + text: videos + drainage_class_enum: + name: drainage_class_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + very poorly: + text: very poorly + poorly: + text: poorly + somewhat poorly: + text: somewhat poorly + moderately well: + text: moderately well + well: + text: well + excessively drained: + text: excessively drained room_type_enum: name: room_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + attic: + text: attic + bathroom: + text: bathroom + closet: + text: closet + conference room: + text: conference room + elevator: + text: elevator + examining room: + text: examining room + hallway: + text: hallway + kitchen: + text: kitchen + mail room: + text: mail room + private office: + text: private office + open office: + text: open office + stairwell: + text: stairwell + ',restroom': + text: ',restroom' + lobby: + text: lobby + vestibule: + text: vestibule + mechanical or electrical room: + text: mechanical or electrical room + data center: + text: data center + laboratory_wet: + text: laboratory_wet + laboratory_dry: + text: laboratory_dry + gymnasium: + text: gymnasium + natatorium: + text: natatorium + auditorium: + text: auditorium + lockers: + text: lockers + cafe: + text: cafe + warehouse: + text: warehouse + room_loc_enum: + name: room_loc_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + corner room: + text: corner room + interior room: + text: interior room + exterior wall: + text: exterior wall + int_wall_cond_enum: + name: int_wall_cond_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + new: + text: new + visible wear: + text: visible wear + needs repair: + text: needs repair + damaged: + text: damaged + rupture: + text: rupture + cur_land_use_enum: + name: cur_land_use_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + badlands: + text: badlands + cities: + text: cities + conifers: + text: conifers + annotations: + originally: + tag: originally + value: conifers (e.g. pine,spruce,fir,cypress) + examples: + - value: cypress + - value: fir + - value: pine + - value: spruce + crop trees: + text: crop trees + annotations: + originally: + tag: originally + value: crop trees (nuts,fruit,christmas trees,nursery trees) + examples: + - value: christmas trees + - value: fruit + - value: nursery trees + - value: nuts + farmstead: + text: farmstead + gravel: + text: gravel + hardwoods: + text: hardwoods + annotations: + originally: + tag: originally + value: hardwoods (e.g. oak,hickory,elm,aspen) + examples: + - value: aspen + - value: elm + - value: hickory + - value: oak + hayland: + text: hayland + horticultural plants: + text: horticultural plants + annotations: + originally: + tag: originally + value: horticultural plants (e.g. tulips) + examples: + - value: tulips + industrial areas: + text: industrial areas + intermixed hardwood and conifers: + text: intermixed hardwood and conifers + marshlands: + text: marshlands + annotations: + originally: + tag: originally + value: marshlands (grass,sedges,rushes) + examples: + - value: grass + - value: rushes + - value: sedgees + meadows: + text: meadows + annotations: + originally: + tag: originally + value: meadows (grasses,alfalfa,fescue,bromegrass,timothy) + examples: + - value: alfalfa + - value: bromegrass + - value: fescue + - value: grasses + - value: timothy + mines/quarries: + text: mines/quarries + mudflats: + text: mudflats + oil waste areas: + text: oil waste areas + pastureland: + text: pastureland + annotations: + originally: + tag: originally + value: pastureland (grasslands used for livestock grazing) + comments: + - grasslands used for livestock grazing + permanent snow or ice: + text: permanent snow or ice + rainforest: + text: rainforest + annotations: + originally: + tag: originally + value: rainforest (evergreen forest receiving greater than 406 cm annual + rainfall) + comments: + - evergreen forest receiving greater than 406 cm annual rainfall + rangeland: + text: rangeland + roads/railroads: + text: roads/railroads + rock: + text: rock + row crops: + text: row crops + saline seeps: + text: saline seeps + salt flats: + text: salt flats + sand: + text: sand + shrub crops: + text: shrub crops + annotations: + originally: + tag: originally + value: shrub crops (blueberries,nursery ornamentals,filberts) + examples: + - value: blueberries + - value: filberts + - value: nursery ornamentals + shrub land: + text: shrub land + annotations: + originally: + tag: originally + value: shrub land (e.g. mesquite,sage-brush,creosote bush,shrub oak,eucalyptus) + examples: + - value: creosote bush + - value: eucalyptus + - value: mesquite + - value: sage-brush + - value: shrub oak + small grains: + text: small grains + successional shrub land: + text: successional shrub land + annotations: + originally: + tag: originally + value: successional shrub land (tree saplings,hazels,sumacs,chokecherry,shrub + dogwoods,blackberries) + examples: + - value: blackberries + - value: chokecherry + - value: hazels + - value: shrub dogwoods + - value: sumacs + - value: tree saplings + swamp: + text: swamp + annotations: + originally: + tag: originally + value: swamp (permanent or semi-permanent water body dominated by woody + plants) + comments: + - permanent or semi-permanent water body dominated by woody plants + tropical: + text: tropical + annotations: + originally: + tag: originally + value: tropical (e.g. mangrove,palms) + examples: + - value: mangrove + - value: palms + tundra: + text: tundra + annotations: + originally: + tag: originally + value: tundra (mosses,lichens) + examples: + - value: lichens + - value: mosses + vegetable crops: + text: vegetable crops + vine crops: + text: vine crops + annotations: + originally: + tag: originally + value: vine crops (grapes) + examples: + - value: grapes + door_mat_enum: + name: door_mat_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - attic: - text: attic - bathroom: - text: bathroom - closet: - text: closet - conference room: - text: conference room - elevator: - text: elevator - examining room: - text: examining room - hallway: - text: hallway - kitchen: - text: kitchen - mail room: - text: mail room - private office: - text: private office - open office: - text: open office - stairwell: - text: stairwell - ',restroom': - text: ',restroom' - lobby: - text: lobby - vestibule: - text: vestibule - mechanical or electrical room: - text: mechanical or electrical room - data center: - text: data center - laboratory_wet: - text: laboratory_wet - laboratory_dry: - text: laboratory_dry - gymnasium: - text: gymnasium - natatorium: - text: natatorium - auditorium: - text: auditorium - lockers: - text: lockers - cafe: - text: cafe - warehouse: - text: warehouse - samp_capt_status_enum: - name: samp_capt_status_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + aluminum: + text: aluminum + cellular PVC: + text: cellular PVC + engineered plastic: + text: engineered plastic + fiberboard: + text: fiberboard + fiberglass: + text: fiberglass + metal: + text: metal + thermoplastic alloy: + text: thermoplastic alloy + vinyl: + text: vinyl + wood: + text: wood + wood/plastic composite: + text: wood/plastic composite + fao_class_enum: + name: fao_class_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - active surveillance in response to an outbreak: - text: active surveillance in response to an outbreak - active surveillance not initiated by an outbreak: - text: active surveillance not initiated by an outbreak - farm sample: - text: farm sample - market sample: - text: market sample - other: - text: other + Acrisols: + text: Acrisols + Andosols: + text: Andosols + Arenosols: + text: Arenosols + Cambisols: + text: Cambisols + Chernozems: + text: Chernozems + Ferralsols: + text: Ferralsols + Fluvisols: + text: Fluvisols + Gleysols: + text: Gleysols + Greyzems: + text: Greyzems + Gypsisols: + text: Gypsisols + Histosols: + text: Histosols + Kastanozems: + text: Kastanozems + Lithosols: + text: Lithosols + Luvisols: + text: Luvisols + Nitosols: + text: Nitosols + Phaeozems: + text: Phaeozems + Planosols: + text: Planosols + Podzols: + text: Podzols + Podzoluvisols: + text: Podzoluvisols + Rankers: + text: Rankers + Regosols: + text: Regosols + Rendzinas: + text: Rendzinas + Solonchaks: + text: Solonchaks + Solonetz: + text: Solonetz + Vertisols: + text: Vertisols + Yermosols: + text: Yermosols slots: neon_deims_sdr_link: name: neon_deims_sdr_link - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string neon_eco_type: name: neon_eco_type - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string neon_soil_type: name: neon_soil_type - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string ecosystem_path_id: name: ecosystem_path_id description: A unique id representing the GOLD classifers associated with a sample. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string habitat: name: habitat - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string location: name: location - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string community: name: community - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string ncbi_taxonomy_name: name: ncbi_taxonomy_name - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string ncbi_project_name: name: ncbi_project_name - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string sample_collection_site: name: sample_collection_site - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string sample_collection_year: name: sample_collection_year - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer sample_collection_month: name: sample_collection_month - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc status: name: status - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: StatusEnum library_preparation_kit: name: library_preparation_kit - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string extraction_method: name: extraction_method - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc extraction_target: name: extraction_target - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: ExtractionTargetEnum quality_control_report: name: quality_control_report - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: QualityControlReport pcr_cycles: name: pcr_cycles - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc exact_mappings: - OBI:0002475 range: integer sample_mass: name: sample_mass - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: QuantityValue library_type: name: library_type title: library type examples: - value: DNA - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: LibraryTypeEnum zinc: name: zinc @@ -3224,7 +3221,7 @@ slots: title: zinc examples: - value: 2.5 mg/kg - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://www.ornl.gov/content/bio-scales-0 aliases: @@ -3247,7 +3244,7 @@ slots: title: manganese examples: - value: 24.7 mg/kg - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://www.ornl.gov/content/bio-scales-0 aliases: @@ -3270,7 +3267,7 @@ slots: title: ammonium nitrogen examples: - value: 2.3 mg/kg - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://www.ornl.gov/content/bio-scales-0 aliases: @@ -3296,7 +3293,7 @@ slots: - often below some specified limit of detection examples: - value: 0.29 mg/kg - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://www.ornl.gov/content/bio-scales-0 aliases: @@ -3320,7 +3317,7 @@ slots: title: nitrite_nitrogen examples: - value: 1.2 mg/kg - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://www.ornl.gov/content/bio-scales-0 aliases: @@ -3347,7 +3344,7 @@ slots: one pH unit examples: - value: 543 mg/kg - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://www.ornl.gov/content/bio-scales-0 - https://secure.caes.uga.edu/extension/publications/files/pdf/C%20874_5.PDF @@ -3376,7 +3373,7 @@ slots: one pH unit examples: - value: 1575 mg/kg - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://www.ornl.gov/content/bio-scales-0 aliases: @@ -3393,7 +3390,7 @@ slots: subtables and can be reported in_subset: - mixs extension - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - environmental package is_a: attribute @@ -3406,7 +3403,7 @@ slots: - first apply to Biosample - try to apply to all Biosamples in a particular nmdc-server SubmissionMetadata? - applying to a Study may nto be granular enough - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: boolean recommended: true collected_from: @@ -3416,43 +3413,43 @@ slots: - add an OBO slot_uri ? comments: - this illustrates implementing a Biosample relation with a (binary) slot - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc domain: Biosample range: FieldResearchSite biosample_categories: name: biosample_categories title: Categories the biosample belongs to - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: true range: biosample_category_enum date_created: name: date_created description: from database class - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc etl_software_version: name: etl_software_version description: from database class - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc related_identifiers: name: related_identifiers description: Identifiers assigned to a thing that is similar to that which is represented in NMDC. Related identifier are not an identical match and may have some variation. title: Related Identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc notes: name: notes description: from study class - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc canary: name: canary description: a slot that can be added and removed as evidence that schema changes have propagated to other systems - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc ess_dive_datasets: name: ess_dive_datasets description: List of ESS-DIVE dataset DOIs - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: true has_credit_associations: name: has_credit_associations @@ -3465,7 +3462,7 @@ slots: semantics: person should get credit X for their participation in the study' notes: - 'had just been "inlined: true"' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc domain: Study slot_uri: prov:qualifiedAssociation multivalued: true @@ -3474,26 +3471,26 @@ slots: study_image: name: study_image description: Links a study to one or more images. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc domain: Study multivalued: true range: ImageValue inlined: true relevant_protocols: name: relevant_protocols - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: true range: string funding_sources: name: funding_sources - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: true range: string applied_role: name: applied_role deprecated: A credit association may have multiple roles. So, use the applied roles slot. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc domain: CreditAssociation slot_uri: prov:hadRole range: credit enum @@ -3505,7 +3502,7 @@ slots: value: 'Identify all CRediT roles associated with this contributor. CRediT Information: https://info.orcid.org/credit-for-research-contribution ; CRediT: https://credit.niso.org/' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc domain: CreditAssociation multivalued: true range: credit enum @@ -3516,7 +3513,7 @@ slots: - prov:agent takes an Agent object. Is a person value an Agent? Also try to relate to principal investigator slot? could include OBI:0000103 principal investigator role... do we need to define the OBI prefix? - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc domain: CreditAssociation range: PersonValue required: true @@ -3525,7 +3522,7 @@ slots: description: Applies to a property that links a database object to a set of objects. This is necessary in a json document to provide context for a list, and to allow for a single json object that combines multiple object types - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixin: true domain: Database multivalued: true @@ -3534,7 +3531,7 @@ slots: name: biosample_set description: This property links a database object to the set of samples within it. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3544,7 +3541,7 @@ slots: name: study_set description: This property links a database object to the set of studies within it. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3552,14 +3549,14 @@ slots: range: Study field_research_site_set: name: field_research_site_set - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc domain: Database multivalued: true range: FieldResearchSite inlined_as_list: true collecting_biosamples_from_site_set: name: collecting_biosamples_from_site_set - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc domain: Database multivalued: true range: CollectingBiosamplesFromSite @@ -3568,7 +3565,7 @@ slots: name: data_object_set description: This property links a database object to the set of data objects within it. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3577,7 +3574,7 @@ slots: genome_feature_set: name: genome_feature_set description: This property links a database object to the set of all features - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3587,7 +3584,7 @@ slots: name: functional_annotation_set description: This property links a database object to the set of all functional annotations - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3596,7 +3593,7 @@ slots: activity_set: name: activity_set description: This property links a database object to the set of workflow activities. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3606,7 +3603,7 @@ slots: name: mags_activity_set description: This property links a database object to the set of MAGs analysis activities. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3616,7 +3613,7 @@ slots: name: metabolomics_analysis_activity_set description: This property links a database object to the set of metabolomics analysis activities. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3626,7 +3623,7 @@ slots: name: metaproteomics_analysis_activity_set description: This property links a database object to the set of metaproteomics analysis activities. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3636,7 +3633,7 @@ slots: name: metagenome_annotation_activity_set description: This property links a database object to the set of metagenome annotation activities. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3646,7 +3643,7 @@ slots: name: metagenome_assembly_set description: This property links a database object to the set of metagenome assembly activities. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3656,7 +3653,7 @@ slots: name: metagenome_sequencing_activity_set description: This property links a database object to the set of metagenome sequencing activities. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3666,7 +3663,7 @@ slots: name: metatranscriptome_activity_set description: This property links a database object to the set of metatranscriptome analysis activities. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3676,7 +3673,7 @@ slots: name: read_qc_analysis_activity_set description: This property links a database object to the set of read QC analysis activities. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3686,7 +3683,7 @@ slots: name: read_based_taxonomy_analysis_activity_set description: This property links a database object to the set of read based analysis activities. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3696,7 +3693,7 @@ slots: name: nom_analysis_activity_set description: This property links a database object to the set of natural organic matter (NOM) analysis activities. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3706,7 +3703,7 @@ slots: name: omics_processing_set description: This property links a database object to the set of omics processings within it. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3714,7 +3711,7 @@ slots: range: OmicsProcessing pooling_set: name: pooling_set - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3724,7 +3721,7 @@ slots: name: processed_sample_set description: This property links a database object to the set of processed samples within it. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3734,7 +3731,7 @@ slots: name: extraction_set description: This property links a database object to the set of extractions within it. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3744,7 +3741,7 @@ slots: name: library_preparation_set description: This property links a database object to the set of DNA extractions within it. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - library_construction_set mixins: @@ -3761,7 +3758,7 @@ slots: examples: - value: metatranscriptome - value: metagenome - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: ControlledTermValue data_object_type: name: data_object_type @@ -3769,7 +3766,7 @@ slots: examples: - value: FT ICR-MS Analysis Results - value: GC-MS Metabolomics Results - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: file type enum compression_type: name: compression_type @@ -3778,16 +3775,16 @@ slots: - consider enum examples: - value: gzip - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string instrument_name: name: instrument_name description: The name of the instrument that was used for processing the sample. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc gold_path_field: name: gold_path_field description: This is a grouping for any of the gold path fields - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: attribute abstract: true range: string @@ -3804,7 +3801,7 @@ slots: are Environmental, Host-associated, and Engineered. They represent samples collected from a natural environment or from another organism or from engineered environments like bioreactors respectively. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://gold.jgi.doe.gov/help is_a: gold_path_field @@ -3818,7 +3815,7 @@ slots: Ecosystem categories for Host-associated samples can be individual hosts or phyla and for engineered samples it may be manipulated environments like bioreactors, solid waste etc. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://gold.jgi.doe.gov/help is_a: gold_path_field @@ -3833,7 +3830,7 @@ slots: or Thermal springs etc. Ecosystem category Air may have Indoor air or Outdoor air as different Ecosystem Types. In the case of Host-associated samples, ecosystem type can represent Respiratory system, Digestive system, Roots etc. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://gold.jgi.doe.gov/help is_a: gold_path_field @@ -3846,7 +3843,7 @@ slots: - Ecosystem Type Marine (Environmental -> Aquatic -> Marine) is further divided (for example) into Intertidal zone, Coastal, Pelagic, Intertidal zone etc. in the Ecosystem subtype category. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://gold.jgi.doe.gov/help is_a: gold_path_field @@ -3858,44 +3855,44 @@ slots: comments: - Specific ecosystems help to define samples based on very specific characteristics of an environment under the five-level classification system. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://gold.jgi.doe.gov/help is_a: gold_path_field principal_investigator: name: principal_investigator description: Principal Investigator who led the study and/or generated the dataset. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - PI is_a: attribute range: PersonValue doi: name: doi - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: attribute range: AttributeValue add_date: name: add_date description: The date on which the information was added to the database. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string mod_date: name: mod_date description: The last date on which the database information was modified. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string sample_collection_day: name: sample_collection_day - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer sample_collection_hour: name: sample_collection_hour - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer sample_collection_minute: name: sample_collection_minute - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer salinity_category: name: salinity_category @@ -3903,91 +3900,91 @@ slots: halotolerant, hypersaline, huryhaline' notes: - maps to gold:salinity - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://github.com/microbiomedata/nmdc-metadata/pull/297 range: string soluble_iron_micromol: name: soluble_iron_micromol - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string host_name: name: host_name - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string subsurface_depth: name: subsurface_depth - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: QuantityValue proport_woa_temperature: name: proport_woa_temperature - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string biogas_temperature: name: biogas_temperature - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string soil_annual_season_temp: name: soil_annual_season_temp - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string biogas_retention_time: name: biogas_retention_time - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string processing_institution: name: processing_institution description: The organization that processed the sample. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: processing_institution_enum completion_date: name: completion_date - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string metagenome_assembly_parameter: name: metagenome_assembly_parameter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc has_peptide_quantifications: name: has_peptide_quantifications - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: true range: PeptideQuantification asm_score: name: asm_score description: A score for comparing metagenomic assembly quality from same sample. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float scaffolds: name: scaffolds description: Total sequence count of all scaffolds. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float scaf_logsum: name: scaf_logsum description: The sum of the (length*log(length)) of all scaffolds, times some constant. Increase the contiguity, the score will increase - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float scaf_powsum: name: scaf_powsum description: Powersum of all scaffolds is the same as logsum except that it uses the sum of (length*(length^P)) for some power P (default P=0.25). - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float scaf_max: name: scaf_max description: Maximum scaffold length. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float scaf_bp: name: scaf_bp description: Total size in bp of all scaffolds. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float scaf_n50: @@ -3995,7 +3992,7 @@ slots: description: Given a set of scaffolds, each with its own length, the N50 count is defined as the smallest number of scaffolds whose length sum makes up half of genome size. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float scaf_n90: @@ -4003,14 +4000,14 @@ slots: description: Given a set of scaffolds, each with its own length, the N90 count is defined as the smallest number of scaffolds whose length sum makes up 90% of genome size. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float scaf_l50: name: scaf_l50 description: Given a set of scaffolds, the L50 is defined as the sequence length of the shortest scaffold at 50% of the total genome length. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float scaf_l90: @@ -4018,38 +4015,38 @@ slots: description: The L90 statistic is less than or equal to the L50 statistic; it is the length for which the collection of all scaffolds of that length or longer contains at least 90% of the sum of the lengths of all scaffolds. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float scaf_n_gt50k: name: scaf_n_gt50k description: Total sequence count of scaffolds greater than 50 KB. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float scaf_l_gt50k: name: scaf_l_gt50k description: Total size in bp of all scaffolds greater than 50 KB. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float scaf_pct_gt50k: name: scaf_pct_gt50k description: Total sequence size percentage of scaffolds greater than 50 KB. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float contigs: name: contigs description: The sum of the (length*log(length)) of all contigs, times some constant. Increase the contiguity, the score will increase - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float contig_bp: name: contig_bp description: Total size in bp of all contigs. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float ctg_n50: @@ -4057,14 +4054,14 @@ slots: description: Given a set of contigs, each with its own length, the N50 count is defined as the smallest number_of_contigs whose length sum makes up half of genome size. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float ctg_l50: name: ctg_l50 description: Given a set of contigs, the L50 is defined as the sequence length of the shortest contig at 50% of the total genome length. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float ctg_n90: @@ -4072,7 +4069,7 @@ slots: description: Given a set of contigs, each with its own length, the N90 count is defined as the smallest number of contigs whose length sum makes up 90% of genome size. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float ctg_l90: @@ -4080,221 +4077,221 @@ slots: description: The L90 statistic is less than or equal to the L50 statistic; it is the length for which the collection of all contigs of that length or longer contains at least 90% of the sum of the lengths of all contigs. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float ctg_logsum: name: ctg_logsum description: Maximum contig length. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float ctg_powsum: name: ctg_powsum description: Powersum of all contigs is the same as logsum except that it uses the sum of (length*(length^P)) for some power P (default P=0.25). - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float ctg_max: name: ctg_max description: Maximum contig length. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float gap_pct: name: gap_pct description: The gap size percentage of all scaffolds. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float gc_std: name: gc_std description: Standard deviation of GC content of all contigs. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float gc_avg: name: gc_avg description: Average of GC content of all contigs. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float num_input_reads: name: num_input_reads description: The sequence count number of input reads for assembly. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float num_aligned_reads: name: num_aligned_reads description: The sequence count number of input reads aligned to assembled contigs. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float read_qc_analysis_statistic: name: read_qc_analysis_statistic - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mags_list: name: mags_list - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: true range: MagBin too_short_contig_num: name: too_short_contig_num - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer binned_contig_num: name: binned_contig_num - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer input_contig_num: name: input_contig_num - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer unbinned_contig_num: name: unbinned_contig_num - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer low_depth_contig_num: name: low_depth_contig_num - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer input_read_count: name: input_read_count description: The sequence count number of input reads for QC analysis. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: read_qc_analysis_statistic range: float input_base_count: name: input_base_count description: The nucleotide base count number of input reads for QC analysis. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: read_qc_analysis_statistic range: float output_read_count: name: output_read_count description: After QC analysis sequence count number. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: read_qc_analysis_statistic range: float output_base_count: name: output_base_count description: After QC analysis nucleotide base count number. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: read_qc_analysis_statistic range: float output_read_bases: name: output_read_bases description: TODO - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: float input_read_bases: name: input_read_bases description: 'TODO ' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: float has_calibration: name: has_calibration description: A reference to a file that holds calibration information. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string has_metabolite_quantifications: name: has_metabolite_quantifications - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: true range: MetaboliteQuantification version: name: version - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc total_bases: name: total_bases todos: - this slot needs some basic textual annotations and constraints - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc members_id: name: members_id todos: - this slot needs some basic textual annotations and constraints - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc bin_name: name: bin_name - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string number_of_contig: name: number_of_contig - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer completeness: name: completeness - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: float contamination: name: contamination - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: float gene_count: name: gene_count - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer bin_quality: name: bin_quality - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string num_16s: name: num_16s - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer num_5s: name: num_5s - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer num_23s: name: num_23s - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer num_t_rna: name: num_t_rna - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer gtdbtk_domain: name: gtdbtk_domain - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string gtdbtk_phylum: name: gtdbtk_phylum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string gtdbtk_class: name: gtdbtk_class - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string gtdbtk_order: name: gtdbtk_order - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string gtdbtk_family: name: gtdbtk_family - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string gtdbtk_genus: name: gtdbtk_genus - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string gtdbtk_species: name: gtdbtk_species - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string language: name: language description: Should use ISO 639-1 code e.g. "en", "fr" - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: language code attribute: name: attribute description: 'A attribute of a biosample. Examples: depth, habitat, material. For NMDC, attributes SHOULD be mapped to terms within a MIxS template' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - field - property @@ -4306,14 +4303,14 @@ slots: name: has_raw_value description: The value that was specified for an annotation in raw form, i.e. a string. E.g. "2 cm" or "2-4 cm" - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc domain: AttributeValue multivalued: false range: string has_unit: name: has_unit description: Links a QuantityValue to a unit - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - scale mappings: @@ -4323,7 +4320,7 @@ slots: has_numeric_value: name: has_numeric_value description: Links a quantity value to a number - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mappings: - qud:quantityValue - schema:value @@ -4333,18 +4330,18 @@ slots: name: has_minimum_numeric_value description: The minimum value part, expressed as number, of the quantity value when the value covers a range. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: has_numeric_value has_maximum_numeric_value: name: has_maximum_numeric_value description: The maximum value part, expressed as number, of the quantity value when the value covers a range. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: has_numeric_value has_boolean_value: name: has_boolean_value description: Links a quantity value to a boolean - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: false range: boolean latitude: @@ -4352,7 +4349,7 @@ slots: description: latitude examples: - value: '-33.460524' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mappings: - schema:latitude domain: GeolocationValue @@ -4363,7 +4360,7 @@ slots: description: longitude examples: - value: '150.168149' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mappings: - schema:longitude domain: GeolocationValue @@ -4374,38 +4371,38 @@ slots: description: pointer to an ontology class notes: - 'removed ''slot_uri: rdf:type''' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc domain: ControlledTermValue range: OntologyClass inlined: true orcid: name: orcid description: The ORCID of a person. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc domain: PersonValue range: string email: name: email description: An email address for an entity such as a person. This should be the primary email address used. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc slot_uri: schema:email range: string alternate_emails: name: alternate_emails description: One or more other email addresses for an entity. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string profile_image_url: name: profile_image_url description: A url that points to an image of a person. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc domain: PersonValue range: string has_input: name: has_input description: An input to a process. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - input domain: NamedThing @@ -4414,7 +4411,7 @@ slots: has_output: name: has_output description: An output biosample to a processing step - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - output domain: NamedThing @@ -4424,7 +4421,7 @@ slots: name: part_of description: Links a resource to another resource that either logically or physically includes it. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - is part of domain: NamedThing @@ -4434,44 +4431,44 @@ slots: execution_resource: name: execution_resource description: 'Example: NERSC-Cori' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: attribute url: name: url notes: - See issue 207 - this clashes with the mixs field - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: attribute range: string display_order: name: display_order description: When rendering information, this attribute to specify the order in which the information should be rendered. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: attribute git_url: name: git_url description: 'Example: https://github.com/microbiomedata/mg_annotation/releases/tag/0.1' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: attribute range: string file_size_bytes: name: file_size_bytes description: Size of the file in bytes - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: attribute range: bytes md5_checksum: name: md5_checksum description: MD5 checksum of file (pre-compressed) - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: attribute range: string abstract: name: abstract description: The abstract of manuscript/grant associated with the entity; i.e., a summary of the resource. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc exact_mappings: - dcterms:abstract range: string @@ -4479,7 +4476,7 @@ slots: name: keywords description: A list of keywords that used to associate the entity. Keywords SHOULD come from controlled vocabularies, including MESH, ENVO. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mappings: - dcterms:subject multivalued: true @@ -4488,7 +4485,7 @@ slots: name: objective description: The scientific objectives associated with the entity. It SHOULD correspond to scientific norms for objectives field in a structured abstract. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mappings: - sio:000337 multivalued: false @@ -4496,95 +4493,95 @@ slots: websites: name: websites description: A list of websites that are associated with the entity. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: true range: string publications: name: publications description: A list of publications that are associated with the entity. The publications SHOULD be given using an identifier, such as a DOI or Pubmed ID, if possible. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: true range: string highest_similarity_score: name: highest_similarity_score description: 'TODO: Yuri to fill in' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: float metabolite_quantified: name: metabolite_quantified description: the specific metabolite identifier - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: ChemicalEntity all_proteins: name: all_proteins description: the list of protein identifiers that are associated with the peptide sequence - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: true range: GeneProduct best_protein: name: best_protein description: the specific protein identifier most correctly associated with the peptide sequence - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: GeneProduct min_q_value: name: min_q_value description: smallest Q-Value associated with the peptide sequence as provided by MSGFPlus tool - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - OBI:0001442 range: float peptide_sequence: name: peptide_sequence - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string peptide_spectral_count: name: peptide_spectral_count description: sum of filter passing MS2 spectra associated with the peptide sequence within a given LC-MS/MS data file - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer peptide_sum_masic_abundance: name: peptide_sum_masic_abundance description: combined MS1 extracted ion chromatograms derived from MS2 spectra associated with the peptide sequence from a given LC-MS/MS data file using the MASIC tool - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer chemical_formula: name: chemical_formula - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc inchi_key: name: inchi_key notes: - 'key set to false due to rare collisions: Pletnev I, Erin A, McNaught A, Blinov K, Tchekhovskoi D, Heller S (2012) InChIKey collision resistance: an experimental testing. J Cheminform. 4:12' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc inchi: name: inchi - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc peptide_sequence_count: name: peptide_sequence_count - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc protein_spectral_count: name: protein_spectral_count - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc protein_sum_masic_abundance: name: protein_sum_masic_abundance - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc smiles: name: smiles - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc started_at_time: name: started_at_time notes: - 'The regex for ISO-8601 format was taken from here: https://www.myintervals.com/blog/2009/05/20/iso-8601-date-validation-that-doesnt-suck/ It may not be complete, but it is good enough for now.' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mappings: - prov:startedAtTime range: datetime @@ -4594,26 +4591,26 @@ slots: notes: - 'The regex for ISO-8601 format was taken from here: https://www.myintervals.com/blog/2009/05/20/iso-8601-date-validation-that-doesnt-suck/ It may not be complete, but it is good enough for now.' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mappings: - prov:endedAtTime range: datetime pattern: ^([\+-]?\d{4}(?!\d{2}\b))((-?)((0[1-9]|1[0-2])(\3([12]\d|0[1-9]|3[01]))?|W([0-4]\d|5[0-2])(-?[1-7])?|(00[1-9]|0[1-9]\d|[12]\d{2}|3([0-5]\d|6[1-6])))([T\s]((([01]\d|2[0-3])((:?)[0-5]\d)?|24\:?00)([\.,]\d+(?!:))?)?(\17[0-5]\d([\.,]\d+)?)?([zZ]|([\+-])([01]\d|2[0-3]):?([0-5]\d)?)?)?)?$ was_informed_by: name: was_informed_by - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mappings: - prov:wasInformedBy range: Activity was_generated_by: name: was_generated_by - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mappings: - prov:wasGeneratedBy range: Activity used: name: used - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mappings: - prov:used domain: Activity @@ -4632,19 +4629,19 @@ slots: examples: - value: nmdc:mgmag-00-x012.1_7_c1 description: https://github.com/microbiomedata/nmdc-schema/pull/499#discussion_r1018499248 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc identifier: true range: uriorcurie required: true name: name: name description: A human readable label for an entity - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string description: name: description description: a human-readable description of a thing - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc slot_uri: dcterms:description range: string type: @@ -4657,7 +4654,7 @@ slots: examples: - value: nmdc:Biosample - value: nmdc:Study - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string title: name: title @@ -4665,7 +4662,7 @@ slots: assigned to it. For example, when extracting study information for GOLD, the GOLD system has assigned a name/label. However, for display purposes, we may also wish the capture the title of the proposal that was used to fund the study. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc exact_mappings: - dcterms:title range: string @@ -4673,7 +4670,7 @@ slots: name: alternative_titles description: A list of alternative titles for the entity. The distinction between title and alternative titles is application-specific. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc exact_mappings: - dcterms:alternative multivalued: true @@ -4682,7 +4679,7 @@ slots: name: alternative_names description: A list of alternative names used to refer to the entity. The distinction between name and alternative names is application-specific. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc exact_mappings: - dcterms:alternative - skos:altLabel @@ -4692,13 +4689,13 @@ slots: name: alternative_descriptions description: A list of alternative descriptions for the entity. The distinction between description and alternative descriptions is application-specific. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: true range: string alternative_identifiers: name: alternative_identifiers description: A list of alternative identifiers for the entity. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: true range: uriorcurie pattern: ^[a-zA-Z_][a-zA-Z0-9_]*:[a-zA-Z_][a-zA-Z0-9_]*$ @@ -4711,7 +4708,7 @@ slots: - We are using string representations of dates until all components of our ecosystem can handle ISO 8610 dates - The date should be formatted as YYYY-MM-DD - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string end_date: name: end_date @@ -4722,19 +4719,19 @@ slots: - We are using string representations of dates until all components of our ecosystem can handle ISO 8610 dates - The date should be formatted as YYYY-MM-DD - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string protocol_link: name: protocol_link - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: Protocol nucleic_acid_concentration: name: nucleic_acid_concentration - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: InstrumentValue biomaterial_purity: name: biomaterial_purity - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: QuantityValue external_database_identifiers: name: external_database_identifiers @@ -4743,7 +4740,7 @@ slots: - had tried ranges of external identifier and string comments: - The value of this field is always a registered CURIE - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc close_mappings: - skos:closeMatch is_a: alternative_identifiers @@ -4760,26 +4757,26 @@ slots: - add is_a or mixin modeling, like other external_database_identifiers - what class would IMG records belong to?! Are they Studies, Biosamples, or something else? - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: external_database_identifiers pattern: ^img\.taxon:[a-zA-Z0-9_][a-zA-Z0-9_\/\.]*$ igsn_identifiers: name: igsn_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixin: true gold_identifiers: name: gold_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://gold.jgi.doe.gov/ mixin: true emsl_identifiers: name: emsl_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixin: true mgnify_identifiers: name: mgnify_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://www.ebi.ac.uk/metagenomics/ mixin: true @@ -4792,7 +4789,7 @@ slots: the initial submission - 'the first letter of the accession indicates which partner accepted the initial submission: E for ENA, D for DDBJ, or S or N for NCBI.' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://www.insdc.org/ - https://ena-docs.readthedocs.io/en/latest/submit/general-guide/accessions.html @@ -4804,30 +4801,30 @@ slots: massive_identifiers: name: massive_identifiers description: identifiers for entities according to MASSIVE - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixin: true neon_identifiers: name: neon_identifiers description: identifiers for entities according to NEON - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixin: true jgi_portal_identifiers: name: jgi_portal_identifiers description: identifiers for entities according to JGI Portal - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixin: true gnps_identifiers: name: gnps_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixin: true study_identifiers: name: study_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: external_database_identifiers abstract: true neon_study_identifiers: name: neon_study_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: study_identifiers mixins: - neon_identifiers @@ -4838,7 +4835,7 @@ slots: - value: https://identifiers.org/insdc.sra:SRP121659 description: Avena fatua rhizosphere microbial communities - H1_Rhizo_Litter_2 metatranscriptome - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://github.com/bioregistry/bioregistry/issues/109 - https://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=studies @@ -4861,7 +4858,7 @@ slots: - value: https://identifiers.org/bioproject:PRJNA366857 description: Avena fatua rhizosphere microbial communities - H1_Rhizo_Litter_2 metatranscriptome - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://www.ncbi.nlm.nih.gov/bioproject/ - https://www.ddbj.nig.ac.jp/bioproject/index-e.html @@ -4880,7 +4877,7 @@ slots: - uses the prefix GS (but possibly in a different case) examples: - value: https://identifiers.org/gold:Gs0110115 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://gold.jgi.doe.gov/studies is_a: study_identifiers @@ -4892,7 +4889,7 @@ slots: description: identifiers for corresponding project in MGnify examples: - value: https://identifiers.org/mgnify.proj:MGYS00005757 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: study_identifiers mixins: - mgnify_identifiers @@ -4908,7 +4905,7 @@ slots: - this identifier was registered with bioregistry but not identifiers.org examples: - value: gnps.task:4b848c342a4f4abc871bdf8a09a60807 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://microbiomedata.github.io/nmdc-schema/MetabolomicsAnalysisActivity/ is_a: study_identifiers @@ -4924,7 +4921,7 @@ slots: - value: MASSIVE:MSV000090886 description: MASSIVE id for MASSIVE's metabolomics analysis of Gb0305843, resolvable with prefix http://identifiers.org/massive/ - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://massive.ucsd.edu/ProteoSAFe/dataset.jsp?task=83574f41458a4b259621d5c32a4d82f9 is_a: study_identifiers @@ -4935,18 +4932,18 @@ slots: name: emsl_project_dois description: A DOI that resolves to a EMSL Research Campaign page. title: EMSL Project DOI - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: study_identifiers mixins: - emsl_identifiers biosample_identifiers: name: biosample_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: external_database_identifiers abstract: true neon_biosample_identifiers: name: neon_biosample_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: biosample_identifiers mixins: - neon_identifiers @@ -4955,7 +4952,7 @@ slots: description: identifiers for corresponding sample in GOLD examples: - value: https://identifiers.org/gold:Gb0312930 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: biosample_identifiers mixins: - gold_identifiers @@ -4968,7 +4965,7 @@ slots: - value: https://identifiers.org/biosample:SAMD00212331 description: I13_N_5-10 sample from Soil fungal diversity along elevational gradients - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://github.com/bioregistry/bioregistry/issues/108 - https://www.ebi.ac.uk/biosamples/ @@ -4993,7 +4990,7 @@ slots: - value: https://identifiers.org/insdc.sra:DRS166340 description: I13_N_5-10 sample from Soil fungal diversity along elevational gradients - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: biosample_identifiers mixins: - insdc_identifiers @@ -5008,7 +5005,7 @@ slots: - removed "planned" once NEXUS is online - make an emsl identifiers mixin - determine real expansion for emsl prefix - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: biosample_identifiers mixins: - emsl_identifiers @@ -5016,13 +5013,13 @@ slots: name: igsn_biosample_identifiers description: A list of identifiers for the biosample from the IGSN database. title: IGSN Biosample Identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: biosample_identifiers mixins: - igsn_identifiers omics_processing_identifiers: name: omics_processing_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: external_database_identifiers abstract: true gold_sequencing_project_identifiers: @@ -5030,21 +5027,21 @@ slots: description: identifiers for corresponding sequencing project in GOLD examples: - value: https://identifiers.org/gold:Gp0108335 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: omics_processing_identifiers mixins: - gold_identifiers pattern: ^GOLD:Gp[0-9]+$ insdc_experiment_identifiers: name: insdc_experiment_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: external_database_identifiers mixins: - insdc_identifiers pattern: ^insdc.sra:(E|D|S)RX[0-9]{6,}$ analysis_identifiers: name: analysis_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: external_database_identifiers abstract: true gold_analysis_project_identifiers: @@ -5052,7 +5049,7 @@ slots: description: identifiers for corresponding analysis project in GOLD examples: - value: https://identifiers.org/gold:Ga0526289 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: analysis_identifiers mixins: - gold_identifiers @@ -5065,7 +5062,7 @@ slots: - value: https://www.ebi.ac.uk/metagenomics/runs/DRR218479 description: Illumina MiSeq paired end sequencing of SAMD00212331 - value: https://www.ebi.ac.uk/ena/browser/view/ERR436051 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: analysis_identifiers mixins: - insdc_identifiers @@ -5077,17 +5074,17 @@ slots: examples: - value: https://www.ebi.ac.uk/metagenomics/analyses/MGYA00002270 description: combined analyses (taxonomic, functional) of sample ERS438107 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: analysis_identifiers mixins: - mgnify_identifiers assembly_identifiers: name: assembly_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc abstract: true insdc_assembly_identifiers: name: insdc_assembly_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: assembly_identifiers mixins: - insdc_identifiers @@ -5095,34 +5092,34 @@ slots: dissolving_activity_set: name: dissolving_activity_set title: dissolving activity set - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: true range: DissolvingActivity inlined_as_list: true material_sample_set: name: material_sample_set title: material sample set - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: true range: MaterialSample inlined_as_list: true material_sampling_activity_set: name: material_sampling_activity_set title: material sampling activity set - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: true range: MaterialSamplingActivity inlined_as_list: true reaction_activity_set: name: reaction_activity_set - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: true range: ReactionActivity inlined_as_list: true dissolution_aided_by: name: dissolution_aided_by title: dissolution aided by - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - shaker range: LabDevice @@ -5130,14 +5127,14 @@ slots: dissolution_reagent: name: dissolution_reagent title: dissolution reagent - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - solvent range: SolventEnum dissolution_volume: name: dissolution_volume title: dissolution volume - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - volume range: QuantityValue @@ -5145,7 +5142,7 @@ slots: dissolved_in: name: dissolved_in title: dissolved in - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - container range: MaterialContainer @@ -5153,24 +5150,24 @@ slots: material_input: name: material_input title: material input - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: MaterialSample material_output: name: material_output title: material output - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: MaterialSample device_type: name: device_type title: device type - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - shaker type range: DeviceTypeEnum activity_speed: name: activity_speed title: activity speed - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - shake_speed range: QuantityValue @@ -5179,13 +5176,13 @@ slots: name: activity_temperature todos: - constrain units - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: QuantityValue inlined: true activity_time: name: activity_time title: activity time - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - shake_time range: QuantityValue @@ -5193,50 +5190,50 @@ slots: container_size: name: container_size title: container size - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: QuantityValue inlined: true container_type: name: container_type title: container type - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: ContainerTypeEnum amount_collected: name: amount_collected title: amount collected - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: QuantityValue inlined: true collected_into: name: collected_into title: collected into - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc sampling_method: name: sampling_method title: sampling method - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: SamplingMethodEnum reaction_aided_by: name: reaction_aided_by title: reaction aided by - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - shaker range: LabDevice inlined: true reaction_temperature: name: reaction_temperature - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc reaction_time: name: reaction_time - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc analysis_type: name: analysis_type description: Select all the data types associated or available for this biosample title: analysis/data type examples: - value: metagenomics; metabolomics; proteomics - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - MIxS:investigation_type rank: 3 @@ -5257,7 +5254,7 @@ slots: to a new vial and generated a new sample)' examples: - value: IGSN:DSJ0284 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 5 string_serialization: '{text}:{text}' multivalued: true @@ -5277,7 +5274,7 @@ slots: are all acceptable. examples: - value: 2021-04-15, 2021-04 and 2021 are all acceptable. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - MIxS:collection_date rank: 2 @@ -5295,7 +5292,7 @@ slots: - 'Time should be entered as HH:MM(:SS) in GMT. See here for a converter: https://www.worldtimebuddy.com/pst-to-gmt-converter' examples: - value: 13:33 or 13:33:55 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - MIxS:collection_date rank: 1 @@ -5314,7 +5311,7 @@ slots: - 'Time should be entered as HH:MM(:SS) in GMT. See here for a converter: https://www.worldtimebuddy.com/pst-to-gmt-converter' examples: - value: 13:33 or 13:33:55 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - MIxS:collection_date rank: 3 @@ -5333,7 +5330,7 @@ slots: data collection template. examples: - value: 'experimental treatment: value' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - MIxS:experimental_factor|additional_info rank: 7 @@ -5349,7 +5346,7 @@ slots: examples: - value: C18 - value: Basix PES, 13-100-106 FisherSci - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - MIxS:filter_type rank: 6 @@ -5368,7 +5365,7 @@ slots: examples: - value: 13C glucose - value: H218O - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - MIxS:chem_administration rank: 16 @@ -5386,7 +5383,7 @@ slots: examples: - value: https://doi.org/10.1016/0038-0717(87)90052-6 - value: https://doi.org/10.1016/0038-0717(87)90052-6 | https://www.sciencedirect.com/science/article/abs/pii/0038071787900526 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - MIxS:micro_biomass_meth rank: 11 @@ -5402,7 +5399,7 @@ slots: examples: - value: https://doi.org/10.1016/0038-0717(87)90052-6 - value: https://doi.org/10.1016/0038-0717(87)90052-6 | https://www.sciencedirect.com/science/article/abs/pii/0038071787900526 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - MIxS:micro_biomass_meth rank: 13 @@ -5418,7 +5415,7 @@ slots: and method are required examples: - value: 0.05 ug C/g dry soil - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - MIxS:microbial_biomass rank: 10 @@ -5434,7 +5431,7 @@ slots: and method are required examples: - value: 0.05 ug N/g dry soil - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - MIxS:microbial_biomass rank: 12 @@ -5448,7 +5445,7 @@ slots: title: non-microbial biomass examples: - value: insect 0.23 ug; plant 1g - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - MIxS:biomass|microbial_biomass rank: 8 @@ -5462,7 +5459,7 @@ slots: - required if "non-microbial biomass" is provided examples: - value: https://doi.org/10.1038/s41467-021-26181-3 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - MIxS:microbial_biomass rank: 9 @@ -5476,7 +5473,7 @@ slots: - required if "org_nitro" is provided examples: - value: https://doi.org/10.1016/0038-0717(85)90144-0 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - MIxS:org_nitro|tot_nitro_cont_meth rank: 14 @@ -5490,7 +5487,7 @@ slots: comments: - This is an open text field to provide any treatments that cannot be captured in the provided slots. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - MIxS:additional_info rank: 15 @@ -5509,7 +5506,7 @@ slots: are all acceptable. examples: - value: 2021-04-15, 2021-04 and 2021 are all acceptable. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - MIxS:collection_date rank: 4 @@ -5527,7 +5524,7 @@ slots: - 'Time should be entered as HH:MM(:SS) in GMT. See here for a converter: https://www.worldtimebuddy.com/pst-to-gmt-converter' examples: - value: 13:33 or 13:33:55 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - MIxS:collection_date rank: 5 @@ -5541,7 +5538,7 @@ slots: - Note DNase treatment is required for all RNA samples. examples: - value: 'no' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 13 slot_group: JGI-Metatranscriptomics range: YesNoEnum @@ -5554,7 +5551,7 @@ slots: values have been pre-filled. examples: - value: '504000' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 19 string_serialization: '{text}' slot_group: JGI-Metatranscriptomics @@ -5567,7 +5564,7 @@ slots: - Recommended value is between 1 and 3. examples: - value: '2.02' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 7 is_a: biomaterial_purity string_serialization: '{float}' @@ -5582,7 +5579,7 @@ slots: - Recommended value is between 1 and 3. examples: - value: '2.02' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 8 is_a: biomaterial_purity string_serialization: '{float}' @@ -5595,7 +5592,7 @@ slots: title: RNA collection site examples: - value: untreated pond water - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 15 string_serialization: '{text}' slot_group: JGI-Metatranscriptomics @@ -5608,7 +5605,7 @@ slots: a fluorometric method. Acceptable values are 0-2000. examples: - value: '100' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - nmdc:nucleic_acid_concentration rank: 5 @@ -5624,7 +5621,7 @@ slots: title: RNA container type examples: - value: plate - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 10 slot_group: JGI-Metatranscriptomics range: JgiContTypeEnum @@ -5640,7 +5637,7 @@ slots: - For partial plates, fill by columns, like B1-G1,A2-H2,A3-D3 (NOT A2-A11,B1-B8). examples: - value: B2 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 11 string_serialization: '{96 well plate pos}' slot_group: JGI-Metatranscriptomics @@ -5654,7 +5651,7 @@ slots: in a plate should have the same plate label. examples: - value: Pond_MT_041618 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 9 string_serialization: '{text < 20 characters}' slot_group: JGI-Metatranscriptomics @@ -5665,7 +5662,7 @@ slots: title: RNA isolation method examples: - value: phenol/chloroform extraction - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 16 string_serialization: '{text}' slot_group: JGI-Metatranscriptomics @@ -5678,7 +5675,7 @@ slots: examples: - value: expected to contain microbes (59%) fungi (30%), viruses (10%), tadpoles (1%) - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 14 string_serialization: '{text}' slot_group: JGI-Metatranscriptomics @@ -5691,7 +5688,7 @@ slots: values have been pre-filled. examples: - value: John Jones - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 18 string_serialization: '{text}' slot_group: JGI-Metatranscriptomics @@ -5704,7 +5701,7 @@ slots: values have been pre-filled. examples: - value: '187654' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 3 string_serialization: '{text}' slot_group: JGI-Metatranscriptomics @@ -5715,7 +5712,7 @@ slots: title: RNA sample format examples: - value: Water - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 12 slot_group: JGI-Metatranscriptomics range: rna_sample_format_enum @@ -5727,7 +5724,7 @@ slots: title: RNA sample name examples: - value: JGI_pond_041618 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 4 string_serialization: '{text}' slot_group: JGI-Metatranscriptomics @@ -5742,7 +5739,7 @@ slots: values have been pre-filled. examples: - value: '1191234' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 1 string_serialization: '{text}' slot_group: JGI-Metatranscriptomics @@ -5755,7 +5752,7 @@ slots: values have been pre-filled. examples: - value: Jane Johnson - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 17 string_serialization: '{text}' slot_group: JGI-Metatranscriptomics @@ -5768,7 +5765,7 @@ slots: values have been pre-filled. examples: - value: JGI Pond metatranscriptomics - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 2 string_serialization: '{text}' slot_group: JGI-Metatranscriptomics @@ -5782,7 +5779,7 @@ slots: has been granted by a project manager examples: - value: '25' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 6 string_serialization: '{float}' slot_group: JGI-Metatranscriptomics @@ -5798,7 +5795,7 @@ slots: - Recommended value is between 1 and 3. examples: - value: '2.02' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 7 is_a: biomaterial_purity string_serialization: '{float}' @@ -5813,7 +5810,7 @@ slots: - Recommended value is between 1 and 3. examples: - value: '2.02' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 8 is_a: biomaterial_purity string_serialization: '{float}' @@ -5826,7 +5823,7 @@ slots: title: DNA collection site examples: - value: untreated pond water - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 15 string_serialization: '{text}' slot_group: JGI-Metagenomics @@ -5839,7 +5836,7 @@ slots: a fluorometric method. Acceptable values are 0-2000. examples: - value: '100' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - nmdc:nucleic_acid_concentration rank: 5 @@ -5855,7 +5852,7 @@ slots: title: DNA container type examples: - value: plate - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 10 slot_group: JGI-Metagenomics range: JgiContTypeEnum @@ -5871,7 +5868,7 @@ slots: - For partial plates, fill by columns, like B1-G1,A2-H2,A3-D3 (NOT A2-A11,B1-B8). examples: - value: B2 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 11 string_serialization: '{96 well plate pos}' slot_group: JGI-Metagenomics @@ -5885,7 +5882,7 @@ slots: in a plate should have the same plate label. examples: - value: Pond_MT_041618 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 9 string_serialization: '{text < 20 characters}' slot_group: JGI-Metagenomics @@ -5897,7 +5894,7 @@ slots: - Note DNase treatment is required for all RNA samples. examples: - value: 'no' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 13 slot_group: JGI-Metagenomics range: YesNoEnum @@ -5908,7 +5905,7 @@ slots: title: DNA isolation method examples: - value: phenol/chloroform extraction - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 16 string_serialization: '{text}' slot_group: JGI-Metagenomics @@ -5921,7 +5918,7 @@ slots: examples: - value: expected to contain microbes (59%) fungi (30%), viruses (10%), tadpoles (1%) - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 14 string_serialization: '{text}' slot_group: JGI-Metagenomics @@ -5934,7 +5931,7 @@ slots: values have been pre-filled. examples: - value: John Jones - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 18 string_serialization: '{text}' slot_group: JGI-Metagenomics @@ -5951,7 +5948,7 @@ slots: values have been pre-filled. examples: - value: '187654' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 3 string_serialization: '{text}' slot_group: JGI-Metagenomics @@ -5962,7 +5959,7 @@ slots: title: DNA sample format examples: - value: Water - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 12 slot_group: JGI-Metagenomics range: dna_sample_format_enum @@ -5974,7 +5971,7 @@ slots: title: DNA sample name examples: - value: JGI_pond_041618 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 4 string_serialization: '{text}' slot_group: JGI-Metagenomics @@ -5987,7 +5984,7 @@ slots: values have been pre-filled. examples: - value: '1191234' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 1 string_serialization: '{text}' slot_group: JGI-Metagenomics @@ -6000,7 +5997,7 @@ slots: values have been pre-filled. examples: - value: Jane Johnson - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 17 string_serialization: '{text}' slot_group: JGI-Metagenomics @@ -6013,7 +6010,7 @@ slots: values have been pre-filled. examples: - value: JGI Pond metagenomics - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 2 string_serialization: '{text}' slot_group: JGI-Metagenomics @@ -6027,7 +6024,7 @@ slots: has been granted by a project manager examples: - value: '25' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 6 string_serialization: '{float}' slot_group: JGI-Metagenomics @@ -6043,7 +6040,7 @@ slots: values have been pre-filled. examples: - value: '504000' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 19 string_serialization: '{text}' slot_group: JGI-Metagenomics @@ -6059,7 +6056,7 @@ slots: - Enter a temperature in celsius. Numeric portion only. examples: - value: '-80' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 4 string_serialization: '{float}' slot_group: EMSL @@ -6068,7 +6065,7 @@ slots: name: project_id description: Proposal IDs or names associated with dataset title: project ID - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 1 string_serialization: '{text}' slot_group: EMSL @@ -6079,7 +6076,7 @@ slots: title: replicate number comments: - This will guide staff in ensuring your samples are blocked & randomized correctly - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 6 string_serialization: '{integer}' slot_group: EMSL @@ -6096,7 +6093,7 @@ slots: - value: 15 g - value: 100 uL - value: 5 mL - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 3 string_serialization: '{float} {unit}' slot_group: EMSL @@ -6109,7 +6106,7 @@ slots: - This can vary from 'environmental package' if the sample is an extraction. examples: - value: water extracted soil - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 2 slot_group: EMSL range: sample_type_enum @@ -6124,7 +6121,7 @@ slots: to EMSL for analyses. examples: - value: '2' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 5 string_serialization: '{integer}' slot_group: EMSL @@ -6146,7 +6143,7 @@ slots: title: absolute air humidity examples: - value: 9 gram per gram - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - absolute air humidity is_a: core field @@ -6169,7 +6166,7 @@ slots: title: secondary and tertiary recovery methods and start date examples: - value: Polymer Addition;2018-06-21T14:30Z - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - secondary and tertiary recovery methods and start date is_a: core field @@ -6190,7 +6187,7 @@ slots: title: additional info examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - additional info is_a: core field @@ -6211,7 +6208,7 @@ slots: title: address examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - address is_a: core field @@ -6233,7 +6230,7 @@ slots: title: adjacent rooms examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - adjacent rooms is_a: core field @@ -6256,7 +6253,7 @@ slots: title: aerospace structure examples: - value: plane - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - aerospace structure is_a: core field @@ -6280,7 +6277,7 @@ slots: title: history/agrochemical additions examples: - value: roundup;5 milligram per liter;2018-06-21 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - history/agrochemical additions is_a: core field @@ -6306,7 +6303,7 @@ slots: title: air particulate matter concentration examples: - value: PM2.5;10 microgram per cubic meter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - air particulate matter concentration is_a: core field @@ -6330,7 +6327,7 @@ slots: title: air temperature examples: - value: 20 degree Celsius - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - air temperature is_a: core field @@ -6356,7 +6353,7 @@ slots: title: air temperature regimen examples: - value: 25 degree Celsius;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - air temperature regimen is_a: core field @@ -6380,7 +6377,7 @@ slots: title: extreme_unusual_properties/Al saturation examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - extreme_unusual_properties/Al saturation is_a: core field @@ -6400,7 +6397,7 @@ slots: title: extreme_unusual_properties/Al saturation method examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - extreme_unusual_properties/Al saturation method is_a: core field @@ -6425,7 +6422,7 @@ slots: title: alkalinity examples: - value: 50 milligram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - alkalinity is_a: core field @@ -6445,7 +6442,7 @@ slots: title: alkalinity method examples: - value: titration - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - alkalinity method is_a: core field @@ -6469,7 +6466,7 @@ slots: title: alkyl diethers examples: - value: 0.005 mole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - alkyl diethers is_a: core field @@ -6491,7 +6488,7 @@ slots: title: altitude examples: - value: 100 meter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - altitude is_a: environment field @@ -6514,7 +6511,7 @@ slots: title: aminopeptidase activity examples: - value: 0.269 mole per liter per hour - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - aminopeptidase activity is_a: core field @@ -6537,7 +6534,7 @@ slots: title: ammonium examples: - value: 1.5 milligram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - ammonium is_a: core field @@ -6561,7 +6558,7 @@ slots: title: amount of light examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - amount of light is_a: core field @@ -6583,7 +6580,7 @@ slots: title: ancestral data examples: - value: A/3*B - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - ancestral data is_a: core field @@ -6608,7 +6605,7 @@ slots: title: mean annual precipitation examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - mean annual precipitation is_a: core field @@ -6631,7 +6628,7 @@ slots: title: mean annual temperature examples: - value: 12.5 degree Celsius - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - mean annual temperature is_a: core field @@ -6658,7 +6655,7 @@ slots: title: antibiotic regimen examples: - value: penicillin;5 milligram;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - antibiotic regimen is_a: core field @@ -6684,7 +6681,7 @@ slots: title: API gravity examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - API gravity is_a: core field @@ -6705,7 +6702,7 @@ slots: title: architectural structure examples: - value: shed - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - architectural structure is_a: core field @@ -6732,7 +6729,7 @@ slots: title: aromatics wt% examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - aromatics wt% is_a: core field @@ -6760,7 +6757,7 @@ slots: title: asphaltenes wt% examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - asphaltenes wt% is_a: core field @@ -6781,7 +6778,7 @@ slots: title: atmospheric data examples: - value: wind speed;9 knots - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - atmospheric data is_a: core field @@ -6806,7 +6803,7 @@ slots: title: average dew point examples: - value: 25.5 degree Celsius - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - average dew point is_a: core field @@ -6827,7 +6824,7 @@ slots: title: average daily occupancy examples: - value: '2' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - average daily occupancy is_a: core field @@ -6851,7 +6848,7 @@ slots: title: average temperature examples: - value: 12.5 degree Celsius - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - average temperature is_a: core field @@ -6874,7 +6871,7 @@ slots: title: bacterial production examples: - value: 5 milligram per cubic meter per day - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - bacterial production is_a: core field @@ -6897,7 +6894,7 @@ slots: title: bacterial respiration examples: - value: 300 micromole oxygen per liter per hour - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - bacterial respiration is_a: core field @@ -6920,7 +6917,7 @@ slots: title: bacterial carbon production examples: - value: 2.53 microgram per liter per hour - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - bacterial carbon production is_a: core field @@ -6944,7 +6941,7 @@ slots: title: barometric pressure examples: - value: 5 millibar - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - barometric pressure is_a: core field @@ -6964,7 +6961,7 @@ slots: title: basin name examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - basin name is_a: core field @@ -6985,7 +6982,7 @@ slots: title: bathroom count examples: - value: '1' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - bathroom count is_a: core field @@ -7005,7 +7002,7 @@ slots: title: bedroom count examples: - value: '2' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - bedroom count is_a: core field @@ -7028,7 +7025,7 @@ slots: title: benzene examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - benzene is_a: core field @@ -7053,7 +7050,7 @@ slots: title: biochemical oxygen demand examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - biochemical oxygen demand is_a: core field @@ -7074,7 +7071,7 @@ slots: title: biocide administration examples: - value: ALPHA 1427;Baker Hughes;2008-01-23 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - biocide administration is_a: core field @@ -7100,7 +7097,7 @@ slots: title: biocide administration method examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - biocide administration method is_a: core field @@ -7121,7 +7118,7 @@ slots: title: biological status examples: - value: natural - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - biological status is_a: core field @@ -7145,7 +7142,7 @@ slots: title: biomass examples: - value: total;20 gram - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - biomass is_a: core field @@ -7167,7 +7164,7 @@ slots: title: biotic regimen examples: - value: sample inoculated with Rhizobium spp. Culture - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - biotic regimen is_a: core field @@ -7188,7 +7185,7 @@ slots: title: observed biotic relationship examples: - value: free living - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - observed biotic relationship is_a: nucleic acid sequence source field @@ -7211,7 +7208,7 @@ slots: title: bishomohopanol examples: - value: 14 microgram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - bishomohopanol is_a: core field @@ -7234,7 +7231,7 @@ slots: title: host blood pressure diastolic examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host blood pressure diastolic is_a: core field @@ -7257,7 +7254,7 @@ slots: title: host blood pressure systolic examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host blood pressure systolic is_a: core field @@ -7280,7 +7277,7 @@ slots: title: bromide examples: - value: 0.05 parts per million - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - bromide is_a: core field @@ -7300,7 +7297,7 @@ slots: title: design, construction, and operation documents examples: - value: maintenance plans - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - design, construction, and operation documents is_a: core field @@ -7321,7 +7318,7 @@ slots: title: building occupancy type examples: - value: market - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - building occupancy type is_a: core field @@ -7341,7 +7338,7 @@ slots: title: building setting examples: - value: rural - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - building setting is_a: core field @@ -7364,7 +7361,7 @@ slots: title: built structure age examples: - value: '15' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - built structure age is_a: core field @@ -7385,7 +7382,7 @@ slots: title: built structure setting examples: - value: rural - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - built structure setting is_a: core field @@ -7407,7 +7404,7 @@ slots: title: built structure type examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - built structure type is_a: core field @@ -7431,7 +7428,7 @@ slots: title: calcium examples: - value: 0.2 micromole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - calcium is_a: core field @@ -7454,7 +7451,7 @@ slots: title: carbon dioxide examples: - value: 410 parts per million - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - carbon dioxide is_a: core field @@ -7477,7 +7474,7 @@ slots: title: carbon monoxide examples: - value: 0.1 parts per million - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - carbon monoxide is_a: core field @@ -7497,7 +7494,7 @@ slots: title: carbon/nitrogen ratio examples: - value: '0.417361111' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - carbon/nitrogen ratio is_a: core field @@ -7520,7 +7517,7 @@ slots: title: ceiling area examples: - value: 25 square meter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - ceiling area is_a: core field @@ -7541,7 +7538,7 @@ slots: title: ceiling condition examples: - value: damaged - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - ceiling condition is_a: core field @@ -7561,7 +7558,7 @@ slots: title: ceiling finish material examples: - value: stucco - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - ceiling finish material is_a: core field @@ -7581,7 +7578,7 @@ slots: title: ceiling structure examples: - value: concrete - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - ceiling structure is_a: core field @@ -7602,7 +7599,7 @@ slots: title: ceiling texture examples: - value: popcorn - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - ceiling texture is_a: core field @@ -7628,7 +7625,7 @@ slots: title: ceiling thermal mass examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - ceiling thermal mass is_a: core field @@ -7648,7 +7645,7 @@ slots: title: ceiling type examples: - value: coffered - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - ceiling type is_a: core field @@ -7668,7 +7665,7 @@ slots: title: ceiling signs of water/mold examples: - value: presence of mold visible - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - ceiling signs of water/mold is_a: core field @@ -7692,7 +7689,7 @@ slots: title: chemical administration examples: - value: agar [CHEBI:2509];2018-05-11T20:00Z - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - chemical administration is_a: core field @@ -7719,7 +7716,7 @@ slots: title: chemical mutagen examples: - value: nitrous acid;0.5 milligram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - chemical mutagen is_a: core field @@ -7745,7 +7742,7 @@ slots: title: chemical oxygen demand examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - chemical oxygen demand is_a: core field @@ -7770,7 +7767,7 @@ slots: title: chemical treatment method examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - chemical treatment method is_a: core field @@ -7795,7 +7792,7 @@ slots: title: chemical treatment examples: - value: ACCENT 1125;DOW;2010-11-17 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - chemical treatment is_a: core field @@ -7815,7 +7812,7 @@ slots: title: chimera check software examples: - value: uchime;v4.1;default parameters - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - chimera check software is_a: sequencing field @@ -7839,7 +7836,7 @@ slots: title: chloride examples: - value: 5000 milligram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - chloride is_a: core field @@ -7862,7 +7859,7 @@ slots: title: chlorophyll examples: - value: 5 milligram per cubic meter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - chlorophyll is_a: core field @@ -7885,7 +7882,7 @@ slots: title: climate environment examples: - value: tropical climate;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - climate environment is_a: core field @@ -7906,7 +7903,7 @@ slots: title: collection date examples: - value: 2018-05-11T10:00:00+01:00; 2018-05-11 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - collection date is_a: environment field @@ -7929,7 +7926,7 @@ slots: title: conductivity examples: - value: 10 milliSiemens per centimeter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - conductivity is_a: core field @@ -7949,7 +7946,7 @@ slots: title: cooling system identifier examples: - value: '12345' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - cooling system identifier is_a: core field @@ -7969,7 +7966,7 @@ slots: title: history/crop rotation examples: - value: yes;R2/2017-01-01/2018-12-31/P6M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - history/crop rotation is_a: core field @@ -7993,7 +7990,7 @@ slots: title: culture rooting medium examples: - value: http://himedialabs.com/TD/PT158.pdf - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - culture rooting medium is_a: core field @@ -8014,7 +8011,7 @@ slots: title: current land use examples: - value: conifers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - current land use is_a: core field @@ -8035,7 +8032,7 @@ slots: title: current vegetation examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - current vegetation is_a: core field @@ -8056,7 +8053,7 @@ slots: title: current vegetation method examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - current vegetation method is_a: core field @@ -8077,7 +8074,7 @@ slots: title: date last rain examples: - value: 2018-05-11:T14:30Z - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - date last rain is_a: core field @@ -8101,7 +8098,7 @@ slots: title: density examples: - value: 1000 kilogram per cubic meter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - density is_a: core field @@ -8122,7 +8119,7 @@ slots: title: depositional environment examples: - value: Continental - Alluvial - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - depositional environment is_a: core field @@ -8141,7 +8138,7 @@ slots: title: depth examples: - value: 10 meter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - depth is_a: environment field @@ -8165,7 +8162,7 @@ slots: title: dew point examples: - value: 22 degree Celsius - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - dew point is_a: core field @@ -8189,7 +8186,7 @@ slots: title: diether lipids examples: - value: 0.2 nanogram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - diether lipids is_a: core field @@ -8214,7 +8211,7 @@ slots: title: dissolved carbon dioxide examples: - value: 5 milligram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - dissolved carbon dioxide is_a: core field @@ -8237,7 +8234,7 @@ slots: title: dissolved hydrogen examples: - value: 0.3 micromole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - dissolved hydrogen is_a: core field @@ -8261,7 +8258,7 @@ slots: title: dissolved inorganic carbon examples: - value: 2059 micromole per kilogram - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - dissolved inorganic carbon is_a: core field @@ -8284,7 +8281,7 @@ slots: title: dissolved inorganic nitrogen examples: - value: 761 micromole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - dissolved inorganic nitrogen is_a: core field @@ -8307,7 +8304,7 @@ slots: title: dissolved inorganic phosphorus examples: - value: 56.5 micromole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - dissolved inorganic phosphorus is_a: core field @@ -8330,7 +8327,7 @@ slots: title: dissolved iron examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - dissolved iron is_a: core field @@ -8354,7 +8351,7 @@ slots: title: dissolved organic carbon examples: - value: 197 micromole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - dissolved organic carbon is_a: core field @@ -8378,7 +8375,7 @@ slots: title: dissolved organic nitrogen examples: - value: 0.05 micromole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - dissolved organic nitrogen is_a: core field @@ -8401,7 +8398,7 @@ slots: title: dissolved oxygen examples: - value: 175 micromole per kilogram - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - dissolved oxygen is_a: core field @@ -8425,7 +8422,7 @@ slots: title: dissolved oxygen in fluids examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - dissolved oxygen in fluids is_a: core field @@ -8445,7 +8442,7 @@ slots: title: door type, composite examples: - value: revolving - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - door type, composite is_a: core field @@ -8465,7 +8462,7 @@ slots: title: door condition examples: - value: new - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - door condition is_a: core field @@ -8485,7 +8482,7 @@ slots: title: door direction of opening examples: - value: inward - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - door direction of opening is_a: core field @@ -8505,7 +8502,7 @@ slots: title: door location examples: - value: north - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - door location is_a: core field @@ -8525,7 +8522,7 @@ slots: title: door material examples: - value: wood - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - door material is_a: core field @@ -8545,7 +8542,7 @@ slots: title: door movement examples: - value: swinging - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - door movement is_a: core field @@ -8568,7 +8565,7 @@ slots: title: door area or size examples: - value: 2.5 square meter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - door area or size is_a: core field @@ -8588,7 +8585,7 @@ slots: title: door type examples: - value: wooden - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - door type is_a: core field @@ -8608,7 +8605,7 @@ slots: title: door type, metal examples: - value: hollow - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - door type, metal is_a: core field @@ -8628,7 +8625,7 @@ slots: title: door type, wood examples: - value: battened - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - door type, wood is_a: core field @@ -8648,7 +8645,7 @@ slots: title: door signs of water/mold examples: - value: presence of mold visible - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - door signs of water/mold is_a: core field @@ -8674,7 +8671,7 @@ slots: title: downward PAR examples: - value: 28.71 microEinstein per square meter per second - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - downward PAR is_a: core field @@ -8694,7 +8691,7 @@ slots: title: drainage classification examples: - value: well - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - drainage classification is_a: core field @@ -8715,7 +8712,7 @@ slots: title: drawings examples: - value: sketch - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - drawings is_a: core field @@ -8738,7 +8735,7 @@ slots: title: efficiency percent examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - efficiency percent is_a: core field @@ -8758,7 +8755,7 @@ slots: title: elevation examples: - value: 100 meter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - elevation is_a: environment field @@ -8778,7 +8775,7 @@ slots: title: elevator count examples: - value: '2' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - elevator count is_a: core field @@ -8803,7 +8800,7 @@ slots: title: emulsions examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - emulsions is_a: core field @@ -8828,7 +8825,7 @@ slots: examples: - value: oceanic epipelagic zone biome [ENVO:01000033] for annotating a water sample from the photic zone in middle of the Atlantic Ocean - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - broad-scale environmental context is_a: environment field @@ -8855,7 +8852,7 @@ slots: various vegetation layers in a forest consider: canopy [ENVO:00000047]|herb and fern layer [ENVO:01000337]|litter layer [ENVO:01000338]|understory [01000335]|shrub layer [ENVO:01000336].' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - local environmental context is_a: environment field @@ -8882,7 +8879,7 @@ slots: - value: 'soil [ENVO:00001998]; Annotating a fish swimming in the upper 100 m of the Atlantic Ocean, consider: ocean water [ENVO:00002151]. Example: Annotating a duck on a pond consider: pond water [ENVO:00002228]|air [ENVO_00002005]' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - environmental medium is_a: environment field @@ -8903,7 +8900,7 @@ slots: title: escalator count examples: - value: '4' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - escalator count is_a: core field @@ -8926,7 +8923,7 @@ slots: title: ethylbenzene examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - ethylbenzene is_a: core field @@ -8949,7 +8946,7 @@ slots: title: exposed ductwork examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - exposed ductwork is_a: core field @@ -8969,7 +8966,7 @@ slots: title: exposed pipes examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - exposed pipes is_a: core field @@ -8991,7 +8988,7 @@ slots: title: experimental factor examples: - value: time series design [EFO:EFO_0001779] - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - experimental factor is_a: investigation field @@ -9012,7 +9009,7 @@ slots: title: exterior door count examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - exterior door count is_a: core field @@ -9032,7 +9029,7 @@ slots: title: orientations of exterior wall examples: - value: northwest - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - orientations of exterior wall is_a: core field @@ -9052,7 +9049,7 @@ slots: title: orientations of exterior window examples: - value: southwest - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - orientations of exterior window is_a: core field @@ -9072,7 +9069,7 @@ slots: title: history/extreme events examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - history/extreme events is_a: core field @@ -9093,7 +9090,7 @@ slots: title: soil_taxonomic/FAO classification examples: - value: Luvisols - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - soil_taxonomic/FAO classification is_a: core field @@ -9120,7 +9117,7 @@ slots: title: fertilizer regimen examples: - value: urea;0.6 milligram per liter;R2/2018-05-11:T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - fertilizer regimen is_a: core field @@ -9141,7 +9138,7 @@ slots: title: field name examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - field name is_a: core field @@ -9162,7 +9159,7 @@ slots: title: filter type examples: - value: HEPA - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - filter type is_a: core field @@ -9182,7 +9179,7 @@ slots: title: history/fire examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - history/fire is_a: core field @@ -9202,7 +9199,7 @@ slots: title: fireplace type examples: - value: wood burning - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - fireplace type is_a: core field @@ -9223,7 +9220,7 @@ slots: title: history/flooding examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - history/flooding is_a: core field @@ -9246,7 +9243,7 @@ slots: title: floor age examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - floor age is_a: core field @@ -9269,7 +9266,7 @@ slots: title: floor area examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - floor area is_a: core field @@ -9290,7 +9287,7 @@ slots: title: floor condition examples: - value: new - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - floor condition is_a: core field @@ -9311,7 +9308,7 @@ slots: title: floor count examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - floor count is_a: core field @@ -9331,7 +9328,7 @@ slots: title: floor finish material examples: - value: carpet - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - floor finish material is_a: core field @@ -9352,7 +9349,7 @@ slots: title: floor structure examples: - value: concrete - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - floor structure is_a: core field @@ -9375,7 +9372,7 @@ slots: title: floor thermal mass examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - floor thermal mass is_a: core field @@ -9395,7 +9392,7 @@ slots: title: floor signs of water/mold examples: - value: ceiling discoloration - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - floor signs of water/mold is_a: core field @@ -9418,7 +9415,7 @@ slots: title: fluorescence examples: - value: 2.5 volts - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - fluorescence is_a: core field @@ -9439,7 +9436,7 @@ slots: title: frequency of cleaning examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - frequency of cleaning is_a: core field @@ -9459,7 +9456,7 @@ slots: title: frequency of cooking examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - frequency of cooking is_a: core field @@ -9485,7 +9482,7 @@ slots: title: fungicide regimen examples: - value: bifonazole;1 mole per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - fungicide regimen is_a: core field @@ -9506,7 +9503,7 @@ slots: title: furniture examples: - value: chair - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - furniture is_a: core field @@ -9532,7 +9529,7 @@ slots: title: gaseous environment examples: - value: nitric oxide;0.5 micromole per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - gaseous environment is_a: core field @@ -9557,7 +9554,7 @@ slots: title: gaseous substances examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - gaseous substances is_a: core field @@ -9578,7 +9575,7 @@ slots: title: gender of restroom examples: - value: male - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - gender of restroom is_a: core field @@ -9601,7 +9598,7 @@ slots: title: genetic modification examples: - value: aox1A transgenic - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - genetic modification is_a: core field @@ -9623,7 +9620,7 @@ slots: title: geographic location (country and/or sea,region) examples: - value: 'USA: Maryland, Bethesda' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - geographic location (country and/or sea,region) is_a: environment field @@ -9647,7 +9644,7 @@ slots: title: glucosidase activity examples: - value: 5 mol per liter per hour - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - glucosidase activity is_a: core field @@ -9668,7 +9665,7 @@ slots: title: gravidity examples: - value: yes;due date:2018-05-11 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - gravidity is_a: core field @@ -9696,7 +9693,7 @@ slots: title: gravity examples: - value: 12 g;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - gravity is_a: core field @@ -9719,7 +9716,7 @@ slots: title: growth facility examples: - value: Growth chamber [CO_715:0000189] - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - growth facility is_a: core field @@ -9740,7 +9737,7 @@ slots: title: growth habit examples: - value: spreading - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - growth habit is_a: core field @@ -9767,7 +9764,7 @@ slots: title: growth hormone regimen examples: - value: abscisic acid;0.5 milligram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - growth hormone regimen is_a: core field @@ -9788,7 +9785,7 @@ slots: title: hallway/corridor count examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - hallway/corridor count is_a: core field @@ -9808,7 +9805,7 @@ slots: title: handidness examples: - value: right handedness - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - handidness is_a: core field @@ -9829,7 +9826,7 @@ slots: title: hydrocarbon type produced examples: - value: Gas - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - hydrocarbon type produced is_a: core field @@ -9855,7 +9852,7 @@ slots: title: hydrocarbon resource type examples: - value: Oil Sand - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - hydrocarbon resource type is_a: core field @@ -9879,7 +9876,7 @@ slots: title: formation water salinity examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - formation water salinity is_a: core field @@ -9900,7 +9897,7 @@ slots: title: hydrocarbon resource geological age examples: - value: Silurian - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - hydrocarbon resource geological age is_a: core field @@ -9923,7 +9920,7 @@ slots: title: hydrocarbon resource original pressure examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - hydrocarbon resource original pressure is_a: core field @@ -9947,7 +9944,7 @@ slots: title: hydrocarbon resource original temperature examples: - value: 150-295 degree Celsius - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - hydrocarbon resource original temperature is_a: core field @@ -9968,7 +9965,7 @@ slots: title: heating and cooling system type examples: - value: heat pump - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - heating and cooling system type is_a: core field @@ -9988,7 +9985,7 @@ slots: title: heating delivery locations examples: - value: north - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - heating delivery locations is_a: core field @@ -10008,7 +10005,7 @@ slots: title: heating system delivery method examples: - value: radiant - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - heating system delivery method is_a: core field @@ -10029,7 +10026,7 @@ slots: title: heating system identifier examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - heating system identifier is_a: core field @@ -10053,7 +10050,7 @@ slots: title: extreme_unusual_properties/heavy metals examples: - value: mercury;0.09 micrograms per gram - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - extreme_unusual_properties/heavy metals is_a: core field @@ -10074,7 +10071,7 @@ slots: title: extreme_unusual_properties/heavy metals method examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - extreme_unusual_properties/heavy metals method is_a: core field @@ -10098,7 +10095,7 @@ slots: title: height carpet fiber mat examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - height carpet fiber mat is_a: core field @@ -10125,7 +10122,7 @@ slots: title: herbicide regimen examples: - value: atrazine;10 milligram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - herbicide regimen is_a: core field @@ -10146,7 +10143,7 @@ slots: title: soil horizon method examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - soil horizon method is_a: core field @@ -10171,7 +10168,7 @@ slots: title: host age examples: - value: 10 days - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host age is_a: core field @@ -10191,7 +10188,7 @@ slots: title: host body habitat examples: - value: nasopharynx - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host body habitat is_a: core field @@ -10215,7 +10212,7 @@ slots: title: host body product examples: - value: Portion of mucus [fma66938] - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host body product is_a: core field @@ -10239,7 +10236,7 @@ slots: title: host body site examples: - value: gill [UBERON:0002535] - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host body site is_a: core field @@ -10263,7 +10260,7 @@ slots: title: host body temperature examples: - value: 15 degree Celsius - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host body temperature is_a: core field @@ -10283,7 +10280,7 @@ slots: title: host color examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host color is_a: core field @@ -10304,7 +10301,7 @@ slots: title: host common name examples: - value: human - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host common name is_a: core field @@ -10326,7 +10323,7 @@ slots: title: host diet examples: - value: herbivore - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host diet is_a: core field @@ -10350,7 +10347,7 @@ slots: title: host dry mass examples: - value: 500 gram - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host dry mass is_a: core field @@ -10371,7 +10368,7 @@ slots: title: host family relationship examples: - value: offspring;Mussel25 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host family relationship is_a: core field @@ -10392,7 +10389,7 @@ slots: title: host genotype examples: - value: C57BL/6 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host genotype is_a: core field @@ -10413,7 +10410,7 @@ slots: title: host growth conditions examples: - value: https://academic.oup.com/icesjms/article/68/2/349/617247 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host growth conditions is_a: core field @@ -10437,7 +10434,7 @@ slots: title: host height examples: - value: 0.1 meter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host height is_a: core field @@ -10458,7 +10455,7 @@ slots: title: host last meal examples: - value: corn feed;P2H - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host last meal is_a: core field @@ -10482,7 +10479,7 @@ slots: title: host length examples: - value: 1 meter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host length is_a: core field @@ -10502,7 +10499,7 @@ slots: title: host life stage examples: - value: adult - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host life stage is_a: core field @@ -10525,7 +10522,7 @@ slots: title: host phenotype examples: - value: elongated [PATO:0001154] - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host phenotype is_a: core field @@ -10546,7 +10543,7 @@ slots: title: host sex examples: - value: non-binary - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host sex is_a: core field @@ -10566,7 +10563,7 @@ slots: title: host shape examples: - value: round - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host shape is_a: core field @@ -10587,7 +10584,7 @@ slots: title: host subject id examples: - value: MPI123 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host subject id is_a: core field @@ -10613,7 +10610,7 @@ slots: title: host subspecific genetic lineage examples: - value: 'serovar:Newport, variety:glabrum, cultivar: Red Delicious' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host subspecific genetic lineage is_a: core field @@ -10634,7 +10631,7 @@ slots: title: host substrate examples: - value: rock - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host substrate is_a: core field @@ -10656,7 +10653,7 @@ slots: title: observed host symbionts examples: - value: flukeworms - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - observed host symbionts is_a: core field @@ -10677,7 +10674,7 @@ slots: title: host taxid comments: - Homo sapiens [NCBITaxon:9606] would be a reasonable has_raw_value - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host taxid is_a: core field @@ -10700,7 +10697,7 @@ slots: title: host total mass examples: - value: 2500 gram - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host total mass is_a: core field @@ -10723,7 +10720,7 @@ slots: title: host wet mass examples: - value: 1500 gram - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host wet mass is_a: core field @@ -10746,7 +10743,7 @@ slots: title: humidity examples: - value: 25 gram per cubic meter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - humidity is_a: core field @@ -10773,7 +10770,7 @@ slots: title: humidity regimen examples: - value: 25 gram per cubic meter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - humidity regimen is_a: core field @@ -10795,7 +10792,7 @@ slots: title: indoor space examples: - value: foyer - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - indoor space is_a: core field @@ -10815,7 +10812,7 @@ slots: title: indoor surface examples: - value: wall - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - indoor surface is_a: core field @@ -10839,7 +10836,7 @@ slots: title: industrial effluent percent examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - industrial effluent percent is_a: core field @@ -10863,7 +10860,7 @@ slots: title: inorganic particles examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - inorganic particles is_a: core field @@ -10887,7 +10884,7 @@ slots: title: inside lux light examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - inside lux light is_a: core field @@ -10908,7 +10905,7 @@ slots: title: interior wall condition examples: - value: damaged - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - interior wall condition is_a: core field @@ -10929,7 +10926,7 @@ slots: title: injection water breakthrough date of specific well examples: - value: '2018-05-11' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - injection water breakthrough date of specific well is_a: core field @@ -10953,7 +10950,7 @@ slots: title: injection water fraction examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - injection water fraction is_a: core field @@ -10973,7 +10970,7 @@ slots: title: last time swept/mopped/vacuumed examples: - value: 2018-05-11:T14:30Z - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - last time swept/mopped/vacuumed is_a: core field @@ -10991,7 +10988,7 @@ slots: title: geographic location (latitude and longitude) examples: - value: 50.586825 6.408977 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - geographic location (latitude and longitude) is_a: environment field @@ -11015,7 +11012,7 @@ slots: title: light intensity examples: - value: 0.3 lux - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - light intensity is_a: core field @@ -11039,7 +11036,7 @@ slots: title: light regimen examples: - value: incandescant light;10 lux;450 nanometer - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - light regimen is_a: core field @@ -11063,7 +11060,7 @@ slots: title: light type examples: - value: desk lamp - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - light type is_a: core field @@ -11083,7 +11080,7 @@ slots: title: links to additional analysis examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - links to additional analysis is_a: core field @@ -11104,7 +11101,7 @@ slots: title: link to classification information examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - link to classification information is_a: core field @@ -11125,7 +11122,7 @@ slots: title: link to climate information examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - link to climate information is_a: core field @@ -11147,7 +11144,7 @@ slots: title: lithology examples: - value: Volcanic - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - lithology is_a: core field @@ -11167,7 +11164,7 @@ slots: title: soil_taxonomic/local classification examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - soil_taxonomic/local classification is_a: core field @@ -11188,7 +11185,7 @@ slots: title: soil_taxonomic/local classification method examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - soil_taxonomic/local classification method is_a: core field @@ -11213,7 +11210,7 @@ slots: title: magnesium examples: - value: 52.8 micromole per kilogram - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - magnesium is_a: core field @@ -11233,7 +11230,7 @@ slots: title: maximum occupancy examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - maximum occupancy is_a: core field @@ -11256,7 +11253,7 @@ slots: title: mean friction velocity examples: - value: 0.5 meter per second - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - mean friction velocity is_a: core field @@ -11279,7 +11276,7 @@ slots: title: mean peak friction velocity examples: - value: 1 meter per second - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - mean peak friction velocity is_a: core field @@ -11299,7 +11296,7 @@ slots: title: mechanical structure examples: - value: elevator - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - mechanical structure is_a: core field @@ -11320,7 +11317,7 @@ slots: title: mechanical damage examples: - value: pruning;bark - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - mechanical damage is_a: core field @@ -11344,7 +11341,7 @@ slots: title: methane examples: - value: 1800 parts per billion - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - methane is_a: core field @@ -11364,7 +11361,7 @@ slots: title: microbial biomass method examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - microbial biomass method is_a: core field @@ -11390,7 +11387,7 @@ slots: title: microbial biomass examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - microbial biomass is_a: core field @@ -11418,7 +11415,7 @@ slots: title: mineral nutrient regimen examples: - value: potassium;15 gram;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - mineral nutrient regimen is_a: core field @@ -11440,7 +11437,7 @@ slots: title: miscellaneous parameter examples: - value: Bicarbonate ion concentration;2075 micromole per kilogram - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - miscellaneous parameter is_a: core field @@ -11464,7 +11461,7 @@ slots: title: n-alkanes examples: - value: n-hexadecane;100 milligram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - n-alkanes is_a: core field @@ -11488,7 +11485,7 @@ slots: title: nitrate examples: - value: 65 micromole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - nitrate is_a: core field @@ -11511,7 +11508,7 @@ slots: title: nitrite examples: - value: 0.5 micromole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - nitrite is_a: core field @@ -11534,7 +11531,7 @@ slots: title: nitrogen examples: - value: 4.2 micromole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - nitrogen is_a: core field @@ -11562,7 +11559,7 @@ slots: title: non-mineral nutrient regimen examples: - value: carbon dioxide;10 mole per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - non-mineral nutrient regimen is_a: core field @@ -11582,7 +11579,7 @@ slots: title: nucleic acid amplification examples: - value: https://phylogenomics.me/protocols/16s-pcr-protocol/ - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - nucleic acid amplification is_a: sequencing field @@ -11602,7 +11599,7 @@ slots: title: nucleic acid extraction examples: - value: https://mobio.com/media/wysiwyg/pdfs/protocols/12888.pdf - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - nucleic acid extraction is_a: sequencing field @@ -11623,7 +11620,7 @@ slots: title: number of pets examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - number of pets is_a: core field @@ -11643,7 +11640,7 @@ slots: title: number of houseplants examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - number of houseplants is_a: core field @@ -11663,7 +11660,7 @@ slots: title: number of residents examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - number of residents is_a: core field @@ -11683,7 +11680,7 @@ slots: title: occupant density at sampling examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - occupant density at sampling is_a: core field @@ -11703,7 +11700,7 @@ slots: title: occupancy documentation examples: - value: estimate - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - occupancy documentation is_a: core field @@ -11723,7 +11720,7 @@ slots: title: occupancy at sampling examples: - value: '10' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - occupancy at sampling is_a: core field @@ -11746,7 +11743,7 @@ slots: title: organic carbon examples: - value: 1.5 microgram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - organic carbon is_a: core field @@ -11775,7 +11772,7 @@ slots: title: organism count qPCR information examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - organism count qPCR information is_a: core field @@ -11800,7 +11797,7 @@ slots: title: organic matter examples: - value: 1.75 milligram per cubic meter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - organic matter is_a: core field @@ -11823,7 +11820,7 @@ slots: title: organic nitrogen examples: - value: 4 micromole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - organic nitrogen is_a: core field @@ -11847,7 +11844,7 @@ slots: title: organic particles examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - organic particles is_a: core field @@ -11875,7 +11872,7 @@ slots: title: organism count examples: - value: total prokaryotes;3.5e7 cells per milliliter;qPCR - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - organism count is_a: core field @@ -11898,7 +11895,7 @@ slots: title: oil water contact depth examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - oil water contact depth is_a: core field @@ -11918,7 +11915,7 @@ slots: title: oxygenation status of sample examples: - value: aerobic - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - oxygenation status of sample is_a: core field @@ -11941,7 +11938,7 @@ slots: title: oxygen examples: - value: 600 parts per million - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - oxygen is_a: core field @@ -11964,7 +11961,7 @@ slots: title: particulate organic carbon examples: - value: 1.92 micromole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - particulate organic carbon is_a: core field @@ -11987,7 +11984,7 @@ slots: title: particulate organic nitrogen examples: - value: 0.3 micromole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - particulate organic nitrogen is_a: core field @@ -12012,7 +12009,7 @@ slots: title: particle classification examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - particle classification is_a: core field @@ -12032,7 +12029,7 @@ slots: title: pcr conditions examples: - value: initial denaturation:94_3;annealing:50_1;elongation:72_1.5;final elongation:72_10;35 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - pcr conditions is_a: sequencing field @@ -12054,7 +12051,7 @@ slots: title: pcr primers examples: - value: FWD:GTGCCAGCMGCCGCGGTAA;REV:GGACTACHVGGGTWTCTAAT - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - pcr primers is_a: sequencing field @@ -12079,7 +12076,7 @@ slots: title: permeability examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - permeability is_a: core field @@ -12103,7 +12100,7 @@ slots: title: perturbation examples: - value: antibiotic addition;R2/2018-05-11T14:30Z/2018-05-11T19:30Z/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - perturbation is_a: core field @@ -12131,7 +12128,7 @@ slots: title: pesticide regimen examples: - value: pyrethrum;0.6 milligram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - pesticide regimen is_a: core field @@ -12155,7 +12152,7 @@ slots: title: petroleum hydrocarbon examples: - value: 0.05 micromole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - petroleum hydrocarbon is_a: core field @@ -12176,7 +12173,7 @@ slots: title: pH examples: - value: '7.2' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - pH is_a: core field @@ -12196,7 +12193,7 @@ slots: title: pH method examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - pH method is_a: core field @@ -12220,7 +12217,7 @@ slots: title: pH regimen examples: - value: 7.6;R2/2018-05-11:T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - pH regimen is_a: core field @@ -12244,7 +12241,7 @@ slots: title: phaeopigments examples: - value: 2.5 milligram per cubic meter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - phaeopigments is_a: core field @@ -12268,7 +12265,7 @@ slots: title: phosphate examples: - value: 0.7 micromole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - phosphate is_a: core field @@ -12291,7 +12288,7 @@ slots: title: phospholipid fatty acid examples: - value: 2.98 milligram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - phospholipid fatty acid is_a: core field @@ -12315,7 +12312,7 @@ slots: title: photon flux examples: - value: 3.926 micromole photons per second per square meter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - photon flux is_a: core field @@ -12339,7 +12336,7 @@ slots: title: plant growth medium examples: - value: hydroponic plant culture media [EO:0007067] - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - plant growth medium is_a: core field @@ -12359,7 +12356,7 @@ slots: title: plant product examples: - value: xylem sap [PO:0025539] - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - plant product is_a: core field @@ -12381,7 +12378,7 @@ slots: title: plant sex examples: - value: Hermaphroditic - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - plant sex is_a: core field @@ -12404,7 +12401,7 @@ slots: title: plant structure examples: - value: epidermis [PO:0005679] - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - plant structure is_a: core field @@ -12430,7 +12427,7 @@ slots: title: pollutants examples: - value: lead;0.15 microgram per cubic meter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - pollutants is_a: core field @@ -12452,7 +12449,7 @@ slots: title: pooling of DNA extracts (if done) examples: - value: yes;5 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - pooling of DNA extracts (if done) is_a: core field @@ -12477,7 +12474,7 @@ slots: title: porosity examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - porosity is_a: core field @@ -12501,7 +12498,7 @@ slots: title: potassium examples: - value: 463 milligram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - potassium is_a: core field @@ -12527,7 +12524,7 @@ slots: title: pour point examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - pour point is_a: core field @@ -12548,7 +12545,7 @@ slots: title: pre-treatment examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - pre-treatment is_a: core field @@ -12570,7 +12567,7 @@ slots: title: presence of pets, animals, or insects examples: - value: cat;5 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - presence of pets, animals, or insects is_a: core field @@ -12594,7 +12591,7 @@ slots: title: pressure examples: - value: 50 atmosphere - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - pressure is_a: core field @@ -12614,7 +12611,7 @@ slots: title: history/previous land use method examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - history/previous land use method is_a: core field @@ -12635,7 +12632,7 @@ slots: title: history/previous land use examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - history/previous land use is_a: core field @@ -12660,7 +12657,7 @@ slots: title: primary production examples: - value: 100 milligram per cubic meter per day - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - primary production is_a: core field @@ -12682,7 +12679,7 @@ slots: title: primary treatment examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - primary treatment is_a: core field @@ -12706,7 +12703,7 @@ slots: title: production rate examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - production rate is_a: core field @@ -12726,7 +12723,7 @@ slots: title: production start date examples: - value: '2018-05-11' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - production start date is_a: core field @@ -12747,7 +12744,7 @@ slots: title: profile position examples: - value: summit - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - profile position is_a: core field @@ -12767,7 +12764,7 @@ slots: title: quadrant position examples: - value: West side - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - quadrant position is_a: core field @@ -12794,7 +12791,7 @@ slots: title: radiation regimen examples: - value: gamma radiation;60 gray;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - radiation regimen is_a: core field @@ -12821,7 +12818,7 @@ slots: title: rainfall regimen examples: - value: 15 millimeter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - rainfall regimen is_a: core field @@ -12844,7 +12841,7 @@ slots: title: reactor type examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - reactor type is_a: core field @@ -12869,7 +12866,7 @@ slots: title: redox potential examples: - value: 300 millivolt - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - redox potential is_a: core field @@ -12893,7 +12890,7 @@ slots: title: relative air humidity examples: - value: 80% - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - relative air humidity is_a: core field @@ -12916,7 +12913,7 @@ slots: title: outside relative humidity examples: - value: 12 per kilogram of air - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - outside relative humidity is_a: core field @@ -12936,7 +12933,7 @@ slots: title: relative sampling location examples: - value: center of car - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - relative sampling location is_a: core field @@ -12956,7 +12953,7 @@ slots: title: reservoir name examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - reservoir name is_a: core field @@ -12984,7 +12981,7 @@ slots: title: resins wt% examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - resins wt% is_a: core field @@ -13008,7 +13005,7 @@ slots: title: room air exchange rate examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - room air exchange rate is_a: core field @@ -13029,7 +13026,7 @@ slots: title: room architectural elements examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - room architectural elements is_a: core field @@ -13050,7 +13047,7 @@ slots: title: room condition examples: - value: new - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - room condition is_a: core field @@ -13070,7 +13067,7 @@ slots: title: rooms connected by a doorway examples: - value: office - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - rooms connected by a doorway is_a: core field @@ -13091,7 +13088,7 @@ slots: title: room count examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - room count is_a: core field @@ -13114,7 +13111,7 @@ slots: title: room dimensions examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - room dimensions is_a: core field @@ -13139,7 +13136,7 @@ slots: title: room door distance examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - room door distance is_a: core field @@ -13161,7 +13158,7 @@ slots: title: rooms that share a door with sampling room examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - rooms that share a door with sampling room is_a: core field @@ -13183,7 +13180,7 @@ slots: title: rooms that are on the same hallway examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - rooms that are on the same hallway is_a: core field @@ -13204,7 +13201,7 @@ slots: title: room location in building examples: - value: interior room - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - room location in building is_a: core field @@ -13225,7 +13222,7 @@ slots: title: room moisture damage or mold history examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - room moisture damage or mold history is_a: core field @@ -13248,7 +13245,7 @@ slots: title: room net area examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - room net area is_a: core field @@ -13269,7 +13266,7 @@ slots: title: room occupancy examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - room occupancy is_a: core field @@ -13290,7 +13287,7 @@ slots: title: room sampling position examples: - value: south corner - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - room sampling position is_a: core field @@ -13311,7 +13308,7 @@ slots: title: room type examples: - value: bathroom - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - room type is_a: core field @@ -13334,7 +13331,7 @@ slots: title: room volume examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - room volume is_a: core field @@ -13356,7 +13353,7 @@ slots: title: rooms that share a wall with sampling room examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - rooms that share a wall with sampling room is_a: core field @@ -13377,7 +13374,7 @@ slots: title: room window count examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - room window count is_a: core field @@ -13398,7 +13395,7 @@ slots: title: rooting conditions examples: - value: http://himedialabs.com/TD/PT158.pdf - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - rooting conditions is_a: core field @@ -13422,7 +13419,7 @@ slots: title: rooting medium carbon examples: - value: sucrose - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - rooting medium carbon is_a: core field @@ -13447,7 +13444,7 @@ slots: title: rooting medium macronutrients examples: - value: KH2PO4;170 milligram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - rooting medium macronutrients is_a: core field @@ -13472,7 +13469,7 @@ slots: title: rooting medium micronutrients examples: - value: H3BO3;6.2 milligram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - rooting medium micronutrients is_a: core field @@ -13493,7 +13490,7 @@ slots: title: rooting medium pH examples: - value: '7.5' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - rooting medium pH is_a: core field @@ -13517,7 +13514,7 @@ slots: title: rooting medium regulators examples: - value: abscisic acid;0.75 milligram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - rooting medium regulators is_a: core field @@ -13539,7 +13536,7 @@ slots: title: rooting medium solidifier examples: - value: agar - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - rooting medium solidifier is_a: core field @@ -13565,7 +13562,7 @@ slots: title: rooting medium organic supplements examples: - value: nicotinic acid;0.5 milligram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - rooting medium organic supplements is_a: core field @@ -13594,7 +13591,7 @@ slots: title: salinity examples: - value: 25 practical salinity unit - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - salinity is_a: core field @@ -13614,7 +13611,7 @@ slots: title: salinity method examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - salinity method is_a: core field @@ -13642,7 +13639,7 @@ slots: title: salt regimen examples: - value: NaCl;5 gram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - salt regimen is_a: core field @@ -13663,7 +13660,7 @@ slots: title: sample capture status examples: - value: farm sample - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample capture status is_a: core field @@ -13682,7 +13679,7 @@ slots: title: sample collection device examples: - value: swab, biopsy, niskin bottle, push core, drag swab [GENEPIO:0002713] - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample collection device is_a: nucleic acid sequence source field @@ -13700,7 +13697,7 @@ slots: title: sample collection method examples: - value: swabbing - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample collection method is_a: nucleic acid sequence source field @@ -13723,7 +13720,7 @@ slots: title: sample collection point examples: - value: well - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample collection point is_a: core field @@ -13744,7 +13741,7 @@ slots: title: sample disease stage examples: - value: infection - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample disease stage is_a: core field @@ -13764,7 +13761,7 @@ slots: title: sampling floor examples: - value: 4th floor - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sampling floor is_a: core field @@ -13793,7 +13790,7 @@ slots: title: corrosion rate at sample location examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - corrosion rate at sample location is_a: core field @@ -13813,7 +13810,7 @@ slots: title: sample material processing examples: - value: filtering of seawater, storing samples in ethanol - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample material processing is_a: nucleic acid sequence source field @@ -13842,7 +13839,7 @@ slots: title: sample measured depth examples: - value: 1534 meter;MSL - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample measured depth is_a: core field @@ -13865,7 +13862,7 @@ slots: title: sample name examples: - value: ISDsoil1 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample name is_a: investigation field @@ -13890,7 +13887,7 @@ slots: title: preservative added to sample examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - preservative added to sample is_a: core field @@ -13912,7 +13909,7 @@ slots: title: sampling room ID or name examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sampling room ID or name is_a: core field @@ -13933,7 +13930,7 @@ slots: title: amount or size of sample collected examples: - value: 5 liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - amount or size of sample collected is_a: nucleic acid sequence source field @@ -13956,7 +13953,7 @@ slots: title: sample size sorting method examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample size sorting method is_a: core field @@ -13977,7 +13974,7 @@ slots: title: sample storage duration examples: - value: P1Y6M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample storage duration is_a: core field @@ -13998,7 +13995,7 @@ slots: title: sample storage location examples: - value: Freezer no:5 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample storage location is_a: core field @@ -14022,7 +14019,7 @@ slots: title: sample storage temperature examples: - value: -80 degree Celsius - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample storage temperature is_a: core field @@ -14044,7 +14041,7 @@ slots: title: sample subtype examples: - value: biofilm - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample subtype is_a: core field @@ -14063,7 +14060,7 @@ slots: title: Taxonomy ID of DNA sample comments: - coal metagenome [NCBITaxon:1260732] would be a reasonable has_raw_value - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - Taxonomy ID of DNA sample is_a: investigation field @@ -14086,7 +14083,7 @@ slots: title: sampling time outside examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sampling time outside is_a: core field @@ -14110,7 +14107,7 @@ slots: title: sample transport conditions examples: - value: 5 days;-20 degree Celsius - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample transport conditions is_a: core field @@ -14136,7 +14133,7 @@ slots: title: sample true vertical depth subsea examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample true vertical depth subsea is_a: core field @@ -14162,7 +14159,7 @@ slots: title: sample type examples: - value: built environment sample [GENEPIO:0001248] - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample type is_a: core field @@ -14185,7 +14182,7 @@ slots: title: sample volume or weight for DNA extraction examples: - value: 1500 milliliter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample volume or weight for DNA extraction is_a: nucleic acid sequence source field @@ -14205,7 +14202,7 @@ slots: title: sampling day weather examples: - value: foggy - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sampling day weather is_a: core field @@ -14225,7 +14222,7 @@ slots: title: sample well name examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample well name is_a: core field @@ -14253,7 +14250,7 @@ slots: title: saturates wt% examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - saturates wt% is_a: core field @@ -14276,7 +14273,7 @@ slots: title: season examples: - value: autumn [NCIT:C94733] - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - season is_a: core field @@ -14300,7 +14297,7 @@ slots: title: seasonal environment examples: - value: rainy;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - seasonal environment is_a: core field @@ -14325,7 +14322,7 @@ slots: title: mean seasonal precipitation examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - mean seasonal precipitation is_a: core field @@ -14348,7 +14345,7 @@ slots: title: mean seasonal temperature examples: - value: 18 degree Celsius - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - mean seasonal temperature is_a: core field @@ -14368,7 +14365,7 @@ slots: title: seasonal use examples: - value: Winter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - seasonal use is_a: core field @@ -14389,7 +14386,7 @@ slots: title: secondary treatment examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - secondary treatment is_a: core field @@ -14410,7 +14407,7 @@ slots: title: sediment type examples: - value: biogenous - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sediment type is_a: core field @@ -14428,7 +14425,7 @@ slots: title: sequencing method examples: - value: 454 Genome Sequencer FLX [OBI:0000702] - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sequencing method is_a: sequencing field @@ -14449,7 +14446,7 @@ slots: title: sequence quality check examples: - value: none - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sequence quality check is_a: sequencing field @@ -14470,7 +14467,7 @@ slots: title: sewage type examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sewage type is_a: core field @@ -14491,7 +14488,7 @@ slots: title: shading device signs of water/mold examples: - value: no presence of mold visible - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - shading device signs of water/mold is_a: core field @@ -14512,7 +14509,7 @@ slots: title: shading device condition examples: - value: new - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - shading device condition is_a: core field @@ -14532,7 +14529,7 @@ slots: title: shading device location examples: - value: exterior - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - shading device location is_a: core field @@ -14553,7 +14550,7 @@ slots: title: shading device material examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - shading device material is_a: core field @@ -14574,7 +14571,7 @@ slots: title: shading device type examples: - value: slatted aluminum awning - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - shading device type is_a: core field @@ -14595,7 +14592,7 @@ slots: title: composite design/sieving examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - composite design/sieving is_a: core field @@ -14619,7 +14616,7 @@ slots: title: silicate examples: - value: 0.05 micromole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - silicate is_a: core field @@ -14636,7 +14633,7 @@ slots: title: size fraction selected examples: - value: 0-0.22 micrometer - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - size fraction selected is_a: nucleic acid sequence source field @@ -14661,7 +14658,7 @@ slots: title: size-fraction lower threshold examples: - value: 0.2 micrometer - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - size-fraction lower threshold is_a: core field @@ -14685,7 +14682,7 @@ slots: title: size-fraction upper threshold examples: - value: 20 micrometer - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - size-fraction upper threshold is_a: core field @@ -14711,7 +14708,7 @@ slots: title: slope aspect examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - slope aspect is_a: core field @@ -14736,7 +14733,7 @@ slots: title: slope gradient examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - slope gradient is_a: core field @@ -14759,7 +14756,7 @@ slots: title: sludge retention time examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sludge retention time is_a: core field @@ -14782,7 +14779,7 @@ slots: title: sodium examples: - value: 10.5 milligram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sodium is_a: core field @@ -14804,7 +14801,7 @@ slots: title: soil horizon examples: - value: A horizon - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - soil horizon is_a: core field @@ -14827,7 +14824,7 @@ slots: title: soil texture measurement examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - soil texture measurement is_a: core field @@ -14847,7 +14844,7 @@ slots: title: soil texture method examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - soil texture method is_a: core field @@ -14870,7 +14867,7 @@ slots: title: soil type examples: - value: plinthosol [ENVO:00002250] - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - soil type is_a: core field @@ -14892,7 +14889,7 @@ slots: title: soil type method examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - soil type method is_a: core field @@ -14918,7 +14915,7 @@ slots: title: solar irradiance examples: - value: 1.36 kilowatts per square meter per day - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - solar irradiance is_a: core field @@ -14942,7 +14939,7 @@ slots: title: soluble inorganic material examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - soluble inorganic material is_a: core field @@ -14967,7 +14964,7 @@ slots: title: soluble organic material examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - soluble organic material is_a: core field @@ -14991,7 +14988,7 @@ slots: title: soluble reactive phosphorus examples: - value: 0.1 milligram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - soluble reactive phosphorus is_a: core field @@ -15020,7 +15017,7 @@ slots: title: source material identifiers examples: - value: MPI012345 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - source material identifiers is_a: nucleic acid sequence source field @@ -15041,7 +15038,7 @@ slots: title: space typical state examples: - value: typically occupied - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - space typical state is_a: core field @@ -15063,7 +15060,7 @@ slots: title: specifications examples: - value: construction - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - specifications is_a: core field @@ -15088,7 +15085,7 @@ slots: title: specific humidity examples: - value: 15 per kilogram of air - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - specific humidity is_a: core field @@ -15109,7 +15106,7 @@ slots: title: source rock depositional environment examples: - value: Marine - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - source rock depositional environment is_a: core field @@ -15130,7 +15127,7 @@ slots: title: source rock geological age examples: - value: Silurian - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - source rock geological age is_a: core field @@ -15154,7 +15151,7 @@ slots: title: source rock kerogen type examples: - value: Type IV - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - source rock kerogen type is_a: core field @@ -15175,7 +15172,7 @@ slots: title: source rock lithology examples: - value: Coal - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - source rock lithology is_a: core field @@ -15198,7 +15195,7 @@ slots: title: standing water regimen examples: - value: standing water;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - standing water regimen is_a: core field @@ -15220,7 +15217,7 @@ slots: title: storage conditions examples: - value: -20 degree Celsius freezer;P2Y10D - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - storage conditions is_a: core field @@ -15242,7 +15239,7 @@ slots: title: substructure type examples: - value: basement - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - substructure type is_a: core field @@ -15265,7 +15262,7 @@ slots: title: sulfate examples: - value: 5 micromole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sulfate is_a: core field @@ -15288,7 +15285,7 @@ slots: title: sulfate in formation water examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sulfate in formation water is_a: core field @@ -15311,7 +15308,7 @@ slots: title: sulfide examples: - value: 2 micromole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sulfide is_a: core field @@ -15331,7 +15328,7 @@ slots: title: surface-air contaminant examples: - value: radon - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - surface-air contaminant is_a: core field @@ -15354,7 +15351,7 @@ slots: title: surface humidity examples: - value: 10% - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - surface humidity is_a: core field @@ -15374,7 +15371,7 @@ slots: title: surface material examples: - value: wood - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - surface material is_a: core field @@ -15397,7 +15394,7 @@ slots: title: surface moisture examples: - value: 0.01 gram per square meter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - surface moisture is_a: core field @@ -15417,7 +15414,7 @@ slots: title: surface moisture pH examples: - value: '7' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - surface moisture pH is_a: core field @@ -15440,7 +15437,7 @@ slots: title: surface temperature examples: - value: 15 degree Celsius - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - surface temperature is_a: core field @@ -15463,7 +15460,7 @@ slots: title: suspended particulate matter examples: - value: 0.5 milligram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - suspended particulate matter is_a: core field @@ -15488,7 +15485,7 @@ slots: title: suspended solids examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - suspended solids is_a: core field @@ -15515,7 +15512,7 @@ slots: title: total acid number examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - total acid number is_a: core field @@ -15532,7 +15529,7 @@ slots: title: target gene examples: - value: 16S rRNA, 18S rRNA, nif, amoA, rpo - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - target gene is_a: sequencing field @@ -15551,7 +15548,7 @@ slots: title: target subfragment examples: - value: V6, V9, ITS - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - target subfragment is_a: sequencing field @@ -15572,7 +15569,7 @@ slots: title: temperature examples: - value: 25 degree Celsius - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - temperature is_a: environment field @@ -15595,7 +15592,7 @@ slots: title: temperature outside house examples: - value: 5 degree Celsius - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - temperature outside house is_a: core field @@ -15616,7 +15613,7 @@ slots: title: tertiary treatment examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - tertiary treatment is_a: core field @@ -15637,7 +15634,7 @@ slots: title: tidal stage examples: - value: high tide - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - tidal stage is_a: core field @@ -15657,7 +15654,7 @@ slots: title: history/tillage examples: - value: chisel - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - history/tillage is_a: core field @@ -15677,7 +15674,7 @@ slots: title: tissue culture growth media examples: - value: https://link.springer.com/content/pdf/10.1007/BF02796489.pdf - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - tissue culture growth media is_a: core field @@ -15701,7 +15698,7 @@ slots: title: toluene examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - toluene is_a: core field @@ -15724,7 +15721,7 @@ slots: title: total carbon examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - total carbon is_a: core field @@ -15747,7 +15744,7 @@ slots: title: total depth of water column examples: - value: 500 meter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - total depth of water column is_a: core field @@ -15771,7 +15768,7 @@ slots: title: total dissolved nitrogen examples: - value: 40 microgram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - total dissolved nitrogen is_a: core field @@ -15794,7 +15791,7 @@ slots: title: total inorganic nitrogen examples: - value: 40 microgram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - total inorganic nitrogen is_a: core field @@ -15817,7 +15814,7 @@ slots: title: total iron examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - total iron is_a: core field @@ -15842,7 +15839,7 @@ slots: title: total nitrogen concentration examples: - value: 50 micromole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - total nitrogen concentration is_a: core field @@ -15862,7 +15859,7 @@ slots: title: total nitrogen content method examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - total nitrogen content method is_a: core field @@ -15886,7 +15883,7 @@ slots: title: total nitrogen content examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - total nitrogen content is_a: core field @@ -15906,7 +15903,7 @@ slots: title: total organic carbon method examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - total organic carbon method is_a: core field @@ -15931,7 +15928,7 @@ slots: title: total organic carbon examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - total organic carbon is_a: core field @@ -15954,7 +15951,7 @@ slots: title: total particulate carbon examples: - value: 35 micromole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - total particulate carbon is_a: core field @@ -15978,7 +15975,7 @@ slots: title: total phosphorus examples: - value: 0.03 milligram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - total phosphorus is_a: core field @@ -16001,7 +15998,7 @@ slots: title: total phosphate examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - total phosphate is_a: core field @@ -16024,7 +16021,7 @@ slots: title: total sulfur examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - total sulfur is_a: core field @@ -16044,7 +16041,7 @@ slots: title: train line examples: - value: red - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - train line is_a: core field @@ -16064,7 +16061,7 @@ slots: title: train station collection location examples: - value: forest hills - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - train station collection location is_a: core field @@ -16084,7 +16081,7 @@ slots: title: train stop collection location examples: - value: end - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - train stop collection location is_a: core field @@ -16108,7 +16105,7 @@ slots: title: turbidity examples: - value: 0.3 nephelometric turbidity units - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - turbidity is_a: core field @@ -16132,7 +16129,7 @@ slots: title: depth (TVDSS) of hydrocarbon resource pressure examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - depth (TVDSS) of hydrocarbon resource pressure is_a: core field @@ -16156,7 +16153,7 @@ slots: title: depth (TVDSS) of hydrocarbon resource temperature examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - depth (TVDSS) of hydrocarbon resource temperature is_a: core field @@ -16176,7 +16173,7 @@ slots: title: typical occupant density examples: - value: '25' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - typical occupant density is_a: core field @@ -16199,7 +16196,7 @@ slots: title: ventilation rate examples: - value: 750 cubic meter per minute - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - ventilation rate is_a: core field @@ -16219,7 +16216,7 @@ slots: title: ventilation type examples: - value: Operable windows - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - ventilation type is_a: core field @@ -16243,7 +16240,7 @@ slots: title: volatile fatty acids examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - volatile fatty acids is_a: core field @@ -16266,7 +16263,7 @@ slots: title: vfa in formation water examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - vfa in formation water is_a: core field @@ -16286,7 +16283,7 @@ slots: title: visual media examples: - value: 3D scans - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - visual media is_a: core field @@ -16310,7 +16307,7 @@ slots: title: viscosity examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - viscosity is_a: core field @@ -16336,7 +16333,7 @@ slots: title: volatile organic compounds examples: - value: formaldehyde;500 nanogram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - volatile organic compounds is_a: core field @@ -16360,7 +16357,7 @@ slots: title: wall area examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - wall area is_a: core field @@ -16381,7 +16378,7 @@ slots: title: wall construction type examples: - value: fire resistive - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - wall construction type is_a: core field @@ -16401,7 +16398,7 @@ slots: title: wall finish material examples: - value: wood - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - wall finish material is_a: core field @@ -16424,7 +16421,7 @@ slots: title: wall height examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - wall height is_a: core field @@ -16444,7 +16441,7 @@ slots: title: wall location examples: - value: north - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - wall location is_a: core field @@ -16464,7 +16461,7 @@ slots: title: wall surface treatment examples: - value: paneling - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - wall surface treatment is_a: core field @@ -16484,7 +16481,7 @@ slots: title: wall texture examples: - value: popcorn - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - wall texture is_a: core field @@ -16509,7 +16506,7 @@ slots: title: wall thermal mass examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - wall thermal mass is_a: core field @@ -16529,7 +16526,7 @@ slots: title: wall signs of water/mold examples: - value: no presence of mold visible - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - wall signs of water/mold is_a: core field @@ -16551,7 +16548,7 @@ slots: title: wastewater type examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - wastewater type is_a: core field @@ -16572,7 +16569,7 @@ slots: title: water content method examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - water content method is_a: core field @@ -16596,7 +16593,7 @@ slots: title: water content examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - water content is_a: core field @@ -16619,7 +16616,7 @@ slots: title: water current examples: - value: 10 cubic meter per second - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - water current is_a: core field @@ -16643,7 +16640,7 @@ slots: title: water cut examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - water cut is_a: core field @@ -16666,7 +16663,7 @@ slots: title: water feature size examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - water feature size is_a: core field @@ -16686,7 +16683,7 @@ slots: title: water feature type examples: - value: stream - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - water feature type is_a: core field @@ -16709,7 +16706,7 @@ slots: title: water production rate examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - water production rate is_a: core field @@ -16735,7 +16732,7 @@ slots: title: water temperature regimen examples: - value: 15 degree Celsius;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - water temperature regimen is_a: core field @@ -16762,7 +16759,7 @@ slots: title: watering regimen examples: - value: 1 liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - watering regimen is_a: core field @@ -16783,7 +16780,7 @@ slots: title: weekday examples: - value: Sunday - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - weekday is_a: core field @@ -16806,7 +16803,7 @@ slots: title: well identification number examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - well identification number is_a: core field @@ -16827,7 +16824,7 @@ slots: title: wind direction examples: - value: Northwest - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - wind direction is_a: core field @@ -16851,7 +16848,7 @@ slots: title: wind speed examples: - value: 21 kilometer per hour - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - wind speed is_a: core field @@ -16871,7 +16868,7 @@ slots: title: window condition examples: - value: rupture - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - window condition is_a: core field @@ -16891,7 +16888,7 @@ slots: title: window covering examples: - value: curtains - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - window covering is_a: core field @@ -16911,7 +16908,7 @@ slots: title: window horizontal position examples: - value: middle - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - window horizontal position is_a: core field @@ -16931,7 +16928,7 @@ slots: title: window location examples: - value: west - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - window location is_a: core field @@ -16951,7 +16948,7 @@ slots: title: window material examples: - value: wood - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - window material is_a: core field @@ -16971,7 +16968,7 @@ slots: title: window open frequency examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - window open frequency is_a: core field @@ -16994,7 +16991,7 @@ slots: title: window area/size examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - window area/size is_a: core field @@ -17016,7 +17013,7 @@ slots: title: window status examples: - value: open - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - window status is_a: core field @@ -17037,7 +17034,7 @@ slots: title: window type examples: - value: fixed window - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - window type is_a: core field @@ -17057,7 +17054,7 @@ slots: title: window vertical position examples: - value: middle - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - window vertical position is_a: core field @@ -17077,7 +17074,7 @@ slots: title: window signs of water/mold examples: - value: no presence of mold visible - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - window signs of water/mold is_a: core field @@ -17101,7 +17098,7 @@ slots: title: xylene examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - xylene is_a: core field @@ -17110,54 +17107,54 @@ slots: range: QuantityValue sequencing field: name: sequencing field - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc + abstract: true + environment field: + name: environment field + description: field describing environmental aspect of a sample + from_schema: https://w3id.org/nmdc/nmdc abstract: true - has numeric value: - name: has numeric value - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - owner: QuantityValue - range: double investigation field: name: investigation field description: field describing aspect of the investigation/study to which the sample belongs - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - abstract: true - core field: - name: core field - description: basic fields - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc abstract: true + has numeric value: + name: has numeric value + from_schema: https://w3id.org/nmdc/nmdc + owner: QuantityValue + range: double + has raw value: + name: has raw value + from_schema: https://w3id.org/nmdc/nmdc + string_serialization: '{has numeric value} {has unit}' + owner: QuantityValue nucleic acid sequence source field: name: nucleic acid sequence source field - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc abstract: true - environment field: - name: environment field - description: field describing environmental aspect of a sample - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + core field: + name: core field + description: basic fields + from_schema: https://w3id.org/nmdc/nmdc abstract: true has unit: name: has unit description: Example "m" - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - owner: QuantityValue - has raw value: - name: has raw value - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - string_serialization: '{has numeric value} {has unit}' + from_schema: https://w3id.org/nmdc/nmdc owner: QuantityValue chemical: name: chemical description: from reaction participant class - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc stoichiometry: name: stoichiometry description: from reaction participant class - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc subject: name: subject - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: GeneProduct has_function: name: has_function @@ -17165,11 +17162,11 @@ slots: - the range for has_function was asserted as functional_annotation_term/FunctionalAnnotationTerm, - but is actually taking string arguments in MongoDB, - and those are frequently fulltext, not CURIEs. MAM 2021-06-23 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string has_participants: name: has_participants - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc exact_mappings: - RO:0000057 abstract: true @@ -17181,64 +17178,64 @@ slots: genomes, plasmids, and some viral genomes), the requirement for start to be less than or equal to end is satisfied by making end = the position of the end + the length of the landmark feature. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer minimum_value: 1 seqid: name: seqid todos: - change range from string to object - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc strand: name: strand todos: - set the range to an enum? - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc direction: name: direction - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc encodes: name: encodes - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc end: name: end - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc feature_type: name: feature_type - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc has_part: name: has_part - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_balanced: name: is_balanced - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_diastereoselective: name: is_diastereoselective - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_fully_characterized: name: is_fully_characterized - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_stereo: name: is_stereo - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_transport: name: is_transport - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc left_participants: name: left_participants - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc phase: name: phase - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc right_participants: name: right_participants - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc smarts_string: name: smarts_string - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc start: name: start - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc classes: Database: name: Database @@ -17246,7 +17243,7 @@ classes: need to correspond to an actual managed database top level holder class. When translated to JSON-Schema this is the 'root' object. It should contain pointers to other objects of interest - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - NMDC metadata object slots: @@ -17294,7 +17291,7 @@ classes: tree_root: true Pooling: name: Pooling - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: PlannedProcess slot_usage: has_input: @@ -17313,7 +17310,7 @@ classes: interpolated: true Extraction: name: Extraction - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: PlannedProcess slots: - extraction_method @@ -17338,13 +17335,13 @@ classes: interpolated: true Protocol: name: Protocol - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc slots: - url - name QualityControlReport: name: QualityControlReport - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc slots: - status - name @@ -17352,7 +17349,7 @@ classes: name: LibraryPreparation comments: - OBI:0000711 specifies a DNA input (but not ONLY a DNA input) - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - LibraryConstruction close_mappings: @@ -17389,7 +17386,7 @@ classes: the same plant were obtained at the same site. In this case, the site would correspond to one tree. - might correspond to GOLD's identifier on a page like https://gold.jgi.doe.gov/biosample?id=Gb0305833 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - research plot is_a: Site @@ -17418,7 +17415,7 @@ classes: title: Collecting Biosamples From Site comments: - this illustrates implementing a Biosample relation with a process class - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: PlannedProcess slot_usage: has_input: @@ -17447,7 +17444,7 @@ classes: - removed id_prefixes value of GOLD, since we are now using pattern-based id validation in_subset: - data object subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: NamedThing slots: - file_size_bytes @@ -17487,7 +17484,7 @@ classes: id validation in_subset: - sample subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample - material sample @@ -18575,7 +18572,7 @@ classes: but no longer for the Study.id in_subset: - sample subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - proposal - research proposal @@ -18700,7 +18697,7 @@ classes: description: A process that takes one or more biosamples as inputs and generates one or as outputs. Examples of outputs include samples cultivated from another sample or data objects created by instruments runs. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - material processing broad_mappings: @@ -18732,7 +18729,7 @@ classes: - The ID prefix for objects coming from GOLD will be gold:Gp in_subset: - sample subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - omics assay - sequencing project @@ -18782,7 +18779,7 @@ classes: will be at least a slot for a CRediT Contributor Role (https://casrai.org/credit/) and for a person value Specifically see the associated researchers tab on the NMDC_SampleMetadata-V4_CommentsForUpdates at https://docs.google.com/spreadsheets/d/1INlBo5eoqn2efn4H2P2i8rwRBtnbDVTqXrochJEAPko/edit#gid=0 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - study role - credit table @@ -18811,7 +18808,7 @@ classes: and stop times, potentially with different inputs and outputs in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - analysis is_a: Activity @@ -18866,7 +18863,7 @@ classes: relevant to NMDC in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: WorkflowExecutionActivity slots: - type @@ -18910,7 +18907,7 @@ classes: name: MetatranscriptomeAssembly in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: WorkflowExecutionActivity slots: - asm_score @@ -18955,7 +18952,7 @@ classes: annotation of assembled metagenome contigs in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: WorkflowExecutionActivity slots: - type @@ -18972,7 +18969,7 @@ classes: name: MetatranscriptomeAnnotationActivity in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: WorkflowExecutionActivity slots: - type @@ -18991,7 +18988,7 @@ classes: activity. in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: WorkflowExecutionActivity slots: - type @@ -19010,7 +19007,7 @@ classes: title: Metagenome-Assembled Genome analysis activity in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: WorkflowExecutionActivity slots: - type @@ -19035,7 +19032,7 @@ classes: title: Metagenome sequencing activity in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: WorkflowExecutionActivity slot_usage: id: @@ -19054,7 +19051,7 @@ classes: title: Read quality control analysis activity in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: WorkflowExecutionActivity slots: - type @@ -19080,7 +19077,7 @@ classes: title: Read based analysis activity in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: WorkflowExecutionActivity slots: - type @@ -19096,7 +19093,7 @@ classes: name: MetabolomicsAnalysisActivity in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: WorkflowExecutionActivity slots: - has_calibration @@ -19117,7 +19114,7 @@ classes: name: MetaproteomicsAnalysisActivity in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: WorkflowExecutionActivity slots: - has_peptide_quantifications @@ -19137,7 +19134,7 @@ classes: name: NomAnalysisActivity in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: WorkflowExecutionActivity slots: - has_calibration @@ -19156,7 +19153,7 @@ classes: NamedThing: name: NamedThing description: a databased entity or concept/class - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc abstract: true slots: - id @@ -19166,7 +19163,7 @@ classes: MaterialEntity: name: MaterialEntity title: Material Entity - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - Material - Physical entity @@ -19175,7 +19172,7 @@ classes: ProcessedSample: name: ProcessedSample title: Processed Sample - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: MaterialEntity slots: - biomaterial_purity @@ -19194,7 +19191,7 @@ classes: AnalyticalSample: name: AnalyticalSample title: Analytical Sample - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: MaterialEntity slot_usage: id: @@ -19209,7 +19206,7 @@ classes: title: Site comments: - BCO sample collection site ? - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: MaterialEntity abstract: true slot_usage: @@ -19223,7 +19220,7 @@ classes: PlannedProcess: name: PlannedProcess title: Planned Process - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: NamedThing abstract: true slots: @@ -19238,17 +19235,17 @@ classes: notes: - The identifiers for terms from external ontologies can't have their ids constrained to the nmdc namespace - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: NamedThing EnvironmentalMaterialTerm: name: EnvironmentalMaterialTerm - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: OntologyClass AttributeValue: name: AttributeValue description: The value for any value of a attribute for a sample. This object can hold both the un-normalized atomic value and the structured value - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc slots: - has_raw_value - was_generated_by @@ -19258,7 +19255,7 @@ classes: description: An optional string that specified the type of object. InstrumentValue: name: InstrumentValue - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: AttributeValue slots: - has_unit @@ -19267,7 +19264,7 @@ classes: QuantityValue: name: QuantityValue description: A simple quantity, e.g. 2cm - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mappings: - schema:QuantityValue is_a: AttributeValue @@ -19291,7 +19288,7 @@ classes: ImageValue: name: ImageValue description: An attribute value representing an image. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: AttributeValue slots: - url @@ -19303,7 +19300,7 @@ classes: todos: - add additional fields e.g for institution - deprecate "has_raw_value" in favor of "name" - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: AttributeValue slots: - orcid @@ -19340,7 +19337,7 @@ classes: is optional. MagBin: name: MagBin - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc slots: - bin_name - bin_quality @@ -19366,7 +19363,7 @@ classes: name: Instrument description: A material entity that is designed to perform a function in a scientific investigation, but is not a reagent[OBI]. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - device exact_mappings: @@ -19384,7 +19381,7 @@ classes: name: MetaboliteQuantification description: This is used to link a metabolomics analysis workflow to a specific metabolite - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc slots: - alternative_identifiers - highest_similarity_score @@ -19393,7 +19390,7 @@ classes: name: PeptideQuantification description: This is used to link a metaproteomics analysis workflow to a specific peptide sequence and related information - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc slots: - all_proteins - best_protein @@ -19405,7 +19402,7 @@ classes: name: ProteinQuantification description: This is used to link a metaproteomics analysis workflow to a specific protein - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc slot_usage: best_protein: name: best_protein @@ -19450,7 +19447,7 @@ classes: comments: - As with the parent OntologyClass, we will not assign an nmdc id pattern or typecode to this class. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://bioconductor.org/packages/devel/data/annotation/vignettes/metaboliteIDmapping/inst/doc/metaboliteIDmapping.html aliases: @@ -19490,40 +19487,40 @@ classes: notes: - we may include a more general gene product class in future to allow for ncRNA annotation - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc exact_mappings: - biolink:GeneProduct is_a: NamedThing TextValue: name: TextValue description: A basic string value - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: AttributeValue slots: - language UrlValue: name: UrlValue description: A value that is a string that conforms to URL syntax - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: AttributeValue TimestampValue: name: TimestampValue description: A value that is a timestamp. The range should be ISO-8601 notes: - 'removed the following slots: year, month, day' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: AttributeValue IntegerValue: name: IntegerValue description: A value that is an integer - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: AttributeValue slots: - has_numeric_value BooleanValue: name: BooleanValue description: A value that is a boolean - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: AttributeValue slots: - has_boolean_value @@ -19532,7 +19529,7 @@ classes: description: A controlled term or class from an ontology todos: - add fields for ontology, branch - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: AttributeValue slots: - term @@ -19542,7 +19539,7 @@ classes: of term with an id notes: - To be used for slots like env_broad_scale - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: ControlledTermValue slot_usage: term: @@ -19553,7 +19550,7 @@ classes: description: A normalized value for a location on the earth's surface notes: - 'what did ''to_str: {latitude} {longitude}'' mean?' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mappings: - schema:GeoCoordinates is_a: AttributeValue @@ -19573,7 +19570,7 @@ classes: Activity: name: Activity description: a provence-generating activity - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mappings: - prov:Activity slots: @@ -19597,7 +19594,7 @@ classes: DissolvingActivity: name: DissolvingActivity title: Dissolving activity - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - dissolution-activity slots: @@ -19622,7 +19619,7 @@ classes: LabDevice: name: LabDevice title: Lab device - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc slots: - device_type - activity_speed @@ -19631,14 +19628,14 @@ classes: MaterialContainer: name: MaterialContainer title: Material container - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc slots: - container_size - container_type MaterialSample: name: MaterialSample title: Material sample - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - Material entity is_a: NamedThing @@ -19653,7 +19650,7 @@ classes: MaterialSamplingActivity: name: MaterialSamplingActivity title: Material sampling activity - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - weighing-activity slots: @@ -19685,7 +19682,7 @@ classes: ReactionActivity: name: ReactionActivity title: Reaction activity - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - reaction-activity slots: @@ -19713,7 +19710,7 @@ classes: description: A feature localized to an interval along a genome comments: - corresponds to an entry in GFF3 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://github.com/The-Sequence-Ontology/Specifications/blob/master/gff3.md slot_usage: @@ -19775,7 +19772,7 @@ classes: to a functional unit of a genome (protein, ncRNA, complex). todos: - decide if this should be used for product naming - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - function - FunctionalAnnotation @@ -19788,7 +19785,7 @@ classes: - COG description: A pathway is a sequence of steps/reactions carried out by an organism or community of organisms - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - biological process - metabolic pathway @@ -19816,7 +19813,7 @@ classes: description: An individual biochemical transformation carried out by a functional unit of an organism, in which a collection of substrates are transformed into a collection of products. Can also represent transporters - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc exact_mappings: - biolink:MolecularActivity is_a: FunctionalAnnotationTerm @@ -19856,7 +19853,7 @@ classes: ReactionParticipant: name: ReactionParticipant description: Instances of this link a reaction to a chemical entity participant - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc slot_usage: chemical: name: chemical @@ -19877,7 +19874,7 @@ classes: description: A set of genes or gene products in which all members are orthologous notes: - KEGG.ORTHOLOGY prefix is used for KO numbers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc exact_mappings: - biolink:GeneFamily is_a: FunctionalAnnotationTerm @@ -19890,7 +19887,7 @@ classes: typically using HMM or Blast type methods notes: - move id slot usage patterns to has_function slot usage? - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://img.jgi.doe.gov/docs/functional-annotation.pdf - https://github.com/microbiomedata/mg_annotation/blob/master/functional-annotation.wdl diff --git a/nmdc_schema/nmdc_schema_merged.yaml b/nmdc_schema/nmdc_schema_merged.yaml index 6192f69522..dff96cd9eb 100644 --- a/nmdc_schema/nmdc_schema_merged.yaml +++ b/nmdc_schema/nmdc_schema_merged.yaml @@ -12,43 +12,61 @@ notes: need better understanding of id patterns (at least) - commented out several MIxS terms assigned to Biosample because the definitions of those terms were commented out in mixs.yaml dues to shared slot uris -id: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc -version: v7.6.1 +id: https://w3id.org/nmdc/nmdc +version: v7.6.2 license: https://creativecommons.org/publicdomain/zero/1.0/ prefixes: + EFO: + prefix_prefix: EFO + prefix_reference: http://www.ebi.ac.uk/efo/ + ISA: + prefix_prefix: ISA + prefix_reference: http://example.com/isa/ + MetaNetX: + prefix_prefix: MetaNetX + prefix_reference: http://example.com/metanetx/ + RetroRules: + prefix_prefix: RetroRules + prefix_reference: http://example.com/retrorules/ emsl.project: prefix_prefix: emsl.project - prefix_reference: 'https://bioregistry.io/reference/emsl.project:' + prefix_reference: 'https://bioregistry.io/emsl.project:' + generic: + prefix_prefix: generic + prefix_reference: https://example.com/generic/ gnps.task: prefix_prefix: gnps.task - prefix_reference: 'https://bioregistry.io/reference/gnps.task:' + prefix_reference: 'https://bioregistry.io/gnps.task:' + gtpo: + prefix_prefix: gtpo + prefix_reference: http://example.com/gtpo/ + igsn: + prefix_prefix: igsn + prefix_reference: https://app.geosamples.org/sample/igsn/ jgi.proposal: prefix_prefix: jgi.proposal - prefix_reference: 'https://bioregistry.io/reference/jgi.proposal:' + prefix_reference: 'https://bioregistry.io/jgi.proposal:' + jgi: + prefix_prefix: jgi + prefix_reference: http://example.com/jgi/ + linkml: + prefix_prefix: linkml + prefix_reference: https://w3id.org/linkml/ + mgnify.proj: + prefix_prefix: mgnify.proj + prefix_reference: 'https://identifiers.org/mgnify.proj:' neon.identifier: prefix_prefix: neon.identifier prefix_reference: http://example.org/neon/identifier/ neon.schema: prefix_prefix: neon.schema prefix_reference: http://example.org/neon/schema/ - generic: - prefix_prefix: generic - prefix_reference: https://example.com/generic/ - linkml: - prefix_prefix: linkml - prefix_reference: https://w3id.org/linkml/ nmdc: prefix_prefix: nmdc prefix_reference: https://w3id.org/nmdc/ - nmdc_yaml: - prefix_prefix: nmdc_yaml - prefix_reference: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/ skos: prefix_prefix: skos prefix_reference: http://www.w3.org/2004/02/skos/core# - igsn: - prefix_prefix: igsn - prefix_reference: https://app.geosamples.org/sample/igsn/ prov: prefix_prefix: prov prefix_reference: http://www.w3.org/ns/prov# @@ -61,27 +79,6 @@ prefixes: xsd: prefix_prefix: xsd prefix_reference: http://www.w3.org/2001/XMLSchema# - EFO: - prefix_prefix: EFO - prefix_reference: http://identifiers.org/efo/ - MetaNetX: - prefix_prefix: MetaNetX - prefix_reference: http://example.com/metanetx/ - ISA: - prefix_prefix: ISA - prefix_reference: http://example.com/isa/ - RetroRules: - prefix_prefix: RetroRules - prefix_reference: http://example.com/retrorules/ - gtpo: - prefix_prefix: gtpo - prefix_reference: http://example.com/gtpo/ - jgi: - prefix_prefix: jgi - prefix_reference: http://example.com/jgi/ - mgnify.proj: - prefix_prefix: mgnify.proj - prefix_reference: 'https://identifiers.org/mgnify.proj:' KEGG.COMPOUND: prefix_prefix: KEGG.COMPOUND prefix_reference: http://identifiers.org/kegg.compound/ @@ -129,10 +126,10 @@ prefixes: prefix_reference: https://raw.githubusercontent.com/microbiomedata/mixs/main/model/schema/ COG: prefix_prefix: COG - prefix_reference: 'https://bioregistry.io/reference/cog:' + prefix_reference: 'https://bioregistry.io/cog:' EC: prefix_prefix: EC - prefix_reference: 'https://bioregistry.io/reference/eccode:' + prefix_reference: 'https://bioregistry.io/eccode:' GO: prefix_prefix: GO prefix_reference: http://purl.obolibrary.org/obo/GO_ @@ -169,28 +166,28 @@ subsets: name: sample subset description: Subset consisting of entities linked to the processing of samples. Currently, this subset consists of study, omics process, and biosample. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc data object subset: name: data object subset description: Subset consisting of the data objects that either inputs or outputs of processes or workflows. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc workflow subset: name: workflow subset description: Subset consisting of just the workflow execution activities - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity environment: name: environment - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core investigation: name: investigation - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core nucleic acid sequence source: name: nucleic acid sequence source - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core sequencing: name: sequencing - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core mixs_environmental_triad: name: mixs_environmental_triad title: MIxS Environmental Triad @@ -214,7 +211,7 @@ types: bytes: name: bytes description: An integer value that corresponds to a size in bytes - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core see_also: - UO:0000233 base: int @@ -222,7 +219,7 @@ types: decimal degree: name: decimal degree description: A decimal degree expresses latitude or longitude as decimal fractions. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core see_also: - https://en.wikipedia.org/wiki/Decimal_degrees base: float @@ -230,14 +227,14 @@ types: language code: name: language code description: A language code conforming to ISO_639-1 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core see_also: - https://en.wikipedia.org/wiki/ISO_639-1 base: str uri: xsd:language unit: name: unit - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core mappings: - qud:Unit - UO:0000000 @@ -246,7 +243,7 @@ types: external identifier: name: external identifier description: A CURIE representing an external identifier - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers see_also: - https://microbiomedata.github.io/nmdc-schema/identifiers.html typeof: uriorcurie @@ -398,7 +395,7 @@ types: enums: StatusEnum: name: StatusEnum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: pass: text: pass @@ -406,7 +403,7 @@ enums: text: fail ExtractionTargetEnum: name: ExtractionTargetEnum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: DNA: text: DNA @@ -418,7 +415,7 @@ enums: text: protein LibraryTypeEnum: name: LibraryTypeEnum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: DNA: text: DNA @@ -426,7 +423,7 @@ enums: text: RNA JgiContTypeEnum: name: JgiContTypeEnum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: plate: text: plate @@ -435,7 +432,7 @@ enums: YesNoEnum: name: YesNoEnum description: replaces DnaDnaseEnum and DnaseRnaEnum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: 'no': text: 'no' @@ -451,7 +448,7 @@ enums: - They might also be applicable to other classes - They are intended to enable metadata search and or filtering, for example in the NMDC data portal, https://data.microbiomedata.org/ - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - category tag permissible_values: @@ -478,7 +475,7 @@ enums: title: National Science Foundation's National Ecological Observatory Network file type enum: name: file type enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: Metagenome Raw Reads: text: Metagenome Raw Reads @@ -865,7 +862,7 @@ enums: name: credit enum comments: - credit enums come from https://casrai.org/credit/ - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: Conceptualization: text: Conceptualization @@ -923,7 +920,7 @@ enums: notes: - This will become the range of processing_institution.omics processing - use ROR meanings like https://ror.org/0168r3w48 for UCSD - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: UCSD: text: UCSD @@ -951,7 +948,7 @@ enums: ContainerTypeEnum: name: ContainerTypeEnum title: Container type enumeration - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep permissible_values: screw_top_conical: text: screw_top_conical @@ -961,7 +958,7 @@ enums: DeviceTypeEnum: name: DeviceTypeEnum title: Shaker type enumeration - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep permissible_values: orbital_shaker: text: orbital_shaker @@ -971,7 +968,7 @@ enums: title: Thermomixer SamplingMethodEnum: name: SamplingMethodEnum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep permissible_values: weighing: text: weighing @@ -979,7 +976,7 @@ enums: SolventEnum: name: SolventEnum title: Solvent enumeration - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep permissible_values: deionized_water: text: deionized_water @@ -996,7 +993,7 @@ enums: title: Chloroform analysis_type_enum: name: analysis_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/sample_id + from_schema: https://w3id.org/nmdc/portal/sample_id permissible_values: metabolomics: text: metabolomics @@ -1010,7 +1007,7 @@ enums: text: natural organic matter rna_sample_format_enum: name: rna_sample_format_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metatranscriptomics + from_schema: https://w3id.org/nmdc/portal/jgi_metatranscriptomics permissible_values: 10 mM Tris-HCl: text: 10 mM Tris-HCl @@ -1038,7 +1035,7 @@ enums: text: Gentegra-RNA dna_sample_format_enum: name: dna_sample_format_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metagenomics + from_schema: https://w3id.org/nmdc/portal/jgi_metagenomics permissible_values: 10 mM Tris-HCl: text: 10 mM Tris-HCl @@ -1066,24 +1063,84 @@ enums: text: Gentegra-RNA sample_type_enum: name: sample_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/emsl + from_schema: https://w3id.org/nmdc/portal/emsl permissible_values: soil: text: soil water_extract_soil: text: water_extract_soil - door_comp_type_enum: - name: door_comp_type_enum + wall_loc_enum: + name: wall_loc_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - metal covered: - text: metal covered - revolving: - text: revolving - sliding: - text: sliding - telescopic: - text: telescopic + north: + text: north + south: + text: south + east: + text: east + west: + text: west + wall_texture_enum: + name: wall_texture_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + crows feet: + text: crows feet + crows-foot stomp: + text: crows-foot stomp + ? '' + : text: '' + double skip: + text: double skip + hawk and trowel: + text: hawk and trowel + knockdown: + text: knockdown + popcorn: + text: popcorn + orange peel: + text: orange peel + rosebud stomp: + text: rosebud stomp + Santa-Fe texture: + text: Santa-Fe texture + skip trowel: + text: skip trowel + smooth: + text: smooth + stomp knockdown: + text: stomp knockdown + swirl: + text: swirl + door_type_metal_enum: + name: door_type_metal_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + collapsible: + text: collapsible + corrugated steel: + text: corrugated steel + hollow: + text: hollow + rolling shutters: + text: rolling shutters + steel plate: + text: steel plate + water_feat_type_enum: + name: water_feat_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + fountain: + text: fountain + pool: + text: pool + standing feature: + text: standing feature + stream: + text: stream + waterfall: + text: waterfall organism_count_enum: name: organism_count_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml @@ -1094,164 +1151,118 @@ enums: text: MPN other: text: other - light_type_enum: - name: light_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - natural light: - text: natural light - electric light: - text: electric light - desk lamp: - text: desk lamp - flourescent lights: - text: flourescent lights - none: - text: none - freq_clean_enum: - name: freq_clean_enum + growth_habit_enum: + name: growth_habit_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Daily: - text: Daily - Weekly: - text: Weekly - Monthly: - text: Monthly - Quarterly: - text: Quarterly - Annually: - text: Annually - other: - text: other - substructure_type_enum: - name: substructure_type_enum + erect: + text: erect + semi-erect: + text: semi-erect + spreading: + text: spreading + prostrate: + text: prostrate + room_samp_pos_enum: + name: room_samp_pos_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - crawlspace: - text: crawlspace - slab on grade: - text: slab on grade - basement: - text: basement - depos_env_enum: - name: depos_env_enum + north corner: + text: north corner + south corner: + text: south corner + west corner: + text: west corner + east corner: + text: east corner + northeast corner: + text: northeast corner + northwest corner: + text: northwest corner + southeast corner: + text: southeast corner + southwest corner: + text: southwest corner + center: + text: center + rel_samp_loc_enum: + name: rel_samp_loc_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Continental - Alluvial: - text: Continental - Alluvial - Continental - Aeolian: - text: Continental - Aeolian - Continental - Fluvial: - text: Continental - Fluvial - Continental - Lacustrine: - text: Continental - Lacustrine - Transitional - Deltaic: - text: Transitional - Deltaic - Transitional - Tidal: - text: Transitional - Tidal - Transitional - Lagoonal: - text: Transitional - Lagoonal - Transitional - Beach: - text: Transitional - Beach - Transitional - Lake: - text: Transitional - Lake - Marine - Shallow: - text: Marine - Shallow - Marine - Deep: - text: Marine - Deep - Marine - Reef: - text: Marine - Reef - Other - Evaporite: - text: Other - Evaporite - Other - Glacial: - text: Other - Glacial - Other - Volcanic: - text: Other - Volcanic - other: - text: other - shading_device_cond_enum: - name: shading_device_cond_enum + edge of car: + text: edge of car + center of car: + text: center of car + under a seat: + text: under a seat + wall_surf_treatment_enum: + name: wall_surf_treatment_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - damaged: - text: damaged - needs repair: - text: needs repair - new: - text: new - rupture: - text: rupture - visible wear: - text: visible wear - quad_pos_enum: - name: quad_pos_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - North side: - text: North side - West side: - text: West side - South side: - text: South side - East side: - text: East side - samp_floor_enum: - name: samp_floor_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - 1st floor: - text: 1st floor - 2nd floor: - text: 2nd floor - basement: - text: basement - lobby: - text: lobby - floor_cond_enum: - name: floor_cond_enum + painted: + text: painted + wall paper: + text: wall paper + no treatment: + text: no treatment + paneling: + text: paneling + stucco: + text: stucco + fabric: + text: fabric + train_line_enum: + name: train_line_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - new: - text: new - visible wear: - text: visible wear - needs repair: - text: needs repair - damaged: - text: damaged - rupture: - text: rupture - specific_enum: - name: specific_enum + red: + text: red + green: + text: green + orange: + text: orange + window_loc_enum: + name: window_loc_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - operation: - text: operation - as built: - text: as built - construction: - text: construction - bid: - text: bid - design: - text: design - photos: - text: photos - ceil_cond_enum: - name: ceil_cond_enum + north: + text: north + south: + text: south + east: + text: east + west: + text: west + ceil_texture_enum: + name: ceil_texture_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - new: - text: new - visible wear: - text: visible wear - needs repair: - text: needs repair - damaged: - text: damaged - rupture: - text: rupture + crows feet: + text: crows feet + crows-foot stomp: + text: crows-foot stomp + double skip: + text: double skip + hawk and trowel: + text: hawk and trowel + knockdown: + text: knockdown + popcorn: + text: popcorn + orange peel: + text: orange peel + rosebud stomp: + text: rosebud stomp + Santa-Fe texture: + text: Santa-Fe texture + skip trowel: + text: skip trowel + smooth: + text: smooth + stomp knockdown: + text: stomp knockdown + swirl: + text: swirl oxy_stat_samp_enum: name: oxy_stat_samp_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml @@ -1262,96 +1273,110 @@ enums: text: anaerobic other: text: other - shading_device_type_enum: - name: shading_device_type_enum + plant_sex_enum: + name: plant_sex_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - bahama shutters: - text: bahama shutters - exterior roll blind: - text: exterior roll blind - gambrel awning: - text: gambrel awning - hood awning: - text: hood awning - porchroller awning: - text: porchroller awning - sarasota shutters: - text: sarasota shutters - slatted aluminum: - text: slatted aluminum - solid aluminum awning: - text: solid aluminum awning - sun screen: - text: sun screen - tree: - text: tree - trellis: - text: trellis - venetian awning: - text: venetian awning - vis_media_enum: - name: vis_media_enum + Androdioecious: + text: Androdioecious + Androecious: + text: Androecious + Androgynous: + text: Androgynous + Androgynomonoecious: + text: Androgynomonoecious + Andromonoecious: + text: Andromonoecious + Bisexual: + text: Bisexual + Dichogamous: + text: Dichogamous + Diclinous: + text: Diclinous + Dioecious: + text: Dioecious + Gynodioecious: + text: Gynodioecious + Gynoecious: + text: Gynoecious + Gynomonoecious: + text: Gynomonoecious + Hermaphroditic: + text: Hermaphroditic + Imperfect: + text: Imperfect + Monoclinous: + text: Monoclinous + Monoecious: + text: Monoecious + Perfect: + text: Perfect + Polygamodioecious: + text: Polygamodioecious + Polygamomonoecious: + text: Polygamomonoecious + Polygamous: + text: Polygamous + Protandrous: + text: Protandrous + Protogynous: + text: Protogynous + Subandroecious: + text: Subandroecious + Subdioecious: + text: Subdioecious + Subgynoecious: + text: Subgynoecious + Synoecious: + text: Synoecious + Trimonoecious: + text: Trimonoecious + Trioecious: + text: Trioecious + Unisexual: + text: Unisexual + ext_wall_orient_enum: + name: ext_wall_orient_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - photos: - text: photos - videos: - text: videos - commonly of the building: - text: commonly of the building - site context (adjacent buildings, vegetation, terrain, streets): - text: site context (adjacent buildings, vegetation, terrain, streets) - interiors: - text: interiors - equipment: - text: equipment - 3D scans: - text: 3D scans - drawings_enum: - name: drawings_enum + north: + text: north + south: + text: south + east: + text: east + west: + text: west + northeast: + text: northeast + southeast: + text: southeast + southwest: + text: southwest + northwest: + text: northwest + furniture_enum: + name: furniture_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - operation: - text: operation - as built: - text: as built - construction: - text: construction - bid: - text: bid - design: - text: design - building navigation map: - text: building navigation map - diagram: - text: diagram - sketch: - text: sketch - window_cover_enum: - name: window_cover_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - blinds: - text: blinds - curtains: - text: curtains - none: - text: none - hc_produced_enum: - name: hc_produced_enum + cabinet: + text: cabinet + chair: + text: chair + desks: + text: desks + sr_lithology_enum: + name: sr_lithology_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Oil: - text: Oil - Gas-Condensate: - text: Gas-Condensate - Gas: - text: Gas - Bitumen: - text: Bitumen - Coalbed Methane: - text: Coalbed Methane + Clastic: + text: Clastic + Carbonate: + text: Carbonate + Coal: + text: Coal + Biosilicieous: + text: Biosilicieous other: text: other train_stop_loc_enum: @@ -1364,140 +1389,282 @@ enums: text: mid downtown: text: downtown - build_occup_type_enum: - name: build_occup_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - office: - text: office - market: - text: market - restaurant: - text: restaurant - residence: - text: residence - school: - text: school - residential: - text: residential - commercial: - text: commercial - low rise: - text: low rise - high rise: - text: high rise - wood framed: - text: wood framed - health care: - text: health care - airport: - text: airport - sports complex: - text: sports complex - rel_samp_loc_enum: - name: rel_samp_loc_enum + substructure_type_enum: + name: substructure_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - edge of car: - text: edge of car - center of car: - text: center of car - under a seat: - text: under a seat - occup_document_enum: - name: occup_document_enum + crawlspace: + text: crawlspace + slab on grade: + text: slab on grade + basement: + text: basement + ceil_finish_mat_enum: + name: ceil_finish_mat_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - automated count: - text: automated count - estimate: - text: estimate - manual count: - text: manual count - videos: - text: videos - weekday_enum: - name: weekday_enum + drywall: + text: drywall + mineral fibre: + text: mineral fibre + tiles: + text: tiles + PVC: + text: PVC + plasterboard: + text: plasterboard + metal: + text: metal + fiberglass: + text: fiberglass + stucco: + text: stucco + mineral wool/calcium silicate: + text: mineral wool/calcium silicate + wood: + text: wood + door_type_enum: + name: door_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Monday: - text: Monday - Tuesday: - text: Tuesday - Wednesday: - text: Wednesday - Thursday: - text: Thursday - Friday: - text: Friday - Saturday: - text: Saturday - Sunday: - text: Sunday - soil_horizon_enum: - name: soil_horizon_enum + composite: + text: composite + metal: + text: metal + wooden: + text: wooden + biol_stat_enum: + name: biol_stat_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - O horizon: - text: O horizon - A horizon: - text: A horizon - E horizon: - text: E horizon - B horizon: - text: B horizon - C horizon: - text: C horizon - R layer: - text: R layer - Permafrost: - text: Permafrost - M horizon: - text: M horizon - room_loc_enum: - name: room_loc_enum + wild: + text: wild + natural: + text: natural + semi-natural: + text: semi-natural + inbred line: + text: inbred line + breeder's line: + text: breeder's line + hybrid: + text: hybrid + clonal selection: + text: clonal selection + mutant: + text: mutant + window_vert_pos_enum: + name: window_vert_pos_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - corner room: - text: corner room - interior room: - text: interior room - exterior wall: - text: exterior wall - indoor_surf_enum: - name: indoor_surf_enum + bottom: + text: bottom + middle: + text: middle + top: + text: top + low: + text: low + high: + text: high + tillage_enum: + name: tillage_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - cabinet: - text: cabinet - ceiling: - text: ceiling - counter top: - text: counter top - door: - text: door - shelving: - text: shelving - vent cover: - text: vent cover - window: - text: window - wall: - text: wall - door_type_wood_enum: - name: door_type_wood_enum + drill: + text: drill + cutting disc: + text: cutting disc + ridge till: + text: ridge till + strip tillage: + text: strip tillage + zonal tillage: + text: zonal tillage + chisel: + text: chisel + tined: + text: tined + mouldboard: + text: mouldboard + disc plough: + text: disc plough + build_docs_enum: + name: build_docs_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - bettened and ledged: - text: bettened and ledged - battened: - text: battened - ledged and braced: - text: ledged and braced - ledged and framed: - text: ledged and framed - ledged, braced and frame: - text: ledged, braced and frame + building information model: + text: building information model + commissioning report: + text: commissioning report + complaint logs: + text: complaint logs + contract administration: + text: contract administration + cost estimate: + text: cost estimate + janitorial schedules or logs: + text: janitorial schedules or logs + maintenance plans: + text: maintenance plans + schedule: + text: schedule + sections: + text: sections + shop drawings: + text: shop drawings + submittals: + text: submittals + ventilation system: + text: ventilation system + windows: + text: windows + window_type_enum: + name: window_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + single-hung sash window: + text: single-hung sash window + horizontal sash window: + text: horizontal sash window + fixed window: + text: fixed window + mech_struc_enum: + name: mech_struc_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + subway: + text: subway + coach: + text: coach + carriage: + text: carriage + elevator: + text: elevator + escalator: + text: escalator + boat: + text: boat + train: + text: train + car: + text: car + bus: + text: bus + door_loc_enum: + name: door_loc_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + north: + text: north + south: + text: south + east: + text: east + west: + text: west + shading_device_cond_enum: + name: shading_device_cond_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + damaged: + text: damaged + needs repair: + text: needs repair + new: + text: new + rupture: + text: rupture + visible wear: + text: visible wear + samp_floor_enum: + name: samp_floor_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + 1st floor: + text: 1st floor + 2nd floor: + text: 2nd floor + basement: + text: basement + lobby: + text: lobby + samp_collect_point_enum: + name: samp_collect_point_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + well: + text: well + test well: + text: test well + drilling rig: + text: drilling rig + wellhead: + text: wellhead + separator: + text: separator + storage tank: + text: storage tank + other: + text: other + sediment_type_enum: + name: sediment_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + biogenous: + text: biogenous + cosmogenous: + text: cosmogenous + hydrogenous: + text: hydrogenous + lithogenous: + text: lithogenous + indoor_space_enum: + name: indoor_space_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + bedroom: + text: bedroom + office: + text: office + bathroom: + text: bathroom + foyer: + text: foyer + kitchen: + text: kitchen + locker room: + text: locker room + hallway: + text: hallway + elevator: + text: elevator + handidness_enum: + name: handidness_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + ambidexterity: + text: ambidexterity + left handedness: + text: left handedness + mixed-handedness: + text: mixed-handedness + right handedness: + text: right handedness + door_type_wood_enum: + name: door_type_wood_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + bettened and ledged: + text: bettened and ledged + battened: + text: battened + ledged and braced: + text: ledged and braced + ledged and framed: + text: ledged and framed + ledged, braced and frame: + text: ledged, braced and frame framed and paneled: text: framed and paneled glashed or sash: @@ -1526,76 +1693,8 @@ enums: text: wood-framed concrete: text: concrete - door_type_metal_enum: - name: door_type_metal_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - collapsible: - text: collapsible - corrugated steel: - text: corrugated steel - hollow: - text: hollow - rolling shutters: - text: rolling shutters - steel plate: - text: steel plate - samp_weather_enum: - name: samp_weather_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - clear sky: - text: clear sky - cloudy: - text: cloudy - foggy: - text: foggy - hail: - text: hail - rain: - text: rain - snow: - text: snow - sleet: - text: sleet - sunny: - text: sunny - windy: - text: windy - ext_window_orient_enum: - name: ext_window_orient_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - northeast: - text: northeast - southeast: - text: southeast - southwest: - text: southwest - northwest: - text: northwest - sediment_type_enum: - name: sediment_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - biogenous: - text: biogenous - cosmogenous: - text: cosmogenous - hydrogenous: - text: hydrogenous - lithogenous: - text: lithogenous - room_condt_enum: - name: room_condt_enum + floor_cond_enum: + name: floor_cond_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: new: @@ -1608,108 +1707,110 @@ enums: text: damaged rupture: text: rupture - visible signs of mold/mildew: - text: visible signs of mold/mildew - sr_dep_env_enum: - name: sr_dep_env_enum + drawings_enum: + name: drawings_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Lacustine: - text: Lacustine - Fluvioldeltaic: - text: Fluvioldeltaic - Fluviomarine: - text: Fluviomarine - Marine: - text: Marine - other: - text: other - wall_surf_treatment_enum: - name: wall_surf_treatment_enum + operation: + text: operation + as built: + text: as built + construction: + text: construction + bid: + text: bid + design: + text: design + building navigation map: + text: building navigation map + diagram: + text: diagram + sketch: + text: sketch + room_condt_enum: + name: room_condt_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - painted: - text: painted - wall paper: - text: wall paper - no treatment: - text: no treatment - paneling: - text: paneling - stucco: - text: stucco - fabric: - text: fabric - water_feat_type_enum: - name: water_feat_type_enum + new: + text: new + visible wear: + text: visible wear + needs repair: + text: needs repair + damaged: + text: damaged + rupture: + text: rupture + visible signs of mold/mildew: + text: visible signs of mold/mildew + hc_produced_enum: + name: hc_produced_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - fountain: - text: fountain - pool: - text: pool - standing feature: - text: standing feature - stream: - text: stream - waterfall: - text: waterfall - window_mat_enum: - name: window_mat_enum + Oil: + text: Oil + Gas-Condensate: + text: Gas-Condensate + Gas: + text: Gas + Bitumen: + text: Bitumen + Coalbed Methane: + text: Coalbed Methane + other: + text: other + surf_material_enum: + name: surf_material_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - clad: - text: clad - fiberglass: - text: fiberglass + adobe: + text: adobe + carpet: + text: carpet + cinder blocks: + text: cinder blocks + concrete: + text: concrete + hay bales: + text: hay bales + glass: + text: glass metal: text: metal + paint: + text: paint + plastic: + text: plastic + stainless steel: + text: stainless steel + stone: + text: stone + stucco: + text: stucco + tile: + text: tile vinyl: text: vinyl wood: text: wood - furniture_enum: - name: furniture_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - cabinet: - text: cabinet - chair: - text: chair - desks: - text: desks - building_setting_enum: - name: building_setting_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - urban: - text: urban - suburban: - text: suburban - exurban: - text: exurban - rural: - text: rural - door_direct_enum: - name: door_direct_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - inward: - text: inward - outward: - text: outward - sideways: - text: sideways - window_horiz_pos_enum: - name: window_horiz_pos_enum + vis_media_enum: + name: vis_media_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - left: - text: left - middle: - text: middle - right: - text: right + photos: + text: photos + videos: + text: videos + commonly of the building: + text: commonly of the building + site context (adjacent buildings, vegetation, terrain, streets): + text: site context (adjacent buildings, vegetation, terrain, streets) + interiors: + text: interiors + equipment: + text: equipment + 3D scans: + text: 3D scans samp_dis_stage_enum: name: samp_dis_stage_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml @@ -1726,493 +1827,154 @@ enums: text: penetration other: text: other - door_cond_enum: - name: door_cond_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - damaged: - text: damaged - needs repair: - text: needs repair - new: - text: new - rupture: - text: rupture - visible wear: - text: visible wear - filter_type_enum: - name: filter_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - particulate air filter: - text: particulate air filter - chemical air filter: - text: chemical air filter - low-MERV pleated media: - text: low-MERV pleated media - HEPA: - text: HEPA - electrostatic: - text: electrostatic - gas-phase or ultraviolet air treatments: - text: gas-phase or ultraviolet air treatments - window_type_enum: - name: window_type_enum + profile_position_enum: + name: profile_position_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - single-hung sash window: - text: single-hung sash window - horizontal sash window: - text: horizontal sash window - fixed window: - text: fixed window - build_docs_enum: - name: build_docs_enum + summit: + text: summit + shoulder: + text: shoulder + backslope: + text: backslope + footslope: + text: footslope + toeslope: + text: toeslope + building_setting_enum: + name: building_setting_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - building information model: - text: building information model - commissioning report: - text: commissioning report - complaint logs: - text: complaint logs - contract administration: - text: contract administration - cost estimate: - text: cost estimate - janitorial schedules or logs: - text: janitorial schedules or logs - maintenance plans: - text: maintenance plans - schedule: - text: schedule - sections: - text: sections - shop drawings: - text: shop drawings - submittals: - text: submittals - ventilation system: - text: ventilation system - windows: - text: windows - cur_land_use_enum: - name: cur_land_use_enum + urban: + text: urban + suburban: + text: suburban + exurban: + text: exurban + rural: + text: rural + sr_geol_age_enum: + name: sr_geol_age_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - badlands: - text: badlands - cities: - text: cities - conifers: - text: conifers - annotations: - originally: - tag: originally - value: conifers (e.g. pine,spruce,fir,cypress) - examples: - - value: cypress - - value: fir - - value: pine - - value: spruce - crop trees: - text: crop trees - annotations: - originally: - tag: originally - value: crop trees (nuts,fruit,christmas trees,nursery trees) - examples: - - value: christmas trees - - value: fruit - - value: nursery trees - - value: nuts - farmstead: - text: farmstead - gravel: - text: gravel - hardwoods: - text: hardwoods - annotations: - originally: - tag: originally - value: hardwoods (e.g. oak,hickory,elm,aspen) - examples: - - value: aspen - - value: elm - - value: hickory - - value: oak - hayland: - text: hayland - horticultural plants: - text: horticultural plants - annotations: - originally: - tag: originally - value: horticultural plants (e.g. tulips) - examples: - - value: tulips - industrial areas: - text: industrial areas - intermixed hardwood and conifers: - text: intermixed hardwood and conifers - marshlands: - text: marshlands - annotations: - originally: - tag: originally - value: marshlands (grass,sedges,rushes) - examples: - - value: grass - - value: rushes - - value: sedgees - meadows: - text: meadows - annotations: - originally: - tag: originally - value: meadows (grasses,alfalfa,fescue,bromegrass,timothy) - examples: - - value: alfalfa - - value: bromegrass - - value: fescue - - value: grasses - - value: timothy - mines/quarries: - text: mines/quarries - mudflats: - text: mudflats - oil waste areas: - text: oil waste areas - pastureland: - text: pastureland - annotations: - originally: - tag: originally - value: pastureland (grasslands used for livestock grazing) - comments: - - grasslands used for livestock grazing - permanent snow or ice: - text: permanent snow or ice - rainforest: - text: rainforest - annotations: - originally: - tag: originally - value: rainforest (evergreen forest receiving greater than 406 cm annual - rainfall) - comments: - - evergreen forest receiving greater than 406 cm annual rainfall - rangeland: - text: rangeland - roads/railroads: - text: roads/railroads - rock: - text: rock - row crops: - text: row crops - saline seeps: - text: saline seeps - salt flats: - text: salt flats - sand: - text: sand - shrub crops: - text: shrub crops - annotations: - originally: - tag: originally - value: shrub crops (blueberries,nursery ornamentals,filberts) - examples: - - value: blueberries - - value: filberts - - value: nursery ornamentals - shrub land: - text: shrub land - annotations: - originally: - tag: originally - value: shrub land (e.g. mesquite,sage-brush,creosote bush,shrub oak,eucalyptus) - examples: - - value: creosote bush - - value: eucalyptus - - value: mesquite - - value: sage-brush - - value: shrub oak - small grains: - text: small grains - successional shrub land: - text: successional shrub land - annotations: - originally: - tag: originally - value: successional shrub land (tree saplings,hazels,sumacs,chokecherry,shrub - dogwoods,blackberries) - examples: - - value: blackberries - - value: chokecherry - - value: hazels - - value: shrub dogwoods - - value: sumacs - - value: tree saplings - swamp: - text: swamp - annotations: - originally: - tag: originally - value: swamp (permanent or semi-permanent water body dominated by woody - plants) - comments: - - permanent or semi-permanent water body dominated by woody plants - tropical: - text: tropical - annotations: - originally: - tag: originally - value: tropical (e.g. mangrove,palms) - examples: - - value: mangrove - - value: palms - tundra: - text: tundra - annotations: - originally: - tag: originally - value: tundra (mosses,lichens) - examples: - - value: lichens - - value: mosses - vegetable crops: - text: vegetable crops - vine crops: - text: vine crops - annotations: - originally: - tag: originally - value: vine crops (grapes) - examples: - - value: grapes - host_sex_enum: - name: host_sex_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - female: - text: female - hermaphrodite: - text: hermaphrodite - male: - text: male - neuter: - text: neuter - samp_collect_point_enum: - name: samp_collect_point_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - well: - text: well - test well: - text: test well - drilling rig: - text: drilling rig - wellhead: - text: wellhead - separator: - text: separator - storage tank: - text: storage tank + Archean: + text: Archean + Cambrian: + text: Cambrian + Carboniferous: + text: Carboniferous + Cenozoic: + text: Cenozoic + Cretaceous: + text: Cretaceous + Devonian: + text: Devonian + Jurassic: + text: Jurassic + Mesozoic: + text: Mesozoic + Neogene: + text: Neogene + Ordovician: + text: Ordovician + Paleogene: + text: Paleogene + Paleozoic: + text: Paleozoic + Permian: + text: Permian + Precambrian: + text: Precambrian + Proterozoic: + text: Proterozoic + Silurian: + text: Silurian + Triassic: + text: Triassic other: text: other - train_line_enum: - name: train_line_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - red: - text: red - green: - text: green - orange: - text: orange - mech_struc_enum: - name: mech_struc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - subway: - text: subway - coach: - text: coach - carriage: - text: carriage - elevator: - text: elevator - escalator: - text: escalator - boat: - text: boat - train: - text: train - car: - text: car - bus: - text: bus - lithology_enum: - name: lithology_enum + samp_capt_status_enum: + name: samp_capt_status_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Basement: - text: Basement - Chalk: - text: Chalk - Chert: - text: Chert - Coal: - text: Coal - Conglomerate: - text: Conglomerate - Diatomite: - text: Diatomite - Dolomite: - text: Dolomite - Limestone: - text: Limestone - Sandstone: - text: Sandstone - Shale: - text: Shale - Siltstone: - text: Siltstone - Volcanic: - text: Volcanic + active surveillance in response to an outbreak: + text: active surveillance in response to an outbreak + active surveillance not initiated by an outbreak: + text: active surveillance not initiated by an outbreak + farm sample: + text: farm sample + market sample: + text: market sample other: text: other - door_mat_enum: - name: door_mat_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - aluminum: - text: aluminum - cellular PVC: - text: cellular PVC - engineered plastic: - text: engineered plastic - fiberboard: - text: fiberboard - fiberglass: - text: fiberglass - metal: - text: metal - thermoplastic alloy: - text: thermoplastic alloy - vinyl: - text: vinyl - wood: - text: wood - wood/plastic composite: - text: wood/plastic composite - floor_water_mold_enum: - name: floor_water_mold_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - mold odor: - text: mold odor - wet floor: - text: wet floor - water stains: - text: water stains - wall discoloration: - text: wall discoloration - floor discoloration: - text: floor discoloration - ceiling discoloration: - text: ceiling discoloration - peeling paint or wallpaper: - text: peeling paint or wallpaper - bulging walls: - text: bulging walls - condensation: - text: condensation - surf_air_cont_enum: - name: surf_air_cont_enum + soil_horizon_enum: + name: soil_horizon_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - dust: - text: dust - organic matter: - text: organic matter - particulate matter: - text: particulate matter - volatile organic compounds: - text: volatile organic compounds - biological contaminants: - text: biological contaminants - radon: - text: radon - nutrients: - text: nutrients - biocides: - text: biocides - ceil_finish_mat_enum: - name: ceil_finish_mat_enum + O horizon: + text: O horizon + A horizon: + text: A horizon + E horizon: + text: E horizon + B horizon: + text: B horizon + C horizon: + text: C horizon + R layer: + text: R layer + Permafrost: + text: Permafrost + M horizon: + text: M horizon + ext_window_orient_enum: + name: ext_window_orient_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - drywall: - text: drywall - mineral fibre: - text: mineral fibre - tiles: - text: tiles - PVC: - text: PVC - plasterboard: - text: plasterboard - metal: - text: metal - fiberglass: - text: fiberglass - stucco: - text: stucco - mineral wool/calcium silicate: - text: mineral wool/calcium silicate - wood: - text: wood - samp_md_enum: - name: samp_md_enum + north: + text: north + south: + text: south + east: + text: east + west: + text: west + northeast: + text: northeast + southeast: + text: southeast + southwest: + text: southwest + northwest: + text: northwest + heat_deliv_loc_enum: + name: heat_deliv_loc_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - DF: - text: DF - RT: - text: RT - KB: - text: KB - MSL: - text: MSL - other: - text: other - wall_finish_mat_enum: - name: wall_finish_mat_enum + north: + text: north + south: + text: south + east: + text: east + west: + text: west + door_move_enum: + name: door_move_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - plaster: - text: plaster - gypsum plaster: - text: gypsum plaster - veneer plaster: - text: veneer plaster - gypsum board: - text: gypsum board - tile: - text: tile - terrazzo: - text: terrazzo - stone facing: - text: stone facing - acoustical treatment: - text: acoustical treatment - wood: - text: wood - metal: - text: metal - masonry: - text: masonry + collapsible: + text: collapsible + folding: + text: folding + revolving: + text: revolving + rolling shutter: + text: rolling shutter + sliding: + text: sliding + swinging: + text: swinging floor_finish_mat_enum: name: floor_finish_mat_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml @@ -2253,264 +2015,164 @@ enums: text: paint none or unfinished: text: none or unfinished - sr_kerog_type_enum: - name: sr_kerog_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - Type I: - text: Type I - Type II: - text: Type II - Type III: - text: Type III - Type IV: - text: Type IV - other: - text: other - biotic_relationship_enum: - name: biotic_relationship_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - free living: - text: free living - parasite: - text: parasite - commensal: - text: commensal - symbiont: - text: symbiont - room_connected_enum: - name: room_connected_enum + tidal_stage_enum: + name: tidal_stage_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - attic: - text: attic - bathroom: - text: bathroom - closet: - text: closet - conference room: - text: conference room - elevator: - text: elevator - examining room: - text: examining room - hallway: - text: hallway - kitchen: - text: kitchen - mail room: - text: mail room - office: - text: office - stairwell: - text: stairwell - growth_habit_enum: - name: growth_habit_enum + low tide: + text: low tide + ebb tide: + text: ebb tide + flood tide: + text: flood tide + high tide: + text: high tide + train_stat_loc_enum: + name: train_stat_loc_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - erect: - text: erect - semi-erect: - text: semi-erect - spreading: - text: spreading - prostrate: - text: prostrate - samp_subtype_enum: - name: samp_subtype_enum + south station above ground: + text: south station above ground + south station underground: + text: south station underground + south station amtrak: + text: south station amtrak + forest hills: + text: forest hills + riverside: + text: riverside + lithology_enum: + name: lithology_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - oil phase: - text: oil phase - water phase: - text: water phase - biofilm: - text: biofilm - not applicable: - text: not applicable + Basement: + text: Basement + Chalk: + text: Chalk + Chert: + text: Chert + Coal: + text: Coal + Conglomerate: + text: Conglomerate + Diatomite: + text: Diatomite + Dolomite: + text: Dolomite + Limestone: + text: Limestone + Sandstone: + text: Sandstone + Shale: + text: Shale + Siltstone: + text: Siltstone + Volcanic: + text: Volcanic other: text: other - plant_growth_med_enum: - name: plant_growth_med_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - other artificial liquid medium: - text: other artificial liquid medium - other artificial solid medium: - text: other artificial solid medium - peat moss: - text: peat moss - perlite: - text: perlite - pumice: - text: pumice - sand: - text: sand - soil: - text: soil - vermiculite: - text: vermiculite - water: - text: water - ext_wall_orient_enum: - name: ext_wall_orient_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - northeast: - text: northeast - southeast: - text: southeast - southwest: - text: southwest - northwest: - text: northwest - door_move_enum: - name: door_move_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - collapsible: - text: collapsible - folding: - text: folding - revolving: - text: revolving - rolling shutter: - text: rolling shutter - sliding: - text: sliding - swinging: - text: swinging - ceil_type_enum: - name: ceil_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - cathedral: - text: cathedral - dropped: - text: dropped - concave: - text: concave - barrel-shaped: - text: barrel-shaped - coffered: - text: coffered - cove: - text: cove - stretched: - text: stretched - heat_cool_type_enum: - name: heat_cool_type_enum + hcr_geol_age_enum: + name: hcr_geol_age_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - radiant system: - text: radiant system - heat pump: - text: heat pump - forced air system: - text: forced air system - steam forced heat: - text: steam forced heat - wood stove: - text: wood stove - window_vert_pos_enum: - name: window_vert_pos_enum + Archean: + text: Archean + Cambrian: + text: Cambrian + Carboniferous: + text: Carboniferous + Cenozoic: + text: Cenozoic + Cretaceous: + text: Cretaceous + Devonian: + text: Devonian + Jurassic: + text: Jurassic + Mesozoic: + text: Mesozoic + Neogene: + text: Neogene + Ordovician: + text: Ordovician + Paleogene: + text: Paleogene + Paleozoic: + text: Paleozoic + Permian: + text: Permian + Precambrian: + text: Precambrian + Proterozoic: + text: Proterozoic + Silurian: + text: Silurian + Triassic: + text: Triassic + other: + text: other + hcr_enum: + name: hcr_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - bottom: - text: bottom - middle: - text: middle - top: - text: top - low: - text: low - high: - text: high - indoor_space_enum: - name: indoor_space_enum + Oil Reservoir: + text: Oil Reservoir + Gas Reservoir: + text: Gas Reservoir + Oil Sand: + text: Oil Sand + Coalbed: + text: Coalbed + Shale: + text: Shale + Tight Oil Reservoir: + text: Tight Oil Reservoir + Tight Gas Reservoir: + text: Tight Gas Reservoir + other: + text: other + build_occup_type_enum: + name: build_occup_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - bedroom: - text: bedroom office: text: office - bathroom: - text: bathroom - foyer: - text: foyer - kitchen: - text: kitchen - locker room: - text: locker room - hallway: - text: hallway - elevator: - text: elevator - tidal_stage_enum: - name: tidal_stage_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - low tide: - text: low tide - ebb tide: - text: ebb tide - flood tide: - text: flood tide - high tide: - text: high tide - wall_texture_enum: - name: wall_texture_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - crows feet: - text: crows feet - crows-foot stomp: - text: crows-foot stomp - ? '' - : text: '' - double skip: - text: double skip - hawk and trowel: - text: hawk and trowel - knockdown: - text: knockdown - popcorn: - text: popcorn - orange peel: - text: orange peel - rosebud stomp: - text: rosebud stomp - Santa-Fe texture: - text: Santa-Fe texture - skip trowel: - text: skip trowel - smooth: - text: smooth - stomp knockdown: - text: stomp knockdown - swirl: - text: swirl - door_type_enum: - name: door_type_enum + market: + text: market + restaurant: + text: restaurant + residence: + text: residence + school: + text: school + residential: + text: residential + commercial: + text: commercial + low rise: + text: low rise + high rise: + text: high rise + wood framed: + text: wood framed + health care: + text: health care + airport: + text: airport + sports complex: + text: sports complex + window_cover_enum: + name: window_cover_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - composite: - text: composite - metal: - text: metal - wooden: - text: wooden - int_wall_cond_enum: - name: int_wall_cond_enum + blinds: + text: blinds + curtains: + text: curtains + none: + text: none + ceil_cond_enum: + name: ceil_cond_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: new: @@ -2523,272 +2185,250 @@ enums: text: damaged rupture: text: rupture - profile_position_enum: - name: profile_position_enum + plant_growth_med_enum: + name: plant_growth_med_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - summit: - text: summit - shoulder: - text: shoulder - backslope: - text: backslope - footslope: - text: footslope - toeslope: - text: toeslope - arch_struc_enum: - name: arch_struc_enum + other artificial liquid medium: + text: other artificial liquid medium + other artificial solid medium: + text: other artificial solid medium + peat moss: + text: peat moss + perlite: + text: perlite + pumice: + text: pumice + sand: + text: sand + soil: + text: soil + vermiculite: + text: vermiculite + water: + text: water + samp_md_enum: + name: samp_md_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - building: - text: building - shed: - text: shed - home: - text: home - surf_material_enum: - name: surf_material_enum + DF: + text: DF + RT: + text: RT + KB: + text: KB + MSL: + text: MSL + other: + text: other + door_direct_enum: + name: door_direct_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - adobe: - text: adobe - carpet: - text: carpet - cinder blocks: - text: cinder blocks - concrete: - text: concrete - hay bales: - text: hay bales - glass: - text: glass - metal: - text: metal - paint: - text: paint - plastic: - text: plastic - stainless steel: - text: stainless steel - stone: - text: stone - stucco: - text: stucco - tile: - text: tile - vinyl: - text: vinyl - wood: - text: wood - season_use_enum: - name: season_use_enum + inward: + text: inward + outward: + text: outward + sideways: + text: sideways + sr_dep_env_enum: + name: sr_dep_env_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Spring: - text: Spring - Summer: - text: Summer - Fall: - text: Fall - Winter: - text: Winter - drainage_class_enum: - name: drainage_class_enum + Lacustine: + text: Lacustine + Fluvioldeltaic: + text: Fluvioldeltaic + Fluviomarine: + text: Fluviomarine + Marine: + text: Marine + other: + text: other + window_mat_enum: + name: window_mat_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + clad: + text: clad + fiberglass: + text: fiberglass + metal: + text: metal + vinyl: + text: vinyl + wood: + text: wood + sr_kerog_type_enum: + name: sr_kerog_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - very poorly: - text: very poorly - poorly: - text: poorly - somewhat poorly: - text: somewhat poorly - moderately well: - text: moderately well - well: - text: well - excessively drained: - text: excessively drained - wall_loc_enum: - name: wall_loc_enum + Type I: + text: Type I + Type II: + text: Type II + Type III: + text: Type III + Type IV: + text: Type IV + other: + text: other + window_horiz_pos_enum: + name: window_horiz_pos_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - biol_stat_enum: - name: biol_stat_enum + left: + text: left + middle: + text: middle + right: + text: right + wall_finish_mat_enum: + name: wall_finish_mat_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - wild: - text: wild - natural: - text: natural - semi-natural: - text: semi-natural - inbred line: - text: inbred line - breeder's line: - text: breeder's line - hybrid: - text: hybrid - clonal selection: - text: clonal selection - mutant: - text: mutant - sr_lithology_enum: - name: sr_lithology_enum + plaster: + text: plaster + gypsum plaster: + text: gypsum plaster + veneer plaster: + text: veneer plaster + gypsum board: + text: gypsum board + tile: + text: tile + terrazzo: + text: terrazzo + stone facing: + text: stone facing + acoustical treatment: + text: acoustical treatment + wood: + text: wood + metal: + text: metal + masonry: + text: masonry + depos_env_enum: + name: depos_env_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Clastic: - text: Clastic - Carbonate: - text: Carbonate - Coal: - text: Coal - Biosilicieous: - text: Biosilicieous + Continental - Alluvial: + text: Continental - Alluvial + Continental - Aeolian: + text: Continental - Aeolian + Continental - Fluvial: + text: Continental - Fluvial + Continental - Lacustrine: + text: Continental - Lacustrine + Transitional - Deltaic: + text: Transitional - Deltaic + Transitional - Tidal: + text: Transitional - Tidal + Transitional - Lagoonal: + text: Transitional - Lagoonal + Transitional - Beach: + text: Transitional - Beach + Transitional - Lake: + text: Transitional - Lake + Marine - Shallow: + text: Marine - Shallow + Marine - Deep: + text: Marine - Deep + Marine - Reef: + text: Marine - Reef + Other - Evaporite: + text: Other - Evaporite + Other - Glacial: + text: Other - Glacial + Other - Volcanic: + text: Other - Volcanic other: text: other - hcr_geol_age_enum: - name: hcr_geol_age_enum + indoor_surf_enum: + name: indoor_surf_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Archean: - text: Archean - Cambrian: - text: Cambrian - Carboniferous: - text: Carboniferous - Cenozoic: - text: Cenozoic - Cretaceous: - text: Cretaceous - Devonian: - text: Devonian - Jurassic: - text: Jurassic - Mesozoic: - text: Mesozoic - Neogene: - text: Neogene - Ordovician: - text: Ordovician - Paleogene: - text: Paleogene - Paleozoic: - text: Paleozoic - Permian: - text: Permian - Precambrian: - text: Precambrian - Proterozoic: - text: Proterozoic - Silurian: - text: Silurian - Triassic: - text: Triassic - other: - text: other - fao_class_enum: - name: fao_class_enum + cabinet: + text: cabinet + ceiling: + text: ceiling + counter top: + text: counter top + door: + text: door + shelving: + text: shelving + vent cover: + text: vent cover + window: + text: window + wall: + text: wall + floor_water_mold_enum: + name: floor_water_mold_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Acrisols: - text: Acrisols - Andosols: - text: Andosols - Arenosols: - text: Arenosols - Cambisols: - text: Cambisols - Chernozems: - text: Chernozems - Ferralsols: - text: Ferralsols - Fluvisols: - text: Fluvisols - Gleysols: - text: Gleysols - Greyzems: - text: Greyzems - Gypsisols: - text: Gypsisols - Histosols: - text: Histosols - Kastanozems: - text: Kastanozems - Lithosols: - text: Lithosols - Luvisols: - text: Luvisols - Nitosols: - text: Nitosols - Phaeozems: - text: Phaeozems - Planosols: - text: Planosols - Podzols: - text: Podzols - Podzoluvisols: - text: Podzoluvisols - Rankers: - text: Rankers - Regosols: - text: Regosols - Rendzinas: - text: Rendzinas - Solonchaks: - text: Solonchaks - Solonetz: - text: Solonetz - Vertisols: - text: Vertisols - Yermosols: - text: Yermosols - wall_const_type_enum: - name: wall_const_type_enum + mold odor: + text: mold odor + wet floor: + text: wet floor + water stains: + text: water stains + wall discoloration: + text: wall discoloration + floor discoloration: + text: floor discoloration + ceiling discoloration: + text: ceiling discoloration + peeling paint or wallpaper: + text: peeling paint or wallpaper + bulging walls: + text: bulging walls + condensation: + text: condensation + freq_clean_enum: + name: freq_clean_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - frame construction: - text: frame construction - joisted masonry: - text: joisted masonry - light noncombustible: - text: light noncombustible - masonry noncombustible: - text: masonry noncombustible - modified fire resistive: - text: modified fire resistive - fire resistive: - text: fire resistive - room_samp_pos_enum: - name: room_samp_pos_enum + Daily: + text: Daily + Weekly: + text: Weekly + Monthly: + text: Monthly + Quarterly: + text: Quarterly + Annually: + text: Annually + other: + text: other + heat_cool_type_enum: + name: heat_cool_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - north corner: - text: north corner - south corner: - text: south corner - west corner: - text: west corner - east corner: - text: east corner - northeast corner: - text: northeast corner - northwest corner: - text: northwest corner - southeast corner: - text: southeast corner - southwest corner: - text: southwest corner - center: - text: center + radiant system: + text: radiant system + heat pump: + text: heat pump + forced air system: + text: forced air system + steam forced heat: + text: steam forced heat + wood stove: + text: wood stove + door_comp_type_enum: + name: door_comp_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + metal covered: + text: metal covered + revolving: + text: revolving + sliding: + text: sliding + telescopic: + text: telescopic window_cond_enum: name: window_cond_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml @@ -2803,124 +2443,180 @@ enums: text: rupture visible wear: text: visible wear - sr_geol_age_enum: - name: sr_geol_age_enum + ceil_type_enum: + name: ceil_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Archean: - text: Archean - Cambrian: - text: Cambrian - Carboniferous: - text: Carboniferous - Cenozoic: - text: Cenozoic - Cretaceous: - text: Cretaceous - Devonian: - text: Devonian - Jurassic: - text: Jurassic - Mesozoic: - text: Mesozoic - Neogene: - text: Neogene - Ordovician: - text: Ordovician - Paleogene: - text: Paleogene - Paleozoic: - text: Paleozoic - Permian: - text: Permian - Precambrian: - text: Precambrian - Proterozoic: - text: Proterozoic - Silurian: - text: Silurian - Triassic: - text: Triassic + cathedral: + text: cathedral + dropped: + text: dropped + concave: + text: concave + barrel-shaped: + text: barrel-shaped + coffered: + text: coffered + cove: + text: cove + stretched: + text: stretched + biotic_relationship_enum: + name: biotic_relationship_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + free living: + text: free living + parasite: + text: parasite + commensal: + text: commensal + symbiont: + text: symbiont + samp_subtype_enum: + name: samp_subtype_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + oil phase: + text: oil phase + water phase: + text: water phase + biofilm: + text: biofilm + not applicable: + text: not applicable other: text: other - tillage_enum: - name: tillage_enum + shading_device_type_enum: + name: shading_device_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - drill: - text: drill - cutting disc: - text: cutting disc - ridge till: - text: ridge till - strip tillage: - text: strip tillage - zonal tillage: - text: zonal tillage - chisel: - text: chisel - tined: - text: tined - mouldboard: - text: mouldboard - disc plough: - text: disc plough - heat_deliv_loc_enum: - name: heat_deliv_loc_enum + bahama shutters: + text: bahama shutters + exterior roll blind: + text: exterior roll blind + gambrel awning: + text: gambrel awning + hood awning: + text: hood awning + porchroller awning: + text: porchroller awning + sarasota shutters: + text: sarasota shutters + slatted aluminum: + text: slatted aluminum + solid aluminum awning: + text: solid aluminum awning + sun screen: + text: sun screen + tree: + text: tree + trellis: + text: trellis + venetian awning: + text: venetian awning + specific_enum: + name: specific_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - handidness_enum: - name: handidness_enum + operation: + text: operation + as built: + text: as built + construction: + text: construction + bid: + text: bid + design: + text: design + photos: + text: photos + season_use_enum: + name: season_use_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - ambidexterity: - text: ambidexterity - left handedness: - text: left handedness - mixed-handedness: - text: mixed-handedness - right handedness: - text: right handedness - hcr_enum: - name: hcr_enum + Spring: + text: Spring + Summer: + text: Summer + Fall: + text: Fall + Winter: + text: Winter + door_cond_enum: + name: door_cond_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + damaged: + text: damaged + needs repair: + text: needs repair + new: + text: new + rupture: + text: rupture + visible wear: + text: visible wear + quad_pos_enum: + name: quad_pos_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Oil Reservoir: - text: Oil Reservoir - Gas Reservoir: - text: Gas Reservoir - Oil Sand: - text: Oil Sand - Coalbed: - text: Coalbed - Shale: - text: Shale - Tight Oil Reservoir: - text: Tight Oil Reservoir - Tight Gas Reservoir: - text: Tight Gas Reservoir - other: - text: other - window_loc_enum: - name: window_loc_enum + North side: + text: North side + West side: + text: West side + South side: + text: South side + East side: + text: East side + samp_weather_enum: + name: samp_weather_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west + clear sky: + text: clear sky + cloudy: + text: cloudy + foggy: + text: foggy + hail: + text: hail + rain: + text: rain + snow: + text: snow + sleet: + text: sleet + sunny: + text: sunny + windy: + text: windy + room_connected_enum: + name: room_connected_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + attic: + text: attic + bathroom: + text: bathroom + closet: + text: closet + conference room: + text: conference room + elevator: + text: elevator + examining room: + text: examining room + hallway: + text: hallway + kitchen: + text: kitchen + mail room: + text: mail room + office: + text: office + stairwell: + text: stairwell gender_restroom_enum: name: gender_restroom_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml @@ -2937,276 +2633,577 @@ enums: text: male and female unisex: text: unisex - ceil_texture_enum: - name: ceil_texture_enum + host_sex_enum: + name: host_sex_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - crows feet: - text: crows feet - crows-foot stomp: - text: crows-foot stomp - double skip: - text: double skip - hawk and trowel: - text: hawk and trowel - knockdown: - text: knockdown - popcorn: - text: popcorn - orange peel: - text: orange peel - rosebud stomp: - text: rosebud stomp - Santa-Fe texture: - text: Santa-Fe texture - skip trowel: - text: skip trowel - smooth: - text: smooth - stomp knockdown: - text: stomp knockdown - swirl: - text: swirl - train_stat_loc_enum: - name: train_stat_loc_enum + female: + text: female + hermaphrodite: + text: hermaphrodite + male: + text: male + neuter: + text: neuter + weekday_enum: + name: weekday_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + Monday: + text: Monday + Tuesday: + text: Tuesday + Wednesday: + text: Wednesday + Thursday: + text: Thursday + Friday: + text: Friday + Saturday: + text: Saturday + Sunday: + text: Sunday + surf_air_cont_enum: + name: surf_air_cont_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + dust: + text: dust + organic matter: + text: organic matter + particulate matter: + text: particulate matter + volatile organic compounds: + text: volatile organic compounds + biological contaminants: + text: biological contaminants + radon: + text: radon + nutrients: + text: nutrients + biocides: + text: biocides + filter_type_enum: + name: filter_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + particulate air filter: + text: particulate air filter + chemical air filter: + text: chemical air filter + low-MERV pleated media: + text: low-MERV pleated media + HEPA: + text: HEPA + electrostatic: + text: electrostatic + gas-phase or ultraviolet air treatments: + text: gas-phase or ultraviolet air treatments + light_type_enum: + name: light_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + natural light: + text: natural light + electric light: + text: electric light + desk lamp: + text: desk lamp + flourescent lights: + text: flourescent lights + none: + text: none + arch_struc_enum: + name: arch_struc_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + building: + text: building + shed: + text: shed + home: + text: home + wall_const_type_enum: + name: wall_const_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + frame construction: + text: frame construction + joisted masonry: + text: joisted masonry + light noncombustible: + text: light noncombustible + masonry noncombustible: + text: masonry noncombustible + modified fire resistive: + text: modified fire resistive + fire resistive: + text: fire resistive + occup_document_enum: + name: occup_document_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + automated count: + text: automated count + estimate: + text: estimate + manual count: + text: manual count + videos: + text: videos + drainage_class_enum: + name: drainage_class_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + very poorly: + text: very poorly + poorly: + text: poorly + somewhat poorly: + text: somewhat poorly + moderately well: + text: moderately well + well: + text: well + excessively drained: + text: excessively drained + room_type_enum: + name: room_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + attic: + text: attic + bathroom: + text: bathroom + closet: + text: closet + conference room: + text: conference room + elevator: + text: elevator + examining room: + text: examining room + hallway: + text: hallway + kitchen: + text: kitchen + mail room: + text: mail room + private office: + text: private office + open office: + text: open office + stairwell: + text: stairwell + ',restroom': + text: ',restroom' + lobby: + text: lobby + vestibule: + text: vestibule + mechanical or electrical room: + text: mechanical or electrical room + data center: + text: data center + laboratory_wet: + text: laboratory_wet + laboratory_dry: + text: laboratory_dry + gymnasium: + text: gymnasium + natatorium: + text: natatorium + auditorium: + text: auditorium + lockers: + text: lockers + cafe: + text: cafe + warehouse: + text: warehouse + room_loc_enum: + name: room_loc_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - south station above ground: - text: south station above ground - south station underground: - text: south station underground - south station amtrak: - text: south station amtrak - forest hills: - text: forest hills - riverside: - text: riverside - plant_sex_enum: - name: plant_sex_enum + corner room: + text: corner room + interior room: + text: interior room + exterior wall: + text: exterior wall + int_wall_cond_enum: + name: int_wall_cond_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Androdioecious: - text: Androdioecious - Androecious: - text: Androecious - Androgynous: - text: Androgynous - Androgynomonoecious: - text: Androgynomonoecious - Andromonoecious: - text: Andromonoecious - Bisexual: - text: Bisexual - Dichogamous: - text: Dichogamous - Diclinous: - text: Diclinous - Dioecious: - text: Dioecious - Gynodioecious: - text: Gynodioecious - Gynoecious: - text: Gynoecious - Gynomonoecious: - text: Gynomonoecious - Hermaphroditic: - text: Hermaphroditic - Imperfect: - text: Imperfect - Monoclinous: - text: Monoclinous - Monoecious: - text: Monoecious - Perfect: - text: Perfect - Polygamodioecious: - text: Polygamodioecious - Polygamomonoecious: - text: Polygamomonoecious - Polygamous: - text: Polygamous - Protandrous: - text: Protandrous - Protogynous: - text: Protogynous - Subandroecious: - text: Subandroecious - Subdioecious: - text: Subdioecious - Subgynoecious: - text: Subgynoecious - Synoecious: - text: Synoecious - Trimonoecious: - text: Trimonoecious - Trioecious: - text: Trioecious - Unisexual: - text: Unisexual - door_loc_enum: - name: door_loc_enum + new: + text: new + visible wear: + text: visible wear + needs repair: + text: needs repair + damaged: + text: damaged + rupture: + text: rupture + cur_land_use_enum: + name: cur_land_use_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - room_type_enum: - name: room_type_enum + badlands: + text: badlands + cities: + text: cities + conifers: + text: conifers + annotations: + originally: + tag: originally + value: conifers (e.g. pine,spruce,fir,cypress) + examples: + - value: cypress + - value: fir + - value: pine + - value: spruce + crop trees: + text: crop trees + annotations: + originally: + tag: originally + value: crop trees (nuts,fruit,christmas trees,nursery trees) + examples: + - value: christmas trees + - value: fruit + - value: nursery trees + - value: nuts + farmstead: + text: farmstead + gravel: + text: gravel + hardwoods: + text: hardwoods + annotations: + originally: + tag: originally + value: hardwoods (e.g. oak,hickory,elm,aspen) + examples: + - value: aspen + - value: elm + - value: hickory + - value: oak + hayland: + text: hayland + horticultural plants: + text: horticultural plants + annotations: + originally: + tag: originally + value: horticultural plants (e.g. tulips) + examples: + - value: tulips + industrial areas: + text: industrial areas + intermixed hardwood and conifers: + text: intermixed hardwood and conifers + marshlands: + text: marshlands + annotations: + originally: + tag: originally + value: marshlands (grass,sedges,rushes) + examples: + - value: grass + - value: rushes + - value: sedgees + meadows: + text: meadows + annotations: + originally: + tag: originally + value: meadows (grasses,alfalfa,fescue,bromegrass,timothy) + examples: + - value: alfalfa + - value: bromegrass + - value: fescue + - value: grasses + - value: timothy + mines/quarries: + text: mines/quarries + mudflats: + text: mudflats + oil waste areas: + text: oil waste areas + pastureland: + text: pastureland + annotations: + originally: + tag: originally + value: pastureland (grasslands used for livestock grazing) + comments: + - grasslands used for livestock grazing + permanent snow or ice: + text: permanent snow or ice + rainforest: + text: rainforest + annotations: + originally: + tag: originally + value: rainforest (evergreen forest receiving greater than 406 cm annual + rainfall) + comments: + - evergreen forest receiving greater than 406 cm annual rainfall + rangeland: + text: rangeland + roads/railroads: + text: roads/railroads + rock: + text: rock + row crops: + text: row crops + saline seeps: + text: saline seeps + salt flats: + text: salt flats + sand: + text: sand + shrub crops: + text: shrub crops + annotations: + originally: + tag: originally + value: shrub crops (blueberries,nursery ornamentals,filberts) + examples: + - value: blueberries + - value: filberts + - value: nursery ornamentals + shrub land: + text: shrub land + annotations: + originally: + tag: originally + value: shrub land (e.g. mesquite,sage-brush,creosote bush,shrub oak,eucalyptus) + examples: + - value: creosote bush + - value: eucalyptus + - value: mesquite + - value: sage-brush + - value: shrub oak + small grains: + text: small grains + successional shrub land: + text: successional shrub land + annotations: + originally: + tag: originally + value: successional shrub land (tree saplings,hazels,sumacs,chokecherry,shrub + dogwoods,blackberries) + examples: + - value: blackberries + - value: chokecherry + - value: hazels + - value: shrub dogwoods + - value: sumacs + - value: tree saplings + swamp: + text: swamp + annotations: + originally: + tag: originally + value: swamp (permanent or semi-permanent water body dominated by woody + plants) + comments: + - permanent or semi-permanent water body dominated by woody plants + tropical: + text: tropical + annotations: + originally: + tag: originally + value: tropical (e.g. mangrove,palms) + examples: + - value: mangrove + - value: palms + tundra: + text: tundra + annotations: + originally: + tag: originally + value: tundra (mosses,lichens) + examples: + - value: lichens + - value: mosses + vegetable crops: + text: vegetable crops + vine crops: + text: vine crops + annotations: + originally: + tag: originally + value: vine crops (grapes) + examples: + - value: grapes + door_mat_enum: + name: door_mat_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - attic: - text: attic - bathroom: - text: bathroom - closet: - text: closet - conference room: - text: conference room - elevator: - text: elevator - examining room: - text: examining room - hallway: - text: hallway - kitchen: - text: kitchen - mail room: - text: mail room - private office: - text: private office - open office: - text: open office - stairwell: - text: stairwell - ',restroom': - text: ',restroom' - lobby: - text: lobby - vestibule: - text: vestibule - mechanical or electrical room: - text: mechanical or electrical room - data center: - text: data center - laboratory_wet: - text: laboratory_wet - laboratory_dry: - text: laboratory_dry - gymnasium: - text: gymnasium - natatorium: - text: natatorium - auditorium: - text: auditorium - lockers: - text: lockers - cafe: - text: cafe - warehouse: - text: warehouse - samp_capt_status_enum: - name: samp_capt_status_enum + aluminum: + text: aluminum + cellular PVC: + text: cellular PVC + engineered plastic: + text: engineered plastic + fiberboard: + text: fiberboard + fiberglass: + text: fiberglass + metal: + text: metal + thermoplastic alloy: + text: thermoplastic alloy + vinyl: + text: vinyl + wood: + text: wood + wood/plastic composite: + text: wood/plastic composite + fao_class_enum: + name: fao_class_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - active surveillance in response to an outbreak: - text: active surveillance in response to an outbreak - active surveillance not initiated by an outbreak: - text: active surveillance not initiated by an outbreak - farm sample: - text: farm sample - market sample: - text: market sample - other: - text: other + Acrisols: + text: Acrisols + Andosols: + text: Andosols + Arenosols: + text: Arenosols + Cambisols: + text: Cambisols + Chernozems: + text: Chernozems + Ferralsols: + text: Ferralsols + Fluvisols: + text: Fluvisols + Gleysols: + text: Gleysols + Greyzems: + text: Greyzems + Gypsisols: + text: Gypsisols + Histosols: + text: Histosols + Kastanozems: + text: Kastanozems + Lithosols: + text: Lithosols + Luvisols: + text: Luvisols + Nitosols: + text: Nitosols + Phaeozems: + text: Phaeozems + Planosols: + text: Planosols + Podzols: + text: Podzols + Podzoluvisols: + text: Podzoluvisols + Rankers: + text: Rankers + Regosols: + text: Regosols + Rendzinas: + text: Rendzinas + Solonchaks: + text: Solonchaks + Solonetz: + text: Solonetz + Vertisols: + text: Vertisols + Yermosols: + text: Yermosols slots: neon_deims_sdr_link: name: neon_deims_sdr_link - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string neon_eco_type: name: neon_eco_type - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string neon_soil_type: name: neon_soil_type - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string ecosystem_path_id: name: ecosystem_path_id description: A unique id representing the GOLD classifers associated with a sample. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string habitat: name: habitat - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string location: name: location - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string community: name: community - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string ncbi_taxonomy_name: name: ncbi_taxonomy_name - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string ncbi_project_name: name: ncbi_project_name - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string sample_collection_site: name: sample_collection_site - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string sample_collection_year: name: sample_collection_year - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer sample_collection_month: name: sample_collection_month - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc status: name: status - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: StatusEnum library_preparation_kit: name: library_preparation_kit - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string extraction_method: name: extraction_method - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc extraction_target: name: extraction_target - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: ExtractionTargetEnum quality_control_report: name: quality_control_report - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: QualityControlReport pcr_cycles: name: pcr_cycles - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc exact_mappings: - OBI:0002475 range: integer sample_mass: name: sample_mass - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: QuantityValue library_type: name: library_type title: library type examples: - value: DNA - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: LibraryTypeEnum zinc: name: zinc @@ -3224,7 +3221,7 @@ slots: title: zinc examples: - value: 2.5 mg/kg - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://www.ornl.gov/content/bio-scales-0 aliases: @@ -3247,7 +3244,7 @@ slots: title: manganese examples: - value: 24.7 mg/kg - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://www.ornl.gov/content/bio-scales-0 aliases: @@ -3270,7 +3267,7 @@ slots: title: ammonium nitrogen examples: - value: 2.3 mg/kg - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://www.ornl.gov/content/bio-scales-0 aliases: @@ -3296,7 +3293,7 @@ slots: - often below some specified limit of detection examples: - value: 0.29 mg/kg - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://www.ornl.gov/content/bio-scales-0 aliases: @@ -3320,7 +3317,7 @@ slots: title: nitrite_nitrogen examples: - value: 1.2 mg/kg - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://www.ornl.gov/content/bio-scales-0 aliases: @@ -3347,7 +3344,7 @@ slots: one pH unit examples: - value: 543 mg/kg - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://www.ornl.gov/content/bio-scales-0 - https://secure.caes.uga.edu/extension/publications/files/pdf/C%20874_5.PDF @@ -3376,7 +3373,7 @@ slots: one pH unit examples: - value: 1575 mg/kg - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://www.ornl.gov/content/bio-scales-0 aliases: @@ -3393,7 +3390,7 @@ slots: subtables and can be reported in_subset: - mixs extension - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - environmental package is_a: attribute @@ -3406,7 +3403,7 @@ slots: - first apply to Biosample - try to apply to all Biosamples in a particular nmdc-server SubmissionMetadata? - applying to a Study may nto be granular enough - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: boolean recommended: true collected_from: @@ -3416,43 +3413,43 @@ slots: - add an OBO slot_uri ? comments: - this illustrates implementing a Biosample relation with a (binary) slot - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc domain: Biosample range: FieldResearchSite biosample_categories: name: biosample_categories title: Categories the biosample belongs to - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: true range: biosample_category_enum date_created: name: date_created description: from database class - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc etl_software_version: name: etl_software_version description: from database class - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc related_identifiers: name: related_identifiers description: Identifiers assigned to a thing that is similar to that which is represented in NMDC. Related identifier are not an identical match and may have some variation. title: Related Identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc notes: name: notes description: from study class - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc canary: name: canary description: a slot that can be added and removed as evidence that schema changes have propagated to other systems - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc ess_dive_datasets: name: ess_dive_datasets description: List of ESS-DIVE dataset DOIs - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: true has_credit_associations: name: has_credit_associations @@ -3465,7 +3462,7 @@ slots: semantics: person should get credit X for their participation in the study' notes: - 'had just been "inlined: true"' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc domain: Study slot_uri: prov:qualifiedAssociation multivalued: true @@ -3474,26 +3471,26 @@ slots: study_image: name: study_image description: Links a study to one or more images. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc domain: Study multivalued: true range: ImageValue inlined: true relevant_protocols: name: relevant_protocols - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: true range: string funding_sources: name: funding_sources - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: true range: string applied_role: name: applied_role deprecated: A credit association may have multiple roles. So, use the applied roles slot. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc domain: CreditAssociation slot_uri: prov:hadRole range: credit enum @@ -3505,7 +3502,7 @@ slots: value: 'Identify all CRediT roles associated with this contributor. CRediT Information: https://info.orcid.org/credit-for-research-contribution ; CRediT: https://credit.niso.org/' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc domain: CreditAssociation multivalued: true range: credit enum @@ -3516,7 +3513,7 @@ slots: - prov:agent takes an Agent object. Is a person value an Agent? Also try to relate to principal investigator slot? could include OBI:0000103 principal investigator role... do we need to define the OBI prefix? - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc domain: CreditAssociation range: PersonValue required: true @@ -3525,7 +3522,7 @@ slots: description: Applies to a property that links a database object to a set of objects. This is necessary in a json document to provide context for a list, and to allow for a single json object that combines multiple object types - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixin: true domain: Database multivalued: true @@ -3534,7 +3531,7 @@ slots: name: biosample_set description: This property links a database object to the set of samples within it. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3544,7 +3541,7 @@ slots: name: study_set description: This property links a database object to the set of studies within it. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3552,14 +3549,14 @@ slots: range: Study field_research_site_set: name: field_research_site_set - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc domain: Database multivalued: true range: FieldResearchSite inlined_as_list: true collecting_biosamples_from_site_set: name: collecting_biosamples_from_site_set - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc domain: Database multivalued: true range: CollectingBiosamplesFromSite @@ -3568,7 +3565,7 @@ slots: name: data_object_set description: This property links a database object to the set of data objects within it. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3577,7 +3574,7 @@ slots: genome_feature_set: name: genome_feature_set description: This property links a database object to the set of all features - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3587,7 +3584,7 @@ slots: name: functional_annotation_set description: This property links a database object to the set of all functional annotations - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3596,7 +3593,7 @@ slots: activity_set: name: activity_set description: This property links a database object to the set of workflow activities. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3606,7 +3603,7 @@ slots: name: mags_activity_set description: This property links a database object to the set of MAGs analysis activities. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3616,7 +3613,7 @@ slots: name: metabolomics_analysis_activity_set description: This property links a database object to the set of metabolomics analysis activities. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3626,7 +3623,7 @@ slots: name: metaproteomics_analysis_activity_set description: This property links a database object to the set of metaproteomics analysis activities. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3636,7 +3633,7 @@ slots: name: metagenome_annotation_activity_set description: This property links a database object to the set of metagenome annotation activities. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3646,7 +3643,7 @@ slots: name: metagenome_assembly_set description: This property links a database object to the set of metagenome assembly activities. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3656,7 +3653,7 @@ slots: name: metagenome_sequencing_activity_set description: This property links a database object to the set of metagenome sequencing activities. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3666,7 +3663,7 @@ slots: name: metatranscriptome_activity_set description: This property links a database object to the set of metatranscriptome analysis activities. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3676,7 +3673,7 @@ slots: name: read_qc_analysis_activity_set description: This property links a database object to the set of read QC analysis activities. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3686,7 +3683,7 @@ slots: name: read_based_taxonomy_analysis_activity_set description: This property links a database object to the set of read based analysis activities. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3696,7 +3693,7 @@ slots: name: nom_analysis_activity_set description: This property links a database object to the set of natural organic matter (NOM) analysis activities. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3706,7 +3703,7 @@ slots: name: omics_processing_set description: This property links a database object to the set of omics processings within it. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3714,7 +3711,7 @@ slots: range: OmicsProcessing pooling_set: name: pooling_set - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3724,7 +3721,7 @@ slots: name: processed_sample_set description: This property links a database object to the set of processed samples within it. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3734,7 +3731,7 @@ slots: name: extraction_set description: This property links a database object to the set of extractions within it. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3744,7 +3741,7 @@ slots: name: library_preparation_set description: This property links a database object to the set of DNA extractions within it. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - library_construction_set mixins: @@ -3761,7 +3758,7 @@ slots: examples: - value: metatranscriptome - value: metagenome - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: ControlledTermValue data_object_type: name: data_object_type @@ -3769,7 +3766,7 @@ slots: examples: - value: FT ICR-MS Analysis Results - value: GC-MS Metabolomics Results - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: file type enum compression_type: name: compression_type @@ -3778,16 +3775,16 @@ slots: - consider enum examples: - value: gzip - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string instrument_name: name: instrument_name description: The name of the instrument that was used for processing the sample. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc gold_path_field: name: gold_path_field description: This is a grouping for any of the gold path fields - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: attribute abstract: true range: string @@ -3804,7 +3801,7 @@ slots: are Environmental, Host-associated, and Engineered. They represent samples collected from a natural environment or from another organism or from engineered environments like bioreactors respectively. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://gold.jgi.doe.gov/help is_a: gold_path_field @@ -3818,7 +3815,7 @@ slots: Ecosystem categories for Host-associated samples can be individual hosts or phyla and for engineered samples it may be manipulated environments like bioreactors, solid waste etc. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://gold.jgi.doe.gov/help is_a: gold_path_field @@ -3833,7 +3830,7 @@ slots: or Thermal springs etc. Ecosystem category Air may have Indoor air or Outdoor air as different Ecosystem Types. In the case of Host-associated samples, ecosystem type can represent Respiratory system, Digestive system, Roots etc. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://gold.jgi.doe.gov/help is_a: gold_path_field @@ -3846,7 +3843,7 @@ slots: - Ecosystem Type Marine (Environmental -> Aquatic -> Marine) is further divided (for example) into Intertidal zone, Coastal, Pelagic, Intertidal zone etc. in the Ecosystem subtype category. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://gold.jgi.doe.gov/help is_a: gold_path_field @@ -3858,44 +3855,44 @@ slots: comments: - Specific ecosystems help to define samples based on very specific characteristics of an environment under the five-level classification system. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://gold.jgi.doe.gov/help is_a: gold_path_field principal_investigator: name: principal_investigator description: Principal Investigator who led the study and/or generated the dataset. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - PI is_a: attribute range: PersonValue doi: name: doi - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: attribute range: AttributeValue add_date: name: add_date description: The date on which the information was added to the database. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string mod_date: name: mod_date description: The last date on which the database information was modified. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string sample_collection_day: name: sample_collection_day - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer sample_collection_hour: name: sample_collection_hour - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer sample_collection_minute: name: sample_collection_minute - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer salinity_category: name: salinity_category @@ -3903,91 +3900,91 @@ slots: halotolerant, hypersaline, huryhaline' notes: - maps to gold:salinity - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://github.com/microbiomedata/nmdc-metadata/pull/297 range: string soluble_iron_micromol: name: soluble_iron_micromol - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string host_name: name: host_name - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string subsurface_depth: name: subsurface_depth - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: QuantityValue proport_woa_temperature: name: proport_woa_temperature - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string biogas_temperature: name: biogas_temperature - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string soil_annual_season_temp: name: soil_annual_season_temp - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string biogas_retention_time: name: biogas_retention_time - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string processing_institution: name: processing_institution description: The organization that processed the sample. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: processing_institution_enum completion_date: name: completion_date - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string metagenome_assembly_parameter: name: metagenome_assembly_parameter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity has_peptide_quantifications: name: has_peptide_quantifications - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity multivalued: true range: PeptideQuantification asm_score: name: asm_score description: A score for comparing metagenomic assembly quality from same sample. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: metagenome_assembly_parameter range: float scaffolds: name: scaffolds description: Total sequence count of all scaffolds. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: metagenome_assembly_parameter range: float scaf_logsum: name: scaf_logsum description: The sum of the (length*log(length)) of all scaffolds, times some constant. Increase the contiguity, the score will increase - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: metagenome_assembly_parameter range: float scaf_powsum: name: scaf_powsum description: Powersum of all scaffolds is the same as logsum except that it uses the sum of (length*(length^P)) for some power P (default P=0.25). - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: metagenome_assembly_parameter range: float scaf_max: name: scaf_max description: Maximum scaffold length. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: metagenome_assembly_parameter range: float scaf_bp: name: scaf_bp description: Total size in bp of all scaffolds. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: metagenome_assembly_parameter range: float scaf_n50: @@ -3995,7 +3992,7 @@ slots: description: Given a set of scaffolds, each with its own length, the N50 count is defined as the smallest number of scaffolds whose length sum makes up half of genome size. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: metagenome_assembly_parameter range: float scaf_n90: @@ -4003,14 +4000,14 @@ slots: description: Given a set of scaffolds, each with its own length, the N90 count is defined as the smallest number of scaffolds whose length sum makes up 90% of genome size. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: metagenome_assembly_parameter range: float scaf_l50: name: scaf_l50 description: Given a set of scaffolds, the L50 is defined as the sequence length of the shortest scaffold at 50% of the total genome length. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: metagenome_assembly_parameter range: float scaf_l90: @@ -4018,38 +4015,38 @@ slots: description: The L90 statistic is less than or equal to the L50 statistic; it is the length for which the collection of all scaffolds of that length or longer contains at least 90% of the sum of the lengths of all scaffolds. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: metagenome_assembly_parameter range: float scaf_n_gt50k: name: scaf_n_gt50k description: Total sequence count of scaffolds greater than 50 KB. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: metagenome_assembly_parameter range: float scaf_l_gt50k: name: scaf_l_gt50k description: Total size in bp of all scaffolds greater than 50 KB. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: metagenome_assembly_parameter range: float scaf_pct_gt50k: name: scaf_pct_gt50k description: Total sequence size percentage of scaffolds greater than 50 KB. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: metagenome_assembly_parameter range: float contigs: name: contigs description: The sum of the (length*log(length)) of all contigs, times some constant. Increase the contiguity, the score will increase - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: metagenome_assembly_parameter range: float contig_bp: name: contig_bp description: Total size in bp of all contigs. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: metagenome_assembly_parameter range: float ctg_n50: @@ -4057,14 +4054,14 @@ slots: description: Given a set of contigs, each with its own length, the N50 count is defined as the smallest number_of_contigs whose length sum makes up half of genome size. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: metagenome_assembly_parameter range: float ctg_l50: name: ctg_l50 description: Given a set of contigs, the L50 is defined as the sequence length of the shortest contig at 50% of the total genome length. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: metagenome_assembly_parameter range: float ctg_n90: @@ -4072,7 +4069,7 @@ slots: description: Given a set of contigs, each with its own length, the N90 count is defined as the smallest number of contigs whose length sum makes up 90% of genome size. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: metagenome_assembly_parameter range: float ctg_l90: @@ -4080,221 +4077,221 @@ slots: description: The L90 statistic is less than or equal to the L50 statistic; it is the length for which the collection of all contigs of that length or longer contains at least 90% of the sum of the lengths of all contigs. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: metagenome_assembly_parameter range: float ctg_logsum: name: ctg_logsum description: Maximum contig length. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: metagenome_assembly_parameter range: float ctg_powsum: name: ctg_powsum description: Powersum of all contigs is the same as logsum except that it uses the sum of (length*(length^P)) for some power P (default P=0.25). - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: metagenome_assembly_parameter range: float ctg_max: name: ctg_max description: Maximum contig length. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: metagenome_assembly_parameter range: float gap_pct: name: gap_pct description: The gap size percentage of all scaffolds. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: metagenome_assembly_parameter range: float gc_std: name: gc_std description: Standard deviation of GC content of all contigs. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: metagenome_assembly_parameter range: float gc_avg: name: gc_avg description: Average of GC content of all contigs. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: metagenome_assembly_parameter range: float num_input_reads: name: num_input_reads description: The sequence count number of input reads for assembly. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: metagenome_assembly_parameter range: float num_aligned_reads: name: num_aligned_reads description: The sequence count number of input reads aligned to assembled contigs. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: metagenome_assembly_parameter range: float read_qc_analysis_statistic: name: read_qc_analysis_statistic - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity mags_list: name: mags_list - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity multivalued: true range: MagBin too_short_contig_num: name: too_short_contig_num - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity range: integer binned_contig_num: name: binned_contig_num - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity range: integer input_contig_num: name: input_contig_num - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity range: integer unbinned_contig_num: name: unbinned_contig_num - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity range: integer low_depth_contig_num: name: low_depth_contig_num - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity range: integer input_read_count: name: input_read_count description: The sequence count number of input reads for QC analysis. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: read_qc_analysis_statistic range: float input_base_count: name: input_base_count description: The nucleotide base count number of input reads for QC analysis. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: read_qc_analysis_statistic range: float output_read_count: name: output_read_count description: After QC analysis sequence count number. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: read_qc_analysis_statistic range: float output_base_count: name: output_base_count description: After QC analysis nucleotide base count number. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: read_qc_analysis_statistic range: float output_read_bases: name: output_read_bases description: TODO - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity range: float input_read_bases: name: input_read_bases description: 'TODO ' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity range: float has_calibration: name: has_calibration description: A reference to a file that holds calibration information. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity range: string has_metabolite_quantifications: name: has_metabolite_quantifications - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity multivalued: true range: MetaboliteQuantification version: name: version - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity total_bases: name: total_bases todos: - this slot needs some basic textual annotations and constraints - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core members_id: name: members_id todos: - this slot needs some basic textual annotations and constraints - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core bin_name: name: bin_name - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core range: string number_of_contig: name: number_of_contig - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core range: integer completeness: name: completeness - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core range: float contamination: name: contamination - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core range: float gene_count: name: gene_count - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core range: integer bin_quality: name: bin_quality - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core range: string num_16s: name: num_16s - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core range: integer num_5s: name: num_5s - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core range: integer num_23s: name: num_23s - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core range: integer num_t_rna: name: num_t_rna - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core range: integer gtdbtk_domain: name: gtdbtk_domain - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core range: string gtdbtk_phylum: name: gtdbtk_phylum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core range: string gtdbtk_class: name: gtdbtk_class - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core range: string gtdbtk_order: name: gtdbtk_order - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core range: string gtdbtk_family: name: gtdbtk_family - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core range: string gtdbtk_genus: name: gtdbtk_genus - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core range: string gtdbtk_species: name: gtdbtk_species - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core range: string language: name: language description: Should use ISO 639-1 code e.g. "en", "fr" - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core range: language code attribute: name: attribute description: 'A attribute of a biosample. Examples: depth, habitat, material. For NMDC, attributes SHOULD be mapped to terms within a MIxS template' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core aliases: - field - property @@ -4306,14 +4303,14 @@ slots: name: has_raw_value description: The value that was specified for an annotation in raw form, i.e. a string. E.g. "2 cm" or "2-4 cm" - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core domain: AttributeValue multivalued: false range: string has_unit: name: has_unit description: Links a QuantityValue to a unit - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core aliases: - scale mappings: @@ -4323,7 +4320,7 @@ slots: has_numeric_value: name: has_numeric_value description: Links a quantity value to a number - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core mappings: - qud:quantityValue - schema:value @@ -4333,18 +4330,18 @@ slots: name: has_minimum_numeric_value description: The minimum value part, expressed as number, of the quantity value when the value covers a range. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core is_a: has_numeric_value has_maximum_numeric_value: name: has_maximum_numeric_value description: The maximum value part, expressed as number, of the quantity value when the value covers a range. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core is_a: has_numeric_value has_boolean_value: name: has_boolean_value description: Links a quantity value to a boolean - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core multivalued: false range: boolean latitude: @@ -4352,7 +4349,7 @@ slots: description: latitude examples: - value: '-33.460524' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core mappings: - schema:latitude domain: GeolocationValue @@ -4363,7 +4360,7 @@ slots: description: longitude examples: - value: '150.168149' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core mappings: - schema:longitude domain: GeolocationValue @@ -4374,38 +4371,38 @@ slots: description: pointer to an ontology class notes: - 'removed ''slot_uri: rdf:type''' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core domain: ControlledTermValue range: OntologyClass inlined: true orcid: name: orcid description: The ORCID of a person. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core domain: PersonValue range: string email: name: email description: An email address for an entity such as a person. This should be the primary email address used. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core slot_uri: schema:email range: string alternate_emails: name: alternate_emails description: One or more other email addresses for an entity. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core range: string profile_image_url: name: profile_image_url description: A url that points to an image of a person. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core domain: PersonValue range: string has_input: name: has_input description: An input to a process. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core aliases: - input domain: NamedThing @@ -4414,7 +4411,7 @@ slots: has_output: name: has_output description: An output biosample to a processing step - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core aliases: - output domain: NamedThing @@ -4424,7 +4421,7 @@ slots: name: part_of description: Links a resource to another resource that either logically or physically includes it. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core aliases: - is part of domain: NamedThing @@ -4434,44 +4431,44 @@ slots: execution_resource: name: execution_resource description: 'Example: NERSC-Cori' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core is_a: attribute url: name: url notes: - See issue 207 - this clashes with the mixs field - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core is_a: attribute range: string display_order: name: display_order description: When rendering information, this attribute to specify the order in which the information should be rendered. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core is_a: attribute git_url: name: git_url description: 'Example: https://github.com/microbiomedata/mg_annotation/releases/tag/0.1' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core is_a: attribute range: string file_size_bytes: name: file_size_bytes description: Size of the file in bytes - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core is_a: attribute range: bytes md5_checksum: name: md5_checksum description: MD5 checksum of file (pre-compressed) - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core is_a: attribute range: string abstract: name: abstract description: The abstract of manuscript/grant associated with the entity; i.e., a summary of the resource. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core exact_mappings: - dcterms:abstract range: string @@ -4479,7 +4476,7 @@ slots: name: keywords description: A list of keywords that used to associate the entity. Keywords SHOULD come from controlled vocabularies, including MESH, ENVO. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core mappings: - dcterms:subject multivalued: true @@ -4488,7 +4485,7 @@ slots: name: objective description: The scientific objectives associated with the entity. It SHOULD correspond to scientific norms for objectives field in a structured abstract. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core mappings: - sio:000337 multivalued: false @@ -4496,95 +4493,95 @@ slots: websites: name: websites description: A list of websites that are associated with the entity. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core multivalued: true range: string publications: name: publications description: A list of publications that are associated with the entity. The publications SHOULD be given using an identifier, such as a DOI or Pubmed ID, if possible. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core multivalued: true range: string highest_similarity_score: name: highest_similarity_score description: 'TODO: Yuri to fill in' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core range: float metabolite_quantified: name: metabolite_quantified description: the specific metabolite identifier - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core range: ChemicalEntity all_proteins: name: all_proteins description: the list of protein identifiers that are associated with the peptide sequence - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core multivalued: true range: GeneProduct best_protein: name: best_protein description: the specific protein identifier most correctly associated with the peptide sequence - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core range: GeneProduct min_q_value: name: min_q_value description: smallest Q-Value associated with the peptide sequence as provided by MSGFPlus tool - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core see_also: - OBI:0001442 range: float peptide_sequence: name: peptide_sequence - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core range: string peptide_spectral_count: name: peptide_spectral_count description: sum of filter passing MS2 spectra associated with the peptide sequence within a given LC-MS/MS data file - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core range: integer peptide_sum_masic_abundance: name: peptide_sum_masic_abundance description: combined MS1 extracted ion chromatograms derived from MS2 spectra associated with the peptide sequence from a given LC-MS/MS data file using the MASIC tool - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core range: integer chemical_formula: name: chemical_formula - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core inchi_key: name: inchi_key notes: - 'key set to false due to rare collisions: Pletnev I, Erin A, McNaught A, Blinov K, Tchekhovskoi D, Heller S (2012) InChIKey collision resistance: an experimental testing. J Cheminform. 4:12' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core inchi: name: inchi - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core peptide_sequence_count: name: peptide_sequence_count - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core protein_spectral_count: name: protein_spectral_count - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core protein_sum_masic_abundance: name: protein_sum_masic_abundance - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core smiles: name: smiles - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core started_at_time: name: started_at_time notes: - 'The regex for ISO-8601 format was taken from here: https://www.myintervals.com/blog/2009/05/20/iso-8601-date-validation-that-doesnt-suck/ It may not be complete, but it is good enough for now.' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/prov + from_schema: https://w3id.org/nmdc/prov mappings: - prov:startedAtTime range: datetime @@ -4594,26 +4591,26 @@ slots: notes: - 'The regex for ISO-8601 format was taken from here: https://www.myintervals.com/blog/2009/05/20/iso-8601-date-validation-that-doesnt-suck/ It may not be complete, but it is good enough for now.' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/prov + from_schema: https://w3id.org/nmdc/prov mappings: - prov:endedAtTime range: datetime pattern: ^([\+-]?\d{4}(?!\d{2}\b))((-?)((0[1-9]|1[0-2])(\3([12]\d|0[1-9]|3[01]))?|W([0-4]\d|5[0-2])(-?[1-7])?|(00[1-9]|0[1-9]\d|[12]\d{2}|3([0-5]\d|6[1-6])))([T\s]((([01]\d|2[0-3])((:?)[0-5]\d)?|24\:?00)([\.,]\d+(?!:))?)?(\17[0-5]\d([\.,]\d+)?)?([zZ]|([\+-])([01]\d|2[0-3]):?([0-5]\d)?)?)?)?$ was_informed_by: name: was_informed_by - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/prov + from_schema: https://w3id.org/nmdc/prov mappings: - prov:wasInformedBy range: Activity was_generated_by: name: was_generated_by - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/prov + from_schema: https://w3id.org/nmdc/prov mappings: - prov:wasGeneratedBy range: Activity used: name: used - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/prov + from_schema: https://w3id.org/nmdc/prov mappings: - prov:used domain: Activity @@ -4632,19 +4629,19 @@ slots: examples: - value: nmdc:mgmag-00-x012.1_7_c1 description: https://github.com/microbiomedata/nmdc-schema/pull/499#discussion_r1018499248 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/basic_slots + from_schema: https://w3id.org/nmdc/basic_slots identifier: true range: uriorcurie required: true name: name: name description: A human readable label for an entity - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/basic_slots + from_schema: https://w3id.org/nmdc/basic_slots range: string description: name: description description: a human-readable description of a thing - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/basic_slots + from_schema: https://w3id.org/nmdc/basic_slots slot_uri: dcterms:description range: string type: @@ -4657,7 +4654,7 @@ slots: examples: - value: nmdc:Biosample - value: nmdc:Study - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/basic_slots + from_schema: https://w3id.org/nmdc/basic_slots range: string title: name: title @@ -4665,7 +4662,7 @@ slots: assigned to it. For example, when extracting study information for GOLD, the GOLD system has assigned a name/label. However, for display purposes, we may also wish the capture the title of the proposal that was used to fund the study. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/basic_slots + from_schema: https://w3id.org/nmdc/basic_slots exact_mappings: - dcterms:title range: string @@ -4673,7 +4670,7 @@ slots: name: alternative_titles description: A list of alternative titles for the entity. The distinction between title and alternative titles is application-specific. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/basic_slots + from_schema: https://w3id.org/nmdc/basic_slots exact_mappings: - dcterms:alternative multivalued: true @@ -4682,7 +4679,7 @@ slots: name: alternative_names description: A list of alternative names used to refer to the entity. The distinction between name and alternative names is application-specific. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/basic_slots + from_schema: https://w3id.org/nmdc/basic_slots exact_mappings: - dcterms:alternative - skos:altLabel @@ -4692,13 +4689,13 @@ slots: name: alternative_descriptions description: A list of alternative descriptions for the entity. The distinction between description and alternative descriptions is application-specific. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/basic_slots + from_schema: https://w3id.org/nmdc/basic_slots multivalued: true range: string alternative_identifiers: name: alternative_identifiers description: A list of alternative identifiers for the entity. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/basic_slots + from_schema: https://w3id.org/nmdc/basic_slots multivalued: true range: uriorcurie pattern: ^[a-zA-Z_][a-zA-Z0-9_]*:[a-zA-Z_][a-zA-Z0-9_]*$ @@ -4711,7 +4708,7 @@ slots: - We are using string representations of dates until all components of our ecosystem can handle ISO 8610 dates - The date should be formatted as YYYY-MM-DD - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/basic_slots + from_schema: https://w3id.org/nmdc/basic_slots range: string end_date: name: end_date @@ -4722,19 +4719,19 @@ slots: - We are using string representations of dates until all components of our ecosystem can handle ISO 8610 dates - The date should be formatted as YYYY-MM-DD - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/basic_slots + from_schema: https://w3id.org/nmdc/basic_slots range: string protocol_link: name: protocol_link - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/basic_slots + from_schema: https://w3id.org/nmdc/basic_slots range: Protocol nucleic_acid_concentration: name: nucleic_acid_concentration - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/basic_slots + from_schema: https://w3id.org/nmdc/basic_slots range: InstrumentValue biomaterial_purity: name: biomaterial_purity - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/basic_slots + from_schema: https://w3id.org/nmdc/basic_slots range: QuantityValue external_database_identifiers: name: external_database_identifiers @@ -4743,7 +4740,7 @@ slots: - had tried ranges of external identifier and string comments: - The value of this field is always a registered CURIE - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers close_mappings: - skos:closeMatch is_a: alternative_identifiers @@ -4760,26 +4757,26 @@ slots: - add is_a or mixin modeling, like other external_database_identifiers - what class would IMG records belong to?! Are they Studies, Biosamples, or something else? - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers is_a: external_database_identifiers pattern: ^img\.taxon:[a-zA-Z0-9_][a-zA-Z0-9_\/\.]*$ igsn_identifiers: name: igsn_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers mixin: true gold_identifiers: name: gold_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers see_also: - https://gold.jgi.doe.gov/ mixin: true emsl_identifiers: name: emsl_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers mixin: true mgnify_identifiers: name: mgnify_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers see_also: - https://www.ebi.ac.uk/metagenomics/ mixin: true @@ -4792,7 +4789,7 @@ slots: the initial submission - 'the first letter of the accession indicates which partner accepted the initial submission: E for ENA, D for DDBJ, or S or N for NCBI.' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers see_also: - https://www.insdc.org/ - https://ena-docs.readthedocs.io/en/latest/submit/general-guide/accessions.html @@ -4804,30 +4801,30 @@ slots: massive_identifiers: name: massive_identifiers description: identifiers for entities according to MASSIVE - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers mixin: true neon_identifiers: name: neon_identifiers description: identifiers for entities according to NEON - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers mixin: true jgi_portal_identifiers: name: jgi_portal_identifiers description: identifiers for entities according to JGI Portal - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers mixin: true gnps_identifiers: name: gnps_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers mixin: true study_identifiers: name: study_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers is_a: external_database_identifiers abstract: true neon_study_identifiers: name: neon_study_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers is_a: study_identifiers mixins: - neon_identifiers @@ -4838,7 +4835,7 @@ slots: - value: https://identifiers.org/insdc.sra:SRP121659 description: Avena fatua rhizosphere microbial communities - H1_Rhizo_Litter_2 metatranscriptome - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers see_also: - https://github.com/bioregistry/bioregistry/issues/109 - https://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=studies @@ -4861,7 +4858,7 @@ slots: - value: https://identifiers.org/bioproject:PRJNA366857 description: Avena fatua rhizosphere microbial communities - H1_Rhizo_Litter_2 metatranscriptome - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers see_also: - https://www.ncbi.nlm.nih.gov/bioproject/ - https://www.ddbj.nig.ac.jp/bioproject/index-e.html @@ -4880,7 +4877,7 @@ slots: - uses the prefix GS (but possibly in a different case) examples: - value: https://identifiers.org/gold:Gs0110115 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers see_also: - https://gold.jgi.doe.gov/studies is_a: study_identifiers @@ -4892,7 +4889,7 @@ slots: description: identifiers for corresponding project in MGnify examples: - value: https://identifiers.org/mgnify.proj:MGYS00005757 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers is_a: study_identifiers mixins: - mgnify_identifiers @@ -4908,7 +4905,7 @@ slots: - this identifier was registered with bioregistry but not identifiers.org examples: - value: gnps.task:4b848c342a4f4abc871bdf8a09a60807 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers see_also: - https://microbiomedata.github.io/nmdc-schema/MetabolomicsAnalysisActivity/ is_a: study_identifiers @@ -4924,7 +4921,7 @@ slots: - value: MASSIVE:MSV000090886 description: MASSIVE id for MASSIVE's metabolomics analysis of Gb0305843, resolvable with prefix http://identifiers.org/massive/ - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers see_also: - https://massive.ucsd.edu/ProteoSAFe/dataset.jsp?task=83574f41458a4b259621d5c32a4d82f9 is_a: study_identifiers @@ -4935,18 +4932,18 @@ slots: name: emsl_project_dois description: A DOI that resolves to a EMSL Research Campaign page. title: EMSL Project DOI - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers is_a: study_identifiers mixins: - emsl_identifiers biosample_identifiers: name: biosample_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers is_a: external_database_identifiers abstract: true neon_biosample_identifiers: name: neon_biosample_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers is_a: biosample_identifiers mixins: - neon_identifiers @@ -4955,7 +4952,7 @@ slots: description: identifiers for corresponding sample in GOLD examples: - value: https://identifiers.org/gold:Gb0312930 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers is_a: biosample_identifiers mixins: - gold_identifiers @@ -4968,7 +4965,7 @@ slots: - value: https://identifiers.org/biosample:SAMD00212331 description: I13_N_5-10 sample from Soil fungal diversity along elevational gradients - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers see_also: - https://github.com/bioregistry/bioregistry/issues/108 - https://www.ebi.ac.uk/biosamples/ @@ -4993,7 +4990,7 @@ slots: - value: https://identifiers.org/insdc.sra:DRS166340 description: I13_N_5-10 sample from Soil fungal diversity along elevational gradients - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers is_a: biosample_identifiers mixins: - insdc_identifiers @@ -5008,7 +5005,7 @@ slots: - removed "planned" once NEXUS is online - make an emsl identifiers mixin - determine real expansion for emsl prefix - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers is_a: biosample_identifiers mixins: - emsl_identifiers @@ -5016,13 +5013,13 @@ slots: name: igsn_biosample_identifiers description: A list of identifiers for the biosample from the IGSN database. title: IGSN Biosample Identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers is_a: biosample_identifiers mixins: - igsn_identifiers omics_processing_identifiers: name: omics_processing_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers is_a: external_database_identifiers abstract: true gold_sequencing_project_identifiers: @@ -5030,21 +5027,21 @@ slots: description: identifiers for corresponding sequencing project in GOLD examples: - value: https://identifiers.org/gold:Gp0108335 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers is_a: omics_processing_identifiers mixins: - gold_identifiers pattern: ^GOLD:Gp[0-9]+$ insdc_experiment_identifiers: name: insdc_experiment_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers is_a: external_database_identifiers mixins: - insdc_identifiers pattern: ^insdc.sra:(E|D|S)RX[0-9]{6,}$ analysis_identifiers: name: analysis_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers is_a: external_database_identifiers abstract: true gold_analysis_project_identifiers: @@ -5052,7 +5049,7 @@ slots: description: identifiers for corresponding analysis project in GOLD examples: - value: https://identifiers.org/gold:Ga0526289 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers is_a: analysis_identifiers mixins: - gold_identifiers @@ -5065,7 +5062,7 @@ slots: - value: https://www.ebi.ac.uk/metagenomics/runs/DRR218479 description: Illumina MiSeq paired end sequencing of SAMD00212331 - value: https://www.ebi.ac.uk/ena/browser/view/ERR436051 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers is_a: analysis_identifiers mixins: - insdc_identifiers @@ -5077,17 +5074,17 @@ slots: examples: - value: https://www.ebi.ac.uk/metagenomics/analyses/MGYA00002270 description: combined analyses (taxonomic, functional) of sample ERS438107 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers is_a: analysis_identifiers mixins: - mgnify_identifiers assembly_identifiers: name: assembly_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers abstract: true insdc_assembly_identifiers: name: insdc_assembly_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers is_a: assembly_identifiers mixins: - insdc_identifiers @@ -5095,34 +5092,34 @@ slots: dissolving_activity_set: name: dissolving_activity_set title: dissolving activity set - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep multivalued: true range: DissolvingActivity inlined_as_list: true material_sample_set: name: material_sample_set title: material sample set - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep multivalued: true range: MaterialSample inlined_as_list: true material_sampling_activity_set: name: material_sampling_activity_set title: material sampling activity set - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep multivalued: true range: MaterialSamplingActivity inlined_as_list: true reaction_activity_set: name: reaction_activity_set - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep multivalued: true range: ReactionActivity inlined_as_list: true dissolution_aided_by: name: dissolution_aided_by title: dissolution aided by - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep aliases: - shaker range: LabDevice @@ -5130,14 +5127,14 @@ slots: dissolution_reagent: name: dissolution_reagent title: dissolution reagent - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep aliases: - solvent range: SolventEnum dissolution_volume: name: dissolution_volume title: dissolution volume - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep aliases: - volume range: QuantityValue @@ -5145,7 +5142,7 @@ slots: dissolved_in: name: dissolved_in title: dissolved in - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep aliases: - container range: MaterialContainer @@ -5153,24 +5150,24 @@ slots: material_input: name: material_input title: material input - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep range: MaterialSample material_output: name: material_output title: material output - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep range: MaterialSample device_type: name: device_type title: device type - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep aliases: - shaker type range: DeviceTypeEnum activity_speed: name: activity_speed title: activity speed - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep aliases: - shake_speed range: QuantityValue @@ -5179,13 +5176,13 @@ slots: name: activity_temperature todos: - constrain units - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep range: QuantityValue inlined: true activity_time: name: activity_time title: activity time - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep aliases: - shake_time range: QuantityValue @@ -5193,50 +5190,50 @@ slots: container_size: name: container_size title: container size - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep range: QuantityValue inlined: true container_type: name: container_type title: container type - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep range: ContainerTypeEnum amount_collected: name: amount_collected title: amount collected - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep range: QuantityValue inlined: true collected_into: name: collected_into title: collected into - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep sampling_method: name: sampling_method title: sampling method - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep range: SamplingMethodEnum reaction_aided_by: name: reaction_aided_by title: reaction aided by - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep aliases: - shaker range: LabDevice inlined: true reaction_temperature: name: reaction_temperature - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep reaction_time: name: reaction_time - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep analysis_type: name: analysis_type description: Select all the data types associated or available for this biosample title: analysis/data type examples: - value: metagenomics; metabolomics; proteomics - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/sample_id + from_schema: https://w3id.org/nmdc/portal/sample_id see_also: - MIxS:investigation_type rank: 3 @@ -5257,7 +5254,7 @@ slots: to a new vial and generated a new sample)' examples: - value: IGSN:DSJ0284 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/sample_id + from_schema: https://w3id.org/nmdc/portal/sample_id rank: 5 string_serialization: '{text}:{text}' multivalued: true @@ -5277,7 +5274,7 @@ slots: are all acceptable. examples: - value: 2021-04-15, 2021-04 and 2021 are all acceptable. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/mixs_inspired + from_schema: https://w3id.org/nmdc/portal/mixs_inspired see_also: - MIxS:collection_date rank: 2 @@ -5295,7 +5292,7 @@ slots: - 'Time should be entered as HH:MM(:SS) in GMT. See here for a converter: https://www.worldtimebuddy.com/pst-to-gmt-converter' examples: - value: 13:33 or 13:33:55 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/mixs_inspired + from_schema: https://w3id.org/nmdc/portal/mixs_inspired see_also: - MIxS:collection_date rank: 1 @@ -5314,7 +5311,7 @@ slots: - 'Time should be entered as HH:MM(:SS) in GMT. See here for a converter: https://www.worldtimebuddy.com/pst-to-gmt-converter' examples: - value: 13:33 or 13:33:55 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/mixs_inspired + from_schema: https://w3id.org/nmdc/portal/mixs_inspired see_also: - MIxS:collection_date rank: 3 @@ -5333,7 +5330,7 @@ slots: data collection template. examples: - value: 'experimental treatment: value' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/mixs_inspired + from_schema: https://w3id.org/nmdc/portal/mixs_inspired see_also: - MIxS:experimental_factor|additional_info rank: 7 @@ -5349,7 +5346,7 @@ slots: examples: - value: C18 - value: Basix PES, 13-100-106 FisherSci - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/mixs_inspired + from_schema: https://w3id.org/nmdc/portal/mixs_inspired see_also: - MIxS:filter_type rank: 6 @@ -5368,7 +5365,7 @@ slots: examples: - value: 13C glucose - value: H218O - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/mixs_inspired + from_schema: https://w3id.org/nmdc/portal/mixs_inspired see_also: - MIxS:chem_administration rank: 16 @@ -5386,7 +5383,7 @@ slots: examples: - value: https://doi.org/10.1016/0038-0717(87)90052-6 - value: https://doi.org/10.1016/0038-0717(87)90052-6 | https://www.sciencedirect.com/science/article/abs/pii/0038071787900526 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/mixs_inspired + from_schema: https://w3id.org/nmdc/portal/mixs_inspired see_also: - MIxS:micro_biomass_meth rank: 11 @@ -5402,7 +5399,7 @@ slots: examples: - value: https://doi.org/10.1016/0038-0717(87)90052-6 - value: https://doi.org/10.1016/0038-0717(87)90052-6 | https://www.sciencedirect.com/science/article/abs/pii/0038071787900526 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/mixs_inspired + from_schema: https://w3id.org/nmdc/portal/mixs_inspired see_also: - MIxS:micro_biomass_meth rank: 13 @@ -5418,7 +5415,7 @@ slots: and method are required examples: - value: 0.05 ug C/g dry soil - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/mixs_inspired + from_schema: https://w3id.org/nmdc/portal/mixs_inspired see_also: - MIxS:microbial_biomass rank: 10 @@ -5434,7 +5431,7 @@ slots: and method are required examples: - value: 0.05 ug N/g dry soil - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/mixs_inspired + from_schema: https://w3id.org/nmdc/portal/mixs_inspired see_also: - MIxS:microbial_biomass rank: 12 @@ -5448,7 +5445,7 @@ slots: title: non-microbial biomass examples: - value: insect 0.23 ug; plant 1g - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/mixs_inspired + from_schema: https://w3id.org/nmdc/portal/mixs_inspired see_also: - MIxS:biomass|microbial_biomass rank: 8 @@ -5462,7 +5459,7 @@ slots: - required if "non-microbial biomass" is provided examples: - value: https://doi.org/10.1038/s41467-021-26181-3 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/mixs_inspired + from_schema: https://w3id.org/nmdc/portal/mixs_inspired see_also: - MIxS:microbial_biomass rank: 9 @@ -5476,7 +5473,7 @@ slots: - required if "org_nitro" is provided examples: - value: https://doi.org/10.1016/0038-0717(85)90144-0 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/mixs_inspired + from_schema: https://w3id.org/nmdc/portal/mixs_inspired see_also: - MIxS:org_nitro|tot_nitro_cont_meth rank: 14 @@ -5490,7 +5487,7 @@ slots: comments: - This is an open text field to provide any treatments that cannot be captured in the provided slots. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/mixs_inspired + from_schema: https://w3id.org/nmdc/portal/mixs_inspired see_also: - MIxS:additional_info rank: 15 @@ -5509,7 +5506,7 @@ slots: are all acceptable. examples: - value: 2021-04-15, 2021-04 and 2021 are all acceptable. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/mixs_inspired + from_schema: https://w3id.org/nmdc/portal/mixs_inspired see_also: - MIxS:collection_date rank: 4 @@ -5527,7 +5524,7 @@ slots: - 'Time should be entered as HH:MM(:SS) in GMT. See here for a converter: https://www.worldtimebuddy.com/pst-to-gmt-converter' examples: - value: 13:33 or 13:33:55 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/mixs_inspired + from_schema: https://w3id.org/nmdc/portal/mixs_inspired see_also: - MIxS:collection_date rank: 5 @@ -5541,7 +5538,7 @@ slots: - Note DNase treatment is required for all RNA samples. examples: - value: 'no' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metatranscriptomics + from_schema: https://w3id.org/nmdc/portal/jgi_metatranscriptomics rank: 13 slot_group: JGI-Metatranscriptomics range: YesNoEnum @@ -5554,7 +5551,7 @@ slots: values have been pre-filled. examples: - value: '504000' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metatranscriptomics + from_schema: https://w3id.org/nmdc/portal/jgi_metatranscriptomics rank: 19 string_serialization: '{text}' slot_group: JGI-Metatranscriptomics @@ -5567,7 +5564,7 @@ slots: - Recommended value is between 1 and 3. examples: - value: '2.02' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metatranscriptomics + from_schema: https://w3id.org/nmdc/portal/jgi_metatranscriptomics rank: 7 is_a: biomaterial_purity string_serialization: '{float}' @@ -5582,7 +5579,7 @@ slots: - Recommended value is between 1 and 3. examples: - value: '2.02' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metatranscriptomics + from_schema: https://w3id.org/nmdc/portal/jgi_metatranscriptomics rank: 8 is_a: biomaterial_purity string_serialization: '{float}' @@ -5595,7 +5592,7 @@ slots: title: RNA collection site examples: - value: untreated pond water - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metatranscriptomics + from_schema: https://w3id.org/nmdc/portal/jgi_metatranscriptomics rank: 15 string_serialization: '{text}' slot_group: JGI-Metatranscriptomics @@ -5608,7 +5605,7 @@ slots: a fluorometric method. Acceptable values are 0-2000. examples: - value: '100' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metatranscriptomics + from_schema: https://w3id.org/nmdc/portal/jgi_metatranscriptomics see_also: - nmdc:nucleic_acid_concentration rank: 5 @@ -5624,7 +5621,7 @@ slots: title: RNA container type examples: - value: plate - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metatranscriptomics + from_schema: https://w3id.org/nmdc/portal/jgi_metatranscriptomics rank: 10 slot_group: JGI-Metatranscriptomics range: JgiContTypeEnum @@ -5640,7 +5637,7 @@ slots: - For partial plates, fill by columns, like B1-G1,A2-H2,A3-D3 (NOT A2-A11,B1-B8). examples: - value: B2 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metatranscriptomics + from_schema: https://w3id.org/nmdc/portal/jgi_metatranscriptomics rank: 11 string_serialization: '{96 well plate pos}' slot_group: JGI-Metatranscriptomics @@ -5654,7 +5651,7 @@ slots: in a plate should have the same plate label. examples: - value: Pond_MT_041618 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metatranscriptomics + from_schema: https://w3id.org/nmdc/portal/jgi_metatranscriptomics rank: 9 string_serialization: '{text < 20 characters}' slot_group: JGI-Metatranscriptomics @@ -5665,7 +5662,7 @@ slots: title: RNA isolation method examples: - value: phenol/chloroform extraction - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metatranscriptomics + from_schema: https://w3id.org/nmdc/portal/jgi_metatranscriptomics rank: 16 string_serialization: '{text}' slot_group: JGI-Metatranscriptomics @@ -5678,7 +5675,7 @@ slots: examples: - value: expected to contain microbes (59%) fungi (30%), viruses (10%), tadpoles (1%) - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metatranscriptomics + from_schema: https://w3id.org/nmdc/portal/jgi_metatranscriptomics rank: 14 string_serialization: '{text}' slot_group: JGI-Metatranscriptomics @@ -5691,7 +5688,7 @@ slots: values have been pre-filled. examples: - value: John Jones - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metatranscriptomics + from_schema: https://w3id.org/nmdc/portal/jgi_metatranscriptomics rank: 18 string_serialization: '{text}' slot_group: JGI-Metatranscriptomics @@ -5704,7 +5701,7 @@ slots: values have been pre-filled. examples: - value: '187654' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metatranscriptomics + from_schema: https://w3id.org/nmdc/portal/jgi_metatranscriptomics rank: 3 string_serialization: '{text}' slot_group: JGI-Metatranscriptomics @@ -5715,7 +5712,7 @@ slots: title: RNA sample format examples: - value: Water - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metatranscriptomics + from_schema: https://w3id.org/nmdc/portal/jgi_metatranscriptomics rank: 12 slot_group: JGI-Metatranscriptomics range: rna_sample_format_enum @@ -5727,7 +5724,7 @@ slots: title: RNA sample name examples: - value: JGI_pond_041618 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metatranscriptomics + from_schema: https://w3id.org/nmdc/portal/jgi_metatranscriptomics rank: 4 string_serialization: '{text}' slot_group: JGI-Metatranscriptomics @@ -5742,7 +5739,7 @@ slots: values have been pre-filled. examples: - value: '1191234' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metatranscriptomics + from_schema: https://w3id.org/nmdc/portal/jgi_metatranscriptomics rank: 1 string_serialization: '{text}' slot_group: JGI-Metatranscriptomics @@ -5755,7 +5752,7 @@ slots: values have been pre-filled. examples: - value: Jane Johnson - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metatranscriptomics + from_schema: https://w3id.org/nmdc/portal/jgi_metatranscriptomics rank: 17 string_serialization: '{text}' slot_group: JGI-Metatranscriptomics @@ -5768,7 +5765,7 @@ slots: values have been pre-filled. examples: - value: JGI Pond metatranscriptomics - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metatranscriptomics + from_schema: https://w3id.org/nmdc/portal/jgi_metatranscriptomics rank: 2 string_serialization: '{text}' slot_group: JGI-Metatranscriptomics @@ -5782,7 +5779,7 @@ slots: has been granted by a project manager examples: - value: '25' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metatranscriptomics + from_schema: https://w3id.org/nmdc/portal/jgi_metatranscriptomics rank: 6 string_serialization: '{float}' slot_group: JGI-Metatranscriptomics @@ -5798,7 +5795,7 @@ slots: - Recommended value is between 1 and 3. examples: - value: '2.02' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metagenomics + from_schema: https://w3id.org/nmdc/portal/jgi_metagenomics rank: 7 is_a: biomaterial_purity string_serialization: '{float}' @@ -5813,7 +5810,7 @@ slots: - Recommended value is between 1 and 3. examples: - value: '2.02' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metagenomics + from_schema: https://w3id.org/nmdc/portal/jgi_metagenomics rank: 8 is_a: biomaterial_purity string_serialization: '{float}' @@ -5826,7 +5823,7 @@ slots: title: DNA collection site examples: - value: untreated pond water - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metagenomics + from_schema: https://w3id.org/nmdc/portal/jgi_metagenomics rank: 15 string_serialization: '{text}' slot_group: JGI-Metagenomics @@ -5839,7 +5836,7 @@ slots: a fluorometric method. Acceptable values are 0-2000. examples: - value: '100' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metagenomics + from_schema: https://w3id.org/nmdc/portal/jgi_metagenomics see_also: - nmdc:nucleic_acid_concentration rank: 5 @@ -5855,7 +5852,7 @@ slots: title: DNA container type examples: - value: plate - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metagenomics + from_schema: https://w3id.org/nmdc/portal/jgi_metagenomics rank: 10 slot_group: JGI-Metagenomics range: JgiContTypeEnum @@ -5871,7 +5868,7 @@ slots: - For partial plates, fill by columns, like B1-G1,A2-H2,A3-D3 (NOT A2-A11,B1-B8). examples: - value: B2 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metagenomics + from_schema: https://w3id.org/nmdc/portal/jgi_metagenomics rank: 11 string_serialization: '{96 well plate pos}' slot_group: JGI-Metagenomics @@ -5885,7 +5882,7 @@ slots: in a plate should have the same plate label. examples: - value: Pond_MT_041618 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metagenomics + from_schema: https://w3id.org/nmdc/portal/jgi_metagenomics rank: 9 string_serialization: '{text < 20 characters}' slot_group: JGI-Metagenomics @@ -5897,7 +5894,7 @@ slots: - Note DNase treatment is required for all RNA samples. examples: - value: 'no' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metagenomics + from_schema: https://w3id.org/nmdc/portal/jgi_metagenomics rank: 13 slot_group: JGI-Metagenomics range: YesNoEnum @@ -5908,7 +5905,7 @@ slots: title: DNA isolation method examples: - value: phenol/chloroform extraction - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metagenomics + from_schema: https://w3id.org/nmdc/portal/jgi_metagenomics rank: 16 string_serialization: '{text}' slot_group: JGI-Metagenomics @@ -5921,7 +5918,7 @@ slots: examples: - value: expected to contain microbes (59%) fungi (30%), viruses (10%), tadpoles (1%) - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metagenomics + from_schema: https://w3id.org/nmdc/portal/jgi_metagenomics rank: 14 string_serialization: '{text}' slot_group: JGI-Metagenomics @@ -5934,7 +5931,7 @@ slots: values have been pre-filled. examples: - value: John Jones - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metagenomics + from_schema: https://w3id.org/nmdc/portal/jgi_metagenomics rank: 18 string_serialization: '{text}' slot_group: JGI-Metagenomics @@ -5951,7 +5948,7 @@ slots: values have been pre-filled. examples: - value: '187654' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metagenomics + from_schema: https://w3id.org/nmdc/portal/jgi_metagenomics rank: 3 string_serialization: '{text}' slot_group: JGI-Metagenomics @@ -5962,7 +5959,7 @@ slots: title: DNA sample format examples: - value: Water - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metagenomics + from_schema: https://w3id.org/nmdc/portal/jgi_metagenomics rank: 12 slot_group: JGI-Metagenomics range: dna_sample_format_enum @@ -5974,7 +5971,7 @@ slots: title: DNA sample name examples: - value: JGI_pond_041618 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metagenomics + from_schema: https://w3id.org/nmdc/portal/jgi_metagenomics rank: 4 string_serialization: '{text}' slot_group: JGI-Metagenomics @@ -5987,7 +5984,7 @@ slots: values have been pre-filled. examples: - value: '1191234' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metagenomics + from_schema: https://w3id.org/nmdc/portal/jgi_metagenomics rank: 1 string_serialization: '{text}' slot_group: JGI-Metagenomics @@ -6000,7 +5997,7 @@ slots: values have been pre-filled. examples: - value: Jane Johnson - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metagenomics + from_schema: https://w3id.org/nmdc/portal/jgi_metagenomics rank: 17 string_serialization: '{text}' slot_group: JGI-Metagenomics @@ -6013,7 +6010,7 @@ slots: values have been pre-filled. examples: - value: JGI Pond metagenomics - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metagenomics + from_schema: https://w3id.org/nmdc/portal/jgi_metagenomics rank: 2 string_serialization: '{text}' slot_group: JGI-Metagenomics @@ -6027,7 +6024,7 @@ slots: has been granted by a project manager examples: - value: '25' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metagenomics + from_schema: https://w3id.org/nmdc/portal/jgi_metagenomics rank: 6 string_serialization: '{float}' slot_group: JGI-Metagenomics @@ -6043,7 +6040,7 @@ slots: values have been pre-filled. examples: - value: '504000' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metagenomics + from_schema: https://w3id.org/nmdc/portal/jgi_metagenomics rank: 19 string_serialization: '{text}' slot_group: JGI-Metagenomics @@ -6059,7 +6056,7 @@ slots: - Enter a temperature in celsius. Numeric portion only. examples: - value: '-80' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/emsl + from_schema: https://w3id.org/nmdc/portal/emsl rank: 4 string_serialization: '{float}' slot_group: EMSL @@ -6068,7 +6065,7 @@ slots: name: project_id description: Proposal IDs or names associated with dataset title: project ID - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/emsl + from_schema: https://w3id.org/nmdc/portal/emsl rank: 1 string_serialization: '{text}' slot_group: EMSL @@ -6079,7 +6076,7 @@ slots: title: replicate number comments: - This will guide staff in ensuring your samples are blocked & randomized correctly - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/emsl + from_schema: https://w3id.org/nmdc/portal/emsl rank: 6 string_serialization: '{integer}' slot_group: EMSL @@ -6096,7 +6093,7 @@ slots: - value: 15 g - value: 100 uL - value: 5 mL - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/emsl + from_schema: https://w3id.org/nmdc/portal/emsl rank: 3 string_serialization: '{float} {unit}' slot_group: EMSL @@ -6109,7 +6106,7 @@ slots: - This can vary from 'environmental package' if the sample is an extraction. examples: - value: water extracted soil - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/emsl + from_schema: https://w3id.org/nmdc/portal/emsl rank: 2 slot_group: EMSL range: sample_type_enum @@ -6124,7 +6121,7 @@ slots: to EMSL for analyses. examples: - value: '2' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/emsl + from_schema: https://w3id.org/nmdc/portal/emsl rank: 5 string_serialization: '{integer}' slot_group: EMSL @@ -17112,29 +17109,34 @@ slots: name: sequencing field from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml abstract: true - has numeric value: - name: has numeric value + environment field: + name: environment field + description: field describing environmental aspect of a sample from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - owner: QuantityValue - range: double + abstract: true investigation field: name: investigation field description: field describing aspect of the investigation/study to which the sample belongs from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml abstract: true - core field: - name: core field - description: basic fields + has numeric value: + name: has numeric value from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - abstract: true + owner: QuantityValue + range: double + has raw value: + name: has raw value + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + string_serialization: '{has numeric value} {has unit}' + owner: QuantityValue nucleic acid sequence source field: name: nucleic acid sequence source field from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml abstract: true - environment field: - name: environment field - description: field describing environmental aspect of a sample + core field: + name: core field + description: basic fields from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml abstract: true has unit: @@ -17142,22 +17144,17 @@ slots: description: Example "m" from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml owner: QuantityValue - has raw value: - name: has raw value - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - string_serialization: '{has numeric value} {has unit}' - owner: QuantityValue chemical: name: chemical description: from reaction participant class - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation stoichiometry: name: stoichiometry description: from reaction participant class - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation subject: name: subject - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation range: GeneProduct has_function: name: has_function @@ -17165,11 +17162,11 @@ slots: - the range for has_function was asserted as functional_annotation_term/FunctionalAnnotationTerm, - but is actually taking string arguments in MongoDB, - and those are frequently fulltext, not CURIEs. MAM 2021-06-23 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation range: string has_participants: name: has_participants - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation exact_mappings: - RO:0000057 abstract: true @@ -17181,64 +17178,64 @@ slots: genomes, plasmids, and some viral genomes), the requirement for start to be less than or equal to end is satisfied by making end = the position of the end + the length of the landmark feature. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation range: integer minimum_value: 1 seqid: name: seqid todos: - change range from string to object - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation strand: name: strand todos: - set the range to an enum? - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation direction: name: direction - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation encodes: name: encodes - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation end: name: end - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation feature_type: name: feature_type - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation has_part: name: has_part - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation is_balanced: name: is_balanced - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation is_diastereoselective: name: is_diastereoselective - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation is_fully_characterized: name: is_fully_characterized - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation is_stereo: name: is_stereo - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation is_transport: name: is_transport - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation left_participants: name: left_participants - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation phase: name: phase - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation right_participants: name: right_participants - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation smarts_string: name: smarts_string - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation start: name: start - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation classes: Database: name: Database @@ -17246,7 +17243,7 @@ classes: need to correspond to an actual managed database top level holder class. When translated to JSON-Schema this is the 'root' object. It should contain pointers to other objects of interest - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - NMDC metadata object slots: @@ -17294,7 +17291,7 @@ classes: tree_root: true Pooling: name: Pooling - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: PlannedProcess slot_usage: has_input: @@ -17312,7 +17309,7 @@ classes: interpolated: true Extraction: name: Extraction - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: PlannedProcess slots: - extraction_method @@ -17336,13 +17333,13 @@ classes: interpolated: true Protocol: name: Protocol - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc slots: - url - name QualityControlReport: name: QualityControlReport - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc slots: - status - name @@ -17350,7 +17347,7 @@ classes: name: LibraryPreparation comments: - OBI:0000711 specifies a DNA input (but not ONLY a DNA input) - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - LibraryConstruction close_mappings: @@ -17386,7 +17383,7 @@ classes: the same plant were obtained at the same site. In this case, the site would correspond to one tree. - might correspond to GOLD's identifier on a page like https://gold.jgi.doe.gov/biosample?id=Gb0305833 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - research plot is_a: Site @@ -17414,7 +17411,7 @@ classes: title: Collecting Biosamples From Site comments: - this illustrates implementing a Biosample relation with a process class - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: PlannedProcess slot_usage: has_input: @@ -17442,7 +17439,7 @@ classes: - removed id_prefixes value of GOLD, since we are now using pattern-based id validation in_subset: - data object subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: NamedThing slots: - file_size_bytes @@ -17481,7 +17478,7 @@ classes: id validation in_subset: - sample subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample - material sample @@ -18568,7 +18565,7 @@ classes: but no longer for the Study.id in_subset: - sample subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - proposal - research proposal @@ -18692,7 +18689,7 @@ classes: description: A process that takes one or more biosamples as inputs and generates one or as outputs. Examples of outputs include samples cultivated from another sample or data objects created by instruments runs. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - material processing broad_mappings: @@ -18723,7 +18720,7 @@ classes: - The ID prefix for objects coming from GOLD will be gold:Gp in_subset: - sample subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - omics assay - sequencing project @@ -18772,7 +18769,7 @@ classes: will be at least a slot for a CRediT Contributor Role (https://casrai.org/credit/) and for a person value Specifically see the associated researchers tab on the NMDC_SampleMetadata-V4_CommentsForUpdates at https://docs.google.com/spreadsheets/d/1INlBo5eoqn2efn4H2P2i8rwRBtnbDVTqXrochJEAPko/edit#gid=0 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - study role - credit table @@ -18801,7 +18798,7 @@ classes: and stop times, potentially with different inputs and outputs in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity aliases: - analysis is_a: Activity @@ -18855,7 +18852,7 @@ classes: relevant to NMDC in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: WorkflowExecutionActivity slots: - type @@ -18898,7 +18895,7 @@ classes: name: MetatranscriptomeAssembly in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: WorkflowExecutionActivity slots: - asm_score @@ -18942,7 +18939,7 @@ classes: annotation of assembled metagenome contigs in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: WorkflowExecutionActivity slots: - type @@ -18958,7 +18955,7 @@ classes: name: MetatranscriptomeAnnotationActivity in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: WorkflowExecutionActivity slots: - type @@ -18976,7 +18973,7 @@ classes: activity. in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: WorkflowExecutionActivity slots: - type @@ -18994,7 +18991,7 @@ classes: title: Metagenome-Assembled Genome analysis activity in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: WorkflowExecutionActivity slots: - type @@ -19018,7 +19015,7 @@ classes: title: Metagenome sequencing activity in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: WorkflowExecutionActivity slot_usage: id: @@ -19036,7 +19033,7 @@ classes: title: Read quality control analysis activity in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: WorkflowExecutionActivity slots: - type @@ -19061,7 +19058,7 @@ classes: title: Read based analysis activity in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: WorkflowExecutionActivity slots: - type @@ -19076,7 +19073,7 @@ classes: name: MetabolomicsAnalysisActivity in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: WorkflowExecutionActivity slots: - has_calibration @@ -19096,7 +19093,7 @@ classes: name: MetaproteomicsAnalysisActivity in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: WorkflowExecutionActivity slots: - has_peptide_quantifications @@ -19115,7 +19112,7 @@ classes: name: NomAnalysisActivity in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: WorkflowExecutionActivity slots: - has_calibration @@ -19133,7 +19130,7 @@ classes: NamedThing: name: NamedThing description: a databased entity or concept/class - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core abstract: true slots: - id @@ -19143,7 +19140,7 @@ classes: MaterialEntity: name: MaterialEntity title: Material Entity - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core aliases: - Material - Physical entity @@ -19152,7 +19149,7 @@ classes: ProcessedSample: name: ProcessedSample title: Processed Sample - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core is_a: MaterialEntity slots: - biomaterial_purity @@ -19170,7 +19167,7 @@ classes: AnalyticalSample: name: AnalyticalSample title: Analytical Sample - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core is_a: MaterialEntity slot_usage: id: @@ -19184,7 +19181,7 @@ classes: title: Site comments: - BCO sample collection site ? - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core is_a: MaterialEntity abstract: true slot_usage: @@ -19197,7 +19194,7 @@ classes: PlannedProcess: name: PlannedProcess title: Planned Process - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core is_a: NamedThing abstract: true slots: @@ -19212,17 +19209,17 @@ classes: notes: - The identifiers for terms from external ontologies can't have their ids constrained to the nmdc namespace - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core is_a: NamedThing EnvironmentalMaterialTerm: name: EnvironmentalMaterialTerm - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core is_a: OntologyClass AttributeValue: name: AttributeValue description: The value for any value of a attribute for a sample. This object can hold both the un-normalized atomic value and the structured value - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core slots: - has_raw_value - was_generated_by @@ -19232,7 +19229,7 @@ classes: description: An optional string that specified the type of object. InstrumentValue: name: InstrumentValue - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core is_a: AttributeValue slots: - has_unit @@ -19241,7 +19238,7 @@ classes: QuantityValue: name: QuantityValue description: A simple quantity, e.g. 2cm - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core mappings: - schema:QuantityValue is_a: AttributeValue @@ -19265,7 +19262,7 @@ classes: ImageValue: name: ImageValue description: An attribute value representing an image. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core is_a: AttributeValue slots: - url @@ -19277,7 +19274,7 @@ classes: todos: - add additional fields e.g for institution - deprecate "has_raw_value" in favor of "name" - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core is_a: AttributeValue slots: - orcid @@ -19314,7 +19311,7 @@ classes: is optional. MagBin: name: MagBin - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core slots: - bin_name - bin_quality @@ -19340,7 +19337,7 @@ classes: name: Instrument description: A material entity that is designed to perform a function in a scientific investigation, but is not a reagent[OBI]. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core aliases: - device exact_mappings: @@ -19357,7 +19354,7 @@ classes: name: MetaboliteQuantification description: This is used to link a metabolomics analysis workflow to a specific metabolite - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core slots: - alternative_identifiers - highest_similarity_score @@ -19366,7 +19363,7 @@ classes: name: PeptideQuantification description: This is used to link a metaproteomics analysis workflow to a specific peptide sequence and related information - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core slots: - all_proteins - best_protein @@ -19378,7 +19375,7 @@ classes: name: ProteinQuantification description: This is used to link a metaproteomics analysis workflow to a specific protein - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core slot_usage: best_protein: name: best_protein @@ -19423,7 +19420,7 @@ classes: comments: - As with the parent OntologyClass, we will not assign an nmdc id pattern or typecode to this class. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core see_also: - https://bioconductor.org/packages/devel/data/annotation/vignettes/metaboliteIDmapping/inst/doc/metaboliteIDmapping.html aliases: @@ -19463,40 +19460,40 @@ classes: notes: - we may include a more general gene product class in future to allow for ncRNA annotation - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core exact_mappings: - biolink:GeneProduct is_a: NamedThing TextValue: name: TextValue description: A basic string value - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core is_a: AttributeValue slots: - language UrlValue: name: UrlValue description: A value that is a string that conforms to URL syntax - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core is_a: AttributeValue TimestampValue: name: TimestampValue description: A value that is a timestamp. The range should be ISO-8601 notes: - 'removed the following slots: year, month, day' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core is_a: AttributeValue IntegerValue: name: IntegerValue description: A value that is an integer - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core is_a: AttributeValue slots: - has_numeric_value BooleanValue: name: BooleanValue description: A value that is a boolean - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core is_a: AttributeValue slots: - has_boolean_value @@ -19505,7 +19502,7 @@ classes: description: A controlled term or class from an ontology todos: - add fields for ontology, branch - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core is_a: AttributeValue slots: - term @@ -19515,7 +19512,7 @@ classes: of term with an id notes: - To be used for slots like env_broad_scale - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core is_a: ControlledTermValue slot_usage: term: @@ -19526,7 +19523,7 @@ classes: description: A normalized value for a location on the earth's surface notes: - 'what did ''to_str: {latitude} {longitude}'' mean?' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core mappings: - schema:GeoCoordinates is_a: AttributeValue @@ -19546,7 +19543,7 @@ classes: Activity: name: Activity description: a provence-generating activity - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/prov + from_schema: https://w3id.org/nmdc/prov mappings: - prov:Activity slots: @@ -19569,7 +19566,7 @@ classes: DissolvingActivity: name: DissolvingActivity title: Dissolving activity - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep aliases: - dissolution-activity slots: @@ -19594,7 +19591,7 @@ classes: LabDevice: name: LabDevice title: Lab device - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep slots: - device_type - activity_speed @@ -19603,14 +19600,14 @@ classes: MaterialContainer: name: MaterialContainer title: Material container - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep slots: - container_size - container_type MaterialSample: name: MaterialSample title: Material sample - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep aliases: - Material entity is_a: NamedThing @@ -19624,7 +19621,7 @@ classes: MaterialSamplingActivity: name: MaterialSamplingActivity title: Material sampling activity - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep aliases: - weighing-activity slots: @@ -19656,7 +19653,7 @@ classes: ReactionActivity: name: ReactionActivity title: Reaction activity - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep aliases: - reaction-activity slots: @@ -19684,7 +19681,7 @@ classes: description: A feature localized to an interval along a genome comments: - corresponds to an entry in GFF3 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation see_also: - https://github.com/The-Sequence-Ontology/Specifications/blob/master/gff3.md slot_usage: @@ -19746,7 +19743,7 @@ classes: to a functional unit of a genome (protein, ncRNA, complex). todos: - decide if this should be used for product naming - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation aliases: - function - FunctionalAnnotation @@ -19759,7 +19756,7 @@ classes: - COG description: A pathway is a sequence of steps/reactions carried out by an organism or community of organisms - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation aliases: - biological process - metabolic pathway @@ -19787,7 +19784,7 @@ classes: description: An individual biochemical transformation carried out by a functional unit of an organism, in which a collection of substrates are transformed into a collection of products. Can also represent transporters - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation exact_mappings: - biolink:MolecularActivity is_a: FunctionalAnnotationTerm @@ -19827,7 +19824,7 @@ classes: ReactionParticipant: name: ReactionParticipant description: Instances of this link a reaction to a chemical entity participant - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation slot_usage: chemical: name: chemical @@ -19848,7 +19845,7 @@ classes: description: A set of genes or gene products in which all members are orthologous notes: - KEGG.ORTHOLOGY prefix is used for KO numbers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation exact_mappings: - biolink:GeneFamily is_a: FunctionalAnnotationTerm @@ -19861,7 +19858,7 @@ classes: typically using HMM or Blast type methods notes: - move id slot usage patterns to has_function slot usage? - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation see_also: - https://img.jgi.doe.gov/docs/functional-annotation.pdf - https://github.com/microbiomedata/mg_annotation/blob/master/functional-annotation.wdl diff --git a/project/jsonschema/nmdc.schema.json b/project/jsonschema/nmdc.schema.json index c6a20a5d12..17657e8225 100644 --- a/project/jsonschema/nmdc.schema.json +++ b/project/jsonschema/nmdc.schema.json @@ -7755,7 +7755,7 @@ "type": "string" } }, - "$id": "https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc", + "$id": "https://w3id.org/nmdc/nmdc", "$schema": "http://json-schema.org/draft-07/schema#", "additionalProperties": true, "description": "An abstract holder for any set of metadata and data. It does not need to correspond to an actual managed database top level holder class. When translated to JSON-Schema this is the 'root' object. It should contain pointers to other objects of interest", @@ -7954,5 +7954,5 @@ }, "title": "NMDC", "type": "object", - "version": "v7.6.1" + "version": "v7.6.2" } \ No newline at end of file diff --git a/project/nmdc_materialized_patterns.schema.json b/project/nmdc_materialized_patterns.schema.json index 4d18e1cbf6..d62735225a 100644 --- a/project/nmdc_materialized_patterns.schema.json +++ b/project/nmdc_materialized_patterns.schema.json @@ -7783,7 +7783,7 @@ "type": "string" } }, - "$id": "https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc", + "$id": "https://w3id.org/nmdc/nmdc", "$schema": "http://json-schema.org/draft-07/schema#", "additionalProperties": false, "description": "An abstract holder for any set of metadata and data. It does not need to correspond to an actual managed database top level holder class. When translated to JSON-Schema this is the 'root' object. It should contain pointers to other objects of interest", @@ -7982,5 +7982,5 @@ }, "title": "NMDC", "type": "object", - "version": "v7.6.1" + "version": "v7.6.2" } diff --git a/project/nmdc_materialized_patterns.yaml b/project/nmdc_materialized_patterns.yaml index 07db5bbdef..2194aa261e 100644 --- a/project/nmdc_materialized_patterns.yaml +++ b/project/nmdc_materialized_patterns.yaml @@ -12,43 +12,61 @@ notes: need better understanding of id patterns (at least) - commented out several MIxS terms assigned to Biosample because the definitions of those terms were commented out in mixs.yaml dues to shared slot uris -id: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc -version: v7.6.1 +id: https://w3id.org/nmdc/nmdc +version: v7.6.2 license: https://creativecommons.org/publicdomain/zero/1.0/ prefixes: + EFO: + prefix_prefix: EFO + prefix_reference: http://www.ebi.ac.uk/efo/ + ISA: + prefix_prefix: ISA + prefix_reference: http://example.com/isa/ + MetaNetX: + prefix_prefix: MetaNetX + prefix_reference: http://example.com/metanetx/ + RetroRules: + prefix_prefix: RetroRules + prefix_reference: http://example.com/retrorules/ emsl.project: prefix_prefix: emsl.project - prefix_reference: 'https://bioregistry.io/reference/emsl.project:' + prefix_reference: 'https://bioregistry.io/emsl.project:' + generic: + prefix_prefix: generic + prefix_reference: https://example.com/generic/ gnps.task: prefix_prefix: gnps.task - prefix_reference: 'https://bioregistry.io/reference/gnps.task:' + prefix_reference: 'https://bioregistry.io/gnps.task:' + gtpo: + prefix_prefix: gtpo + prefix_reference: http://example.com/gtpo/ + igsn: + prefix_prefix: igsn + prefix_reference: https://app.geosamples.org/sample/igsn/ jgi.proposal: prefix_prefix: jgi.proposal - prefix_reference: 'https://bioregistry.io/reference/jgi.proposal:' + prefix_reference: 'https://bioregistry.io/jgi.proposal:' + jgi: + prefix_prefix: jgi + prefix_reference: http://example.com/jgi/ + linkml: + prefix_prefix: linkml + prefix_reference: https://w3id.org/linkml/ + mgnify.proj: + prefix_prefix: mgnify.proj + prefix_reference: 'https://identifiers.org/mgnify.proj:' neon.identifier: prefix_prefix: neon.identifier prefix_reference: http://example.org/neon/identifier/ neon.schema: prefix_prefix: neon.schema prefix_reference: http://example.org/neon/schema/ - generic: - prefix_prefix: generic - prefix_reference: https://example.com/generic/ - linkml: - prefix_prefix: linkml - prefix_reference: https://w3id.org/linkml/ nmdc: prefix_prefix: nmdc prefix_reference: https://w3id.org/nmdc/ - nmdc_yaml: - prefix_prefix: nmdc_yaml - prefix_reference: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/ skos: prefix_prefix: skos prefix_reference: http://www.w3.org/2004/02/skos/core# - igsn: - prefix_prefix: igsn - prefix_reference: https://app.geosamples.org/sample/igsn/ prov: prefix_prefix: prov prefix_reference: http://www.w3.org/ns/prov# @@ -61,27 +79,6 @@ prefixes: xsd: prefix_prefix: xsd prefix_reference: http://www.w3.org/2001/XMLSchema# - EFO: - prefix_prefix: EFO - prefix_reference: http://identifiers.org/efo/ - MetaNetX: - prefix_prefix: MetaNetX - prefix_reference: http://example.com/metanetx/ - ISA: - prefix_prefix: ISA - prefix_reference: http://example.com/isa/ - RetroRules: - prefix_prefix: RetroRules - prefix_reference: http://example.com/retrorules/ - gtpo: - prefix_prefix: gtpo - prefix_reference: http://example.com/gtpo/ - jgi: - prefix_prefix: jgi - prefix_reference: http://example.com/jgi/ - mgnify.proj: - prefix_prefix: mgnify.proj - prefix_reference: 'https://identifiers.org/mgnify.proj:' KEGG.COMPOUND: prefix_prefix: KEGG.COMPOUND prefix_reference: http://identifiers.org/kegg.compound/ @@ -129,10 +126,10 @@ prefixes: prefix_reference: https://raw.githubusercontent.com/microbiomedata/mixs/main/model/schema/ COG: prefix_prefix: COG - prefix_reference: 'https://bioregistry.io/reference/cog:' + prefix_reference: 'https://bioregistry.io/cog:' EC: prefix_prefix: EC - prefix_reference: 'https://bioregistry.io/reference/eccode:' + prefix_reference: 'https://bioregistry.io/eccode:' GO: prefix_prefix: GO prefix_reference: http://purl.obolibrary.org/obo/GO_ @@ -169,52 +166,52 @@ subsets: name: sample subset description: Subset consisting of entities linked to the processing of samples. Currently, this subset consists of study, omics process, and biosample. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc data object subset: name: data object subset description: Subset consisting of the data objects that either inputs or outputs of processes or workflows. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc workflow subset: name: workflow subset description: Subset consisting of just the workflow execution activities - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc environment: name: environment - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc investigation: name: investigation - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc nucleic acid sequence source: name: nucleic acid sequence source - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc sequencing: name: sequencing - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixs_environmental_triad: name: mixs_environmental_triad title: MIxS Environmental Triad - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixs extension: name: mixs extension - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc checklist: name: checklist description: A MIxS checklist. These can be combined with packages - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc package: name: package description: A MIxS package. These can be combined with checklists - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc checklist_package_combination: name: checklist_package_combination description: A combination of a checklist and a package - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc types: bytes: name: bytes description: An integer value that corresponds to a size in bytes - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - UO:0000233 base: int @@ -222,7 +219,7 @@ types: decimal degree: name: decimal degree description: A decimal degree expresses latitude or longitude as decimal fractions. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://en.wikipedia.org/wiki/Decimal_degrees base: float @@ -230,14 +227,14 @@ types: language code: name: language code description: A language code conforming to ISO_639-1 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://en.wikipedia.org/wiki/ISO_639-1 base: str uri: xsd:language unit: name: unit - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mappings: - qud:Unit - UO:0000000 @@ -246,7 +243,7 @@ types: external identifier: name: external identifier description: A CURIE representing an external identifier - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://microbiomedata.github.io/nmdc-schema/identifiers.html typeof: uriorcurie @@ -254,7 +251,7 @@ types: string: name: string description: A character string - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc exact_mappings: - schema:Text base: str @@ -262,7 +259,7 @@ types: integer: name: integer description: An integer - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc exact_mappings: - schema:Integer base: int @@ -270,7 +267,7 @@ types: boolean: name: boolean description: A binary (true or false) value - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc exact_mappings: - schema:Boolean base: Bool @@ -279,7 +276,7 @@ types: float: name: float description: A real number that conforms to the xsd:float specification - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc exact_mappings: - schema:Float base: float @@ -287,7 +284,7 @@ types: double: name: double description: A real number that conforms to the xsd:double specification - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc close_mappings: - schema:Float base: float @@ -296,7 +293,7 @@ types: name: decimal description: A real number with arbitrary precision that conforms to the xsd:decimal specification - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc broad_mappings: - schema:Number base: Decimal @@ -307,7 +304,7 @@ types: particular day notes: - URI is dateTime because OWL reasoners do not work with straight date or time - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc exact_mappings: - schema:Time base: XSDTime @@ -318,7 +315,7 @@ types: description: a date (year, month and day) in an idealized calendar notes: - URI is dateTime because OWL reasoners don't work with straight date or time - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc exact_mappings: - schema:Date base: XSDDate @@ -327,7 +324,7 @@ types: datetime: name: datetime description: The combination of a date and time - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc exact_mappings: - schema:DateTime base: XSDDateTime @@ -336,14 +333,14 @@ types: date_or_datetime: name: date_or_datetime description: Either a date or a datetime - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc base: str uri: linkml:DateOrDatetime repr: str uriorcurie: name: uriorcurie description: a URI or a CURIE - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc base: URIorCURIE uri: xsd:anyURI repr: str @@ -354,7 +351,7 @@ types: comments: - in RDF serializations this MUST be expanded to a URI - in non-RDF serializations MAY be serialized as the compact representation - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc base: Curie uri: xsd:string repr: str @@ -366,7 +363,7 @@ types: - in RDF serializations a slot with range of uri is treated as a literal or type xsd:anyURI unless it is an identifier or a reference to an identifier, in which case it is translated directly to a node - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc close_mappings: - schema:URL base: URI @@ -375,7 +372,7 @@ types: ncname: name: ncname description: Prefix part of CURIE - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc base: NCName uri: xsd:string repr: str @@ -384,21 +381,21 @@ types: description: A URI or CURIE that represents an object in the model. comments: - Used for inheritence and type checking - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc base: ElementIdentifier uri: shex:iri repr: str nodeidentifier: name: nodeidentifier description: A URI, CURIE or BNODE that represents a node in a model. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc base: NodeIdentifier uri: shex:nonLiteral repr: str enums: StatusEnum: name: StatusEnum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: pass: text: pass @@ -406,7 +403,7 @@ enums: text: fail ExtractionTargetEnum: name: ExtractionTargetEnum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: DNA: text: DNA @@ -418,7 +415,7 @@ enums: text: protein LibraryTypeEnum: name: LibraryTypeEnum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: DNA: text: DNA @@ -426,7 +423,7 @@ enums: text: RNA JgiContTypeEnum: name: JgiContTypeEnum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: plate: text: plate @@ -435,7 +432,7 @@ enums: YesNoEnum: name: YesNoEnum description: replaces DnaDnaseEnum and DnaseRnaEnum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: 'no': text: 'no' @@ -451,7 +448,7 @@ enums: - They might also be applicable to other classes - They are intended to enable metadata search and or filtering, for example in the NMDC data portal, https://data.microbiomedata.org/ - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - category tag permissible_values: @@ -478,7 +475,7 @@ enums: title: National Science Foundation's National Ecological Observatory Network file type enum: name: file type enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: Metagenome Raw Reads: text: Metagenome Raw Reads @@ -865,7 +862,7 @@ enums: name: credit enum comments: - credit enums come from https://casrai.org/credit/ - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: Conceptualization: text: Conceptualization @@ -923,7 +920,7 @@ enums: notes: - This will become the range of processing_institution.omics processing - use ROR meanings like https://ror.org/0168r3w48 for UCSD - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: UCSD: text: UCSD @@ -951,7 +948,7 @@ enums: ContainerTypeEnum: name: ContainerTypeEnum title: Container type enumeration - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: screw_top_conical: text: screw_top_conical @@ -961,7 +958,7 @@ enums: DeviceTypeEnum: name: DeviceTypeEnum title: Shaker type enumeration - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: orbital_shaker: text: orbital_shaker @@ -971,7 +968,7 @@ enums: title: Thermomixer SamplingMethodEnum: name: SamplingMethodEnum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: weighing: text: weighing @@ -979,7 +976,7 @@ enums: SolventEnum: name: SolventEnum title: Solvent enumeration - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: deionized_water: text: deionized_water @@ -996,7 +993,7 @@ enums: title: Chloroform analysis_type_enum: name: analysis_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: metabolomics: text: metabolomics @@ -1010,7 +1007,7 @@ enums: text: natural organic matter rna_sample_format_enum: name: rna_sample_format_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: 10 mM Tris-HCl: text: 10 mM Tris-HCl @@ -1038,7 +1035,7 @@ enums: text: Gentegra-RNA dna_sample_format_enum: name: dna_sample_format_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: 10 mM Tris-HCl: text: 10 mM Tris-HCl @@ -1066,27 +1063,87 @@ enums: text: Gentegra-RNA sample_type_enum: name: sample_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: soil: text: soil water_extract_soil: text: water_extract_soil - door_comp_type_enum: - name: door_comp_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + wall_loc_enum: + name: wall_loc_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - metal covered: - text: metal covered - revolving: - text: revolving - sliding: - text: sliding - telescopic: - text: telescopic + north: + text: north + south: + text: south + east: + text: east + west: + text: west + wall_texture_enum: + name: wall_texture_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + crows feet: + text: crows feet + crows-foot stomp: + text: crows-foot stomp + ? '' + : text: '' + double skip: + text: double skip + hawk and trowel: + text: hawk and trowel + knockdown: + text: knockdown + popcorn: + text: popcorn + orange peel: + text: orange peel + rosebud stomp: + text: rosebud stomp + Santa-Fe texture: + text: Santa-Fe texture + skip trowel: + text: skip trowel + smooth: + text: smooth + stomp knockdown: + text: stomp knockdown + swirl: + text: swirl + door_type_metal_enum: + name: door_type_metal_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + collapsible: + text: collapsible + corrugated steel: + text: corrugated steel + hollow: + text: hollow + rolling shutters: + text: rolling shutters + steel plate: + text: steel plate + water_feat_type_enum: + name: water_feat_type_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + fountain: + text: fountain + pool: + text: pool + standing feature: + text: standing feature + stream: + text: stream + waterfall: + text: waterfall organism_count_enum: name: organism_count_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: ATP: text: ATP @@ -1094,167 +1151,121 @@ enums: text: MPN other: text: other - light_type_enum: - name: light_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - natural light: - text: natural light - electric light: - text: electric light - desk lamp: - text: desk lamp - flourescent lights: - text: flourescent lights - none: - text: none - freq_clean_enum: - name: freq_clean_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + growth_habit_enum: + name: growth_habit_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Daily: - text: Daily - Weekly: - text: Weekly - Monthly: - text: Monthly - Quarterly: - text: Quarterly - Annually: - text: Annually - other: - text: other - substructure_type_enum: - name: substructure_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + erect: + text: erect + semi-erect: + text: semi-erect + spreading: + text: spreading + prostrate: + text: prostrate + room_samp_pos_enum: + name: room_samp_pos_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - crawlspace: - text: crawlspace - slab on grade: - text: slab on grade - basement: - text: basement - depos_env_enum: - name: depos_env_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + north corner: + text: north corner + south corner: + text: south corner + west corner: + text: west corner + east corner: + text: east corner + northeast corner: + text: northeast corner + northwest corner: + text: northwest corner + southeast corner: + text: southeast corner + southwest corner: + text: southwest corner + center: + text: center + rel_samp_loc_enum: + name: rel_samp_loc_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Continental - Alluvial: - text: Continental - Alluvial - Continental - Aeolian: - text: Continental - Aeolian - Continental - Fluvial: - text: Continental - Fluvial - Continental - Lacustrine: - text: Continental - Lacustrine - Transitional - Deltaic: - text: Transitional - Deltaic - Transitional - Tidal: - text: Transitional - Tidal - Transitional - Lagoonal: - text: Transitional - Lagoonal - Transitional - Beach: - text: Transitional - Beach - Transitional - Lake: - text: Transitional - Lake - Marine - Shallow: - text: Marine - Shallow - Marine - Deep: - text: Marine - Deep - Marine - Reef: - text: Marine - Reef - Other - Evaporite: - text: Other - Evaporite - Other - Glacial: - text: Other - Glacial - Other - Volcanic: - text: Other - Volcanic - other: - text: other - shading_device_cond_enum: - name: shading_device_cond_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + edge of car: + text: edge of car + center of car: + text: center of car + under a seat: + text: under a seat + wall_surf_treatment_enum: + name: wall_surf_treatment_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - damaged: - text: damaged - needs repair: - text: needs repair - new: - text: new - rupture: - text: rupture - visible wear: - text: visible wear - quad_pos_enum: - name: quad_pos_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - North side: - text: North side - West side: - text: West side - South side: - text: South side - East side: - text: East side - samp_floor_enum: - name: samp_floor_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - 1st floor: - text: 1st floor - 2nd floor: - text: 2nd floor - basement: - text: basement - lobby: - text: lobby - floor_cond_enum: - name: floor_cond_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + painted: + text: painted + wall paper: + text: wall paper + no treatment: + text: no treatment + paneling: + text: paneling + stucco: + text: stucco + fabric: + text: fabric + train_line_enum: + name: train_line_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - new: - text: new - visible wear: - text: visible wear - needs repair: - text: needs repair - damaged: - text: damaged - rupture: - text: rupture - specific_enum: - name: specific_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + red: + text: red + green: + text: green + orange: + text: orange + window_loc_enum: + name: window_loc_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - operation: - text: operation - as built: - text: as built - construction: - text: construction - bid: - text: bid - design: - text: design - photos: - text: photos - ceil_cond_enum: - name: ceil_cond_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + north: + text: north + south: + text: south + east: + text: east + west: + text: west + ceil_texture_enum: + name: ceil_texture_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - new: - text: new - visible wear: - text: visible wear - needs repair: - text: needs repair - damaged: - text: damaged - rupture: - text: rupture + crows feet: + text: crows feet + crows-foot stomp: + text: crows-foot stomp + double skip: + text: double skip + hawk and trowel: + text: hawk and trowel + knockdown: + text: knockdown + popcorn: + text: popcorn + orange peel: + text: orange peel + rosebud stomp: + text: rosebud stomp + Santa-Fe texture: + text: Santa-Fe texture + skip trowel: + text: skip trowel + smooth: + text: smooth + stomp knockdown: + text: stomp knockdown + swirl: + text: swirl oxy_stat_samp_enum: name: oxy_stat_samp_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: aerobic: text: aerobic @@ -1262,101 +1273,115 @@ enums: text: anaerobic other: text: other - shading_device_type_enum: - name: shading_device_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + plant_sex_enum: + name: plant_sex_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - bahama shutters: - text: bahama shutters - exterior roll blind: - text: exterior roll blind - gambrel awning: - text: gambrel awning - hood awning: - text: hood awning - porchroller awning: - text: porchroller awning - sarasota shutters: - text: sarasota shutters - slatted aluminum: - text: slatted aluminum - solid aluminum awning: - text: solid aluminum awning - sun screen: - text: sun screen - tree: - text: tree - trellis: - text: trellis - venetian awning: - text: venetian awning - vis_media_enum: - name: vis_media_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + Androdioecious: + text: Androdioecious + Androecious: + text: Androecious + Androgynous: + text: Androgynous + Androgynomonoecious: + text: Androgynomonoecious + Andromonoecious: + text: Andromonoecious + Bisexual: + text: Bisexual + Dichogamous: + text: Dichogamous + Diclinous: + text: Diclinous + Dioecious: + text: Dioecious + Gynodioecious: + text: Gynodioecious + Gynoecious: + text: Gynoecious + Gynomonoecious: + text: Gynomonoecious + Hermaphroditic: + text: Hermaphroditic + Imperfect: + text: Imperfect + Monoclinous: + text: Monoclinous + Monoecious: + text: Monoecious + Perfect: + text: Perfect + Polygamodioecious: + text: Polygamodioecious + Polygamomonoecious: + text: Polygamomonoecious + Polygamous: + text: Polygamous + Protandrous: + text: Protandrous + Protogynous: + text: Protogynous + Subandroecious: + text: Subandroecious + Subdioecious: + text: Subdioecious + Subgynoecious: + text: Subgynoecious + Synoecious: + text: Synoecious + Trimonoecious: + text: Trimonoecious + Trioecious: + text: Trioecious + Unisexual: + text: Unisexual + ext_wall_orient_enum: + name: ext_wall_orient_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - photos: - text: photos - videos: - text: videos - commonly of the building: - text: commonly of the building - site context (adjacent buildings, vegetation, terrain, streets): - text: site context (adjacent buildings, vegetation, terrain, streets) - interiors: - text: interiors - equipment: - text: equipment - 3D scans: - text: 3D scans - drawings_enum: - name: drawings_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + north: + text: north + south: + text: south + east: + text: east + west: + text: west + northeast: + text: northeast + southeast: + text: southeast + southwest: + text: southwest + northwest: + text: northwest + furniture_enum: + name: furniture_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - operation: - text: operation - as built: - text: as built - construction: - text: construction - bid: - text: bid - design: - text: design - building navigation map: - text: building navigation map - diagram: - text: diagram - sketch: - text: sketch - window_cover_enum: - name: window_cover_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - blinds: - text: blinds - curtains: - text: curtains - none: - text: none - hc_produced_enum: - name: hc_produced_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + cabinet: + text: cabinet + chair: + text: chair + desks: + text: desks + sr_lithology_enum: + name: sr_lithology_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Oil: - text: Oil - Gas-Condensate: - text: Gas-Condensate - Gas: - text: Gas - Bitumen: - text: Bitumen - Coalbed Methane: - text: Coalbed Methane + Clastic: + text: Clastic + Carbonate: + text: Carbonate + Coal: + text: Coal + Biosilicieous: + text: Biosilicieous other: text: other train_stop_loc_enum: name: train_stop_loc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: end: text: end @@ -1364,207 +1389,171 @@ enums: text: mid downtown: text: downtown - build_occup_type_enum: - name: build_occup_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - office: - text: office - market: - text: market - restaurant: - text: restaurant - residence: - text: residence - school: - text: school - residential: - text: residential - commercial: - text: commercial - low rise: - text: low rise - high rise: - text: high rise - wood framed: - text: wood framed - health care: - text: health care - airport: - text: airport - sports complex: - text: sports complex - rel_samp_loc_enum: - name: rel_samp_loc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + substructure_type_enum: + name: substructure_type_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - edge of car: - text: edge of car - center of car: - text: center of car - under a seat: - text: under a seat - occup_document_enum: - name: occup_document_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + crawlspace: + text: crawlspace + slab on grade: + text: slab on grade + basement: + text: basement + ceil_finish_mat_enum: + name: ceil_finish_mat_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - automated count: - text: automated count - estimate: - text: estimate - manual count: - text: manual count - videos: - text: videos - weekday_enum: - name: weekday_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + drywall: + text: drywall + mineral fibre: + text: mineral fibre + tiles: + text: tiles + PVC: + text: PVC + plasterboard: + text: plasterboard + metal: + text: metal + fiberglass: + text: fiberglass + stucco: + text: stucco + mineral wool/calcium silicate: + text: mineral wool/calcium silicate + wood: + text: wood + door_type_enum: + name: door_type_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Monday: - text: Monday - Tuesday: - text: Tuesday - Wednesday: - text: Wednesday - Thursday: - text: Thursday - Friday: - text: Friday - Saturday: - text: Saturday - Sunday: - text: Sunday - soil_horizon_enum: - name: soil_horizon_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + composite: + text: composite + metal: + text: metal + wooden: + text: wooden + biol_stat_enum: + name: biol_stat_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - O horizon: - text: O horizon - A horizon: - text: A horizon - E horizon: - text: E horizon - B horizon: - text: B horizon - C horizon: - text: C horizon - R layer: - text: R layer - Permafrost: - text: Permafrost - M horizon: - text: M horizon - room_loc_enum: - name: room_loc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + wild: + text: wild + natural: + text: natural + semi-natural: + text: semi-natural + inbred line: + text: inbred line + breeder's line: + text: breeder's line + hybrid: + text: hybrid + clonal selection: + text: clonal selection + mutant: + text: mutant + window_vert_pos_enum: + name: window_vert_pos_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - corner room: - text: corner room - interior room: - text: interior room - exterior wall: - text: exterior wall - indoor_surf_enum: - name: indoor_surf_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + bottom: + text: bottom + middle: + text: middle + top: + text: top + low: + text: low + high: + text: high + tillage_enum: + name: tillage_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - cabinet: - text: cabinet - ceiling: - text: ceiling - counter top: - text: counter top - door: - text: door - shelving: - text: shelving - vent cover: - text: vent cover - window: - text: window - wall: - text: wall - door_type_wood_enum: - name: door_type_wood_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + drill: + text: drill + cutting disc: + text: cutting disc + ridge till: + text: ridge till + strip tillage: + text: strip tillage + zonal tillage: + text: zonal tillage + chisel: + text: chisel + tined: + text: tined + mouldboard: + text: mouldboard + disc plough: + text: disc plough + build_docs_enum: + name: build_docs_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - bettened and ledged: - text: bettened and ledged - battened: - text: battened - ledged and braced: - text: ledged and braced - ledged and framed: - text: ledged and framed - ledged, braced and frame: - text: ledged, braced and frame - framed and paneled: - text: framed and paneled - glashed or sash: - text: glashed or sash - flush: - text: flush - louvered: - text: louvered - wire gauged: - text: wire gauged - floor_struc_enum: - name: floor_struc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - balcony: - text: balcony - floating floor: - text: floating floor - glass floor: - text: glass floor - raised floor: - text: raised floor - sprung floor: - text: sprung floor - wood-framed: - text: wood-framed - concrete: - text: concrete - door_type_metal_enum: - name: door_type_metal_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + building information model: + text: building information model + commissioning report: + text: commissioning report + complaint logs: + text: complaint logs + contract administration: + text: contract administration + cost estimate: + text: cost estimate + janitorial schedules or logs: + text: janitorial schedules or logs + maintenance plans: + text: maintenance plans + schedule: + text: schedule + sections: + text: sections + shop drawings: + text: shop drawings + submittals: + text: submittals + ventilation system: + text: ventilation system + windows: + text: windows + window_type_enum: + name: window_type_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - collapsible: - text: collapsible - corrugated steel: - text: corrugated steel - hollow: - text: hollow - rolling shutters: - text: rolling shutters - steel plate: - text: steel plate - samp_weather_enum: - name: samp_weather_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + single-hung sash window: + text: single-hung sash window + horizontal sash window: + text: horizontal sash window + fixed window: + text: fixed window + mech_struc_enum: + name: mech_struc_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - clear sky: - text: clear sky - cloudy: - text: cloudy - foggy: - text: foggy - hail: - text: hail - rain: - text: rain - snow: - text: snow - sleet: - text: sleet - sunny: - text: sunny - windy: - text: windy - ext_window_orient_enum: - name: ext_window_orient_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + subway: + text: subway + coach: + text: coach + carriage: + text: carriage + elevator: + text: elevator + escalator: + text: escalator + boat: + text: boat + train: + text: train + car: + text: car + bus: + text: bus + door_loc_enum: + name: door_loc_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: north: text: north @@ -1574,17 +1563,53 @@ enums: text: east west: text: west - northeast: - text: northeast - southeast: - text: southeast - southwest: - text: southwest - northwest: - text: northwest + shading_device_cond_enum: + name: shading_device_cond_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + damaged: + text: damaged + needs repair: + text: needs repair + new: + text: new + rupture: + text: rupture + visible wear: + text: visible wear + samp_floor_enum: + name: samp_floor_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + 1st floor: + text: 1st floor + 2nd floor: + text: 2nd floor + basement: + text: basement + lobby: + text: lobby + samp_collect_point_enum: + name: samp_collect_point_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + well: + text: well + test well: + text: test well + drilling rig: + text: drilling rig + wellhead: + text: wellhead + separator: + text: separator + storage tank: + text: storage tank + other: + text: other sediment_type_enum: name: sediment_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: biogenous: text: biogenous @@ -1594,9 +1619,83 @@ enums: text: hydrogenous lithogenous: text: lithogenous - room_condt_enum: - name: room_condt_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + indoor_space_enum: + name: indoor_space_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + bedroom: + text: bedroom + office: + text: office + bathroom: + text: bathroom + foyer: + text: foyer + kitchen: + text: kitchen + locker room: + text: locker room + hallway: + text: hallway + elevator: + text: elevator + handidness_enum: + name: handidness_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + ambidexterity: + text: ambidexterity + left handedness: + text: left handedness + mixed-handedness: + text: mixed-handedness + right handedness: + text: right handedness + door_type_wood_enum: + name: door_type_wood_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + bettened and ledged: + text: bettened and ledged + battened: + text: battened + ledged and braced: + text: ledged and braced + ledged and framed: + text: ledged and framed + ledged, braced and frame: + text: ledged, braced and frame + framed and paneled: + text: framed and paneled + glashed or sash: + text: glashed or sash + flush: + text: flush + louvered: + text: louvered + wire gauged: + text: wire gauged + floor_struc_enum: + name: floor_struc_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + balcony: + text: balcony + floating floor: + text: floating floor + glass floor: + text: glass floor + raised floor: + text: raised floor + sprung floor: + text: sprung floor + wood-framed: + text: wood-framed + concrete: + text: concrete + floor_cond_enum: + name: floor_cond_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: new: text: new @@ -1608,111 +1707,113 @@ enums: text: damaged rupture: text: rupture - visible signs of mold/mildew: - text: visible signs of mold/mildew - sr_dep_env_enum: - name: sr_dep_env_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - Lacustine: - text: Lacustine - Fluvioldeltaic: - text: Fluvioldeltaic - Fluviomarine: - text: Fluviomarine - Marine: - text: Marine - other: - text: other - wall_surf_treatment_enum: - name: wall_surf_treatment_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + drawings_enum: + name: drawings_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - painted: - text: painted - wall paper: - text: wall paper - no treatment: - text: no treatment - paneling: - text: paneling - stucco: - text: stucco - fabric: - text: fabric - water_feat_type_enum: - name: water_feat_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + operation: + text: operation + as built: + text: as built + construction: + text: construction + bid: + text: bid + design: + text: design + building navigation map: + text: building navigation map + diagram: + text: diagram + sketch: + text: sketch + room_condt_enum: + name: room_condt_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - fountain: - text: fountain - pool: - text: pool - standing feature: - text: standing feature - stream: - text: stream - waterfall: - text: waterfall - window_mat_enum: - name: window_mat_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + new: + text: new + visible wear: + text: visible wear + needs repair: + text: needs repair + damaged: + text: damaged + rupture: + text: rupture + visible signs of mold/mildew: + text: visible signs of mold/mildew + hc_produced_enum: + name: hc_produced_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - clad: - text: clad - fiberglass: - text: fiberglass + Oil: + text: Oil + Gas-Condensate: + text: Gas-Condensate + Gas: + text: Gas + Bitumen: + text: Bitumen + Coalbed Methane: + text: Coalbed Methane + other: + text: other + surf_material_enum: + name: surf_material_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + adobe: + text: adobe + carpet: + text: carpet + cinder blocks: + text: cinder blocks + concrete: + text: concrete + hay bales: + text: hay bales + glass: + text: glass metal: text: metal + paint: + text: paint + plastic: + text: plastic + stainless steel: + text: stainless steel + stone: + text: stone + stucco: + text: stucco + tile: + text: tile vinyl: text: vinyl wood: text: wood - furniture_enum: - name: furniture_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - cabinet: - text: cabinet - chair: - text: chair - desks: - text: desks - building_setting_enum: - name: building_setting_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - urban: - text: urban - suburban: - text: suburban - exurban: - text: exurban - rural: - text: rural - door_direct_enum: - name: door_direct_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - inward: - text: inward - outward: - text: outward - sideways: - text: sideways - window_horiz_pos_enum: - name: window_horiz_pos_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + vis_media_enum: + name: vis_media_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - left: - text: left - middle: - text: middle - right: - text: right + photos: + text: photos + videos: + text: videos + commonly of the building: + text: commonly of the building + site context (adjacent buildings, vegetation, terrain, streets): + text: site context (adjacent buildings, vegetation, terrain, streets) + interiors: + text: interiors + equipment: + text: equipment + 3D scans: + text: 3D scans samp_dis_stage_enum: name: samp_dis_stage_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: dissemination: text: dissemination @@ -1726,496 +1827,157 @@ enums: text: penetration other: text: other - door_cond_enum: - name: door_cond_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + profile_position_enum: + name: profile_position_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - damaged: - text: damaged - needs repair: - text: needs repair - new: - text: new - rupture: - text: rupture - visible wear: - text: visible wear - filter_type_enum: - name: filter_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + summit: + text: summit + shoulder: + text: shoulder + backslope: + text: backslope + footslope: + text: footslope + toeslope: + text: toeslope + building_setting_enum: + name: building_setting_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - particulate air filter: - text: particulate air filter - chemical air filter: - text: chemical air filter - low-MERV pleated media: - text: low-MERV pleated media - HEPA: - text: HEPA - electrostatic: - text: electrostatic - gas-phase or ultraviolet air treatments: - text: gas-phase or ultraviolet air treatments - window_type_enum: - name: window_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + urban: + text: urban + suburban: + text: suburban + exurban: + text: exurban + rural: + text: rural + sr_geol_age_enum: + name: sr_geol_age_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - single-hung sash window: - text: single-hung sash window - horizontal sash window: - text: horizontal sash window - fixed window: - text: fixed window - build_docs_enum: - name: build_docs_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + Archean: + text: Archean + Cambrian: + text: Cambrian + Carboniferous: + text: Carboniferous + Cenozoic: + text: Cenozoic + Cretaceous: + text: Cretaceous + Devonian: + text: Devonian + Jurassic: + text: Jurassic + Mesozoic: + text: Mesozoic + Neogene: + text: Neogene + Ordovician: + text: Ordovician + Paleogene: + text: Paleogene + Paleozoic: + text: Paleozoic + Permian: + text: Permian + Precambrian: + text: Precambrian + Proterozoic: + text: Proterozoic + Silurian: + text: Silurian + Triassic: + text: Triassic + other: + text: other + samp_capt_status_enum: + name: samp_capt_status_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - building information model: - text: building information model - commissioning report: - text: commissioning report - complaint logs: - text: complaint logs - contract administration: - text: contract administration - cost estimate: - text: cost estimate - janitorial schedules or logs: - text: janitorial schedules or logs - maintenance plans: - text: maintenance plans - schedule: - text: schedule - sections: - text: sections - shop drawings: - text: shop drawings - submittals: - text: submittals - ventilation system: - text: ventilation system - windows: - text: windows - cur_land_use_enum: - name: cur_land_use_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - badlands: - text: badlands - cities: - text: cities - conifers: - text: conifers - annotations: - originally: - tag: originally - value: conifers (e.g. pine,spruce,fir,cypress) - examples: - - value: cypress - - value: fir - - value: pine - - value: spruce - crop trees: - text: crop trees - annotations: - originally: - tag: originally - value: crop trees (nuts,fruit,christmas trees,nursery trees) - examples: - - value: christmas trees - - value: fruit - - value: nursery trees - - value: nuts - farmstead: - text: farmstead - gravel: - text: gravel - hardwoods: - text: hardwoods - annotations: - originally: - tag: originally - value: hardwoods (e.g. oak,hickory,elm,aspen) - examples: - - value: aspen - - value: elm - - value: hickory - - value: oak - hayland: - text: hayland - horticultural plants: - text: horticultural plants - annotations: - originally: - tag: originally - value: horticultural plants (e.g. tulips) - examples: - - value: tulips - industrial areas: - text: industrial areas - intermixed hardwood and conifers: - text: intermixed hardwood and conifers - marshlands: - text: marshlands - annotations: - originally: - tag: originally - value: marshlands (grass,sedges,rushes) - examples: - - value: grass - - value: rushes - - value: sedgees - meadows: - text: meadows - annotations: - originally: - tag: originally - value: meadows (grasses,alfalfa,fescue,bromegrass,timothy) - examples: - - value: alfalfa - - value: bromegrass - - value: fescue - - value: grasses - - value: timothy - mines/quarries: - text: mines/quarries - mudflats: - text: mudflats - oil waste areas: - text: oil waste areas - pastureland: - text: pastureland - annotations: - originally: - tag: originally - value: pastureland (grasslands used for livestock grazing) - comments: - - grasslands used for livestock grazing - permanent snow or ice: - text: permanent snow or ice - rainforest: - text: rainforest - annotations: - originally: - tag: originally - value: rainforest (evergreen forest receiving greater than 406 cm annual - rainfall) - comments: - - evergreen forest receiving greater than 406 cm annual rainfall - rangeland: - text: rangeland - roads/railroads: - text: roads/railroads - rock: - text: rock - row crops: - text: row crops - saline seeps: - text: saline seeps - salt flats: - text: salt flats - sand: - text: sand - shrub crops: - text: shrub crops - annotations: - originally: - tag: originally - value: shrub crops (blueberries,nursery ornamentals,filberts) - examples: - - value: blueberries - - value: filberts - - value: nursery ornamentals - shrub land: - text: shrub land - annotations: - originally: - tag: originally - value: shrub land (e.g. mesquite,sage-brush,creosote bush,shrub oak,eucalyptus) - examples: - - value: creosote bush - - value: eucalyptus - - value: mesquite - - value: sage-brush - - value: shrub oak - small grains: - text: small grains - successional shrub land: - text: successional shrub land - annotations: - originally: - tag: originally - value: successional shrub land (tree saplings,hazels,sumacs,chokecherry,shrub - dogwoods,blackberries) - examples: - - value: blackberries - - value: chokecherry - - value: hazels - - value: shrub dogwoods - - value: sumacs - - value: tree saplings - swamp: - text: swamp - annotations: - originally: - tag: originally - value: swamp (permanent or semi-permanent water body dominated by woody - plants) - comments: - - permanent or semi-permanent water body dominated by woody plants - tropical: - text: tropical - annotations: - originally: - tag: originally - value: tropical (e.g. mangrove,palms) - examples: - - value: mangrove - - value: palms - tundra: - text: tundra - annotations: - originally: - tag: originally - value: tundra (mosses,lichens) - examples: - - value: lichens - - value: mosses - vegetable crops: - text: vegetable crops - vine crops: - text: vine crops - annotations: - originally: - tag: originally - value: vine crops (grapes) - examples: - - value: grapes - host_sex_enum: - name: host_sex_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - female: - text: female - hermaphrodite: - text: hermaphrodite - male: - text: male - neuter: - text: neuter - samp_collect_point_enum: - name: samp_collect_point_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - well: - text: well - test well: - text: test well - drilling rig: - text: drilling rig - wellhead: - text: wellhead - separator: - text: separator - storage tank: - text: storage tank - other: - text: other - train_line_enum: - name: train_line_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - red: - text: red - green: - text: green - orange: - text: orange - mech_struc_enum: - name: mech_struc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - subway: - text: subway - coach: - text: coach - carriage: - text: carriage - elevator: - text: elevator - escalator: - text: escalator - boat: - text: boat - train: - text: train - car: - text: car - bus: - text: bus - lithology_enum: - name: lithology_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - Basement: - text: Basement - Chalk: - text: Chalk - Chert: - text: Chert - Coal: - text: Coal - Conglomerate: - text: Conglomerate - Diatomite: - text: Diatomite - Dolomite: - text: Dolomite - Limestone: - text: Limestone - Sandstone: - text: Sandstone - Shale: - text: Shale - Siltstone: - text: Siltstone - Volcanic: - text: Volcanic + active surveillance in response to an outbreak: + text: active surveillance in response to an outbreak + active surveillance not initiated by an outbreak: + text: active surveillance not initiated by an outbreak + farm sample: + text: farm sample + market sample: + text: market sample other: text: other - door_mat_enum: - name: door_mat_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - aluminum: - text: aluminum - cellular PVC: - text: cellular PVC - engineered plastic: - text: engineered plastic - fiberboard: - text: fiberboard - fiberglass: - text: fiberglass - metal: - text: metal - thermoplastic alloy: - text: thermoplastic alloy - vinyl: - text: vinyl - wood: - text: wood - wood/plastic composite: - text: wood/plastic composite - floor_water_mold_enum: - name: floor_water_mold_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - mold odor: - text: mold odor - wet floor: - text: wet floor - water stains: - text: water stains - wall discoloration: - text: wall discoloration - floor discoloration: - text: floor discoloration - ceiling discoloration: - text: ceiling discoloration - peeling paint or wallpaper: - text: peeling paint or wallpaper - bulging walls: - text: bulging walls - condensation: - text: condensation - surf_air_cont_enum: - name: surf_air_cont_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + soil_horizon_enum: + name: soil_horizon_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - dust: - text: dust - organic matter: - text: organic matter - particulate matter: - text: particulate matter - volatile organic compounds: - text: volatile organic compounds - biological contaminants: - text: biological contaminants - radon: - text: radon - nutrients: - text: nutrients - biocides: - text: biocides - ceil_finish_mat_enum: - name: ceil_finish_mat_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + O horizon: + text: O horizon + A horizon: + text: A horizon + E horizon: + text: E horizon + B horizon: + text: B horizon + C horizon: + text: C horizon + R layer: + text: R layer + Permafrost: + text: Permafrost + M horizon: + text: M horizon + ext_window_orient_enum: + name: ext_window_orient_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - drywall: - text: drywall - mineral fibre: - text: mineral fibre - tiles: - text: tiles - PVC: - text: PVC - plasterboard: - text: plasterboard - metal: - text: metal - fiberglass: - text: fiberglass - stucco: - text: stucco - mineral wool/calcium silicate: - text: mineral wool/calcium silicate - wood: - text: wood - samp_md_enum: - name: samp_md_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + north: + text: north + south: + text: south + east: + text: east + west: + text: west + northeast: + text: northeast + southeast: + text: southeast + southwest: + text: southwest + northwest: + text: northwest + heat_deliv_loc_enum: + name: heat_deliv_loc_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - DF: - text: DF - RT: - text: RT - KB: - text: KB - MSL: - text: MSL - other: - text: other - wall_finish_mat_enum: - name: wall_finish_mat_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + north: + text: north + south: + text: south + east: + text: east + west: + text: west + door_move_enum: + name: door_move_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - plaster: - text: plaster - gypsum plaster: - text: gypsum plaster - veneer plaster: - text: veneer plaster - gypsum board: - text: gypsum board - tile: - text: tile - terrazzo: - text: terrazzo - stone facing: - text: stone facing - acoustical treatment: - text: acoustical treatment - wood: - text: wood - metal: - text: metal - masonry: - text: masonry + collapsible: + text: collapsible + folding: + text: folding + revolving: + text: revolving + rolling shutter: + text: rolling shutter + sliding: + text: sliding + swinging: + text: swinging floor_finish_mat_enum: name: floor_finish_mat_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: tile: text: tile @@ -2253,87 +2015,179 @@ enums: text: paint none or unfinished: text: none or unfinished - sr_kerog_type_enum: - name: sr_kerog_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + tidal_stage_enum: + name: tidal_stage_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Type I: - text: Type I - Type II: - text: Type II - Type III: - text: Type III - Type IV: - text: Type IV + low tide: + text: low tide + ebb tide: + text: ebb tide + flood tide: + text: flood tide + high tide: + text: high tide + train_stat_loc_enum: + name: train_stat_loc_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + south station above ground: + text: south station above ground + south station underground: + text: south station underground + south station amtrak: + text: south station amtrak + forest hills: + text: forest hills + riverside: + text: riverside + lithology_enum: + name: lithology_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + Basement: + text: Basement + Chalk: + text: Chalk + Chert: + text: Chert + Coal: + text: Coal + Conglomerate: + text: Conglomerate + Diatomite: + text: Diatomite + Dolomite: + text: Dolomite + Limestone: + text: Limestone + Sandstone: + text: Sandstone + Shale: + text: Shale + Siltstone: + text: Siltstone + Volcanic: + text: Volcanic other: text: other - biotic_relationship_enum: - name: biotic_relationship_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + hcr_geol_age_enum: + name: hcr_geol_age_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - free living: - text: free living - parasite: - text: parasite - commensal: - text: commensal - symbiont: - text: symbiont - room_connected_enum: - name: room_connected_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + Archean: + text: Archean + Cambrian: + text: Cambrian + Carboniferous: + text: Carboniferous + Cenozoic: + text: Cenozoic + Cretaceous: + text: Cretaceous + Devonian: + text: Devonian + Jurassic: + text: Jurassic + Mesozoic: + text: Mesozoic + Neogene: + text: Neogene + Ordovician: + text: Ordovician + Paleogene: + text: Paleogene + Paleozoic: + text: Paleozoic + Permian: + text: Permian + Precambrian: + text: Precambrian + Proterozoic: + text: Proterozoic + Silurian: + text: Silurian + Triassic: + text: Triassic + other: + text: other + hcr_enum: + name: hcr_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + Oil Reservoir: + text: Oil Reservoir + Gas Reservoir: + text: Gas Reservoir + Oil Sand: + text: Oil Sand + Coalbed: + text: Coalbed + Shale: + text: Shale + Tight Oil Reservoir: + text: Tight Oil Reservoir + Tight Gas Reservoir: + text: Tight Gas Reservoir + other: + text: other + build_occup_type_enum: + name: build_occup_type_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - attic: - text: attic - bathroom: - text: bathroom - closet: - text: closet - conference room: - text: conference room - elevator: - text: elevator - examining room: - text: examining room - hallway: - text: hallway - kitchen: - text: kitchen - mail room: - text: mail room office: text: office - stairwell: - text: stairwell - growth_habit_enum: - name: growth_habit_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + market: + text: market + restaurant: + text: restaurant + residence: + text: residence + school: + text: school + residential: + text: residential + commercial: + text: commercial + low rise: + text: low rise + high rise: + text: high rise + wood framed: + text: wood framed + health care: + text: health care + airport: + text: airport + sports complex: + text: sports complex + window_cover_enum: + name: window_cover_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - erect: - text: erect - semi-erect: - text: semi-erect - spreading: - text: spreading - prostrate: - text: prostrate - samp_subtype_enum: - name: samp_subtype_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + blinds: + text: blinds + curtains: + text: curtains + none: + text: none + ceil_cond_enum: + name: ceil_cond_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - oil phase: - text: oil phase - water phase: - text: water phase - biofilm: - text: biofilm - not applicable: - text: not applicable - other: - text: other + new: + text: new + visible wear: + text: visible wear + needs repair: + text: needs repair + damaged: + text: damaged + rupture: + text: rupture plant_growth_med_enum: name: plant_growth_med_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: other artificial liquid medium: text: other artificial liquid medium @@ -2353,445 +2207,231 @@ enums: text: vermiculite water: text: water - ext_wall_orient_enum: - name: ext_wall_orient_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - northeast: - text: northeast - southeast: - text: southeast - southwest: - text: southwest - northwest: - text: northwest - door_move_enum: - name: door_move_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - collapsible: - text: collapsible - folding: - text: folding - revolving: - text: revolving - rolling shutter: - text: rolling shutter - sliding: - text: sliding - swinging: - text: swinging - ceil_type_enum: - name: ceil_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - cathedral: - text: cathedral - dropped: - text: dropped - concave: - text: concave - barrel-shaped: - text: barrel-shaped - coffered: - text: coffered - cove: - text: cove - stretched: - text: stretched - heat_cool_type_enum: - name: heat_cool_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - radiant system: - text: radiant system - heat pump: - text: heat pump - forced air system: - text: forced air system - steam forced heat: - text: steam forced heat - wood stove: - text: wood stove - window_vert_pos_enum: - name: window_vert_pos_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - bottom: - text: bottom - middle: - text: middle - top: - text: top - low: - text: low - high: - text: high - indoor_space_enum: - name: indoor_space_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - bedroom: - text: bedroom - office: - text: office - bathroom: - text: bathroom - foyer: - text: foyer - kitchen: - text: kitchen - locker room: - text: locker room - hallway: - text: hallway - elevator: - text: elevator - tidal_stage_enum: - name: tidal_stage_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - low tide: - text: low tide - ebb tide: - text: ebb tide - flood tide: - text: flood tide - high tide: - text: high tide - wall_texture_enum: - name: wall_texture_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - crows feet: - text: crows feet - crows-foot stomp: - text: crows-foot stomp - ? '' - : text: '' - double skip: - text: double skip - hawk and trowel: - text: hawk and trowel - knockdown: - text: knockdown - popcorn: - text: popcorn - orange peel: - text: orange peel - rosebud stomp: - text: rosebud stomp - Santa-Fe texture: - text: Santa-Fe texture - skip trowel: - text: skip trowel - smooth: - text: smooth - stomp knockdown: - text: stomp knockdown - swirl: - text: swirl - door_type_enum: - name: door_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - composite: - text: composite - metal: - text: metal - wooden: - text: wooden - int_wall_cond_enum: - name: int_wall_cond_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + samp_md_enum: + name: samp_md_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - new: - text: new - visible wear: - text: visible wear - needs repair: - text: needs repair - damaged: - text: damaged - rupture: - text: rupture - profile_position_enum: - name: profile_position_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + DF: + text: DF + RT: + text: RT + KB: + text: KB + MSL: + text: MSL + other: + text: other + door_direct_enum: + name: door_direct_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - summit: - text: summit - shoulder: - text: shoulder - backslope: - text: backslope - footslope: - text: footslope - toeslope: - text: toeslope - arch_struc_enum: - name: arch_struc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + inward: + text: inward + outward: + text: outward + sideways: + text: sideways + sr_dep_env_enum: + name: sr_dep_env_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - building: - text: building - shed: - text: shed - home: - text: home - surf_material_enum: - name: surf_material_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + Lacustine: + text: Lacustine + Fluvioldeltaic: + text: Fluvioldeltaic + Fluviomarine: + text: Fluviomarine + Marine: + text: Marine + other: + text: other + window_mat_enum: + name: window_mat_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - adobe: - text: adobe - carpet: - text: carpet - cinder blocks: - text: cinder blocks - concrete: - text: concrete - hay bales: - text: hay bales - glass: - text: glass + clad: + text: clad + fiberglass: + text: fiberglass metal: text: metal - paint: - text: paint - plastic: - text: plastic - stainless steel: - text: stainless steel - stone: - text: stone - stucco: - text: stucco - tile: - text: tile vinyl: text: vinyl wood: text: wood - season_use_enum: - name: season_use_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - Spring: - text: Spring - Summer: - text: Summer - Fall: - text: Fall - Winter: - text: Winter - drainage_class_enum: - name: drainage_class_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - very poorly: - text: very poorly - poorly: - text: poorly - somewhat poorly: - text: somewhat poorly - moderately well: - text: moderately well - well: - text: well - excessively drained: - text: excessively drained - wall_loc_enum: - name: wall_loc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - biol_stat_enum: - name: biol_stat_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - wild: - text: wild - natural: - text: natural - semi-natural: - text: semi-natural - inbred line: - text: inbred line - breeder's line: - text: breeder's line - hybrid: - text: hybrid - clonal selection: - text: clonal selection - mutant: - text: mutant - sr_lithology_enum: - name: sr_lithology_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + sr_kerog_type_enum: + name: sr_kerog_type_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Clastic: - text: Clastic - Carbonate: - text: Carbonate - Coal: - text: Coal - Biosilicieous: - text: Biosilicieous + Type I: + text: Type I + Type II: + text: Type II + Type III: + text: Type III + Type IV: + text: Type IV other: text: other - hcr_geol_age_enum: - name: hcr_geol_age_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + window_horiz_pos_enum: + name: window_horiz_pos_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Archean: - text: Archean - Cambrian: - text: Cambrian - Carboniferous: - text: Carboniferous - Cenozoic: - text: Cenozoic - Cretaceous: - text: Cretaceous - Devonian: - text: Devonian - Jurassic: - text: Jurassic - Mesozoic: - text: Mesozoic - Neogene: - text: Neogene - Ordovician: - text: Ordovician - Paleogene: - text: Paleogene - Paleozoic: - text: Paleozoic - Permian: - text: Permian - Precambrian: - text: Precambrian - Proterozoic: - text: Proterozoic - Silurian: - text: Silurian - Triassic: - text: Triassic + left: + text: left + middle: + text: middle + right: + text: right + wall_finish_mat_enum: + name: wall_finish_mat_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + plaster: + text: plaster + gypsum plaster: + text: gypsum plaster + veneer plaster: + text: veneer plaster + gypsum board: + text: gypsum board + tile: + text: tile + terrazzo: + text: terrazzo + stone facing: + text: stone facing + acoustical treatment: + text: acoustical treatment + wood: + text: wood + metal: + text: metal + masonry: + text: masonry + depos_env_enum: + name: depos_env_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + Continental - Alluvial: + text: Continental - Alluvial + Continental - Aeolian: + text: Continental - Aeolian + Continental - Fluvial: + text: Continental - Fluvial + Continental - Lacustrine: + text: Continental - Lacustrine + Transitional - Deltaic: + text: Transitional - Deltaic + Transitional - Tidal: + text: Transitional - Tidal + Transitional - Lagoonal: + text: Transitional - Lagoonal + Transitional - Beach: + text: Transitional - Beach + Transitional - Lake: + text: Transitional - Lake + Marine - Shallow: + text: Marine - Shallow + Marine - Deep: + text: Marine - Deep + Marine - Reef: + text: Marine - Reef + Other - Evaporite: + text: Other - Evaporite + Other - Glacial: + text: Other - Glacial + Other - Volcanic: + text: Other - Volcanic other: text: other - fao_class_enum: - name: fao_class_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + indoor_surf_enum: + name: indoor_surf_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Acrisols: - text: Acrisols - Andosols: - text: Andosols - Arenosols: - text: Arenosols - Cambisols: - text: Cambisols - Chernozems: - text: Chernozems - Ferralsols: - text: Ferralsols - Fluvisols: - text: Fluvisols - Gleysols: - text: Gleysols - Greyzems: - text: Greyzems - Gypsisols: - text: Gypsisols - Histosols: - text: Histosols - Kastanozems: - text: Kastanozems - Lithosols: - text: Lithosols - Luvisols: - text: Luvisols - Nitosols: - text: Nitosols - Phaeozems: - text: Phaeozems - Planosols: - text: Planosols - Podzols: - text: Podzols - Podzoluvisols: - text: Podzoluvisols - Rankers: - text: Rankers - Regosols: - text: Regosols - Rendzinas: - text: Rendzinas - Solonchaks: - text: Solonchaks - Solonetz: - text: Solonetz - Vertisols: - text: Vertisols - Yermosols: - text: Yermosols - wall_const_type_enum: - name: wall_const_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + cabinet: + text: cabinet + ceiling: + text: ceiling + counter top: + text: counter top + door: + text: door + shelving: + text: shelving + vent cover: + text: vent cover + window: + text: window + wall: + text: wall + floor_water_mold_enum: + name: floor_water_mold_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - frame construction: - text: frame construction - joisted masonry: - text: joisted masonry - light noncombustible: - text: light noncombustible - masonry noncombustible: - text: masonry noncombustible - modified fire resistive: - text: modified fire resistive - fire resistive: - text: fire resistive - room_samp_pos_enum: - name: room_samp_pos_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + mold odor: + text: mold odor + wet floor: + text: wet floor + water stains: + text: water stains + wall discoloration: + text: wall discoloration + floor discoloration: + text: floor discoloration + ceiling discoloration: + text: ceiling discoloration + peeling paint or wallpaper: + text: peeling paint or wallpaper + bulging walls: + text: bulging walls + condensation: + text: condensation + freq_clean_enum: + name: freq_clean_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - north corner: - text: north corner - south corner: - text: south corner - west corner: - text: west corner - east corner: - text: east corner - northeast corner: - text: northeast corner - northwest corner: - text: northwest corner - southeast corner: - text: southeast corner - southwest corner: - text: southwest corner - center: - text: center + Daily: + text: Daily + Weekly: + text: Weekly + Monthly: + text: Monthly + Quarterly: + text: Quarterly + Annually: + text: Annually + other: + text: other + heat_cool_type_enum: + name: heat_cool_type_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + radiant system: + text: radiant system + heat pump: + text: heat pump + forced air system: + text: forced air system + steam forced heat: + text: steam forced heat + wood stove: + text: wood stove + door_comp_type_enum: + name: door_comp_type_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + metal covered: + text: metal covered + revolving: + text: revolving + sliding: + text: sliding + telescopic: + text: telescopic window_cond_enum: name: window_cond_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: damaged: text: damaged @@ -2803,127 +2443,183 @@ enums: text: rupture visible wear: text: visible wear - sr_geol_age_enum: - name: sr_geol_age_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + ceil_type_enum: + name: ceil_type_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Archean: - text: Archean - Cambrian: - text: Cambrian - Carboniferous: - text: Carboniferous - Cenozoic: - text: Cenozoic - Cretaceous: - text: Cretaceous - Devonian: - text: Devonian - Jurassic: - text: Jurassic - Mesozoic: - text: Mesozoic - Neogene: - text: Neogene - Ordovician: - text: Ordovician - Paleogene: - text: Paleogene - Paleozoic: - text: Paleozoic - Permian: - text: Permian - Precambrian: - text: Precambrian - Proterozoic: - text: Proterozoic - Silurian: - text: Silurian - Triassic: - text: Triassic + cathedral: + text: cathedral + dropped: + text: dropped + concave: + text: concave + barrel-shaped: + text: barrel-shaped + coffered: + text: coffered + cove: + text: cove + stretched: + text: stretched + biotic_relationship_enum: + name: biotic_relationship_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + free living: + text: free living + parasite: + text: parasite + commensal: + text: commensal + symbiont: + text: symbiont + samp_subtype_enum: + name: samp_subtype_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + oil phase: + text: oil phase + water phase: + text: water phase + biofilm: + text: biofilm + not applicable: + text: not applicable other: text: other - tillage_enum: - name: tillage_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + shading_device_type_enum: + name: shading_device_type_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - drill: - text: drill - cutting disc: - text: cutting disc - ridge till: - text: ridge till - strip tillage: - text: strip tillage - zonal tillage: - text: zonal tillage - chisel: - text: chisel - tined: - text: tined - mouldboard: - text: mouldboard - disc plough: - text: disc plough - heat_deliv_loc_enum: - name: heat_deliv_loc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + bahama shutters: + text: bahama shutters + exterior roll blind: + text: exterior roll blind + gambrel awning: + text: gambrel awning + hood awning: + text: hood awning + porchroller awning: + text: porchroller awning + sarasota shutters: + text: sarasota shutters + slatted aluminum: + text: slatted aluminum + solid aluminum awning: + text: solid aluminum awning + sun screen: + text: sun screen + tree: + text: tree + trellis: + text: trellis + venetian awning: + text: venetian awning + specific_enum: + name: specific_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - handidness_enum: - name: handidness_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + operation: + text: operation + as built: + text: as built + construction: + text: construction + bid: + text: bid + design: + text: design + photos: + text: photos + season_use_enum: + name: season_use_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + Spring: + text: Spring + Summer: + text: Summer + Fall: + text: Fall + Winter: + text: Winter + door_cond_enum: + name: door_cond_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - ambidexterity: - text: ambidexterity - left handedness: - text: left handedness - mixed-handedness: - text: mixed-handedness - right handedness: - text: right handedness - hcr_enum: - name: hcr_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + damaged: + text: damaged + needs repair: + text: needs repair + new: + text: new + rupture: + text: rupture + visible wear: + text: visible wear + quad_pos_enum: + name: quad_pos_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Oil Reservoir: - text: Oil Reservoir - Gas Reservoir: - text: Gas Reservoir - Oil Sand: - text: Oil Sand - Coalbed: - text: Coalbed - Shale: - text: Shale - Tight Oil Reservoir: - text: Tight Oil Reservoir - Tight Gas Reservoir: - text: Tight Gas Reservoir - other: - text: other - window_loc_enum: - name: window_loc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + North side: + text: North side + West side: + text: West side + South side: + text: South side + East side: + text: East side + samp_weather_enum: + name: samp_weather_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west + clear sky: + text: clear sky + cloudy: + text: cloudy + foggy: + text: foggy + hail: + text: hail + rain: + text: rain + snow: + text: snow + sleet: + text: sleet + sunny: + text: sunny + windy: + text: windy + room_connected_enum: + name: room_connected_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + attic: + text: attic + bathroom: + text: bathroom + closet: + text: closet + conference room: + text: conference room + elevator: + text: elevator + examining room: + text: examining room + hallway: + text: hallway + kitchen: + text: kitchen + mail room: + text: mail room + office: + text: office + stairwell: + text: stairwell gender_restroom_enum: name: gender_restroom_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: all gender: text: all gender @@ -2937,276 +2633,577 @@ enums: text: male and female unisex: text: unisex - ceil_texture_enum: - name: ceil_texture_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + host_sex_enum: + name: host_sex_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - crows feet: - text: crows feet - crows-foot stomp: - text: crows-foot stomp - double skip: - text: double skip - hawk and trowel: - text: hawk and trowel - knockdown: - text: knockdown - popcorn: - text: popcorn - orange peel: - text: orange peel - rosebud stomp: - text: rosebud stomp - Santa-Fe texture: - text: Santa-Fe texture - skip trowel: - text: skip trowel - smooth: - text: smooth - stomp knockdown: - text: stomp knockdown - swirl: - text: swirl - train_stat_loc_enum: - name: train_stat_loc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + female: + text: female + hermaphrodite: + text: hermaphrodite + male: + text: male + neuter: + text: neuter + weekday_enum: + name: weekday_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - south station above ground: - text: south station above ground - south station underground: - text: south station underground - south station amtrak: - text: south station amtrak - forest hills: - text: forest hills - riverside: - text: riverside - plant_sex_enum: - name: plant_sex_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + Monday: + text: Monday + Tuesday: + text: Tuesday + Wednesday: + text: Wednesday + Thursday: + text: Thursday + Friday: + text: Friday + Saturday: + text: Saturday + Sunday: + text: Sunday + surf_air_cont_enum: + name: surf_air_cont_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Androdioecious: - text: Androdioecious - Androecious: - text: Androecious - Androgynous: - text: Androgynous - Androgynomonoecious: - text: Androgynomonoecious - Andromonoecious: - text: Andromonoecious - Bisexual: - text: Bisexual - Dichogamous: - text: Dichogamous - Diclinous: - text: Diclinous - Dioecious: - text: Dioecious - Gynodioecious: - text: Gynodioecious - Gynoecious: - text: Gynoecious - Gynomonoecious: - text: Gynomonoecious - Hermaphroditic: - text: Hermaphroditic - Imperfect: - text: Imperfect - Monoclinous: - text: Monoclinous - Monoecious: - text: Monoecious - Perfect: - text: Perfect - Polygamodioecious: - text: Polygamodioecious - Polygamomonoecious: - text: Polygamomonoecious - Polygamous: - text: Polygamous - Protandrous: - text: Protandrous - Protogynous: - text: Protogynous - Subandroecious: - text: Subandroecious - Subdioecious: - text: Subdioecious - Subgynoecious: - text: Subgynoecious - Synoecious: - text: Synoecious - Trimonoecious: - text: Trimonoecious - Trioecious: - text: Trioecious - Unisexual: - text: Unisexual - door_loc_enum: - name: door_loc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + dust: + text: dust + organic matter: + text: organic matter + particulate matter: + text: particulate matter + volatile organic compounds: + text: volatile organic compounds + biological contaminants: + text: biological contaminants + radon: + text: radon + nutrients: + text: nutrients + biocides: + text: biocides + filter_type_enum: + name: filter_type_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + particulate air filter: + text: particulate air filter + chemical air filter: + text: chemical air filter + low-MERV pleated media: + text: low-MERV pleated media + HEPA: + text: HEPA + electrostatic: + text: electrostatic + gas-phase or ultraviolet air treatments: + text: gas-phase or ultraviolet air treatments + light_type_enum: + name: light_type_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west + natural light: + text: natural light + electric light: + text: electric light + desk lamp: + text: desk lamp + flourescent lights: + text: flourescent lights + none: + text: none + arch_struc_enum: + name: arch_struc_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + building: + text: building + shed: + text: shed + home: + text: home + wall_const_type_enum: + name: wall_const_type_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + frame construction: + text: frame construction + joisted masonry: + text: joisted masonry + light noncombustible: + text: light noncombustible + masonry noncombustible: + text: masonry noncombustible + modified fire resistive: + text: modified fire resistive + fire resistive: + text: fire resistive + occup_document_enum: + name: occup_document_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + automated count: + text: automated count + estimate: + text: estimate + manual count: + text: manual count + videos: + text: videos + drainage_class_enum: + name: drainage_class_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + very poorly: + text: very poorly + poorly: + text: poorly + somewhat poorly: + text: somewhat poorly + moderately well: + text: moderately well + well: + text: well + excessively drained: + text: excessively drained room_type_enum: name: room_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + attic: + text: attic + bathroom: + text: bathroom + closet: + text: closet + conference room: + text: conference room + elevator: + text: elevator + examining room: + text: examining room + hallway: + text: hallway + kitchen: + text: kitchen + mail room: + text: mail room + private office: + text: private office + open office: + text: open office + stairwell: + text: stairwell + ',restroom': + text: ',restroom' + lobby: + text: lobby + vestibule: + text: vestibule + mechanical or electrical room: + text: mechanical or electrical room + data center: + text: data center + laboratory_wet: + text: laboratory_wet + laboratory_dry: + text: laboratory_dry + gymnasium: + text: gymnasium + natatorium: + text: natatorium + auditorium: + text: auditorium + lockers: + text: lockers + cafe: + text: cafe + warehouse: + text: warehouse + room_loc_enum: + name: room_loc_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + corner room: + text: corner room + interior room: + text: interior room + exterior wall: + text: exterior wall + int_wall_cond_enum: + name: int_wall_cond_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + new: + text: new + visible wear: + text: visible wear + needs repair: + text: needs repair + damaged: + text: damaged + rupture: + text: rupture + cur_land_use_enum: + name: cur_land_use_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + badlands: + text: badlands + cities: + text: cities + conifers: + text: conifers + annotations: + originally: + tag: originally + value: conifers (e.g. pine,spruce,fir,cypress) + examples: + - value: cypress + - value: fir + - value: pine + - value: spruce + crop trees: + text: crop trees + annotations: + originally: + tag: originally + value: crop trees (nuts,fruit,christmas trees,nursery trees) + examples: + - value: christmas trees + - value: fruit + - value: nursery trees + - value: nuts + farmstead: + text: farmstead + gravel: + text: gravel + hardwoods: + text: hardwoods + annotations: + originally: + tag: originally + value: hardwoods (e.g. oak,hickory,elm,aspen) + examples: + - value: aspen + - value: elm + - value: hickory + - value: oak + hayland: + text: hayland + horticultural plants: + text: horticultural plants + annotations: + originally: + tag: originally + value: horticultural plants (e.g. tulips) + examples: + - value: tulips + industrial areas: + text: industrial areas + intermixed hardwood and conifers: + text: intermixed hardwood and conifers + marshlands: + text: marshlands + annotations: + originally: + tag: originally + value: marshlands (grass,sedges,rushes) + examples: + - value: grass + - value: rushes + - value: sedgees + meadows: + text: meadows + annotations: + originally: + tag: originally + value: meadows (grasses,alfalfa,fescue,bromegrass,timothy) + examples: + - value: alfalfa + - value: bromegrass + - value: fescue + - value: grasses + - value: timothy + mines/quarries: + text: mines/quarries + mudflats: + text: mudflats + oil waste areas: + text: oil waste areas + pastureland: + text: pastureland + annotations: + originally: + tag: originally + value: pastureland (grasslands used for livestock grazing) + comments: + - grasslands used for livestock grazing + permanent snow or ice: + text: permanent snow or ice + rainforest: + text: rainforest + annotations: + originally: + tag: originally + value: rainforest (evergreen forest receiving greater than 406 cm annual + rainfall) + comments: + - evergreen forest receiving greater than 406 cm annual rainfall + rangeland: + text: rangeland + roads/railroads: + text: roads/railroads + rock: + text: rock + row crops: + text: row crops + saline seeps: + text: saline seeps + salt flats: + text: salt flats + sand: + text: sand + shrub crops: + text: shrub crops + annotations: + originally: + tag: originally + value: shrub crops (blueberries,nursery ornamentals,filberts) + examples: + - value: blueberries + - value: filberts + - value: nursery ornamentals + shrub land: + text: shrub land + annotations: + originally: + tag: originally + value: shrub land (e.g. mesquite,sage-brush,creosote bush,shrub oak,eucalyptus) + examples: + - value: creosote bush + - value: eucalyptus + - value: mesquite + - value: sage-brush + - value: shrub oak + small grains: + text: small grains + successional shrub land: + text: successional shrub land + annotations: + originally: + tag: originally + value: successional shrub land (tree saplings,hazels,sumacs,chokecherry,shrub + dogwoods,blackberries) + examples: + - value: blackberries + - value: chokecherry + - value: hazels + - value: shrub dogwoods + - value: sumacs + - value: tree saplings + swamp: + text: swamp + annotations: + originally: + tag: originally + value: swamp (permanent or semi-permanent water body dominated by woody + plants) + comments: + - permanent or semi-permanent water body dominated by woody plants + tropical: + text: tropical + annotations: + originally: + tag: originally + value: tropical (e.g. mangrove,palms) + examples: + - value: mangrove + - value: palms + tundra: + text: tundra + annotations: + originally: + tag: originally + value: tundra (mosses,lichens) + examples: + - value: lichens + - value: mosses + vegetable crops: + text: vegetable crops + vine crops: + text: vine crops + annotations: + originally: + tag: originally + value: vine crops (grapes) + examples: + - value: grapes + door_mat_enum: + name: door_mat_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - attic: - text: attic - bathroom: - text: bathroom - closet: - text: closet - conference room: - text: conference room - elevator: - text: elevator - examining room: - text: examining room - hallway: - text: hallway - kitchen: - text: kitchen - mail room: - text: mail room - private office: - text: private office - open office: - text: open office - stairwell: - text: stairwell - ',restroom': - text: ',restroom' - lobby: - text: lobby - vestibule: - text: vestibule - mechanical or electrical room: - text: mechanical or electrical room - data center: - text: data center - laboratory_wet: - text: laboratory_wet - laboratory_dry: - text: laboratory_dry - gymnasium: - text: gymnasium - natatorium: - text: natatorium - auditorium: - text: auditorium - lockers: - text: lockers - cafe: - text: cafe - warehouse: - text: warehouse - samp_capt_status_enum: - name: samp_capt_status_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + aluminum: + text: aluminum + cellular PVC: + text: cellular PVC + engineered plastic: + text: engineered plastic + fiberboard: + text: fiberboard + fiberglass: + text: fiberglass + metal: + text: metal + thermoplastic alloy: + text: thermoplastic alloy + vinyl: + text: vinyl + wood: + text: wood + wood/plastic composite: + text: wood/plastic composite + fao_class_enum: + name: fao_class_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - active surveillance in response to an outbreak: - text: active surveillance in response to an outbreak - active surveillance not initiated by an outbreak: - text: active surveillance not initiated by an outbreak - farm sample: - text: farm sample - market sample: - text: market sample - other: - text: other + Acrisols: + text: Acrisols + Andosols: + text: Andosols + Arenosols: + text: Arenosols + Cambisols: + text: Cambisols + Chernozems: + text: Chernozems + Ferralsols: + text: Ferralsols + Fluvisols: + text: Fluvisols + Gleysols: + text: Gleysols + Greyzems: + text: Greyzems + Gypsisols: + text: Gypsisols + Histosols: + text: Histosols + Kastanozems: + text: Kastanozems + Lithosols: + text: Lithosols + Luvisols: + text: Luvisols + Nitosols: + text: Nitosols + Phaeozems: + text: Phaeozems + Planosols: + text: Planosols + Podzols: + text: Podzols + Podzoluvisols: + text: Podzoluvisols + Rankers: + text: Rankers + Regosols: + text: Regosols + Rendzinas: + text: Rendzinas + Solonchaks: + text: Solonchaks + Solonetz: + text: Solonetz + Vertisols: + text: Vertisols + Yermosols: + text: Yermosols slots: neon_deims_sdr_link: name: neon_deims_sdr_link - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string neon_eco_type: name: neon_eco_type - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string neon_soil_type: name: neon_soil_type - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string ecosystem_path_id: name: ecosystem_path_id description: A unique id representing the GOLD classifers associated with a sample. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string habitat: name: habitat - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string location: name: location - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string community: name: community - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string ncbi_taxonomy_name: name: ncbi_taxonomy_name - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string ncbi_project_name: name: ncbi_project_name - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string sample_collection_site: name: sample_collection_site - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string sample_collection_year: name: sample_collection_year - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer sample_collection_month: name: sample_collection_month - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc status: name: status - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: StatusEnum library_preparation_kit: name: library_preparation_kit - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string extraction_method: name: extraction_method - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc extraction_target: name: extraction_target - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: ExtractionTargetEnum quality_control_report: name: quality_control_report - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: QualityControlReport pcr_cycles: name: pcr_cycles - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc exact_mappings: - OBI:0002475 range: integer sample_mass: name: sample_mass - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: QuantityValue library_type: name: library_type title: library type examples: - value: DNA - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: LibraryTypeEnum zinc: name: zinc @@ -3224,7 +3221,7 @@ slots: title: zinc examples: - value: 2.5 mg/kg - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://www.ornl.gov/content/bio-scales-0 aliases: @@ -3247,7 +3244,7 @@ slots: title: manganese examples: - value: 24.7 mg/kg - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://www.ornl.gov/content/bio-scales-0 aliases: @@ -3270,7 +3267,7 @@ slots: title: ammonium nitrogen examples: - value: 2.3 mg/kg - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://www.ornl.gov/content/bio-scales-0 aliases: @@ -3296,7 +3293,7 @@ slots: - often below some specified limit of detection examples: - value: 0.29 mg/kg - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://www.ornl.gov/content/bio-scales-0 aliases: @@ -3320,7 +3317,7 @@ slots: title: nitrite_nitrogen examples: - value: 1.2 mg/kg - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://www.ornl.gov/content/bio-scales-0 aliases: @@ -3347,7 +3344,7 @@ slots: one pH unit examples: - value: 543 mg/kg - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://www.ornl.gov/content/bio-scales-0 - https://secure.caes.uga.edu/extension/publications/files/pdf/C%20874_5.PDF @@ -3376,7 +3373,7 @@ slots: one pH unit examples: - value: 1575 mg/kg - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://www.ornl.gov/content/bio-scales-0 aliases: @@ -3393,7 +3390,7 @@ slots: subtables and can be reported in_subset: - mixs extension - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - environmental package is_a: attribute @@ -3406,7 +3403,7 @@ slots: - first apply to Biosample - try to apply to all Biosamples in a particular nmdc-server SubmissionMetadata? - applying to a Study may nto be granular enough - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: boolean recommended: true collected_from: @@ -3416,43 +3413,43 @@ slots: - add an OBO slot_uri ? comments: - this illustrates implementing a Biosample relation with a (binary) slot - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc domain: Biosample range: FieldResearchSite biosample_categories: name: biosample_categories title: Categories the biosample belongs to - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: true range: biosample_category_enum date_created: name: date_created description: from database class - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc etl_software_version: name: etl_software_version description: from database class - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc related_identifiers: name: related_identifiers description: Identifiers assigned to a thing that is similar to that which is represented in NMDC. Related identifier are not an identical match and may have some variation. title: Related Identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc notes: name: notes description: from study class - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc canary: name: canary description: a slot that can be added and removed as evidence that schema changes have propagated to other systems - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc ess_dive_datasets: name: ess_dive_datasets description: List of ESS-DIVE dataset DOIs - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: true has_credit_associations: name: has_credit_associations @@ -3465,7 +3462,7 @@ slots: semantics: person should get credit X for their participation in the study' notes: - 'had just been "inlined: true"' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc domain: Study slot_uri: prov:qualifiedAssociation multivalued: true @@ -3474,26 +3471,26 @@ slots: study_image: name: study_image description: Links a study to one or more images. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc domain: Study multivalued: true range: ImageValue inlined: true relevant_protocols: name: relevant_protocols - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: true range: string funding_sources: name: funding_sources - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: true range: string applied_role: name: applied_role deprecated: A credit association may have multiple roles. So, use the applied roles slot. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc domain: CreditAssociation slot_uri: prov:hadRole range: credit enum @@ -3505,7 +3502,7 @@ slots: value: 'Identify all CRediT roles associated with this contributor. CRediT Information: https://info.orcid.org/credit-for-research-contribution ; CRediT: https://credit.niso.org/' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc domain: CreditAssociation multivalued: true range: credit enum @@ -3516,7 +3513,7 @@ slots: - prov:agent takes an Agent object. Is a person value an Agent? Also try to relate to principal investigator slot? could include OBI:0000103 principal investigator role... do we need to define the OBI prefix? - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc domain: CreditAssociation range: PersonValue required: true @@ -3525,7 +3522,7 @@ slots: description: Applies to a property that links a database object to a set of objects. This is necessary in a json document to provide context for a list, and to allow for a single json object that combines multiple object types - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixin: true domain: Database multivalued: true @@ -3534,7 +3531,7 @@ slots: name: biosample_set description: This property links a database object to the set of samples within it. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3544,7 +3541,7 @@ slots: name: study_set description: This property links a database object to the set of studies within it. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3552,14 +3549,14 @@ slots: range: Study field_research_site_set: name: field_research_site_set - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc domain: Database multivalued: true range: FieldResearchSite inlined_as_list: true collecting_biosamples_from_site_set: name: collecting_biosamples_from_site_set - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc domain: Database multivalued: true range: CollectingBiosamplesFromSite @@ -3568,7 +3565,7 @@ slots: name: data_object_set description: This property links a database object to the set of data objects within it. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3577,7 +3574,7 @@ slots: genome_feature_set: name: genome_feature_set description: This property links a database object to the set of all features - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3587,7 +3584,7 @@ slots: name: functional_annotation_set description: This property links a database object to the set of all functional annotations - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3596,7 +3593,7 @@ slots: activity_set: name: activity_set description: This property links a database object to the set of workflow activities. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3606,7 +3603,7 @@ slots: name: mags_activity_set description: This property links a database object to the set of MAGs analysis activities. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3616,7 +3613,7 @@ slots: name: metabolomics_analysis_activity_set description: This property links a database object to the set of metabolomics analysis activities. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3626,7 +3623,7 @@ slots: name: metaproteomics_analysis_activity_set description: This property links a database object to the set of metaproteomics analysis activities. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3636,7 +3633,7 @@ slots: name: metagenome_annotation_activity_set description: This property links a database object to the set of metagenome annotation activities. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3646,7 +3643,7 @@ slots: name: metagenome_assembly_set description: This property links a database object to the set of metagenome assembly activities. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3656,7 +3653,7 @@ slots: name: metagenome_sequencing_activity_set description: This property links a database object to the set of metagenome sequencing activities. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3666,7 +3663,7 @@ slots: name: metatranscriptome_activity_set description: This property links a database object to the set of metatranscriptome analysis activities. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3676,7 +3673,7 @@ slots: name: read_qc_analysis_activity_set description: This property links a database object to the set of read QC analysis activities. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3686,7 +3683,7 @@ slots: name: read_based_taxonomy_analysis_activity_set description: This property links a database object to the set of read based analysis activities. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3696,7 +3693,7 @@ slots: name: nom_analysis_activity_set description: This property links a database object to the set of natural organic matter (NOM) analysis activities. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3706,7 +3703,7 @@ slots: name: omics_processing_set description: This property links a database object to the set of omics processings within it. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3714,7 +3711,7 @@ slots: range: OmicsProcessing pooling_set: name: pooling_set - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3724,7 +3721,7 @@ slots: name: processed_sample_set description: This property links a database object to the set of processed samples within it. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3734,7 +3731,7 @@ slots: name: extraction_set description: This property links a database object to the set of extractions within it. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3744,7 +3741,7 @@ slots: name: library_preparation_set description: This property links a database object to the set of DNA extractions within it. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - library_construction_set mixins: @@ -3761,7 +3758,7 @@ slots: examples: - value: metatranscriptome - value: metagenome - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: ControlledTermValue data_object_type: name: data_object_type @@ -3769,7 +3766,7 @@ slots: examples: - value: FT ICR-MS Analysis Results - value: GC-MS Metabolomics Results - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: file type enum compression_type: name: compression_type @@ -3778,16 +3775,16 @@ slots: - consider enum examples: - value: gzip - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string instrument_name: name: instrument_name description: The name of the instrument that was used for processing the sample. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc gold_path_field: name: gold_path_field description: This is a grouping for any of the gold path fields - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: attribute abstract: true range: string @@ -3804,7 +3801,7 @@ slots: are Environmental, Host-associated, and Engineered. They represent samples collected from a natural environment or from another organism or from engineered environments like bioreactors respectively. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://gold.jgi.doe.gov/help is_a: gold_path_field @@ -3818,7 +3815,7 @@ slots: Ecosystem categories for Host-associated samples can be individual hosts or phyla and for engineered samples it may be manipulated environments like bioreactors, solid waste etc. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://gold.jgi.doe.gov/help is_a: gold_path_field @@ -3833,7 +3830,7 @@ slots: or Thermal springs etc. Ecosystem category Air may have Indoor air or Outdoor air as different Ecosystem Types. In the case of Host-associated samples, ecosystem type can represent Respiratory system, Digestive system, Roots etc. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://gold.jgi.doe.gov/help is_a: gold_path_field @@ -3846,7 +3843,7 @@ slots: - Ecosystem Type Marine (Environmental -> Aquatic -> Marine) is further divided (for example) into Intertidal zone, Coastal, Pelagic, Intertidal zone etc. in the Ecosystem subtype category. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://gold.jgi.doe.gov/help is_a: gold_path_field @@ -3858,44 +3855,44 @@ slots: comments: - Specific ecosystems help to define samples based on very specific characteristics of an environment under the five-level classification system. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://gold.jgi.doe.gov/help is_a: gold_path_field principal_investigator: name: principal_investigator description: Principal Investigator who led the study and/or generated the dataset. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - PI is_a: attribute range: PersonValue doi: name: doi - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: attribute range: AttributeValue add_date: name: add_date description: The date on which the information was added to the database. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string mod_date: name: mod_date description: The last date on which the database information was modified. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string sample_collection_day: name: sample_collection_day - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer sample_collection_hour: name: sample_collection_hour - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer sample_collection_minute: name: sample_collection_minute - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer salinity_category: name: salinity_category @@ -3903,91 +3900,91 @@ slots: halotolerant, hypersaline, huryhaline' notes: - maps to gold:salinity - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://github.com/microbiomedata/nmdc-metadata/pull/297 range: string soluble_iron_micromol: name: soluble_iron_micromol - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string host_name: name: host_name - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string subsurface_depth: name: subsurface_depth - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: QuantityValue proport_woa_temperature: name: proport_woa_temperature - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string biogas_temperature: name: biogas_temperature - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string soil_annual_season_temp: name: soil_annual_season_temp - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string biogas_retention_time: name: biogas_retention_time - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string processing_institution: name: processing_institution description: The organization that processed the sample. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: processing_institution_enum completion_date: name: completion_date - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string metagenome_assembly_parameter: name: metagenome_assembly_parameter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc has_peptide_quantifications: name: has_peptide_quantifications - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: true range: PeptideQuantification asm_score: name: asm_score description: A score for comparing metagenomic assembly quality from same sample. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float scaffolds: name: scaffolds description: Total sequence count of all scaffolds. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float scaf_logsum: name: scaf_logsum description: The sum of the (length*log(length)) of all scaffolds, times some constant. Increase the contiguity, the score will increase - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float scaf_powsum: name: scaf_powsum description: Powersum of all scaffolds is the same as logsum except that it uses the sum of (length*(length^P)) for some power P (default P=0.25). - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float scaf_max: name: scaf_max description: Maximum scaffold length. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float scaf_bp: name: scaf_bp description: Total size in bp of all scaffolds. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float scaf_n50: @@ -3995,7 +3992,7 @@ slots: description: Given a set of scaffolds, each with its own length, the N50 count is defined as the smallest number of scaffolds whose length sum makes up half of genome size. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float scaf_n90: @@ -4003,14 +4000,14 @@ slots: description: Given a set of scaffolds, each with its own length, the N90 count is defined as the smallest number of scaffolds whose length sum makes up 90% of genome size. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float scaf_l50: name: scaf_l50 description: Given a set of scaffolds, the L50 is defined as the sequence length of the shortest scaffold at 50% of the total genome length. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float scaf_l90: @@ -4018,38 +4015,38 @@ slots: description: The L90 statistic is less than or equal to the L50 statistic; it is the length for which the collection of all scaffolds of that length or longer contains at least 90% of the sum of the lengths of all scaffolds. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float scaf_n_gt50k: name: scaf_n_gt50k description: Total sequence count of scaffolds greater than 50 KB. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float scaf_l_gt50k: name: scaf_l_gt50k description: Total size in bp of all scaffolds greater than 50 KB. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float scaf_pct_gt50k: name: scaf_pct_gt50k description: Total sequence size percentage of scaffolds greater than 50 KB. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float contigs: name: contigs description: The sum of the (length*log(length)) of all contigs, times some constant. Increase the contiguity, the score will increase - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float contig_bp: name: contig_bp description: Total size in bp of all contigs. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float ctg_n50: @@ -4057,14 +4054,14 @@ slots: description: Given a set of contigs, each with its own length, the N50 count is defined as the smallest number_of_contigs whose length sum makes up half of genome size. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float ctg_l50: name: ctg_l50 description: Given a set of contigs, the L50 is defined as the sequence length of the shortest contig at 50% of the total genome length. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float ctg_n90: @@ -4072,7 +4069,7 @@ slots: description: Given a set of contigs, each with its own length, the N90 count is defined as the smallest number of contigs whose length sum makes up 90% of genome size. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float ctg_l90: @@ -4080,221 +4077,221 @@ slots: description: The L90 statistic is less than or equal to the L50 statistic; it is the length for which the collection of all contigs of that length or longer contains at least 90% of the sum of the lengths of all contigs. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float ctg_logsum: name: ctg_logsum description: Maximum contig length. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float ctg_powsum: name: ctg_powsum description: Powersum of all contigs is the same as logsum except that it uses the sum of (length*(length^P)) for some power P (default P=0.25). - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float ctg_max: name: ctg_max description: Maximum contig length. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float gap_pct: name: gap_pct description: The gap size percentage of all scaffolds. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float gc_std: name: gc_std description: Standard deviation of GC content of all contigs. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float gc_avg: name: gc_avg description: Average of GC content of all contigs. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float num_input_reads: name: num_input_reads description: The sequence count number of input reads for assembly. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float num_aligned_reads: name: num_aligned_reads description: The sequence count number of input reads aligned to assembled contigs. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float read_qc_analysis_statistic: name: read_qc_analysis_statistic - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mags_list: name: mags_list - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: true range: MagBin too_short_contig_num: name: too_short_contig_num - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer binned_contig_num: name: binned_contig_num - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer input_contig_num: name: input_contig_num - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer unbinned_contig_num: name: unbinned_contig_num - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer low_depth_contig_num: name: low_depth_contig_num - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer input_read_count: name: input_read_count description: The sequence count number of input reads for QC analysis. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: read_qc_analysis_statistic range: float input_base_count: name: input_base_count description: The nucleotide base count number of input reads for QC analysis. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: read_qc_analysis_statistic range: float output_read_count: name: output_read_count description: After QC analysis sequence count number. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: read_qc_analysis_statistic range: float output_base_count: name: output_base_count description: After QC analysis nucleotide base count number. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: read_qc_analysis_statistic range: float output_read_bases: name: output_read_bases description: TODO - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: float input_read_bases: name: input_read_bases description: 'TODO ' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: float has_calibration: name: has_calibration description: A reference to a file that holds calibration information. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string has_metabolite_quantifications: name: has_metabolite_quantifications - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: true range: MetaboliteQuantification version: name: version - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc total_bases: name: total_bases todos: - this slot needs some basic textual annotations and constraints - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc members_id: name: members_id todos: - this slot needs some basic textual annotations and constraints - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc bin_name: name: bin_name - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string number_of_contig: name: number_of_contig - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer completeness: name: completeness - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: float contamination: name: contamination - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: float gene_count: name: gene_count - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer bin_quality: name: bin_quality - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string num_16s: name: num_16s - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer num_5s: name: num_5s - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer num_23s: name: num_23s - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer num_t_rna: name: num_t_rna - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer gtdbtk_domain: name: gtdbtk_domain - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string gtdbtk_phylum: name: gtdbtk_phylum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string gtdbtk_class: name: gtdbtk_class - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string gtdbtk_order: name: gtdbtk_order - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string gtdbtk_family: name: gtdbtk_family - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string gtdbtk_genus: name: gtdbtk_genus - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string gtdbtk_species: name: gtdbtk_species - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string language: name: language description: Should use ISO 639-1 code e.g. "en", "fr" - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: language code attribute: name: attribute description: 'A attribute of a biosample. Examples: depth, habitat, material. For NMDC, attributes SHOULD be mapped to terms within a MIxS template' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - field - property @@ -4306,14 +4303,14 @@ slots: name: has_raw_value description: The value that was specified for an annotation in raw form, i.e. a string. E.g. "2 cm" or "2-4 cm" - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc domain: AttributeValue multivalued: false range: string has_unit: name: has_unit description: Links a QuantityValue to a unit - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - scale mappings: @@ -4323,7 +4320,7 @@ slots: has_numeric_value: name: has_numeric_value description: Links a quantity value to a number - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mappings: - qud:quantityValue - schema:value @@ -4333,18 +4330,18 @@ slots: name: has_minimum_numeric_value description: The minimum value part, expressed as number, of the quantity value when the value covers a range. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: has_numeric_value has_maximum_numeric_value: name: has_maximum_numeric_value description: The maximum value part, expressed as number, of the quantity value when the value covers a range. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: has_numeric_value has_boolean_value: name: has_boolean_value description: Links a quantity value to a boolean - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: false range: boolean latitude: @@ -4352,7 +4349,7 @@ slots: description: latitude examples: - value: '-33.460524' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mappings: - schema:latitude domain: GeolocationValue @@ -4363,7 +4360,7 @@ slots: description: longitude examples: - value: '150.168149' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mappings: - schema:longitude domain: GeolocationValue @@ -4374,38 +4371,38 @@ slots: description: pointer to an ontology class notes: - 'removed ''slot_uri: rdf:type''' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc domain: ControlledTermValue range: OntologyClass inlined: true orcid: name: orcid description: The ORCID of a person. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc domain: PersonValue range: string email: name: email description: An email address for an entity such as a person. This should be the primary email address used. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc slot_uri: schema:email range: string alternate_emails: name: alternate_emails description: One or more other email addresses for an entity. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string profile_image_url: name: profile_image_url description: A url that points to an image of a person. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc domain: PersonValue range: string has_input: name: has_input description: An input to a process. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - input domain: NamedThing @@ -4414,7 +4411,7 @@ slots: has_output: name: has_output description: An output biosample to a processing step - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - output domain: NamedThing @@ -4424,7 +4421,7 @@ slots: name: part_of description: Links a resource to another resource that either logically or physically includes it. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - is part of domain: NamedThing @@ -4434,44 +4431,44 @@ slots: execution_resource: name: execution_resource description: 'Example: NERSC-Cori' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: attribute url: name: url notes: - See issue 207 - this clashes with the mixs field - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: attribute range: string display_order: name: display_order description: When rendering information, this attribute to specify the order in which the information should be rendered. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: attribute git_url: name: git_url description: 'Example: https://github.com/microbiomedata/mg_annotation/releases/tag/0.1' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: attribute range: string file_size_bytes: name: file_size_bytes description: Size of the file in bytes - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: attribute range: bytes md5_checksum: name: md5_checksum description: MD5 checksum of file (pre-compressed) - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: attribute range: string abstract: name: abstract description: The abstract of manuscript/grant associated with the entity; i.e., a summary of the resource. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc exact_mappings: - dcterms:abstract range: string @@ -4479,7 +4476,7 @@ slots: name: keywords description: A list of keywords that used to associate the entity. Keywords SHOULD come from controlled vocabularies, including MESH, ENVO. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mappings: - dcterms:subject multivalued: true @@ -4488,7 +4485,7 @@ slots: name: objective description: The scientific objectives associated with the entity. It SHOULD correspond to scientific norms for objectives field in a structured abstract. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mappings: - sio:000337 multivalued: false @@ -4496,95 +4493,95 @@ slots: websites: name: websites description: A list of websites that are associated with the entity. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: true range: string publications: name: publications description: A list of publications that are associated with the entity. The publications SHOULD be given using an identifier, such as a DOI or Pubmed ID, if possible. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: true range: string highest_similarity_score: name: highest_similarity_score description: 'TODO: Yuri to fill in' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: float metabolite_quantified: name: metabolite_quantified description: the specific metabolite identifier - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: ChemicalEntity all_proteins: name: all_proteins description: the list of protein identifiers that are associated with the peptide sequence - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: true range: GeneProduct best_protein: name: best_protein description: the specific protein identifier most correctly associated with the peptide sequence - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: GeneProduct min_q_value: name: min_q_value description: smallest Q-Value associated with the peptide sequence as provided by MSGFPlus tool - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - OBI:0001442 range: float peptide_sequence: name: peptide_sequence - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string peptide_spectral_count: name: peptide_spectral_count description: sum of filter passing MS2 spectra associated with the peptide sequence within a given LC-MS/MS data file - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer peptide_sum_masic_abundance: name: peptide_sum_masic_abundance description: combined MS1 extracted ion chromatograms derived from MS2 spectra associated with the peptide sequence from a given LC-MS/MS data file using the MASIC tool - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer chemical_formula: name: chemical_formula - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc inchi_key: name: inchi_key notes: - 'key set to false due to rare collisions: Pletnev I, Erin A, McNaught A, Blinov K, Tchekhovskoi D, Heller S (2012) InChIKey collision resistance: an experimental testing. J Cheminform. 4:12' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc inchi: name: inchi - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc peptide_sequence_count: name: peptide_sequence_count - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc protein_spectral_count: name: protein_spectral_count - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc protein_sum_masic_abundance: name: protein_sum_masic_abundance - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc smiles: name: smiles - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc started_at_time: name: started_at_time notes: - 'The regex for ISO-8601 format was taken from here: https://www.myintervals.com/blog/2009/05/20/iso-8601-date-validation-that-doesnt-suck/ It may not be complete, but it is good enough for now.' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mappings: - prov:startedAtTime range: datetime @@ -4594,26 +4591,26 @@ slots: notes: - 'The regex for ISO-8601 format was taken from here: https://www.myintervals.com/blog/2009/05/20/iso-8601-date-validation-that-doesnt-suck/ It may not be complete, but it is good enough for now.' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mappings: - prov:endedAtTime range: datetime pattern: ^([\+-]?\d{4}(?!\d{2}\b))((-?)((0[1-9]|1[0-2])(\3([12]\d|0[1-9]|3[01]))?|W([0-4]\d|5[0-2])(-?[1-7])?|(00[1-9]|0[1-9]\d|[12]\d{2}|3([0-5]\d|6[1-6])))([T\s]((([01]\d|2[0-3])((:?)[0-5]\d)?|24\:?00)([\.,]\d+(?!:))?)?(\17[0-5]\d([\.,]\d+)?)?([zZ]|([\+-])([01]\d|2[0-3]):?([0-5]\d)?)?)?)?$ was_informed_by: name: was_informed_by - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mappings: - prov:wasInformedBy range: Activity was_generated_by: name: was_generated_by - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mappings: - prov:wasGeneratedBy range: Activity used: name: used - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mappings: - prov:used domain: Activity @@ -4632,19 +4629,19 @@ slots: examples: - value: nmdc:mgmag-00-x012.1_7_c1 description: https://github.com/microbiomedata/nmdc-schema/pull/499#discussion_r1018499248 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc identifier: true range: uriorcurie required: true name: name: name description: A human readable label for an entity - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string description: name: description description: a human-readable description of a thing - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc slot_uri: dcterms:description range: string type: @@ -4657,7 +4654,7 @@ slots: examples: - value: nmdc:Biosample - value: nmdc:Study - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string title: name: title @@ -4665,7 +4662,7 @@ slots: assigned to it. For example, when extracting study information for GOLD, the GOLD system has assigned a name/label. However, for display purposes, we may also wish the capture the title of the proposal that was used to fund the study. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc exact_mappings: - dcterms:title range: string @@ -4673,7 +4670,7 @@ slots: name: alternative_titles description: A list of alternative titles for the entity. The distinction between title and alternative titles is application-specific. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc exact_mappings: - dcterms:alternative multivalued: true @@ -4682,7 +4679,7 @@ slots: name: alternative_names description: A list of alternative names used to refer to the entity. The distinction between name and alternative names is application-specific. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc exact_mappings: - dcterms:alternative - skos:altLabel @@ -4692,13 +4689,13 @@ slots: name: alternative_descriptions description: A list of alternative descriptions for the entity. The distinction between description and alternative descriptions is application-specific. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: true range: string alternative_identifiers: name: alternative_identifiers description: A list of alternative identifiers for the entity. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: true range: uriorcurie pattern: ^[a-zA-Z_][a-zA-Z0-9_]*:[a-zA-Z_][a-zA-Z0-9_]*$ @@ -4711,7 +4708,7 @@ slots: - We are using string representations of dates until all components of our ecosystem can handle ISO 8610 dates - The date should be formatted as YYYY-MM-DD - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string end_date: name: end_date @@ -4722,19 +4719,19 @@ slots: - We are using string representations of dates until all components of our ecosystem can handle ISO 8610 dates - The date should be formatted as YYYY-MM-DD - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string protocol_link: name: protocol_link - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: Protocol nucleic_acid_concentration: name: nucleic_acid_concentration - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: InstrumentValue biomaterial_purity: name: biomaterial_purity - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: QuantityValue external_database_identifiers: name: external_database_identifiers @@ -4743,7 +4740,7 @@ slots: - had tried ranges of external identifier and string comments: - The value of this field is always a registered CURIE - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc close_mappings: - skos:closeMatch is_a: alternative_identifiers @@ -4760,26 +4757,26 @@ slots: - add is_a or mixin modeling, like other external_database_identifiers - what class would IMG records belong to?! Are they Studies, Biosamples, or something else? - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: external_database_identifiers pattern: ^img\.taxon:[a-zA-Z0-9_][a-zA-Z0-9_\/\.]*$ igsn_identifiers: name: igsn_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixin: true gold_identifiers: name: gold_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://gold.jgi.doe.gov/ mixin: true emsl_identifiers: name: emsl_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixin: true mgnify_identifiers: name: mgnify_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://www.ebi.ac.uk/metagenomics/ mixin: true @@ -4792,7 +4789,7 @@ slots: the initial submission - 'the first letter of the accession indicates which partner accepted the initial submission: E for ENA, D for DDBJ, or S or N for NCBI.' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://www.insdc.org/ - https://ena-docs.readthedocs.io/en/latest/submit/general-guide/accessions.html @@ -4804,30 +4801,30 @@ slots: massive_identifiers: name: massive_identifiers description: identifiers for entities according to MASSIVE - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixin: true neon_identifiers: name: neon_identifiers description: identifiers for entities according to NEON - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixin: true jgi_portal_identifiers: name: jgi_portal_identifiers description: identifiers for entities according to JGI Portal - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixin: true gnps_identifiers: name: gnps_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixin: true study_identifiers: name: study_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: external_database_identifiers abstract: true neon_study_identifiers: name: neon_study_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: study_identifiers mixins: - neon_identifiers @@ -4838,7 +4835,7 @@ slots: - value: https://identifiers.org/insdc.sra:SRP121659 description: Avena fatua rhizosphere microbial communities - H1_Rhizo_Litter_2 metatranscriptome - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://github.com/bioregistry/bioregistry/issues/109 - https://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=studies @@ -4861,7 +4858,7 @@ slots: - value: https://identifiers.org/bioproject:PRJNA366857 description: Avena fatua rhizosphere microbial communities - H1_Rhizo_Litter_2 metatranscriptome - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://www.ncbi.nlm.nih.gov/bioproject/ - https://www.ddbj.nig.ac.jp/bioproject/index-e.html @@ -4880,7 +4877,7 @@ slots: - uses the prefix GS (but possibly in a different case) examples: - value: https://identifiers.org/gold:Gs0110115 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://gold.jgi.doe.gov/studies is_a: study_identifiers @@ -4892,7 +4889,7 @@ slots: description: identifiers for corresponding project in MGnify examples: - value: https://identifiers.org/mgnify.proj:MGYS00005757 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: study_identifiers mixins: - mgnify_identifiers @@ -4908,7 +4905,7 @@ slots: - this identifier was registered with bioregistry but not identifiers.org examples: - value: gnps.task:4b848c342a4f4abc871bdf8a09a60807 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://microbiomedata.github.io/nmdc-schema/MetabolomicsAnalysisActivity/ is_a: study_identifiers @@ -4924,7 +4921,7 @@ slots: - value: MASSIVE:MSV000090886 description: MASSIVE id for MASSIVE's metabolomics analysis of Gb0305843, resolvable with prefix http://identifiers.org/massive/ - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://massive.ucsd.edu/ProteoSAFe/dataset.jsp?task=83574f41458a4b259621d5c32a4d82f9 is_a: study_identifiers @@ -4935,18 +4932,18 @@ slots: name: emsl_project_dois description: A DOI that resolves to a EMSL Research Campaign page. title: EMSL Project DOI - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: study_identifiers mixins: - emsl_identifiers biosample_identifiers: name: biosample_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: external_database_identifiers abstract: true neon_biosample_identifiers: name: neon_biosample_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: biosample_identifiers mixins: - neon_identifiers @@ -4955,7 +4952,7 @@ slots: description: identifiers for corresponding sample in GOLD examples: - value: https://identifiers.org/gold:Gb0312930 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: biosample_identifiers mixins: - gold_identifiers @@ -4968,7 +4965,7 @@ slots: - value: https://identifiers.org/biosample:SAMD00212331 description: I13_N_5-10 sample from Soil fungal diversity along elevational gradients - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://github.com/bioregistry/bioregistry/issues/108 - https://www.ebi.ac.uk/biosamples/ @@ -4993,7 +4990,7 @@ slots: - value: https://identifiers.org/insdc.sra:DRS166340 description: I13_N_5-10 sample from Soil fungal diversity along elevational gradients - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: biosample_identifiers mixins: - insdc_identifiers @@ -5008,7 +5005,7 @@ slots: - removed "planned" once NEXUS is online - make an emsl identifiers mixin - determine real expansion for emsl prefix - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: biosample_identifiers mixins: - emsl_identifiers @@ -5016,13 +5013,13 @@ slots: name: igsn_biosample_identifiers description: A list of identifiers for the biosample from the IGSN database. title: IGSN Biosample Identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: biosample_identifiers mixins: - igsn_identifiers omics_processing_identifiers: name: omics_processing_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: external_database_identifiers abstract: true gold_sequencing_project_identifiers: @@ -5030,21 +5027,21 @@ slots: description: identifiers for corresponding sequencing project in GOLD examples: - value: https://identifiers.org/gold:Gp0108335 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: omics_processing_identifiers mixins: - gold_identifiers pattern: ^GOLD:Gp[0-9]+$ insdc_experiment_identifiers: name: insdc_experiment_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: external_database_identifiers mixins: - insdc_identifiers pattern: ^insdc.sra:(E|D|S)RX[0-9]{6,}$ analysis_identifiers: name: analysis_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: external_database_identifiers abstract: true gold_analysis_project_identifiers: @@ -5052,7 +5049,7 @@ slots: description: identifiers for corresponding analysis project in GOLD examples: - value: https://identifiers.org/gold:Ga0526289 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: analysis_identifiers mixins: - gold_identifiers @@ -5065,7 +5062,7 @@ slots: - value: https://www.ebi.ac.uk/metagenomics/runs/DRR218479 description: Illumina MiSeq paired end sequencing of SAMD00212331 - value: https://www.ebi.ac.uk/ena/browser/view/ERR436051 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: analysis_identifiers mixins: - insdc_identifiers @@ -5077,17 +5074,17 @@ slots: examples: - value: https://www.ebi.ac.uk/metagenomics/analyses/MGYA00002270 description: combined analyses (taxonomic, functional) of sample ERS438107 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: analysis_identifiers mixins: - mgnify_identifiers assembly_identifiers: name: assembly_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc abstract: true insdc_assembly_identifiers: name: insdc_assembly_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: assembly_identifiers mixins: - insdc_identifiers @@ -5095,34 +5092,34 @@ slots: dissolving_activity_set: name: dissolving_activity_set title: dissolving activity set - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: true range: DissolvingActivity inlined_as_list: true material_sample_set: name: material_sample_set title: material sample set - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: true range: MaterialSample inlined_as_list: true material_sampling_activity_set: name: material_sampling_activity_set title: material sampling activity set - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: true range: MaterialSamplingActivity inlined_as_list: true reaction_activity_set: name: reaction_activity_set - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: true range: ReactionActivity inlined_as_list: true dissolution_aided_by: name: dissolution_aided_by title: dissolution aided by - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - shaker range: LabDevice @@ -5130,14 +5127,14 @@ slots: dissolution_reagent: name: dissolution_reagent title: dissolution reagent - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - solvent range: SolventEnum dissolution_volume: name: dissolution_volume title: dissolution volume - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - volume range: QuantityValue @@ -5145,7 +5142,7 @@ slots: dissolved_in: name: dissolved_in title: dissolved in - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - container range: MaterialContainer @@ -5153,24 +5150,24 @@ slots: material_input: name: material_input title: material input - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: MaterialSample material_output: name: material_output title: material output - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: MaterialSample device_type: name: device_type title: device type - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - shaker type range: DeviceTypeEnum activity_speed: name: activity_speed title: activity speed - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - shake_speed range: QuantityValue @@ -5179,13 +5176,13 @@ slots: name: activity_temperature todos: - constrain units - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: QuantityValue inlined: true activity_time: name: activity_time title: activity time - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - shake_time range: QuantityValue @@ -5193,50 +5190,50 @@ slots: container_size: name: container_size title: container size - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: QuantityValue inlined: true container_type: name: container_type title: container type - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: ContainerTypeEnum amount_collected: name: amount_collected title: amount collected - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: QuantityValue inlined: true collected_into: name: collected_into title: collected into - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc sampling_method: name: sampling_method title: sampling method - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: SamplingMethodEnum reaction_aided_by: name: reaction_aided_by title: reaction aided by - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - shaker range: LabDevice inlined: true reaction_temperature: name: reaction_temperature - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc reaction_time: name: reaction_time - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc analysis_type: name: analysis_type description: Select all the data types associated or available for this biosample title: analysis/data type examples: - value: metagenomics; metabolomics; proteomics - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - MIxS:investigation_type rank: 3 @@ -5257,7 +5254,7 @@ slots: to a new vial and generated a new sample)' examples: - value: IGSN:DSJ0284 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 5 string_serialization: '{text}:{text}' multivalued: true @@ -5277,7 +5274,7 @@ slots: are all acceptable. examples: - value: 2021-04-15, 2021-04 and 2021 are all acceptable. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - MIxS:collection_date rank: 2 @@ -5295,7 +5292,7 @@ slots: - 'Time should be entered as HH:MM(:SS) in GMT. See here for a converter: https://www.worldtimebuddy.com/pst-to-gmt-converter' examples: - value: 13:33 or 13:33:55 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - MIxS:collection_date rank: 1 @@ -5314,7 +5311,7 @@ slots: - 'Time should be entered as HH:MM(:SS) in GMT. See here for a converter: https://www.worldtimebuddy.com/pst-to-gmt-converter' examples: - value: 13:33 or 13:33:55 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - MIxS:collection_date rank: 3 @@ -5333,7 +5330,7 @@ slots: data collection template. examples: - value: 'experimental treatment: value' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - MIxS:experimental_factor|additional_info rank: 7 @@ -5349,7 +5346,7 @@ slots: examples: - value: C18 - value: Basix PES, 13-100-106 FisherSci - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - MIxS:filter_type rank: 6 @@ -5368,7 +5365,7 @@ slots: examples: - value: 13C glucose - value: H218O - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - MIxS:chem_administration rank: 16 @@ -5386,7 +5383,7 @@ slots: examples: - value: https://doi.org/10.1016/0038-0717(87)90052-6 - value: https://doi.org/10.1016/0038-0717(87)90052-6 | https://www.sciencedirect.com/science/article/abs/pii/0038071787900526 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - MIxS:micro_biomass_meth rank: 11 @@ -5402,7 +5399,7 @@ slots: examples: - value: https://doi.org/10.1016/0038-0717(87)90052-6 - value: https://doi.org/10.1016/0038-0717(87)90052-6 | https://www.sciencedirect.com/science/article/abs/pii/0038071787900526 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - MIxS:micro_biomass_meth rank: 13 @@ -5418,7 +5415,7 @@ slots: and method are required examples: - value: 0.05 ug C/g dry soil - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - MIxS:microbial_biomass rank: 10 @@ -5434,7 +5431,7 @@ slots: and method are required examples: - value: 0.05 ug N/g dry soil - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - MIxS:microbial_biomass rank: 12 @@ -5448,7 +5445,7 @@ slots: title: non-microbial biomass examples: - value: insect 0.23 ug; plant 1g - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - MIxS:biomass|microbial_biomass rank: 8 @@ -5462,7 +5459,7 @@ slots: - required if "non-microbial biomass" is provided examples: - value: https://doi.org/10.1038/s41467-021-26181-3 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - MIxS:microbial_biomass rank: 9 @@ -5476,7 +5473,7 @@ slots: - required if "org_nitro" is provided examples: - value: https://doi.org/10.1016/0038-0717(85)90144-0 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - MIxS:org_nitro|tot_nitro_cont_meth rank: 14 @@ -5490,7 +5487,7 @@ slots: comments: - This is an open text field to provide any treatments that cannot be captured in the provided slots. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - MIxS:additional_info rank: 15 @@ -5509,7 +5506,7 @@ slots: are all acceptable. examples: - value: 2021-04-15, 2021-04 and 2021 are all acceptable. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - MIxS:collection_date rank: 4 @@ -5527,7 +5524,7 @@ slots: - 'Time should be entered as HH:MM(:SS) in GMT. See here for a converter: https://www.worldtimebuddy.com/pst-to-gmt-converter' examples: - value: 13:33 or 13:33:55 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - MIxS:collection_date rank: 5 @@ -5541,7 +5538,7 @@ slots: - Note DNase treatment is required for all RNA samples. examples: - value: 'no' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 13 slot_group: JGI-Metatranscriptomics range: YesNoEnum @@ -5554,7 +5551,7 @@ slots: values have been pre-filled. examples: - value: '504000' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 19 string_serialization: '{text}' slot_group: JGI-Metatranscriptomics @@ -5567,7 +5564,7 @@ slots: - Recommended value is between 1 and 3. examples: - value: '2.02' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 7 is_a: biomaterial_purity string_serialization: '{float}' @@ -5582,7 +5579,7 @@ slots: - Recommended value is between 1 and 3. examples: - value: '2.02' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 8 is_a: biomaterial_purity string_serialization: '{float}' @@ -5595,7 +5592,7 @@ slots: title: RNA collection site examples: - value: untreated pond water - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 15 string_serialization: '{text}' slot_group: JGI-Metatranscriptomics @@ -5608,7 +5605,7 @@ slots: a fluorometric method. Acceptable values are 0-2000. examples: - value: '100' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - nmdc:nucleic_acid_concentration rank: 5 @@ -5624,7 +5621,7 @@ slots: title: RNA container type examples: - value: plate - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 10 slot_group: JGI-Metatranscriptomics range: JgiContTypeEnum @@ -5640,7 +5637,7 @@ slots: - For partial plates, fill by columns, like B1-G1,A2-H2,A3-D3 (NOT A2-A11,B1-B8). examples: - value: B2 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 11 string_serialization: '{96 well plate pos}' slot_group: JGI-Metatranscriptomics @@ -5654,7 +5651,7 @@ slots: in a plate should have the same plate label. examples: - value: Pond_MT_041618 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 9 string_serialization: '{text < 20 characters}' slot_group: JGI-Metatranscriptomics @@ -5665,7 +5662,7 @@ slots: title: RNA isolation method examples: - value: phenol/chloroform extraction - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 16 string_serialization: '{text}' slot_group: JGI-Metatranscriptomics @@ -5678,7 +5675,7 @@ slots: examples: - value: expected to contain microbes (59%) fungi (30%), viruses (10%), tadpoles (1%) - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 14 string_serialization: '{text}' slot_group: JGI-Metatranscriptomics @@ -5691,7 +5688,7 @@ slots: values have been pre-filled. examples: - value: John Jones - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 18 string_serialization: '{text}' slot_group: JGI-Metatranscriptomics @@ -5704,7 +5701,7 @@ slots: values have been pre-filled. examples: - value: '187654' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 3 string_serialization: '{text}' slot_group: JGI-Metatranscriptomics @@ -5715,7 +5712,7 @@ slots: title: RNA sample format examples: - value: Water - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 12 slot_group: JGI-Metatranscriptomics range: rna_sample_format_enum @@ -5727,7 +5724,7 @@ slots: title: RNA sample name examples: - value: JGI_pond_041618 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 4 string_serialization: '{text}' slot_group: JGI-Metatranscriptomics @@ -5742,7 +5739,7 @@ slots: values have been pre-filled. examples: - value: '1191234' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 1 string_serialization: '{text}' slot_group: JGI-Metatranscriptomics @@ -5755,7 +5752,7 @@ slots: values have been pre-filled. examples: - value: Jane Johnson - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 17 string_serialization: '{text}' slot_group: JGI-Metatranscriptomics @@ -5768,7 +5765,7 @@ slots: values have been pre-filled. examples: - value: JGI Pond metatranscriptomics - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 2 string_serialization: '{text}' slot_group: JGI-Metatranscriptomics @@ -5782,7 +5779,7 @@ slots: has been granted by a project manager examples: - value: '25' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 6 string_serialization: '{float}' slot_group: JGI-Metatranscriptomics @@ -5798,7 +5795,7 @@ slots: - Recommended value is between 1 and 3. examples: - value: '2.02' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 7 is_a: biomaterial_purity string_serialization: '{float}' @@ -5813,7 +5810,7 @@ slots: - Recommended value is between 1 and 3. examples: - value: '2.02' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 8 is_a: biomaterial_purity string_serialization: '{float}' @@ -5826,7 +5823,7 @@ slots: title: DNA collection site examples: - value: untreated pond water - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 15 string_serialization: '{text}' slot_group: JGI-Metagenomics @@ -5839,7 +5836,7 @@ slots: a fluorometric method. Acceptable values are 0-2000. examples: - value: '100' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - nmdc:nucleic_acid_concentration rank: 5 @@ -5855,7 +5852,7 @@ slots: title: DNA container type examples: - value: plate - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 10 slot_group: JGI-Metagenomics range: JgiContTypeEnum @@ -5871,7 +5868,7 @@ slots: - For partial plates, fill by columns, like B1-G1,A2-H2,A3-D3 (NOT A2-A11,B1-B8). examples: - value: B2 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 11 string_serialization: '{96 well plate pos}' slot_group: JGI-Metagenomics @@ -5885,7 +5882,7 @@ slots: in a plate should have the same plate label. examples: - value: Pond_MT_041618 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 9 string_serialization: '{text < 20 characters}' slot_group: JGI-Metagenomics @@ -5897,7 +5894,7 @@ slots: - Note DNase treatment is required for all RNA samples. examples: - value: 'no' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 13 slot_group: JGI-Metagenomics range: YesNoEnum @@ -5908,7 +5905,7 @@ slots: title: DNA isolation method examples: - value: phenol/chloroform extraction - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 16 string_serialization: '{text}' slot_group: JGI-Metagenomics @@ -5921,7 +5918,7 @@ slots: examples: - value: expected to contain microbes (59%) fungi (30%), viruses (10%), tadpoles (1%) - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 14 string_serialization: '{text}' slot_group: JGI-Metagenomics @@ -5934,7 +5931,7 @@ slots: values have been pre-filled. examples: - value: John Jones - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 18 string_serialization: '{text}' slot_group: JGI-Metagenomics @@ -5951,7 +5948,7 @@ slots: values have been pre-filled. examples: - value: '187654' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 3 string_serialization: '{text}' slot_group: JGI-Metagenomics @@ -5962,7 +5959,7 @@ slots: title: DNA sample format examples: - value: Water - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 12 slot_group: JGI-Metagenomics range: dna_sample_format_enum @@ -5974,7 +5971,7 @@ slots: title: DNA sample name examples: - value: JGI_pond_041618 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 4 string_serialization: '{text}' slot_group: JGI-Metagenomics @@ -5987,7 +5984,7 @@ slots: values have been pre-filled. examples: - value: '1191234' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 1 string_serialization: '{text}' slot_group: JGI-Metagenomics @@ -6000,7 +5997,7 @@ slots: values have been pre-filled. examples: - value: Jane Johnson - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 17 string_serialization: '{text}' slot_group: JGI-Metagenomics @@ -6013,7 +6010,7 @@ slots: values have been pre-filled. examples: - value: JGI Pond metagenomics - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 2 string_serialization: '{text}' slot_group: JGI-Metagenomics @@ -6027,7 +6024,7 @@ slots: has been granted by a project manager examples: - value: '25' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 6 string_serialization: '{float}' slot_group: JGI-Metagenomics @@ -6043,7 +6040,7 @@ slots: values have been pre-filled. examples: - value: '504000' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 19 string_serialization: '{text}' slot_group: JGI-Metagenomics @@ -6059,7 +6056,7 @@ slots: - Enter a temperature in celsius. Numeric portion only. examples: - value: '-80' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 4 string_serialization: '{float}' slot_group: EMSL @@ -6068,7 +6065,7 @@ slots: name: project_id description: Proposal IDs or names associated with dataset title: project ID - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 1 string_serialization: '{text}' slot_group: EMSL @@ -6079,7 +6076,7 @@ slots: title: replicate number comments: - This will guide staff in ensuring your samples are blocked & randomized correctly - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 6 string_serialization: '{integer}' slot_group: EMSL @@ -6096,7 +6093,7 @@ slots: - value: 15 g - value: 100 uL - value: 5 mL - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 3 string_serialization: '{float} {unit}' slot_group: EMSL @@ -6109,7 +6106,7 @@ slots: - This can vary from 'environmental package' if the sample is an extraction. examples: - value: water extracted soil - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 2 slot_group: EMSL range: sample_type_enum @@ -6124,7 +6121,7 @@ slots: to EMSL for analyses. examples: - value: '2' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 5 string_serialization: '{integer}' slot_group: EMSL @@ -6146,7 +6143,7 @@ slots: title: absolute air humidity examples: - value: 9 gram per gram - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - absolute air humidity is_a: core field @@ -6169,7 +6166,7 @@ slots: title: secondary and tertiary recovery methods and start date examples: - value: Polymer Addition;2018-06-21T14:30Z - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - secondary and tertiary recovery methods and start date is_a: core field @@ -6190,7 +6187,7 @@ slots: title: additional info examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - additional info is_a: core field @@ -6211,7 +6208,7 @@ slots: title: address examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - address is_a: core field @@ -6233,7 +6230,7 @@ slots: title: adjacent rooms examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - adjacent rooms is_a: core field @@ -6256,7 +6253,7 @@ slots: title: aerospace structure examples: - value: plane - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - aerospace structure is_a: core field @@ -6280,7 +6277,7 @@ slots: title: history/agrochemical additions examples: - value: roundup;5 milligram per liter;2018-06-21 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - history/agrochemical additions is_a: core field @@ -6306,7 +6303,7 @@ slots: title: air particulate matter concentration examples: - value: PM2.5;10 microgram per cubic meter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - air particulate matter concentration is_a: core field @@ -6330,7 +6327,7 @@ slots: title: air temperature examples: - value: 20 degree Celsius - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - air temperature is_a: core field @@ -6356,7 +6353,7 @@ slots: title: air temperature regimen examples: - value: 25 degree Celsius;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - air temperature regimen is_a: core field @@ -6380,7 +6377,7 @@ slots: title: extreme_unusual_properties/Al saturation examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - extreme_unusual_properties/Al saturation is_a: core field @@ -6400,7 +6397,7 @@ slots: title: extreme_unusual_properties/Al saturation method examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - extreme_unusual_properties/Al saturation method is_a: core field @@ -6425,7 +6422,7 @@ slots: title: alkalinity examples: - value: 50 milligram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - alkalinity is_a: core field @@ -6445,7 +6442,7 @@ slots: title: alkalinity method examples: - value: titration - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - alkalinity method is_a: core field @@ -6469,7 +6466,7 @@ slots: title: alkyl diethers examples: - value: 0.005 mole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - alkyl diethers is_a: core field @@ -6491,7 +6488,7 @@ slots: title: altitude examples: - value: 100 meter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - altitude is_a: environment field @@ -6514,7 +6511,7 @@ slots: title: aminopeptidase activity examples: - value: 0.269 mole per liter per hour - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - aminopeptidase activity is_a: core field @@ -6537,7 +6534,7 @@ slots: title: ammonium examples: - value: 1.5 milligram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - ammonium is_a: core field @@ -6561,7 +6558,7 @@ slots: title: amount of light examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - amount of light is_a: core field @@ -6583,7 +6580,7 @@ slots: title: ancestral data examples: - value: A/3*B - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - ancestral data is_a: core field @@ -6608,7 +6605,7 @@ slots: title: mean annual precipitation examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - mean annual precipitation is_a: core field @@ -6631,7 +6628,7 @@ slots: title: mean annual temperature examples: - value: 12.5 degree Celsius - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - mean annual temperature is_a: core field @@ -6658,7 +6655,7 @@ slots: title: antibiotic regimen examples: - value: penicillin;5 milligram;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - antibiotic regimen is_a: core field @@ -6684,7 +6681,7 @@ slots: title: API gravity examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - API gravity is_a: core field @@ -6705,7 +6702,7 @@ slots: title: architectural structure examples: - value: shed - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - architectural structure is_a: core field @@ -6732,7 +6729,7 @@ slots: title: aromatics wt% examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - aromatics wt% is_a: core field @@ -6760,7 +6757,7 @@ slots: title: asphaltenes wt% examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - asphaltenes wt% is_a: core field @@ -6781,7 +6778,7 @@ slots: title: atmospheric data examples: - value: wind speed;9 knots - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - atmospheric data is_a: core field @@ -6806,7 +6803,7 @@ slots: title: average dew point examples: - value: 25.5 degree Celsius - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - average dew point is_a: core field @@ -6827,7 +6824,7 @@ slots: title: average daily occupancy examples: - value: '2' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - average daily occupancy is_a: core field @@ -6851,7 +6848,7 @@ slots: title: average temperature examples: - value: 12.5 degree Celsius - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - average temperature is_a: core field @@ -6874,7 +6871,7 @@ slots: title: bacterial production examples: - value: 5 milligram per cubic meter per day - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - bacterial production is_a: core field @@ -6897,7 +6894,7 @@ slots: title: bacterial respiration examples: - value: 300 micromole oxygen per liter per hour - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - bacterial respiration is_a: core field @@ -6920,7 +6917,7 @@ slots: title: bacterial carbon production examples: - value: 2.53 microgram per liter per hour - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - bacterial carbon production is_a: core field @@ -6944,7 +6941,7 @@ slots: title: barometric pressure examples: - value: 5 millibar - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - barometric pressure is_a: core field @@ -6964,7 +6961,7 @@ slots: title: basin name examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - basin name is_a: core field @@ -6985,7 +6982,7 @@ slots: title: bathroom count examples: - value: '1' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - bathroom count is_a: core field @@ -7005,7 +7002,7 @@ slots: title: bedroom count examples: - value: '2' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - bedroom count is_a: core field @@ -7028,7 +7025,7 @@ slots: title: benzene examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - benzene is_a: core field @@ -7053,7 +7050,7 @@ slots: title: biochemical oxygen demand examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - biochemical oxygen demand is_a: core field @@ -7074,7 +7071,7 @@ slots: title: biocide administration examples: - value: ALPHA 1427;Baker Hughes;2008-01-23 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - biocide administration is_a: core field @@ -7100,7 +7097,7 @@ slots: title: biocide administration method examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - biocide administration method is_a: core field @@ -7121,7 +7118,7 @@ slots: title: biological status examples: - value: natural - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - biological status is_a: core field @@ -7145,7 +7142,7 @@ slots: title: biomass examples: - value: total;20 gram - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - biomass is_a: core field @@ -7167,7 +7164,7 @@ slots: title: biotic regimen examples: - value: sample inoculated with Rhizobium spp. Culture - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - biotic regimen is_a: core field @@ -7188,7 +7185,7 @@ slots: title: observed biotic relationship examples: - value: free living - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - observed biotic relationship is_a: nucleic acid sequence source field @@ -7211,7 +7208,7 @@ slots: title: bishomohopanol examples: - value: 14 microgram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - bishomohopanol is_a: core field @@ -7234,7 +7231,7 @@ slots: title: host blood pressure diastolic examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host blood pressure diastolic is_a: core field @@ -7257,7 +7254,7 @@ slots: title: host blood pressure systolic examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host blood pressure systolic is_a: core field @@ -7280,7 +7277,7 @@ slots: title: bromide examples: - value: 0.05 parts per million - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - bromide is_a: core field @@ -7300,7 +7297,7 @@ slots: title: design, construction, and operation documents examples: - value: maintenance plans - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - design, construction, and operation documents is_a: core field @@ -7321,7 +7318,7 @@ slots: title: building occupancy type examples: - value: market - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - building occupancy type is_a: core field @@ -7341,7 +7338,7 @@ slots: title: building setting examples: - value: rural - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - building setting is_a: core field @@ -7364,7 +7361,7 @@ slots: title: built structure age examples: - value: '15' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - built structure age is_a: core field @@ -7385,7 +7382,7 @@ slots: title: built structure setting examples: - value: rural - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - built structure setting is_a: core field @@ -7407,7 +7404,7 @@ slots: title: built structure type examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - built structure type is_a: core field @@ -7431,7 +7428,7 @@ slots: title: calcium examples: - value: 0.2 micromole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - calcium is_a: core field @@ -7454,7 +7451,7 @@ slots: title: carbon dioxide examples: - value: 410 parts per million - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - carbon dioxide is_a: core field @@ -7477,7 +7474,7 @@ slots: title: carbon monoxide examples: - value: 0.1 parts per million - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - carbon monoxide is_a: core field @@ -7497,7 +7494,7 @@ slots: title: carbon/nitrogen ratio examples: - value: '0.417361111' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - carbon/nitrogen ratio is_a: core field @@ -7520,7 +7517,7 @@ slots: title: ceiling area examples: - value: 25 square meter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - ceiling area is_a: core field @@ -7541,7 +7538,7 @@ slots: title: ceiling condition examples: - value: damaged - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - ceiling condition is_a: core field @@ -7561,7 +7558,7 @@ slots: title: ceiling finish material examples: - value: stucco - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - ceiling finish material is_a: core field @@ -7581,7 +7578,7 @@ slots: title: ceiling structure examples: - value: concrete - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - ceiling structure is_a: core field @@ -7602,7 +7599,7 @@ slots: title: ceiling texture examples: - value: popcorn - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - ceiling texture is_a: core field @@ -7628,7 +7625,7 @@ slots: title: ceiling thermal mass examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - ceiling thermal mass is_a: core field @@ -7648,7 +7645,7 @@ slots: title: ceiling type examples: - value: coffered - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - ceiling type is_a: core field @@ -7668,7 +7665,7 @@ slots: title: ceiling signs of water/mold examples: - value: presence of mold visible - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - ceiling signs of water/mold is_a: core field @@ -7692,7 +7689,7 @@ slots: title: chemical administration examples: - value: agar [CHEBI:2509];2018-05-11T20:00Z - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - chemical administration is_a: core field @@ -7719,7 +7716,7 @@ slots: title: chemical mutagen examples: - value: nitrous acid;0.5 milligram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - chemical mutagen is_a: core field @@ -7745,7 +7742,7 @@ slots: title: chemical oxygen demand examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - chemical oxygen demand is_a: core field @@ -7770,7 +7767,7 @@ slots: title: chemical treatment method examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - chemical treatment method is_a: core field @@ -7795,7 +7792,7 @@ slots: title: chemical treatment examples: - value: ACCENT 1125;DOW;2010-11-17 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - chemical treatment is_a: core field @@ -7815,7 +7812,7 @@ slots: title: chimera check software examples: - value: uchime;v4.1;default parameters - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - chimera check software is_a: sequencing field @@ -7839,7 +7836,7 @@ slots: title: chloride examples: - value: 5000 milligram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - chloride is_a: core field @@ -7862,7 +7859,7 @@ slots: title: chlorophyll examples: - value: 5 milligram per cubic meter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - chlorophyll is_a: core field @@ -7885,7 +7882,7 @@ slots: title: climate environment examples: - value: tropical climate;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - climate environment is_a: core field @@ -7906,7 +7903,7 @@ slots: title: collection date examples: - value: 2018-05-11T10:00:00+01:00; 2018-05-11 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - collection date is_a: environment field @@ -7929,7 +7926,7 @@ slots: title: conductivity examples: - value: 10 milliSiemens per centimeter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - conductivity is_a: core field @@ -7949,7 +7946,7 @@ slots: title: cooling system identifier examples: - value: '12345' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - cooling system identifier is_a: core field @@ -7969,7 +7966,7 @@ slots: title: history/crop rotation examples: - value: yes;R2/2017-01-01/2018-12-31/P6M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - history/crop rotation is_a: core field @@ -7993,7 +7990,7 @@ slots: title: culture rooting medium examples: - value: http://himedialabs.com/TD/PT158.pdf - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - culture rooting medium is_a: core field @@ -8014,7 +8011,7 @@ slots: title: current land use examples: - value: conifers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - current land use is_a: core field @@ -8035,7 +8032,7 @@ slots: title: current vegetation examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - current vegetation is_a: core field @@ -8056,7 +8053,7 @@ slots: title: current vegetation method examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - current vegetation method is_a: core field @@ -8077,7 +8074,7 @@ slots: title: date last rain examples: - value: 2018-05-11:T14:30Z - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - date last rain is_a: core field @@ -8101,7 +8098,7 @@ slots: title: density examples: - value: 1000 kilogram per cubic meter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - density is_a: core field @@ -8122,7 +8119,7 @@ slots: title: depositional environment examples: - value: Continental - Alluvial - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - depositional environment is_a: core field @@ -8141,7 +8138,7 @@ slots: title: depth examples: - value: 10 meter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - depth is_a: environment field @@ -8165,7 +8162,7 @@ slots: title: dew point examples: - value: 22 degree Celsius - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - dew point is_a: core field @@ -8189,7 +8186,7 @@ slots: title: diether lipids examples: - value: 0.2 nanogram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - diether lipids is_a: core field @@ -8214,7 +8211,7 @@ slots: title: dissolved carbon dioxide examples: - value: 5 milligram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - dissolved carbon dioxide is_a: core field @@ -8237,7 +8234,7 @@ slots: title: dissolved hydrogen examples: - value: 0.3 micromole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - dissolved hydrogen is_a: core field @@ -8261,7 +8258,7 @@ slots: title: dissolved inorganic carbon examples: - value: 2059 micromole per kilogram - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - dissolved inorganic carbon is_a: core field @@ -8284,7 +8281,7 @@ slots: title: dissolved inorganic nitrogen examples: - value: 761 micromole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - dissolved inorganic nitrogen is_a: core field @@ -8307,7 +8304,7 @@ slots: title: dissolved inorganic phosphorus examples: - value: 56.5 micromole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - dissolved inorganic phosphorus is_a: core field @@ -8330,7 +8327,7 @@ slots: title: dissolved iron examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - dissolved iron is_a: core field @@ -8354,7 +8351,7 @@ slots: title: dissolved organic carbon examples: - value: 197 micromole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - dissolved organic carbon is_a: core field @@ -8378,7 +8375,7 @@ slots: title: dissolved organic nitrogen examples: - value: 0.05 micromole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - dissolved organic nitrogen is_a: core field @@ -8401,7 +8398,7 @@ slots: title: dissolved oxygen examples: - value: 175 micromole per kilogram - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - dissolved oxygen is_a: core field @@ -8425,7 +8422,7 @@ slots: title: dissolved oxygen in fluids examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - dissolved oxygen in fluids is_a: core field @@ -8445,7 +8442,7 @@ slots: title: door type, composite examples: - value: revolving - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - door type, composite is_a: core field @@ -8465,7 +8462,7 @@ slots: title: door condition examples: - value: new - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - door condition is_a: core field @@ -8485,7 +8482,7 @@ slots: title: door direction of opening examples: - value: inward - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - door direction of opening is_a: core field @@ -8505,7 +8502,7 @@ slots: title: door location examples: - value: north - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - door location is_a: core field @@ -8525,7 +8522,7 @@ slots: title: door material examples: - value: wood - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - door material is_a: core field @@ -8545,7 +8542,7 @@ slots: title: door movement examples: - value: swinging - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - door movement is_a: core field @@ -8568,7 +8565,7 @@ slots: title: door area or size examples: - value: 2.5 square meter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - door area or size is_a: core field @@ -8588,7 +8585,7 @@ slots: title: door type examples: - value: wooden - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - door type is_a: core field @@ -8608,7 +8605,7 @@ slots: title: door type, metal examples: - value: hollow - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - door type, metal is_a: core field @@ -8628,7 +8625,7 @@ slots: title: door type, wood examples: - value: battened - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - door type, wood is_a: core field @@ -8648,7 +8645,7 @@ slots: title: door signs of water/mold examples: - value: presence of mold visible - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - door signs of water/mold is_a: core field @@ -8674,7 +8671,7 @@ slots: title: downward PAR examples: - value: 28.71 microEinstein per square meter per second - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - downward PAR is_a: core field @@ -8694,7 +8691,7 @@ slots: title: drainage classification examples: - value: well - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - drainage classification is_a: core field @@ -8715,7 +8712,7 @@ slots: title: drawings examples: - value: sketch - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - drawings is_a: core field @@ -8738,7 +8735,7 @@ slots: title: efficiency percent examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - efficiency percent is_a: core field @@ -8758,7 +8755,7 @@ slots: title: elevation examples: - value: 100 meter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - elevation is_a: environment field @@ -8778,7 +8775,7 @@ slots: title: elevator count examples: - value: '2' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - elevator count is_a: core field @@ -8803,7 +8800,7 @@ slots: title: emulsions examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - emulsions is_a: core field @@ -8828,7 +8825,7 @@ slots: examples: - value: oceanic epipelagic zone biome [ENVO:01000033] for annotating a water sample from the photic zone in middle of the Atlantic Ocean - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - broad-scale environmental context is_a: environment field @@ -8855,7 +8852,7 @@ slots: various vegetation layers in a forest consider: canopy [ENVO:00000047]|herb and fern layer [ENVO:01000337]|litter layer [ENVO:01000338]|understory [01000335]|shrub layer [ENVO:01000336].' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - local environmental context is_a: environment field @@ -8882,7 +8879,7 @@ slots: - value: 'soil [ENVO:00001998]; Annotating a fish swimming in the upper 100 m of the Atlantic Ocean, consider: ocean water [ENVO:00002151]. Example: Annotating a duck on a pond consider: pond water [ENVO:00002228]|air [ENVO_00002005]' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - environmental medium is_a: environment field @@ -8903,7 +8900,7 @@ slots: title: escalator count examples: - value: '4' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - escalator count is_a: core field @@ -8926,7 +8923,7 @@ slots: title: ethylbenzene examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - ethylbenzene is_a: core field @@ -8949,7 +8946,7 @@ slots: title: exposed ductwork examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - exposed ductwork is_a: core field @@ -8969,7 +8966,7 @@ slots: title: exposed pipes examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - exposed pipes is_a: core field @@ -8991,7 +8988,7 @@ slots: title: experimental factor examples: - value: time series design [EFO:EFO_0001779] - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - experimental factor is_a: investigation field @@ -9012,7 +9009,7 @@ slots: title: exterior door count examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - exterior door count is_a: core field @@ -9032,7 +9029,7 @@ slots: title: orientations of exterior wall examples: - value: northwest - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - orientations of exterior wall is_a: core field @@ -9052,7 +9049,7 @@ slots: title: orientations of exterior window examples: - value: southwest - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - orientations of exterior window is_a: core field @@ -9072,7 +9069,7 @@ slots: title: history/extreme events examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - history/extreme events is_a: core field @@ -9093,7 +9090,7 @@ slots: title: soil_taxonomic/FAO classification examples: - value: Luvisols - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - soil_taxonomic/FAO classification is_a: core field @@ -9120,7 +9117,7 @@ slots: title: fertilizer regimen examples: - value: urea;0.6 milligram per liter;R2/2018-05-11:T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - fertilizer regimen is_a: core field @@ -9141,7 +9138,7 @@ slots: title: field name examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - field name is_a: core field @@ -9162,7 +9159,7 @@ slots: title: filter type examples: - value: HEPA - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - filter type is_a: core field @@ -9182,7 +9179,7 @@ slots: title: history/fire examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - history/fire is_a: core field @@ -9202,7 +9199,7 @@ slots: title: fireplace type examples: - value: wood burning - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - fireplace type is_a: core field @@ -9223,7 +9220,7 @@ slots: title: history/flooding examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - history/flooding is_a: core field @@ -9246,7 +9243,7 @@ slots: title: floor age examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - floor age is_a: core field @@ -9269,7 +9266,7 @@ slots: title: floor area examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - floor area is_a: core field @@ -9290,7 +9287,7 @@ slots: title: floor condition examples: - value: new - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - floor condition is_a: core field @@ -9311,7 +9308,7 @@ slots: title: floor count examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - floor count is_a: core field @@ -9331,7 +9328,7 @@ slots: title: floor finish material examples: - value: carpet - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - floor finish material is_a: core field @@ -9352,7 +9349,7 @@ slots: title: floor structure examples: - value: concrete - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - floor structure is_a: core field @@ -9375,7 +9372,7 @@ slots: title: floor thermal mass examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - floor thermal mass is_a: core field @@ -9395,7 +9392,7 @@ slots: title: floor signs of water/mold examples: - value: ceiling discoloration - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - floor signs of water/mold is_a: core field @@ -9418,7 +9415,7 @@ slots: title: fluorescence examples: - value: 2.5 volts - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - fluorescence is_a: core field @@ -9439,7 +9436,7 @@ slots: title: frequency of cleaning examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - frequency of cleaning is_a: core field @@ -9459,7 +9456,7 @@ slots: title: frequency of cooking examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - frequency of cooking is_a: core field @@ -9485,7 +9482,7 @@ slots: title: fungicide regimen examples: - value: bifonazole;1 mole per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - fungicide regimen is_a: core field @@ -9506,7 +9503,7 @@ slots: title: furniture examples: - value: chair - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - furniture is_a: core field @@ -9532,7 +9529,7 @@ slots: title: gaseous environment examples: - value: nitric oxide;0.5 micromole per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - gaseous environment is_a: core field @@ -9557,7 +9554,7 @@ slots: title: gaseous substances examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - gaseous substances is_a: core field @@ -9578,7 +9575,7 @@ slots: title: gender of restroom examples: - value: male - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - gender of restroom is_a: core field @@ -9601,7 +9598,7 @@ slots: title: genetic modification examples: - value: aox1A transgenic - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - genetic modification is_a: core field @@ -9623,7 +9620,7 @@ slots: title: geographic location (country and/or sea,region) examples: - value: 'USA: Maryland, Bethesda' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - geographic location (country and/or sea,region) is_a: environment field @@ -9647,7 +9644,7 @@ slots: title: glucosidase activity examples: - value: 5 mol per liter per hour - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - glucosidase activity is_a: core field @@ -9668,7 +9665,7 @@ slots: title: gravidity examples: - value: yes;due date:2018-05-11 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - gravidity is_a: core field @@ -9696,7 +9693,7 @@ slots: title: gravity examples: - value: 12 g;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - gravity is_a: core field @@ -9719,7 +9716,7 @@ slots: title: growth facility examples: - value: Growth chamber [CO_715:0000189] - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - growth facility is_a: core field @@ -9740,7 +9737,7 @@ slots: title: growth habit examples: - value: spreading - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - growth habit is_a: core field @@ -9767,7 +9764,7 @@ slots: title: growth hormone regimen examples: - value: abscisic acid;0.5 milligram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - growth hormone regimen is_a: core field @@ -9788,7 +9785,7 @@ slots: title: hallway/corridor count examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - hallway/corridor count is_a: core field @@ -9808,7 +9805,7 @@ slots: title: handidness examples: - value: right handedness - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - handidness is_a: core field @@ -9829,7 +9826,7 @@ slots: title: hydrocarbon type produced examples: - value: Gas - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - hydrocarbon type produced is_a: core field @@ -9855,7 +9852,7 @@ slots: title: hydrocarbon resource type examples: - value: Oil Sand - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - hydrocarbon resource type is_a: core field @@ -9879,7 +9876,7 @@ slots: title: formation water salinity examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - formation water salinity is_a: core field @@ -9900,7 +9897,7 @@ slots: title: hydrocarbon resource geological age examples: - value: Silurian - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - hydrocarbon resource geological age is_a: core field @@ -9923,7 +9920,7 @@ slots: title: hydrocarbon resource original pressure examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - hydrocarbon resource original pressure is_a: core field @@ -9947,7 +9944,7 @@ slots: title: hydrocarbon resource original temperature examples: - value: 150-295 degree Celsius - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - hydrocarbon resource original temperature is_a: core field @@ -9968,7 +9965,7 @@ slots: title: heating and cooling system type examples: - value: heat pump - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - heating and cooling system type is_a: core field @@ -9988,7 +9985,7 @@ slots: title: heating delivery locations examples: - value: north - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - heating delivery locations is_a: core field @@ -10008,7 +10005,7 @@ slots: title: heating system delivery method examples: - value: radiant - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - heating system delivery method is_a: core field @@ -10029,7 +10026,7 @@ slots: title: heating system identifier examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - heating system identifier is_a: core field @@ -10053,7 +10050,7 @@ slots: title: extreme_unusual_properties/heavy metals examples: - value: mercury;0.09 micrograms per gram - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - extreme_unusual_properties/heavy metals is_a: core field @@ -10074,7 +10071,7 @@ slots: title: extreme_unusual_properties/heavy metals method examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - extreme_unusual_properties/heavy metals method is_a: core field @@ -10098,7 +10095,7 @@ slots: title: height carpet fiber mat examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - height carpet fiber mat is_a: core field @@ -10125,7 +10122,7 @@ slots: title: herbicide regimen examples: - value: atrazine;10 milligram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - herbicide regimen is_a: core field @@ -10146,7 +10143,7 @@ slots: title: soil horizon method examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - soil horizon method is_a: core field @@ -10171,7 +10168,7 @@ slots: title: host age examples: - value: 10 days - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host age is_a: core field @@ -10191,7 +10188,7 @@ slots: title: host body habitat examples: - value: nasopharynx - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host body habitat is_a: core field @@ -10215,7 +10212,7 @@ slots: title: host body product examples: - value: Portion of mucus [fma66938] - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host body product is_a: core field @@ -10239,7 +10236,7 @@ slots: title: host body site examples: - value: gill [UBERON:0002535] - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host body site is_a: core field @@ -10263,7 +10260,7 @@ slots: title: host body temperature examples: - value: 15 degree Celsius - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host body temperature is_a: core field @@ -10283,7 +10280,7 @@ slots: title: host color examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host color is_a: core field @@ -10304,7 +10301,7 @@ slots: title: host common name examples: - value: human - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host common name is_a: core field @@ -10326,7 +10323,7 @@ slots: title: host diet examples: - value: herbivore - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host diet is_a: core field @@ -10350,7 +10347,7 @@ slots: title: host dry mass examples: - value: 500 gram - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host dry mass is_a: core field @@ -10371,7 +10368,7 @@ slots: title: host family relationship examples: - value: offspring;Mussel25 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host family relationship is_a: core field @@ -10392,7 +10389,7 @@ slots: title: host genotype examples: - value: C57BL/6 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host genotype is_a: core field @@ -10413,7 +10410,7 @@ slots: title: host growth conditions examples: - value: https://academic.oup.com/icesjms/article/68/2/349/617247 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host growth conditions is_a: core field @@ -10437,7 +10434,7 @@ slots: title: host height examples: - value: 0.1 meter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host height is_a: core field @@ -10458,7 +10455,7 @@ slots: title: host last meal examples: - value: corn feed;P2H - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host last meal is_a: core field @@ -10482,7 +10479,7 @@ slots: title: host length examples: - value: 1 meter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host length is_a: core field @@ -10502,7 +10499,7 @@ slots: title: host life stage examples: - value: adult - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host life stage is_a: core field @@ -10525,7 +10522,7 @@ slots: title: host phenotype examples: - value: elongated [PATO:0001154] - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host phenotype is_a: core field @@ -10546,7 +10543,7 @@ slots: title: host sex examples: - value: non-binary - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host sex is_a: core field @@ -10566,7 +10563,7 @@ slots: title: host shape examples: - value: round - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host shape is_a: core field @@ -10587,7 +10584,7 @@ slots: title: host subject id examples: - value: MPI123 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host subject id is_a: core field @@ -10613,7 +10610,7 @@ slots: title: host subspecific genetic lineage examples: - value: 'serovar:Newport, variety:glabrum, cultivar: Red Delicious' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host subspecific genetic lineage is_a: core field @@ -10634,7 +10631,7 @@ slots: title: host substrate examples: - value: rock - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host substrate is_a: core field @@ -10656,7 +10653,7 @@ slots: title: observed host symbionts examples: - value: flukeworms - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - observed host symbionts is_a: core field @@ -10677,7 +10674,7 @@ slots: title: host taxid comments: - Homo sapiens [NCBITaxon:9606] would be a reasonable has_raw_value - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host taxid is_a: core field @@ -10700,7 +10697,7 @@ slots: title: host total mass examples: - value: 2500 gram - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host total mass is_a: core field @@ -10723,7 +10720,7 @@ slots: title: host wet mass examples: - value: 1500 gram - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host wet mass is_a: core field @@ -10746,7 +10743,7 @@ slots: title: humidity examples: - value: 25 gram per cubic meter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - humidity is_a: core field @@ -10773,7 +10770,7 @@ slots: title: humidity regimen examples: - value: 25 gram per cubic meter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - humidity regimen is_a: core field @@ -10795,7 +10792,7 @@ slots: title: indoor space examples: - value: foyer - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - indoor space is_a: core field @@ -10815,7 +10812,7 @@ slots: title: indoor surface examples: - value: wall - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - indoor surface is_a: core field @@ -10839,7 +10836,7 @@ slots: title: industrial effluent percent examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - industrial effluent percent is_a: core field @@ -10863,7 +10860,7 @@ slots: title: inorganic particles examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - inorganic particles is_a: core field @@ -10887,7 +10884,7 @@ slots: title: inside lux light examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - inside lux light is_a: core field @@ -10908,7 +10905,7 @@ slots: title: interior wall condition examples: - value: damaged - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - interior wall condition is_a: core field @@ -10929,7 +10926,7 @@ slots: title: injection water breakthrough date of specific well examples: - value: '2018-05-11' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - injection water breakthrough date of specific well is_a: core field @@ -10953,7 +10950,7 @@ slots: title: injection water fraction examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - injection water fraction is_a: core field @@ -10973,7 +10970,7 @@ slots: title: last time swept/mopped/vacuumed examples: - value: 2018-05-11:T14:30Z - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - last time swept/mopped/vacuumed is_a: core field @@ -10991,7 +10988,7 @@ slots: title: geographic location (latitude and longitude) examples: - value: 50.586825 6.408977 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - geographic location (latitude and longitude) is_a: environment field @@ -11015,7 +11012,7 @@ slots: title: light intensity examples: - value: 0.3 lux - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - light intensity is_a: core field @@ -11039,7 +11036,7 @@ slots: title: light regimen examples: - value: incandescant light;10 lux;450 nanometer - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - light regimen is_a: core field @@ -11063,7 +11060,7 @@ slots: title: light type examples: - value: desk lamp - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - light type is_a: core field @@ -11083,7 +11080,7 @@ slots: title: links to additional analysis examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - links to additional analysis is_a: core field @@ -11104,7 +11101,7 @@ slots: title: link to classification information examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - link to classification information is_a: core field @@ -11125,7 +11122,7 @@ slots: title: link to climate information examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - link to climate information is_a: core field @@ -11147,7 +11144,7 @@ slots: title: lithology examples: - value: Volcanic - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - lithology is_a: core field @@ -11167,7 +11164,7 @@ slots: title: soil_taxonomic/local classification examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - soil_taxonomic/local classification is_a: core field @@ -11188,7 +11185,7 @@ slots: title: soil_taxonomic/local classification method examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - soil_taxonomic/local classification method is_a: core field @@ -11213,7 +11210,7 @@ slots: title: magnesium examples: - value: 52.8 micromole per kilogram - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - magnesium is_a: core field @@ -11233,7 +11230,7 @@ slots: title: maximum occupancy examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - maximum occupancy is_a: core field @@ -11256,7 +11253,7 @@ slots: title: mean friction velocity examples: - value: 0.5 meter per second - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - mean friction velocity is_a: core field @@ -11279,7 +11276,7 @@ slots: title: mean peak friction velocity examples: - value: 1 meter per second - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - mean peak friction velocity is_a: core field @@ -11299,7 +11296,7 @@ slots: title: mechanical structure examples: - value: elevator - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - mechanical structure is_a: core field @@ -11320,7 +11317,7 @@ slots: title: mechanical damage examples: - value: pruning;bark - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - mechanical damage is_a: core field @@ -11344,7 +11341,7 @@ slots: title: methane examples: - value: 1800 parts per billion - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - methane is_a: core field @@ -11364,7 +11361,7 @@ slots: title: microbial biomass method examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - microbial biomass method is_a: core field @@ -11390,7 +11387,7 @@ slots: title: microbial biomass examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - microbial biomass is_a: core field @@ -11418,7 +11415,7 @@ slots: title: mineral nutrient regimen examples: - value: potassium;15 gram;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - mineral nutrient regimen is_a: core field @@ -11440,7 +11437,7 @@ slots: title: miscellaneous parameter examples: - value: Bicarbonate ion concentration;2075 micromole per kilogram - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - miscellaneous parameter is_a: core field @@ -11464,7 +11461,7 @@ slots: title: n-alkanes examples: - value: n-hexadecane;100 milligram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - n-alkanes is_a: core field @@ -11488,7 +11485,7 @@ slots: title: nitrate examples: - value: 65 micromole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - nitrate is_a: core field @@ -11511,7 +11508,7 @@ slots: title: nitrite examples: - value: 0.5 micromole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - nitrite is_a: core field @@ -11534,7 +11531,7 @@ slots: title: nitrogen examples: - value: 4.2 micromole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - nitrogen is_a: core field @@ -11562,7 +11559,7 @@ slots: title: non-mineral nutrient regimen examples: - value: carbon dioxide;10 mole per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - non-mineral nutrient regimen is_a: core field @@ -11582,7 +11579,7 @@ slots: title: nucleic acid amplification examples: - value: https://phylogenomics.me/protocols/16s-pcr-protocol/ - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - nucleic acid amplification is_a: sequencing field @@ -11602,7 +11599,7 @@ slots: title: nucleic acid extraction examples: - value: https://mobio.com/media/wysiwyg/pdfs/protocols/12888.pdf - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - nucleic acid extraction is_a: sequencing field @@ -11623,7 +11620,7 @@ slots: title: number of pets examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - number of pets is_a: core field @@ -11643,7 +11640,7 @@ slots: title: number of houseplants examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - number of houseplants is_a: core field @@ -11663,7 +11660,7 @@ slots: title: number of residents examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - number of residents is_a: core field @@ -11683,7 +11680,7 @@ slots: title: occupant density at sampling examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - occupant density at sampling is_a: core field @@ -11703,7 +11700,7 @@ slots: title: occupancy documentation examples: - value: estimate - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - occupancy documentation is_a: core field @@ -11723,7 +11720,7 @@ slots: title: occupancy at sampling examples: - value: '10' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - occupancy at sampling is_a: core field @@ -11746,7 +11743,7 @@ slots: title: organic carbon examples: - value: 1.5 microgram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - organic carbon is_a: core field @@ -11775,7 +11772,7 @@ slots: title: organism count qPCR information examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - organism count qPCR information is_a: core field @@ -11800,7 +11797,7 @@ slots: title: organic matter examples: - value: 1.75 milligram per cubic meter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - organic matter is_a: core field @@ -11823,7 +11820,7 @@ slots: title: organic nitrogen examples: - value: 4 micromole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - organic nitrogen is_a: core field @@ -11847,7 +11844,7 @@ slots: title: organic particles examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - organic particles is_a: core field @@ -11875,7 +11872,7 @@ slots: title: organism count examples: - value: total prokaryotes;3.5e7 cells per milliliter;qPCR - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - organism count is_a: core field @@ -11898,7 +11895,7 @@ slots: title: oil water contact depth examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - oil water contact depth is_a: core field @@ -11918,7 +11915,7 @@ slots: title: oxygenation status of sample examples: - value: aerobic - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - oxygenation status of sample is_a: core field @@ -11941,7 +11938,7 @@ slots: title: oxygen examples: - value: 600 parts per million - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - oxygen is_a: core field @@ -11964,7 +11961,7 @@ slots: title: particulate organic carbon examples: - value: 1.92 micromole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - particulate organic carbon is_a: core field @@ -11987,7 +11984,7 @@ slots: title: particulate organic nitrogen examples: - value: 0.3 micromole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - particulate organic nitrogen is_a: core field @@ -12012,7 +12009,7 @@ slots: title: particle classification examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - particle classification is_a: core field @@ -12032,7 +12029,7 @@ slots: title: pcr conditions examples: - value: initial denaturation:94_3;annealing:50_1;elongation:72_1.5;final elongation:72_10;35 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - pcr conditions is_a: sequencing field @@ -12054,7 +12051,7 @@ slots: title: pcr primers examples: - value: FWD:GTGCCAGCMGCCGCGGTAA;REV:GGACTACHVGGGTWTCTAAT - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - pcr primers is_a: sequencing field @@ -12079,7 +12076,7 @@ slots: title: permeability examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - permeability is_a: core field @@ -12103,7 +12100,7 @@ slots: title: perturbation examples: - value: antibiotic addition;R2/2018-05-11T14:30Z/2018-05-11T19:30Z/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - perturbation is_a: core field @@ -12131,7 +12128,7 @@ slots: title: pesticide regimen examples: - value: pyrethrum;0.6 milligram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - pesticide regimen is_a: core field @@ -12155,7 +12152,7 @@ slots: title: petroleum hydrocarbon examples: - value: 0.05 micromole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - petroleum hydrocarbon is_a: core field @@ -12176,7 +12173,7 @@ slots: title: pH examples: - value: '7.2' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - pH is_a: core field @@ -12196,7 +12193,7 @@ slots: title: pH method examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - pH method is_a: core field @@ -12220,7 +12217,7 @@ slots: title: pH regimen examples: - value: 7.6;R2/2018-05-11:T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - pH regimen is_a: core field @@ -12244,7 +12241,7 @@ slots: title: phaeopigments examples: - value: 2.5 milligram per cubic meter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - phaeopigments is_a: core field @@ -12268,7 +12265,7 @@ slots: title: phosphate examples: - value: 0.7 micromole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - phosphate is_a: core field @@ -12291,7 +12288,7 @@ slots: title: phospholipid fatty acid examples: - value: 2.98 milligram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - phospholipid fatty acid is_a: core field @@ -12315,7 +12312,7 @@ slots: title: photon flux examples: - value: 3.926 micromole photons per second per square meter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - photon flux is_a: core field @@ -12339,7 +12336,7 @@ slots: title: plant growth medium examples: - value: hydroponic plant culture media [EO:0007067] - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - plant growth medium is_a: core field @@ -12359,7 +12356,7 @@ slots: title: plant product examples: - value: xylem sap [PO:0025539] - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - plant product is_a: core field @@ -12381,7 +12378,7 @@ slots: title: plant sex examples: - value: Hermaphroditic - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - plant sex is_a: core field @@ -12404,7 +12401,7 @@ slots: title: plant structure examples: - value: epidermis [PO:0005679] - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - plant structure is_a: core field @@ -12430,7 +12427,7 @@ slots: title: pollutants examples: - value: lead;0.15 microgram per cubic meter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - pollutants is_a: core field @@ -12452,7 +12449,7 @@ slots: title: pooling of DNA extracts (if done) examples: - value: yes;5 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - pooling of DNA extracts (if done) is_a: core field @@ -12477,7 +12474,7 @@ slots: title: porosity examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - porosity is_a: core field @@ -12501,7 +12498,7 @@ slots: title: potassium examples: - value: 463 milligram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - potassium is_a: core field @@ -12527,7 +12524,7 @@ slots: title: pour point examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - pour point is_a: core field @@ -12548,7 +12545,7 @@ slots: title: pre-treatment examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - pre-treatment is_a: core field @@ -12570,7 +12567,7 @@ slots: title: presence of pets, animals, or insects examples: - value: cat;5 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - presence of pets, animals, or insects is_a: core field @@ -12594,7 +12591,7 @@ slots: title: pressure examples: - value: 50 atmosphere - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - pressure is_a: core field @@ -12614,7 +12611,7 @@ slots: title: history/previous land use method examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - history/previous land use method is_a: core field @@ -12635,7 +12632,7 @@ slots: title: history/previous land use examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - history/previous land use is_a: core field @@ -12660,7 +12657,7 @@ slots: title: primary production examples: - value: 100 milligram per cubic meter per day - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - primary production is_a: core field @@ -12682,7 +12679,7 @@ slots: title: primary treatment examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - primary treatment is_a: core field @@ -12706,7 +12703,7 @@ slots: title: production rate examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - production rate is_a: core field @@ -12726,7 +12723,7 @@ slots: title: production start date examples: - value: '2018-05-11' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - production start date is_a: core field @@ -12747,7 +12744,7 @@ slots: title: profile position examples: - value: summit - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - profile position is_a: core field @@ -12767,7 +12764,7 @@ slots: title: quadrant position examples: - value: West side - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - quadrant position is_a: core field @@ -12794,7 +12791,7 @@ slots: title: radiation regimen examples: - value: gamma radiation;60 gray;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - radiation regimen is_a: core field @@ -12821,7 +12818,7 @@ slots: title: rainfall regimen examples: - value: 15 millimeter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - rainfall regimen is_a: core field @@ -12844,7 +12841,7 @@ slots: title: reactor type examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - reactor type is_a: core field @@ -12869,7 +12866,7 @@ slots: title: redox potential examples: - value: 300 millivolt - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - redox potential is_a: core field @@ -12893,7 +12890,7 @@ slots: title: relative air humidity examples: - value: 80% - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - relative air humidity is_a: core field @@ -12916,7 +12913,7 @@ slots: title: outside relative humidity examples: - value: 12 per kilogram of air - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - outside relative humidity is_a: core field @@ -12936,7 +12933,7 @@ slots: title: relative sampling location examples: - value: center of car - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - relative sampling location is_a: core field @@ -12956,7 +12953,7 @@ slots: title: reservoir name examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - reservoir name is_a: core field @@ -12984,7 +12981,7 @@ slots: title: resins wt% examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - resins wt% is_a: core field @@ -13008,7 +13005,7 @@ slots: title: room air exchange rate examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - room air exchange rate is_a: core field @@ -13029,7 +13026,7 @@ slots: title: room architectural elements examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - room architectural elements is_a: core field @@ -13050,7 +13047,7 @@ slots: title: room condition examples: - value: new - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - room condition is_a: core field @@ -13070,7 +13067,7 @@ slots: title: rooms connected by a doorway examples: - value: office - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - rooms connected by a doorway is_a: core field @@ -13091,7 +13088,7 @@ slots: title: room count examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - room count is_a: core field @@ -13114,7 +13111,7 @@ slots: title: room dimensions examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - room dimensions is_a: core field @@ -13139,7 +13136,7 @@ slots: title: room door distance examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - room door distance is_a: core field @@ -13161,7 +13158,7 @@ slots: title: rooms that share a door with sampling room examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - rooms that share a door with sampling room is_a: core field @@ -13183,7 +13180,7 @@ slots: title: rooms that are on the same hallway examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - rooms that are on the same hallway is_a: core field @@ -13204,7 +13201,7 @@ slots: title: room location in building examples: - value: interior room - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - room location in building is_a: core field @@ -13225,7 +13222,7 @@ slots: title: room moisture damage or mold history examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - room moisture damage or mold history is_a: core field @@ -13248,7 +13245,7 @@ slots: title: room net area examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - room net area is_a: core field @@ -13269,7 +13266,7 @@ slots: title: room occupancy examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - room occupancy is_a: core field @@ -13290,7 +13287,7 @@ slots: title: room sampling position examples: - value: south corner - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - room sampling position is_a: core field @@ -13311,7 +13308,7 @@ slots: title: room type examples: - value: bathroom - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - room type is_a: core field @@ -13334,7 +13331,7 @@ slots: title: room volume examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - room volume is_a: core field @@ -13356,7 +13353,7 @@ slots: title: rooms that share a wall with sampling room examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - rooms that share a wall with sampling room is_a: core field @@ -13377,7 +13374,7 @@ slots: title: room window count examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - room window count is_a: core field @@ -13398,7 +13395,7 @@ slots: title: rooting conditions examples: - value: http://himedialabs.com/TD/PT158.pdf - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - rooting conditions is_a: core field @@ -13422,7 +13419,7 @@ slots: title: rooting medium carbon examples: - value: sucrose - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - rooting medium carbon is_a: core field @@ -13447,7 +13444,7 @@ slots: title: rooting medium macronutrients examples: - value: KH2PO4;170 milligram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - rooting medium macronutrients is_a: core field @@ -13472,7 +13469,7 @@ slots: title: rooting medium micronutrients examples: - value: H3BO3;6.2 milligram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - rooting medium micronutrients is_a: core field @@ -13493,7 +13490,7 @@ slots: title: rooting medium pH examples: - value: '7.5' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - rooting medium pH is_a: core field @@ -13517,7 +13514,7 @@ slots: title: rooting medium regulators examples: - value: abscisic acid;0.75 milligram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - rooting medium regulators is_a: core field @@ -13539,7 +13536,7 @@ slots: title: rooting medium solidifier examples: - value: agar - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - rooting medium solidifier is_a: core field @@ -13565,7 +13562,7 @@ slots: title: rooting medium organic supplements examples: - value: nicotinic acid;0.5 milligram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - rooting medium organic supplements is_a: core field @@ -13594,7 +13591,7 @@ slots: title: salinity examples: - value: 25 practical salinity unit - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - salinity is_a: core field @@ -13614,7 +13611,7 @@ slots: title: salinity method examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - salinity method is_a: core field @@ -13642,7 +13639,7 @@ slots: title: salt regimen examples: - value: NaCl;5 gram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - salt regimen is_a: core field @@ -13663,7 +13660,7 @@ slots: title: sample capture status examples: - value: farm sample - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample capture status is_a: core field @@ -13682,7 +13679,7 @@ slots: title: sample collection device examples: - value: swab, biopsy, niskin bottle, push core, drag swab [GENEPIO:0002713] - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample collection device is_a: nucleic acid sequence source field @@ -13700,7 +13697,7 @@ slots: title: sample collection method examples: - value: swabbing - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample collection method is_a: nucleic acid sequence source field @@ -13723,7 +13720,7 @@ slots: title: sample collection point examples: - value: well - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample collection point is_a: core field @@ -13744,7 +13741,7 @@ slots: title: sample disease stage examples: - value: infection - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample disease stage is_a: core field @@ -13764,7 +13761,7 @@ slots: title: sampling floor examples: - value: 4th floor - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sampling floor is_a: core field @@ -13793,7 +13790,7 @@ slots: title: corrosion rate at sample location examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - corrosion rate at sample location is_a: core field @@ -13813,7 +13810,7 @@ slots: title: sample material processing examples: - value: filtering of seawater, storing samples in ethanol - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample material processing is_a: nucleic acid sequence source field @@ -13842,7 +13839,7 @@ slots: title: sample measured depth examples: - value: 1534 meter;MSL - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample measured depth is_a: core field @@ -13865,7 +13862,7 @@ slots: title: sample name examples: - value: ISDsoil1 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample name is_a: investigation field @@ -13890,7 +13887,7 @@ slots: title: preservative added to sample examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - preservative added to sample is_a: core field @@ -13912,7 +13909,7 @@ slots: title: sampling room ID or name examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sampling room ID or name is_a: core field @@ -13933,7 +13930,7 @@ slots: title: amount or size of sample collected examples: - value: 5 liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - amount or size of sample collected is_a: nucleic acid sequence source field @@ -13956,7 +13953,7 @@ slots: title: sample size sorting method examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample size sorting method is_a: core field @@ -13977,7 +13974,7 @@ slots: title: sample storage duration examples: - value: P1Y6M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample storage duration is_a: core field @@ -13998,7 +13995,7 @@ slots: title: sample storage location examples: - value: Freezer no:5 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample storage location is_a: core field @@ -14022,7 +14019,7 @@ slots: title: sample storage temperature examples: - value: -80 degree Celsius - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample storage temperature is_a: core field @@ -14044,7 +14041,7 @@ slots: title: sample subtype examples: - value: biofilm - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample subtype is_a: core field @@ -14063,7 +14060,7 @@ slots: title: Taxonomy ID of DNA sample comments: - coal metagenome [NCBITaxon:1260732] would be a reasonable has_raw_value - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - Taxonomy ID of DNA sample is_a: investigation field @@ -14086,7 +14083,7 @@ slots: title: sampling time outside examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sampling time outside is_a: core field @@ -14110,7 +14107,7 @@ slots: title: sample transport conditions examples: - value: 5 days;-20 degree Celsius - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample transport conditions is_a: core field @@ -14136,7 +14133,7 @@ slots: title: sample true vertical depth subsea examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample true vertical depth subsea is_a: core field @@ -14162,7 +14159,7 @@ slots: title: sample type examples: - value: built environment sample [GENEPIO:0001248] - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample type is_a: core field @@ -14185,7 +14182,7 @@ slots: title: sample volume or weight for DNA extraction examples: - value: 1500 milliliter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample volume or weight for DNA extraction is_a: nucleic acid sequence source field @@ -14205,7 +14202,7 @@ slots: title: sampling day weather examples: - value: foggy - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sampling day weather is_a: core field @@ -14225,7 +14222,7 @@ slots: title: sample well name examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample well name is_a: core field @@ -14253,7 +14250,7 @@ slots: title: saturates wt% examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - saturates wt% is_a: core field @@ -14276,7 +14273,7 @@ slots: title: season examples: - value: autumn [NCIT:C94733] - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - season is_a: core field @@ -14300,7 +14297,7 @@ slots: title: seasonal environment examples: - value: rainy;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - seasonal environment is_a: core field @@ -14325,7 +14322,7 @@ slots: title: mean seasonal precipitation examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - mean seasonal precipitation is_a: core field @@ -14348,7 +14345,7 @@ slots: title: mean seasonal temperature examples: - value: 18 degree Celsius - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - mean seasonal temperature is_a: core field @@ -14368,7 +14365,7 @@ slots: title: seasonal use examples: - value: Winter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - seasonal use is_a: core field @@ -14389,7 +14386,7 @@ slots: title: secondary treatment examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - secondary treatment is_a: core field @@ -14410,7 +14407,7 @@ slots: title: sediment type examples: - value: biogenous - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sediment type is_a: core field @@ -14428,7 +14425,7 @@ slots: title: sequencing method examples: - value: 454 Genome Sequencer FLX [OBI:0000702] - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sequencing method is_a: sequencing field @@ -14449,7 +14446,7 @@ slots: title: sequence quality check examples: - value: none - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sequence quality check is_a: sequencing field @@ -14470,7 +14467,7 @@ slots: title: sewage type examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sewage type is_a: core field @@ -14491,7 +14488,7 @@ slots: title: shading device signs of water/mold examples: - value: no presence of mold visible - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - shading device signs of water/mold is_a: core field @@ -14512,7 +14509,7 @@ slots: title: shading device condition examples: - value: new - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - shading device condition is_a: core field @@ -14532,7 +14529,7 @@ slots: title: shading device location examples: - value: exterior - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - shading device location is_a: core field @@ -14553,7 +14550,7 @@ slots: title: shading device material examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - shading device material is_a: core field @@ -14574,7 +14571,7 @@ slots: title: shading device type examples: - value: slatted aluminum awning - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - shading device type is_a: core field @@ -14595,7 +14592,7 @@ slots: title: composite design/sieving examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - composite design/sieving is_a: core field @@ -14619,7 +14616,7 @@ slots: title: silicate examples: - value: 0.05 micromole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - silicate is_a: core field @@ -14636,7 +14633,7 @@ slots: title: size fraction selected examples: - value: 0-0.22 micrometer - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - size fraction selected is_a: nucleic acid sequence source field @@ -14661,7 +14658,7 @@ slots: title: size-fraction lower threshold examples: - value: 0.2 micrometer - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - size-fraction lower threshold is_a: core field @@ -14685,7 +14682,7 @@ slots: title: size-fraction upper threshold examples: - value: 20 micrometer - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - size-fraction upper threshold is_a: core field @@ -14711,7 +14708,7 @@ slots: title: slope aspect examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - slope aspect is_a: core field @@ -14736,7 +14733,7 @@ slots: title: slope gradient examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - slope gradient is_a: core field @@ -14759,7 +14756,7 @@ slots: title: sludge retention time examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sludge retention time is_a: core field @@ -14782,7 +14779,7 @@ slots: title: sodium examples: - value: 10.5 milligram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sodium is_a: core field @@ -14804,7 +14801,7 @@ slots: title: soil horizon examples: - value: A horizon - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - soil horizon is_a: core field @@ -14827,7 +14824,7 @@ slots: title: soil texture measurement examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - soil texture measurement is_a: core field @@ -14847,7 +14844,7 @@ slots: title: soil texture method examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - soil texture method is_a: core field @@ -14870,7 +14867,7 @@ slots: title: soil type examples: - value: plinthosol [ENVO:00002250] - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - soil type is_a: core field @@ -14892,7 +14889,7 @@ slots: title: soil type method examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - soil type method is_a: core field @@ -14918,7 +14915,7 @@ slots: title: solar irradiance examples: - value: 1.36 kilowatts per square meter per day - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - solar irradiance is_a: core field @@ -14942,7 +14939,7 @@ slots: title: soluble inorganic material examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - soluble inorganic material is_a: core field @@ -14967,7 +14964,7 @@ slots: title: soluble organic material examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - soluble organic material is_a: core field @@ -14991,7 +14988,7 @@ slots: title: soluble reactive phosphorus examples: - value: 0.1 milligram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - soluble reactive phosphorus is_a: core field @@ -15020,7 +15017,7 @@ slots: title: source material identifiers examples: - value: MPI012345 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - source material identifiers is_a: nucleic acid sequence source field @@ -15041,7 +15038,7 @@ slots: title: space typical state examples: - value: typically occupied - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - space typical state is_a: core field @@ -15063,7 +15060,7 @@ slots: title: specifications examples: - value: construction - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - specifications is_a: core field @@ -15088,7 +15085,7 @@ slots: title: specific humidity examples: - value: 15 per kilogram of air - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - specific humidity is_a: core field @@ -15109,7 +15106,7 @@ slots: title: source rock depositional environment examples: - value: Marine - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - source rock depositional environment is_a: core field @@ -15130,7 +15127,7 @@ slots: title: source rock geological age examples: - value: Silurian - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - source rock geological age is_a: core field @@ -15154,7 +15151,7 @@ slots: title: source rock kerogen type examples: - value: Type IV - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - source rock kerogen type is_a: core field @@ -15175,7 +15172,7 @@ slots: title: source rock lithology examples: - value: Coal - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - source rock lithology is_a: core field @@ -15198,7 +15195,7 @@ slots: title: standing water regimen examples: - value: standing water;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - standing water regimen is_a: core field @@ -15220,7 +15217,7 @@ slots: title: storage conditions examples: - value: -20 degree Celsius freezer;P2Y10D - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - storage conditions is_a: core field @@ -15242,7 +15239,7 @@ slots: title: substructure type examples: - value: basement - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - substructure type is_a: core field @@ -15265,7 +15262,7 @@ slots: title: sulfate examples: - value: 5 micromole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sulfate is_a: core field @@ -15288,7 +15285,7 @@ slots: title: sulfate in formation water examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sulfate in formation water is_a: core field @@ -15311,7 +15308,7 @@ slots: title: sulfide examples: - value: 2 micromole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sulfide is_a: core field @@ -15331,7 +15328,7 @@ slots: title: surface-air contaminant examples: - value: radon - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - surface-air contaminant is_a: core field @@ -15354,7 +15351,7 @@ slots: title: surface humidity examples: - value: 10% - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - surface humidity is_a: core field @@ -15374,7 +15371,7 @@ slots: title: surface material examples: - value: wood - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - surface material is_a: core field @@ -15397,7 +15394,7 @@ slots: title: surface moisture examples: - value: 0.01 gram per square meter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - surface moisture is_a: core field @@ -15417,7 +15414,7 @@ slots: title: surface moisture pH examples: - value: '7' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - surface moisture pH is_a: core field @@ -15440,7 +15437,7 @@ slots: title: surface temperature examples: - value: 15 degree Celsius - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - surface temperature is_a: core field @@ -15463,7 +15460,7 @@ slots: title: suspended particulate matter examples: - value: 0.5 milligram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - suspended particulate matter is_a: core field @@ -15488,7 +15485,7 @@ slots: title: suspended solids examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - suspended solids is_a: core field @@ -15515,7 +15512,7 @@ slots: title: total acid number examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - total acid number is_a: core field @@ -15532,7 +15529,7 @@ slots: title: target gene examples: - value: 16S rRNA, 18S rRNA, nif, amoA, rpo - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - target gene is_a: sequencing field @@ -15551,7 +15548,7 @@ slots: title: target subfragment examples: - value: V6, V9, ITS - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - target subfragment is_a: sequencing field @@ -15572,7 +15569,7 @@ slots: title: temperature examples: - value: 25 degree Celsius - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - temperature is_a: environment field @@ -15595,7 +15592,7 @@ slots: title: temperature outside house examples: - value: 5 degree Celsius - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - temperature outside house is_a: core field @@ -15616,7 +15613,7 @@ slots: title: tertiary treatment examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - tertiary treatment is_a: core field @@ -15637,7 +15634,7 @@ slots: title: tidal stage examples: - value: high tide - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - tidal stage is_a: core field @@ -15657,7 +15654,7 @@ slots: title: history/tillage examples: - value: chisel - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - history/tillage is_a: core field @@ -15677,7 +15674,7 @@ slots: title: tissue culture growth media examples: - value: https://link.springer.com/content/pdf/10.1007/BF02796489.pdf - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - tissue culture growth media is_a: core field @@ -15701,7 +15698,7 @@ slots: title: toluene examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - toluene is_a: core field @@ -15724,7 +15721,7 @@ slots: title: total carbon examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - total carbon is_a: core field @@ -15747,7 +15744,7 @@ slots: title: total depth of water column examples: - value: 500 meter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - total depth of water column is_a: core field @@ -15771,7 +15768,7 @@ slots: title: total dissolved nitrogen examples: - value: 40 microgram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - total dissolved nitrogen is_a: core field @@ -15794,7 +15791,7 @@ slots: title: total inorganic nitrogen examples: - value: 40 microgram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - total inorganic nitrogen is_a: core field @@ -15817,7 +15814,7 @@ slots: title: total iron examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - total iron is_a: core field @@ -15842,7 +15839,7 @@ slots: title: total nitrogen concentration examples: - value: 50 micromole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - total nitrogen concentration is_a: core field @@ -15862,7 +15859,7 @@ slots: title: total nitrogen content method examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - total nitrogen content method is_a: core field @@ -15886,7 +15883,7 @@ slots: title: total nitrogen content examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - total nitrogen content is_a: core field @@ -15906,7 +15903,7 @@ slots: title: total organic carbon method examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - total organic carbon method is_a: core field @@ -15931,7 +15928,7 @@ slots: title: total organic carbon examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - total organic carbon is_a: core field @@ -15954,7 +15951,7 @@ slots: title: total particulate carbon examples: - value: 35 micromole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - total particulate carbon is_a: core field @@ -15978,7 +15975,7 @@ slots: title: total phosphorus examples: - value: 0.03 milligram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - total phosphorus is_a: core field @@ -16001,7 +15998,7 @@ slots: title: total phosphate examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - total phosphate is_a: core field @@ -16024,7 +16021,7 @@ slots: title: total sulfur examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - total sulfur is_a: core field @@ -16044,7 +16041,7 @@ slots: title: train line examples: - value: red - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - train line is_a: core field @@ -16064,7 +16061,7 @@ slots: title: train station collection location examples: - value: forest hills - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - train station collection location is_a: core field @@ -16084,7 +16081,7 @@ slots: title: train stop collection location examples: - value: end - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - train stop collection location is_a: core field @@ -16108,7 +16105,7 @@ slots: title: turbidity examples: - value: 0.3 nephelometric turbidity units - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - turbidity is_a: core field @@ -16132,7 +16129,7 @@ slots: title: depth (TVDSS) of hydrocarbon resource pressure examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - depth (TVDSS) of hydrocarbon resource pressure is_a: core field @@ -16156,7 +16153,7 @@ slots: title: depth (TVDSS) of hydrocarbon resource temperature examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - depth (TVDSS) of hydrocarbon resource temperature is_a: core field @@ -16176,7 +16173,7 @@ slots: title: typical occupant density examples: - value: '25' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - typical occupant density is_a: core field @@ -16199,7 +16196,7 @@ slots: title: ventilation rate examples: - value: 750 cubic meter per minute - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - ventilation rate is_a: core field @@ -16219,7 +16216,7 @@ slots: title: ventilation type examples: - value: Operable windows - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - ventilation type is_a: core field @@ -16243,7 +16240,7 @@ slots: title: volatile fatty acids examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - volatile fatty acids is_a: core field @@ -16266,7 +16263,7 @@ slots: title: vfa in formation water examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - vfa in formation water is_a: core field @@ -16286,7 +16283,7 @@ slots: title: visual media examples: - value: 3D scans - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - visual media is_a: core field @@ -16310,7 +16307,7 @@ slots: title: viscosity examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - viscosity is_a: core field @@ -16336,7 +16333,7 @@ slots: title: volatile organic compounds examples: - value: formaldehyde;500 nanogram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - volatile organic compounds is_a: core field @@ -16360,7 +16357,7 @@ slots: title: wall area examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - wall area is_a: core field @@ -16381,7 +16378,7 @@ slots: title: wall construction type examples: - value: fire resistive - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - wall construction type is_a: core field @@ -16401,7 +16398,7 @@ slots: title: wall finish material examples: - value: wood - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - wall finish material is_a: core field @@ -16424,7 +16421,7 @@ slots: title: wall height examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - wall height is_a: core field @@ -16444,7 +16441,7 @@ slots: title: wall location examples: - value: north - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - wall location is_a: core field @@ -16464,7 +16461,7 @@ slots: title: wall surface treatment examples: - value: paneling - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - wall surface treatment is_a: core field @@ -16484,7 +16481,7 @@ slots: title: wall texture examples: - value: popcorn - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - wall texture is_a: core field @@ -16509,7 +16506,7 @@ slots: title: wall thermal mass examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - wall thermal mass is_a: core field @@ -16529,7 +16526,7 @@ slots: title: wall signs of water/mold examples: - value: no presence of mold visible - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - wall signs of water/mold is_a: core field @@ -16551,7 +16548,7 @@ slots: title: wastewater type examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - wastewater type is_a: core field @@ -16572,7 +16569,7 @@ slots: title: water content method examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - water content method is_a: core field @@ -16596,7 +16593,7 @@ slots: title: water content examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - water content is_a: core field @@ -16619,7 +16616,7 @@ slots: title: water current examples: - value: 10 cubic meter per second - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - water current is_a: core field @@ -16643,7 +16640,7 @@ slots: title: water cut examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - water cut is_a: core field @@ -16666,7 +16663,7 @@ slots: title: water feature size examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - water feature size is_a: core field @@ -16686,7 +16683,7 @@ slots: title: water feature type examples: - value: stream - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - water feature type is_a: core field @@ -16709,7 +16706,7 @@ slots: title: water production rate examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - water production rate is_a: core field @@ -16735,7 +16732,7 @@ slots: title: water temperature regimen examples: - value: 15 degree Celsius;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - water temperature regimen is_a: core field @@ -16762,7 +16759,7 @@ slots: title: watering regimen examples: - value: 1 liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - watering regimen is_a: core field @@ -16783,7 +16780,7 @@ slots: title: weekday examples: - value: Sunday - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - weekday is_a: core field @@ -16806,7 +16803,7 @@ slots: title: well identification number examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - well identification number is_a: core field @@ -16827,7 +16824,7 @@ slots: title: wind direction examples: - value: Northwest - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - wind direction is_a: core field @@ -16851,7 +16848,7 @@ slots: title: wind speed examples: - value: 21 kilometer per hour - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - wind speed is_a: core field @@ -16871,7 +16868,7 @@ slots: title: window condition examples: - value: rupture - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - window condition is_a: core field @@ -16891,7 +16888,7 @@ slots: title: window covering examples: - value: curtains - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - window covering is_a: core field @@ -16911,7 +16908,7 @@ slots: title: window horizontal position examples: - value: middle - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - window horizontal position is_a: core field @@ -16931,7 +16928,7 @@ slots: title: window location examples: - value: west - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - window location is_a: core field @@ -16951,7 +16948,7 @@ slots: title: window material examples: - value: wood - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - window material is_a: core field @@ -16971,7 +16968,7 @@ slots: title: window open frequency examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - window open frequency is_a: core field @@ -16994,7 +16991,7 @@ slots: title: window area/size examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - window area/size is_a: core field @@ -17016,7 +17013,7 @@ slots: title: window status examples: - value: open - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - window status is_a: core field @@ -17037,7 +17034,7 @@ slots: title: window type examples: - value: fixed window - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - window type is_a: core field @@ -17057,7 +17054,7 @@ slots: title: window vertical position examples: - value: middle - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - window vertical position is_a: core field @@ -17077,7 +17074,7 @@ slots: title: window signs of water/mold examples: - value: no presence of mold visible - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - window signs of water/mold is_a: core field @@ -17101,7 +17098,7 @@ slots: title: xylene examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - xylene is_a: core field @@ -17110,54 +17107,54 @@ slots: range: QuantityValue sequencing field: name: sequencing field - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc + abstract: true + environment field: + name: environment field + description: field describing environmental aspect of a sample + from_schema: https://w3id.org/nmdc/nmdc abstract: true - has numeric value: - name: has numeric value - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - owner: QuantityValue - range: double investigation field: name: investigation field description: field describing aspect of the investigation/study to which the sample belongs - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - abstract: true - core field: - name: core field - description: basic fields - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc abstract: true + has numeric value: + name: has numeric value + from_schema: https://w3id.org/nmdc/nmdc + owner: QuantityValue + range: double + has raw value: + name: has raw value + from_schema: https://w3id.org/nmdc/nmdc + string_serialization: '{has numeric value} {has unit}' + owner: QuantityValue nucleic acid sequence source field: name: nucleic acid sequence source field - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc abstract: true - environment field: - name: environment field - description: field describing environmental aspect of a sample - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + core field: + name: core field + description: basic fields + from_schema: https://w3id.org/nmdc/nmdc abstract: true has unit: name: has unit description: Example "m" - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - owner: QuantityValue - has raw value: - name: has raw value - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - string_serialization: '{has numeric value} {has unit}' + from_schema: https://w3id.org/nmdc/nmdc owner: QuantityValue chemical: name: chemical description: from reaction participant class - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc stoichiometry: name: stoichiometry description: from reaction participant class - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc subject: name: subject - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: GeneProduct has_function: name: has_function @@ -17165,11 +17162,11 @@ slots: - the range for has_function was asserted as functional_annotation_term/FunctionalAnnotationTerm, - but is actually taking string arguments in MongoDB, - and those are frequently fulltext, not CURIEs. MAM 2021-06-23 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string has_participants: name: has_participants - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc exact_mappings: - RO:0000057 abstract: true @@ -17181,64 +17178,64 @@ slots: genomes, plasmids, and some viral genomes), the requirement for start to be less than or equal to end is satisfied by making end = the position of the end + the length of the landmark feature. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer minimum_value: 1 seqid: name: seqid todos: - change range from string to object - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc strand: name: strand todos: - set the range to an enum? - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc direction: name: direction - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc encodes: name: encodes - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc end: name: end - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc feature_type: name: feature_type - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc has_part: name: has_part - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_balanced: name: is_balanced - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_diastereoselective: name: is_diastereoselective - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_fully_characterized: name: is_fully_characterized - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_stereo: name: is_stereo - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_transport: name: is_transport - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc left_participants: name: left_participants - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc phase: name: phase - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc right_participants: name: right_participants - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc smarts_string: name: smarts_string - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc start: name: start - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc classes: Database: name: Database @@ -17246,7 +17243,7 @@ classes: need to correspond to an actual managed database top level holder class. When translated to JSON-Schema this is the 'root' object. It should contain pointers to other objects of interest - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - NMDC metadata object slots: @@ -17294,7 +17291,7 @@ classes: tree_root: true Pooling: name: Pooling - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: PlannedProcess slot_usage: has_input: @@ -17313,7 +17310,7 @@ classes: interpolated: true Extraction: name: Extraction - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: PlannedProcess slots: - extraction_method @@ -17338,13 +17335,13 @@ classes: interpolated: true Protocol: name: Protocol - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc slots: - url - name QualityControlReport: name: QualityControlReport - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc slots: - status - name @@ -17352,7 +17349,7 @@ classes: name: LibraryPreparation comments: - OBI:0000711 specifies a DNA input (but not ONLY a DNA input) - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - LibraryConstruction close_mappings: @@ -17389,7 +17386,7 @@ classes: the same plant were obtained at the same site. In this case, the site would correspond to one tree. - might correspond to GOLD's identifier on a page like https://gold.jgi.doe.gov/biosample?id=Gb0305833 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - research plot is_a: Site @@ -17418,7 +17415,7 @@ classes: title: Collecting Biosamples From Site comments: - this illustrates implementing a Biosample relation with a process class - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: PlannedProcess slot_usage: has_input: @@ -17447,7 +17444,7 @@ classes: - removed id_prefixes value of GOLD, since we are now using pattern-based id validation in_subset: - data object subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: NamedThing slots: - file_size_bytes @@ -17487,7 +17484,7 @@ classes: id validation in_subset: - sample subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample - material sample @@ -18575,7 +18572,7 @@ classes: but no longer for the Study.id in_subset: - sample subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - proposal - research proposal @@ -18700,7 +18697,7 @@ classes: description: A process that takes one or more biosamples as inputs and generates one or as outputs. Examples of outputs include samples cultivated from another sample or data objects created by instruments runs. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - material processing broad_mappings: @@ -18732,7 +18729,7 @@ classes: - The ID prefix for objects coming from GOLD will be gold:Gp in_subset: - sample subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - omics assay - sequencing project @@ -18782,7 +18779,7 @@ classes: will be at least a slot for a CRediT Contributor Role (https://casrai.org/credit/) and for a person value Specifically see the associated researchers tab on the NMDC_SampleMetadata-V4_CommentsForUpdates at https://docs.google.com/spreadsheets/d/1INlBo5eoqn2efn4H2P2i8rwRBtnbDVTqXrochJEAPko/edit#gid=0 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - study role - credit table @@ -18811,7 +18808,7 @@ classes: and stop times, potentially with different inputs and outputs in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - analysis is_a: Activity @@ -18866,7 +18863,7 @@ classes: relevant to NMDC in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: WorkflowExecutionActivity slots: - type @@ -18910,7 +18907,7 @@ classes: name: MetatranscriptomeAssembly in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: WorkflowExecutionActivity slots: - asm_score @@ -18955,7 +18952,7 @@ classes: annotation of assembled metagenome contigs in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: WorkflowExecutionActivity slots: - type @@ -18972,7 +18969,7 @@ classes: name: MetatranscriptomeAnnotationActivity in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: WorkflowExecutionActivity slots: - type @@ -18991,7 +18988,7 @@ classes: activity. in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: WorkflowExecutionActivity slots: - type @@ -19010,7 +19007,7 @@ classes: title: Metagenome-Assembled Genome analysis activity in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: WorkflowExecutionActivity slots: - type @@ -19035,7 +19032,7 @@ classes: title: Metagenome sequencing activity in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: WorkflowExecutionActivity slot_usage: id: @@ -19054,7 +19051,7 @@ classes: title: Read quality control analysis activity in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: WorkflowExecutionActivity slots: - type @@ -19080,7 +19077,7 @@ classes: title: Read based analysis activity in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: WorkflowExecutionActivity slots: - type @@ -19096,7 +19093,7 @@ classes: name: MetabolomicsAnalysisActivity in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: WorkflowExecutionActivity slots: - has_calibration @@ -19117,7 +19114,7 @@ classes: name: MetaproteomicsAnalysisActivity in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: WorkflowExecutionActivity slots: - has_peptide_quantifications @@ -19137,7 +19134,7 @@ classes: name: NomAnalysisActivity in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: WorkflowExecutionActivity slots: - has_calibration @@ -19156,7 +19153,7 @@ classes: NamedThing: name: NamedThing description: a databased entity or concept/class - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc abstract: true slots: - id @@ -19166,7 +19163,7 @@ classes: MaterialEntity: name: MaterialEntity title: Material Entity - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - Material - Physical entity @@ -19175,7 +19172,7 @@ classes: ProcessedSample: name: ProcessedSample title: Processed Sample - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: MaterialEntity slots: - biomaterial_purity @@ -19194,7 +19191,7 @@ classes: AnalyticalSample: name: AnalyticalSample title: Analytical Sample - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: MaterialEntity slot_usage: id: @@ -19209,7 +19206,7 @@ classes: title: Site comments: - BCO sample collection site ? - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: MaterialEntity abstract: true slot_usage: @@ -19223,7 +19220,7 @@ classes: PlannedProcess: name: PlannedProcess title: Planned Process - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: NamedThing abstract: true slots: @@ -19238,17 +19235,17 @@ classes: notes: - The identifiers for terms from external ontologies can't have their ids constrained to the nmdc namespace - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: NamedThing EnvironmentalMaterialTerm: name: EnvironmentalMaterialTerm - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: OntologyClass AttributeValue: name: AttributeValue description: The value for any value of a attribute for a sample. This object can hold both the un-normalized atomic value and the structured value - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc slots: - has_raw_value - was_generated_by @@ -19258,7 +19255,7 @@ classes: description: An optional string that specified the type of object. InstrumentValue: name: InstrumentValue - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: AttributeValue slots: - has_unit @@ -19267,7 +19264,7 @@ classes: QuantityValue: name: QuantityValue description: A simple quantity, e.g. 2cm - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mappings: - schema:QuantityValue is_a: AttributeValue @@ -19291,7 +19288,7 @@ classes: ImageValue: name: ImageValue description: An attribute value representing an image. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: AttributeValue slots: - url @@ -19303,7 +19300,7 @@ classes: todos: - add additional fields e.g for institution - deprecate "has_raw_value" in favor of "name" - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: AttributeValue slots: - orcid @@ -19340,7 +19337,7 @@ classes: is optional. MagBin: name: MagBin - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc slots: - bin_name - bin_quality @@ -19366,7 +19363,7 @@ classes: name: Instrument description: A material entity that is designed to perform a function in a scientific investigation, but is not a reagent[OBI]. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - device exact_mappings: @@ -19384,7 +19381,7 @@ classes: name: MetaboliteQuantification description: This is used to link a metabolomics analysis workflow to a specific metabolite - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc slots: - alternative_identifiers - highest_similarity_score @@ -19393,7 +19390,7 @@ classes: name: PeptideQuantification description: This is used to link a metaproteomics analysis workflow to a specific peptide sequence and related information - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc slots: - all_proteins - best_protein @@ -19405,7 +19402,7 @@ classes: name: ProteinQuantification description: This is used to link a metaproteomics analysis workflow to a specific protein - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc slot_usage: best_protein: name: best_protein @@ -19450,7 +19447,7 @@ classes: comments: - As with the parent OntologyClass, we will not assign an nmdc id pattern or typecode to this class. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://bioconductor.org/packages/devel/data/annotation/vignettes/metaboliteIDmapping/inst/doc/metaboliteIDmapping.html aliases: @@ -19490,40 +19487,40 @@ classes: notes: - we may include a more general gene product class in future to allow for ncRNA annotation - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc exact_mappings: - biolink:GeneProduct is_a: NamedThing TextValue: name: TextValue description: A basic string value - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: AttributeValue slots: - language UrlValue: name: UrlValue description: A value that is a string that conforms to URL syntax - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: AttributeValue TimestampValue: name: TimestampValue description: A value that is a timestamp. The range should be ISO-8601 notes: - 'removed the following slots: year, month, day' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: AttributeValue IntegerValue: name: IntegerValue description: A value that is an integer - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: AttributeValue slots: - has_numeric_value BooleanValue: name: BooleanValue description: A value that is a boolean - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: AttributeValue slots: - has_boolean_value @@ -19532,7 +19529,7 @@ classes: description: A controlled term or class from an ontology todos: - add fields for ontology, branch - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: AttributeValue slots: - term @@ -19542,7 +19539,7 @@ classes: of term with an id notes: - To be used for slots like env_broad_scale - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: ControlledTermValue slot_usage: term: @@ -19553,7 +19550,7 @@ classes: description: A normalized value for a location on the earth's surface notes: - 'what did ''to_str: {latitude} {longitude}'' mean?' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mappings: - schema:GeoCoordinates is_a: AttributeValue @@ -19573,7 +19570,7 @@ classes: Activity: name: Activity description: a provence-generating activity - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mappings: - prov:Activity slots: @@ -19597,7 +19594,7 @@ classes: DissolvingActivity: name: DissolvingActivity title: Dissolving activity - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - dissolution-activity slots: @@ -19622,7 +19619,7 @@ classes: LabDevice: name: LabDevice title: Lab device - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc slots: - device_type - activity_speed @@ -19631,14 +19628,14 @@ classes: MaterialContainer: name: MaterialContainer title: Material container - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc slots: - container_size - container_type MaterialSample: name: MaterialSample title: Material sample - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - Material entity is_a: NamedThing @@ -19653,7 +19650,7 @@ classes: MaterialSamplingActivity: name: MaterialSamplingActivity title: Material sampling activity - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - weighing-activity slots: @@ -19685,7 +19682,7 @@ classes: ReactionActivity: name: ReactionActivity title: Reaction activity - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - reaction-activity slots: @@ -19713,7 +19710,7 @@ classes: description: A feature localized to an interval along a genome comments: - corresponds to an entry in GFF3 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://github.com/The-Sequence-Ontology/Specifications/blob/master/gff3.md slot_usage: @@ -19775,7 +19772,7 @@ classes: to a functional unit of a genome (protein, ncRNA, complex). todos: - decide if this should be used for product naming - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - function - FunctionalAnnotation @@ -19788,7 +19785,7 @@ classes: - COG description: A pathway is a sequence of steps/reactions carried out by an organism or community of organisms - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - biological process - metabolic pathway @@ -19816,7 +19813,7 @@ classes: description: An individual biochemical transformation carried out by a functional unit of an organism, in which a collection of substrates are transformed into a collection of products. Can also represent transporters - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc exact_mappings: - biolink:MolecularActivity is_a: FunctionalAnnotationTerm @@ -19856,7 +19853,7 @@ classes: ReactionParticipant: name: ReactionParticipant description: Instances of this link a reaction to a chemical entity participant - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc slot_usage: chemical: name: chemical @@ -19877,7 +19874,7 @@ classes: description: A set of genes or gene products in which all members are orthologous notes: - KEGG.ORTHOLOGY prefix is used for KO numbers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc exact_mappings: - biolink:GeneFamily is_a: FunctionalAnnotationTerm @@ -19890,7 +19887,7 @@ classes: typically using HMM or Blast type methods notes: - move id slot usage patterns to has_function slot usage? - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://img.jgi.doe.gov/docs/functional-annotation.pdf - https://github.com/microbiomedata/mg_annotation/blob/master/functional-annotation.wdl diff --git a/project/nmdc_schema_generated.yaml b/project/nmdc_schema_generated.yaml index 07db5bbdef..2194aa261e 100644 --- a/project/nmdc_schema_generated.yaml +++ b/project/nmdc_schema_generated.yaml @@ -12,43 +12,61 @@ notes: need better understanding of id patterns (at least) - commented out several MIxS terms assigned to Biosample because the definitions of those terms were commented out in mixs.yaml dues to shared slot uris -id: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc -version: v7.6.1 +id: https://w3id.org/nmdc/nmdc +version: v7.6.2 license: https://creativecommons.org/publicdomain/zero/1.0/ prefixes: + EFO: + prefix_prefix: EFO + prefix_reference: http://www.ebi.ac.uk/efo/ + ISA: + prefix_prefix: ISA + prefix_reference: http://example.com/isa/ + MetaNetX: + prefix_prefix: MetaNetX + prefix_reference: http://example.com/metanetx/ + RetroRules: + prefix_prefix: RetroRules + prefix_reference: http://example.com/retrorules/ emsl.project: prefix_prefix: emsl.project - prefix_reference: 'https://bioregistry.io/reference/emsl.project:' + prefix_reference: 'https://bioregistry.io/emsl.project:' + generic: + prefix_prefix: generic + prefix_reference: https://example.com/generic/ gnps.task: prefix_prefix: gnps.task - prefix_reference: 'https://bioregistry.io/reference/gnps.task:' + prefix_reference: 'https://bioregistry.io/gnps.task:' + gtpo: + prefix_prefix: gtpo + prefix_reference: http://example.com/gtpo/ + igsn: + prefix_prefix: igsn + prefix_reference: https://app.geosamples.org/sample/igsn/ jgi.proposal: prefix_prefix: jgi.proposal - prefix_reference: 'https://bioregistry.io/reference/jgi.proposal:' + prefix_reference: 'https://bioregistry.io/jgi.proposal:' + jgi: + prefix_prefix: jgi + prefix_reference: http://example.com/jgi/ + linkml: + prefix_prefix: linkml + prefix_reference: https://w3id.org/linkml/ + mgnify.proj: + prefix_prefix: mgnify.proj + prefix_reference: 'https://identifiers.org/mgnify.proj:' neon.identifier: prefix_prefix: neon.identifier prefix_reference: http://example.org/neon/identifier/ neon.schema: prefix_prefix: neon.schema prefix_reference: http://example.org/neon/schema/ - generic: - prefix_prefix: generic - prefix_reference: https://example.com/generic/ - linkml: - prefix_prefix: linkml - prefix_reference: https://w3id.org/linkml/ nmdc: prefix_prefix: nmdc prefix_reference: https://w3id.org/nmdc/ - nmdc_yaml: - prefix_prefix: nmdc_yaml - prefix_reference: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/ skos: prefix_prefix: skos prefix_reference: http://www.w3.org/2004/02/skos/core# - igsn: - prefix_prefix: igsn - prefix_reference: https://app.geosamples.org/sample/igsn/ prov: prefix_prefix: prov prefix_reference: http://www.w3.org/ns/prov# @@ -61,27 +79,6 @@ prefixes: xsd: prefix_prefix: xsd prefix_reference: http://www.w3.org/2001/XMLSchema# - EFO: - prefix_prefix: EFO - prefix_reference: http://identifiers.org/efo/ - MetaNetX: - prefix_prefix: MetaNetX - prefix_reference: http://example.com/metanetx/ - ISA: - prefix_prefix: ISA - prefix_reference: http://example.com/isa/ - RetroRules: - prefix_prefix: RetroRules - prefix_reference: http://example.com/retrorules/ - gtpo: - prefix_prefix: gtpo - prefix_reference: http://example.com/gtpo/ - jgi: - prefix_prefix: jgi - prefix_reference: http://example.com/jgi/ - mgnify.proj: - prefix_prefix: mgnify.proj - prefix_reference: 'https://identifiers.org/mgnify.proj:' KEGG.COMPOUND: prefix_prefix: KEGG.COMPOUND prefix_reference: http://identifiers.org/kegg.compound/ @@ -129,10 +126,10 @@ prefixes: prefix_reference: https://raw.githubusercontent.com/microbiomedata/mixs/main/model/schema/ COG: prefix_prefix: COG - prefix_reference: 'https://bioregistry.io/reference/cog:' + prefix_reference: 'https://bioregistry.io/cog:' EC: prefix_prefix: EC - prefix_reference: 'https://bioregistry.io/reference/eccode:' + prefix_reference: 'https://bioregistry.io/eccode:' GO: prefix_prefix: GO prefix_reference: http://purl.obolibrary.org/obo/GO_ @@ -169,52 +166,52 @@ subsets: name: sample subset description: Subset consisting of entities linked to the processing of samples. Currently, this subset consists of study, omics process, and biosample. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc data object subset: name: data object subset description: Subset consisting of the data objects that either inputs or outputs of processes or workflows. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc workflow subset: name: workflow subset description: Subset consisting of just the workflow execution activities - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc environment: name: environment - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc investigation: name: investigation - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc nucleic acid sequence source: name: nucleic acid sequence source - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc sequencing: name: sequencing - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixs_environmental_triad: name: mixs_environmental_triad title: MIxS Environmental Triad - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixs extension: name: mixs extension - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc checklist: name: checklist description: A MIxS checklist. These can be combined with packages - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc package: name: package description: A MIxS package. These can be combined with checklists - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc checklist_package_combination: name: checklist_package_combination description: A combination of a checklist and a package - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc types: bytes: name: bytes description: An integer value that corresponds to a size in bytes - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - UO:0000233 base: int @@ -222,7 +219,7 @@ types: decimal degree: name: decimal degree description: A decimal degree expresses latitude or longitude as decimal fractions. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://en.wikipedia.org/wiki/Decimal_degrees base: float @@ -230,14 +227,14 @@ types: language code: name: language code description: A language code conforming to ISO_639-1 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://en.wikipedia.org/wiki/ISO_639-1 base: str uri: xsd:language unit: name: unit - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mappings: - qud:Unit - UO:0000000 @@ -246,7 +243,7 @@ types: external identifier: name: external identifier description: A CURIE representing an external identifier - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://microbiomedata.github.io/nmdc-schema/identifiers.html typeof: uriorcurie @@ -254,7 +251,7 @@ types: string: name: string description: A character string - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc exact_mappings: - schema:Text base: str @@ -262,7 +259,7 @@ types: integer: name: integer description: An integer - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc exact_mappings: - schema:Integer base: int @@ -270,7 +267,7 @@ types: boolean: name: boolean description: A binary (true or false) value - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc exact_mappings: - schema:Boolean base: Bool @@ -279,7 +276,7 @@ types: float: name: float description: A real number that conforms to the xsd:float specification - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc exact_mappings: - schema:Float base: float @@ -287,7 +284,7 @@ types: double: name: double description: A real number that conforms to the xsd:double specification - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc close_mappings: - schema:Float base: float @@ -296,7 +293,7 @@ types: name: decimal description: A real number with arbitrary precision that conforms to the xsd:decimal specification - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc broad_mappings: - schema:Number base: Decimal @@ -307,7 +304,7 @@ types: particular day notes: - URI is dateTime because OWL reasoners do not work with straight date or time - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc exact_mappings: - schema:Time base: XSDTime @@ -318,7 +315,7 @@ types: description: a date (year, month and day) in an idealized calendar notes: - URI is dateTime because OWL reasoners don't work with straight date or time - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc exact_mappings: - schema:Date base: XSDDate @@ -327,7 +324,7 @@ types: datetime: name: datetime description: The combination of a date and time - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc exact_mappings: - schema:DateTime base: XSDDateTime @@ -336,14 +333,14 @@ types: date_or_datetime: name: date_or_datetime description: Either a date or a datetime - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc base: str uri: linkml:DateOrDatetime repr: str uriorcurie: name: uriorcurie description: a URI or a CURIE - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc base: URIorCURIE uri: xsd:anyURI repr: str @@ -354,7 +351,7 @@ types: comments: - in RDF serializations this MUST be expanded to a URI - in non-RDF serializations MAY be serialized as the compact representation - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc base: Curie uri: xsd:string repr: str @@ -366,7 +363,7 @@ types: - in RDF serializations a slot with range of uri is treated as a literal or type xsd:anyURI unless it is an identifier or a reference to an identifier, in which case it is translated directly to a node - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc close_mappings: - schema:URL base: URI @@ -375,7 +372,7 @@ types: ncname: name: ncname description: Prefix part of CURIE - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc base: NCName uri: xsd:string repr: str @@ -384,21 +381,21 @@ types: description: A URI or CURIE that represents an object in the model. comments: - Used for inheritence and type checking - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc base: ElementIdentifier uri: shex:iri repr: str nodeidentifier: name: nodeidentifier description: A URI, CURIE or BNODE that represents a node in a model. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc base: NodeIdentifier uri: shex:nonLiteral repr: str enums: StatusEnum: name: StatusEnum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: pass: text: pass @@ -406,7 +403,7 @@ enums: text: fail ExtractionTargetEnum: name: ExtractionTargetEnum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: DNA: text: DNA @@ -418,7 +415,7 @@ enums: text: protein LibraryTypeEnum: name: LibraryTypeEnum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: DNA: text: DNA @@ -426,7 +423,7 @@ enums: text: RNA JgiContTypeEnum: name: JgiContTypeEnum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: plate: text: plate @@ -435,7 +432,7 @@ enums: YesNoEnum: name: YesNoEnum description: replaces DnaDnaseEnum and DnaseRnaEnum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: 'no': text: 'no' @@ -451,7 +448,7 @@ enums: - They might also be applicable to other classes - They are intended to enable metadata search and or filtering, for example in the NMDC data portal, https://data.microbiomedata.org/ - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - category tag permissible_values: @@ -478,7 +475,7 @@ enums: title: National Science Foundation's National Ecological Observatory Network file type enum: name: file type enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: Metagenome Raw Reads: text: Metagenome Raw Reads @@ -865,7 +862,7 @@ enums: name: credit enum comments: - credit enums come from https://casrai.org/credit/ - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: Conceptualization: text: Conceptualization @@ -923,7 +920,7 @@ enums: notes: - This will become the range of processing_institution.omics processing - use ROR meanings like https://ror.org/0168r3w48 for UCSD - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: UCSD: text: UCSD @@ -951,7 +948,7 @@ enums: ContainerTypeEnum: name: ContainerTypeEnum title: Container type enumeration - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: screw_top_conical: text: screw_top_conical @@ -961,7 +958,7 @@ enums: DeviceTypeEnum: name: DeviceTypeEnum title: Shaker type enumeration - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: orbital_shaker: text: orbital_shaker @@ -971,7 +968,7 @@ enums: title: Thermomixer SamplingMethodEnum: name: SamplingMethodEnum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: weighing: text: weighing @@ -979,7 +976,7 @@ enums: SolventEnum: name: SolventEnum title: Solvent enumeration - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: deionized_water: text: deionized_water @@ -996,7 +993,7 @@ enums: title: Chloroform analysis_type_enum: name: analysis_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: metabolomics: text: metabolomics @@ -1010,7 +1007,7 @@ enums: text: natural organic matter rna_sample_format_enum: name: rna_sample_format_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: 10 mM Tris-HCl: text: 10 mM Tris-HCl @@ -1038,7 +1035,7 @@ enums: text: Gentegra-RNA dna_sample_format_enum: name: dna_sample_format_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: 10 mM Tris-HCl: text: 10 mM Tris-HCl @@ -1066,27 +1063,87 @@ enums: text: Gentegra-RNA sample_type_enum: name: sample_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: soil: text: soil water_extract_soil: text: water_extract_soil - door_comp_type_enum: - name: door_comp_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + wall_loc_enum: + name: wall_loc_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - metal covered: - text: metal covered - revolving: - text: revolving - sliding: - text: sliding - telescopic: - text: telescopic + north: + text: north + south: + text: south + east: + text: east + west: + text: west + wall_texture_enum: + name: wall_texture_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + crows feet: + text: crows feet + crows-foot stomp: + text: crows-foot stomp + ? '' + : text: '' + double skip: + text: double skip + hawk and trowel: + text: hawk and trowel + knockdown: + text: knockdown + popcorn: + text: popcorn + orange peel: + text: orange peel + rosebud stomp: + text: rosebud stomp + Santa-Fe texture: + text: Santa-Fe texture + skip trowel: + text: skip trowel + smooth: + text: smooth + stomp knockdown: + text: stomp knockdown + swirl: + text: swirl + door_type_metal_enum: + name: door_type_metal_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + collapsible: + text: collapsible + corrugated steel: + text: corrugated steel + hollow: + text: hollow + rolling shutters: + text: rolling shutters + steel plate: + text: steel plate + water_feat_type_enum: + name: water_feat_type_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + fountain: + text: fountain + pool: + text: pool + standing feature: + text: standing feature + stream: + text: stream + waterfall: + text: waterfall organism_count_enum: name: organism_count_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: ATP: text: ATP @@ -1094,167 +1151,121 @@ enums: text: MPN other: text: other - light_type_enum: - name: light_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - natural light: - text: natural light - electric light: - text: electric light - desk lamp: - text: desk lamp - flourescent lights: - text: flourescent lights - none: - text: none - freq_clean_enum: - name: freq_clean_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + growth_habit_enum: + name: growth_habit_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Daily: - text: Daily - Weekly: - text: Weekly - Monthly: - text: Monthly - Quarterly: - text: Quarterly - Annually: - text: Annually - other: - text: other - substructure_type_enum: - name: substructure_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + erect: + text: erect + semi-erect: + text: semi-erect + spreading: + text: spreading + prostrate: + text: prostrate + room_samp_pos_enum: + name: room_samp_pos_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - crawlspace: - text: crawlspace - slab on grade: - text: slab on grade - basement: - text: basement - depos_env_enum: - name: depos_env_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + north corner: + text: north corner + south corner: + text: south corner + west corner: + text: west corner + east corner: + text: east corner + northeast corner: + text: northeast corner + northwest corner: + text: northwest corner + southeast corner: + text: southeast corner + southwest corner: + text: southwest corner + center: + text: center + rel_samp_loc_enum: + name: rel_samp_loc_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Continental - Alluvial: - text: Continental - Alluvial - Continental - Aeolian: - text: Continental - Aeolian - Continental - Fluvial: - text: Continental - Fluvial - Continental - Lacustrine: - text: Continental - Lacustrine - Transitional - Deltaic: - text: Transitional - Deltaic - Transitional - Tidal: - text: Transitional - Tidal - Transitional - Lagoonal: - text: Transitional - Lagoonal - Transitional - Beach: - text: Transitional - Beach - Transitional - Lake: - text: Transitional - Lake - Marine - Shallow: - text: Marine - Shallow - Marine - Deep: - text: Marine - Deep - Marine - Reef: - text: Marine - Reef - Other - Evaporite: - text: Other - Evaporite - Other - Glacial: - text: Other - Glacial - Other - Volcanic: - text: Other - Volcanic - other: - text: other - shading_device_cond_enum: - name: shading_device_cond_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + edge of car: + text: edge of car + center of car: + text: center of car + under a seat: + text: under a seat + wall_surf_treatment_enum: + name: wall_surf_treatment_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - damaged: - text: damaged - needs repair: - text: needs repair - new: - text: new - rupture: - text: rupture - visible wear: - text: visible wear - quad_pos_enum: - name: quad_pos_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - North side: - text: North side - West side: - text: West side - South side: - text: South side - East side: - text: East side - samp_floor_enum: - name: samp_floor_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - 1st floor: - text: 1st floor - 2nd floor: - text: 2nd floor - basement: - text: basement - lobby: - text: lobby - floor_cond_enum: - name: floor_cond_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + painted: + text: painted + wall paper: + text: wall paper + no treatment: + text: no treatment + paneling: + text: paneling + stucco: + text: stucco + fabric: + text: fabric + train_line_enum: + name: train_line_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - new: - text: new - visible wear: - text: visible wear - needs repair: - text: needs repair - damaged: - text: damaged - rupture: - text: rupture - specific_enum: - name: specific_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + red: + text: red + green: + text: green + orange: + text: orange + window_loc_enum: + name: window_loc_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - operation: - text: operation - as built: - text: as built - construction: - text: construction - bid: - text: bid - design: - text: design - photos: - text: photos - ceil_cond_enum: - name: ceil_cond_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + north: + text: north + south: + text: south + east: + text: east + west: + text: west + ceil_texture_enum: + name: ceil_texture_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - new: - text: new - visible wear: - text: visible wear - needs repair: - text: needs repair - damaged: - text: damaged - rupture: - text: rupture + crows feet: + text: crows feet + crows-foot stomp: + text: crows-foot stomp + double skip: + text: double skip + hawk and trowel: + text: hawk and trowel + knockdown: + text: knockdown + popcorn: + text: popcorn + orange peel: + text: orange peel + rosebud stomp: + text: rosebud stomp + Santa-Fe texture: + text: Santa-Fe texture + skip trowel: + text: skip trowel + smooth: + text: smooth + stomp knockdown: + text: stomp knockdown + swirl: + text: swirl oxy_stat_samp_enum: name: oxy_stat_samp_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: aerobic: text: aerobic @@ -1262,101 +1273,115 @@ enums: text: anaerobic other: text: other - shading_device_type_enum: - name: shading_device_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + plant_sex_enum: + name: plant_sex_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - bahama shutters: - text: bahama shutters - exterior roll blind: - text: exterior roll blind - gambrel awning: - text: gambrel awning - hood awning: - text: hood awning - porchroller awning: - text: porchroller awning - sarasota shutters: - text: sarasota shutters - slatted aluminum: - text: slatted aluminum - solid aluminum awning: - text: solid aluminum awning - sun screen: - text: sun screen - tree: - text: tree - trellis: - text: trellis - venetian awning: - text: venetian awning - vis_media_enum: - name: vis_media_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + Androdioecious: + text: Androdioecious + Androecious: + text: Androecious + Androgynous: + text: Androgynous + Androgynomonoecious: + text: Androgynomonoecious + Andromonoecious: + text: Andromonoecious + Bisexual: + text: Bisexual + Dichogamous: + text: Dichogamous + Diclinous: + text: Diclinous + Dioecious: + text: Dioecious + Gynodioecious: + text: Gynodioecious + Gynoecious: + text: Gynoecious + Gynomonoecious: + text: Gynomonoecious + Hermaphroditic: + text: Hermaphroditic + Imperfect: + text: Imperfect + Monoclinous: + text: Monoclinous + Monoecious: + text: Monoecious + Perfect: + text: Perfect + Polygamodioecious: + text: Polygamodioecious + Polygamomonoecious: + text: Polygamomonoecious + Polygamous: + text: Polygamous + Protandrous: + text: Protandrous + Protogynous: + text: Protogynous + Subandroecious: + text: Subandroecious + Subdioecious: + text: Subdioecious + Subgynoecious: + text: Subgynoecious + Synoecious: + text: Synoecious + Trimonoecious: + text: Trimonoecious + Trioecious: + text: Trioecious + Unisexual: + text: Unisexual + ext_wall_orient_enum: + name: ext_wall_orient_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - photos: - text: photos - videos: - text: videos - commonly of the building: - text: commonly of the building - site context (adjacent buildings, vegetation, terrain, streets): - text: site context (adjacent buildings, vegetation, terrain, streets) - interiors: - text: interiors - equipment: - text: equipment - 3D scans: - text: 3D scans - drawings_enum: - name: drawings_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + north: + text: north + south: + text: south + east: + text: east + west: + text: west + northeast: + text: northeast + southeast: + text: southeast + southwest: + text: southwest + northwest: + text: northwest + furniture_enum: + name: furniture_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - operation: - text: operation - as built: - text: as built - construction: - text: construction - bid: - text: bid - design: - text: design - building navigation map: - text: building navigation map - diagram: - text: diagram - sketch: - text: sketch - window_cover_enum: - name: window_cover_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - blinds: - text: blinds - curtains: - text: curtains - none: - text: none - hc_produced_enum: - name: hc_produced_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + cabinet: + text: cabinet + chair: + text: chair + desks: + text: desks + sr_lithology_enum: + name: sr_lithology_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Oil: - text: Oil - Gas-Condensate: - text: Gas-Condensate - Gas: - text: Gas - Bitumen: - text: Bitumen - Coalbed Methane: - text: Coalbed Methane + Clastic: + text: Clastic + Carbonate: + text: Carbonate + Coal: + text: Coal + Biosilicieous: + text: Biosilicieous other: text: other train_stop_loc_enum: name: train_stop_loc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: end: text: end @@ -1364,207 +1389,171 @@ enums: text: mid downtown: text: downtown - build_occup_type_enum: - name: build_occup_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - office: - text: office - market: - text: market - restaurant: - text: restaurant - residence: - text: residence - school: - text: school - residential: - text: residential - commercial: - text: commercial - low rise: - text: low rise - high rise: - text: high rise - wood framed: - text: wood framed - health care: - text: health care - airport: - text: airport - sports complex: - text: sports complex - rel_samp_loc_enum: - name: rel_samp_loc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + substructure_type_enum: + name: substructure_type_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - edge of car: - text: edge of car - center of car: - text: center of car - under a seat: - text: under a seat - occup_document_enum: - name: occup_document_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + crawlspace: + text: crawlspace + slab on grade: + text: slab on grade + basement: + text: basement + ceil_finish_mat_enum: + name: ceil_finish_mat_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - automated count: - text: automated count - estimate: - text: estimate - manual count: - text: manual count - videos: - text: videos - weekday_enum: - name: weekday_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + drywall: + text: drywall + mineral fibre: + text: mineral fibre + tiles: + text: tiles + PVC: + text: PVC + plasterboard: + text: plasterboard + metal: + text: metal + fiberglass: + text: fiberglass + stucco: + text: stucco + mineral wool/calcium silicate: + text: mineral wool/calcium silicate + wood: + text: wood + door_type_enum: + name: door_type_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Monday: - text: Monday - Tuesday: - text: Tuesday - Wednesday: - text: Wednesday - Thursday: - text: Thursday - Friday: - text: Friday - Saturday: - text: Saturday - Sunday: - text: Sunday - soil_horizon_enum: - name: soil_horizon_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + composite: + text: composite + metal: + text: metal + wooden: + text: wooden + biol_stat_enum: + name: biol_stat_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - O horizon: - text: O horizon - A horizon: - text: A horizon - E horizon: - text: E horizon - B horizon: - text: B horizon - C horizon: - text: C horizon - R layer: - text: R layer - Permafrost: - text: Permafrost - M horizon: - text: M horizon - room_loc_enum: - name: room_loc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + wild: + text: wild + natural: + text: natural + semi-natural: + text: semi-natural + inbred line: + text: inbred line + breeder's line: + text: breeder's line + hybrid: + text: hybrid + clonal selection: + text: clonal selection + mutant: + text: mutant + window_vert_pos_enum: + name: window_vert_pos_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - corner room: - text: corner room - interior room: - text: interior room - exterior wall: - text: exterior wall - indoor_surf_enum: - name: indoor_surf_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + bottom: + text: bottom + middle: + text: middle + top: + text: top + low: + text: low + high: + text: high + tillage_enum: + name: tillage_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - cabinet: - text: cabinet - ceiling: - text: ceiling - counter top: - text: counter top - door: - text: door - shelving: - text: shelving - vent cover: - text: vent cover - window: - text: window - wall: - text: wall - door_type_wood_enum: - name: door_type_wood_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + drill: + text: drill + cutting disc: + text: cutting disc + ridge till: + text: ridge till + strip tillage: + text: strip tillage + zonal tillage: + text: zonal tillage + chisel: + text: chisel + tined: + text: tined + mouldboard: + text: mouldboard + disc plough: + text: disc plough + build_docs_enum: + name: build_docs_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - bettened and ledged: - text: bettened and ledged - battened: - text: battened - ledged and braced: - text: ledged and braced - ledged and framed: - text: ledged and framed - ledged, braced and frame: - text: ledged, braced and frame - framed and paneled: - text: framed and paneled - glashed or sash: - text: glashed or sash - flush: - text: flush - louvered: - text: louvered - wire gauged: - text: wire gauged - floor_struc_enum: - name: floor_struc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - balcony: - text: balcony - floating floor: - text: floating floor - glass floor: - text: glass floor - raised floor: - text: raised floor - sprung floor: - text: sprung floor - wood-framed: - text: wood-framed - concrete: - text: concrete - door_type_metal_enum: - name: door_type_metal_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + building information model: + text: building information model + commissioning report: + text: commissioning report + complaint logs: + text: complaint logs + contract administration: + text: contract administration + cost estimate: + text: cost estimate + janitorial schedules or logs: + text: janitorial schedules or logs + maintenance plans: + text: maintenance plans + schedule: + text: schedule + sections: + text: sections + shop drawings: + text: shop drawings + submittals: + text: submittals + ventilation system: + text: ventilation system + windows: + text: windows + window_type_enum: + name: window_type_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - collapsible: - text: collapsible - corrugated steel: - text: corrugated steel - hollow: - text: hollow - rolling shutters: - text: rolling shutters - steel plate: - text: steel plate - samp_weather_enum: - name: samp_weather_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + single-hung sash window: + text: single-hung sash window + horizontal sash window: + text: horizontal sash window + fixed window: + text: fixed window + mech_struc_enum: + name: mech_struc_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - clear sky: - text: clear sky - cloudy: - text: cloudy - foggy: - text: foggy - hail: - text: hail - rain: - text: rain - snow: - text: snow - sleet: - text: sleet - sunny: - text: sunny - windy: - text: windy - ext_window_orient_enum: - name: ext_window_orient_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + subway: + text: subway + coach: + text: coach + carriage: + text: carriage + elevator: + text: elevator + escalator: + text: escalator + boat: + text: boat + train: + text: train + car: + text: car + bus: + text: bus + door_loc_enum: + name: door_loc_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: north: text: north @@ -1574,17 +1563,53 @@ enums: text: east west: text: west - northeast: - text: northeast - southeast: - text: southeast - southwest: - text: southwest - northwest: - text: northwest + shading_device_cond_enum: + name: shading_device_cond_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + damaged: + text: damaged + needs repair: + text: needs repair + new: + text: new + rupture: + text: rupture + visible wear: + text: visible wear + samp_floor_enum: + name: samp_floor_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + 1st floor: + text: 1st floor + 2nd floor: + text: 2nd floor + basement: + text: basement + lobby: + text: lobby + samp_collect_point_enum: + name: samp_collect_point_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + well: + text: well + test well: + text: test well + drilling rig: + text: drilling rig + wellhead: + text: wellhead + separator: + text: separator + storage tank: + text: storage tank + other: + text: other sediment_type_enum: name: sediment_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: biogenous: text: biogenous @@ -1594,9 +1619,83 @@ enums: text: hydrogenous lithogenous: text: lithogenous - room_condt_enum: - name: room_condt_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + indoor_space_enum: + name: indoor_space_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + bedroom: + text: bedroom + office: + text: office + bathroom: + text: bathroom + foyer: + text: foyer + kitchen: + text: kitchen + locker room: + text: locker room + hallway: + text: hallway + elevator: + text: elevator + handidness_enum: + name: handidness_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + ambidexterity: + text: ambidexterity + left handedness: + text: left handedness + mixed-handedness: + text: mixed-handedness + right handedness: + text: right handedness + door_type_wood_enum: + name: door_type_wood_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + bettened and ledged: + text: bettened and ledged + battened: + text: battened + ledged and braced: + text: ledged and braced + ledged and framed: + text: ledged and framed + ledged, braced and frame: + text: ledged, braced and frame + framed and paneled: + text: framed and paneled + glashed or sash: + text: glashed or sash + flush: + text: flush + louvered: + text: louvered + wire gauged: + text: wire gauged + floor_struc_enum: + name: floor_struc_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + balcony: + text: balcony + floating floor: + text: floating floor + glass floor: + text: glass floor + raised floor: + text: raised floor + sprung floor: + text: sprung floor + wood-framed: + text: wood-framed + concrete: + text: concrete + floor_cond_enum: + name: floor_cond_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: new: text: new @@ -1608,111 +1707,113 @@ enums: text: damaged rupture: text: rupture - visible signs of mold/mildew: - text: visible signs of mold/mildew - sr_dep_env_enum: - name: sr_dep_env_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - Lacustine: - text: Lacustine - Fluvioldeltaic: - text: Fluvioldeltaic - Fluviomarine: - text: Fluviomarine - Marine: - text: Marine - other: - text: other - wall_surf_treatment_enum: - name: wall_surf_treatment_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + drawings_enum: + name: drawings_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - painted: - text: painted - wall paper: - text: wall paper - no treatment: - text: no treatment - paneling: - text: paneling - stucco: - text: stucco - fabric: - text: fabric - water_feat_type_enum: - name: water_feat_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + operation: + text: operation + as built: + text: as built + construction: + text: construction + bid: + text: bid + design: + text: design + building navigation map: + text: building navigation map + diagram: + text: diagram + sketch: + text: sketch + room_condt_enum: + name: room_condt_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - fountain: - text: fountain - pool: - text: pool - standing feature: - text: standing feature - stream: - text: stream - waterfall: - text: waterfall - window_mat_enum: - name: window_mat_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + new: + text: new + visible wear: + text: visible wear + needs repair: + text: needs repair + damaged: + text: damaged + rupture: + text: rupture + visible signs of mold/mildew: + text: visible signs of mold/mildew + hc_produced_enum: + name: hc_produced_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - clad: - text: clad - fiberglass: - text: fiberglass + Oil: + text: Oil + Gas-Condensate: + text: Gas-Condensate + Gas: + text: Gas + Bitumen: + text: Bitumen + Coalbed Methane: + text: Coalbed Methane + other: + text: other + surf_material_enum: + name: surf_material_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + adobe: + text: adobe + carpet: + text: carpet + cinder blocks: + text: cinder blocks + concrete: + text: concrete + hay bales: + text: hay bales + glass: + text: glass metal: text: metal + paint: + text: paint + plastic: + text: plastic + stainless steel: + text: stainless steel + stone: + text: stone + stucco: + text: stucco + tile: + text: tile vinyl: text: vinyl wood: text: wood - furniture_enum: - name: furniture_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - cabinet: - text: cabinet - chair: - text: chair - desks: - text: desks - building_setting_enum: - name: building_setting_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - urban: - text: urban - suburban: - text: suburban - exurban: - text: exurban - rural: - text: rural - door_direct_enum: - name: door_direct_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - inward: - text: inward - outward: - text: outward - sideways: - text: sideways - window_horiz_pos_enum: - name: window_horiz_pos_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + vis_media_enum: + name: vis_media_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - left: - text: left - middle: - text: middle - right: - text: right + photos: + text: photos + videos: + text: videos + commonly of the building: + text: commonly of the building + site context (adjacent buildings, vegetation, terrain, streets): + text: site context (adjacent buildings, vegetation, terrain, streets) + interiors: + text: interiors + equipment: + text: equipment + 3D scans: + text: 3D scans samp_dis_stage_enum: name: samp_dis_stage_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: dissemination: text: dissemination @@ -1726,496 +1827,157 @@ enums: text: penetration other: text: other - door_cond_enum: - name: door_cond_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + profile_position_enum: + name: profile_position_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - damaged: - text: damaged - needs repair: - text: needs repair - new: - text: new - rupture: - text: rupture - visible wear: - text: visible wear - filter_type_enum: - name: filter_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + summit: + text: summit + shoulder: + text: shoulder + backslope: + text: backslope + footslope: + text: footslope + toeslope: + text: toeslope + building_setting_enum: + name: building_setting_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - particulate air filter: - text: particulate air filter - chemical air filter: - text: chemical air filter - low-MERV pleated media: - text: low-MERV pleated media - HEPA: - text: HEPA - electrostatic: - text: electrostatic - gas-phase or ultraviolet air treatments: - text: gas-phase or ultraviolet air treatments - window_type_enum: - name: window_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + urban: + text: urban + suburban: + text: suburban + exurban: + text: exurban + rural: + text: rural + sr_geol_age_enum: + name: sr_geol_age_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - single-hung sash window: - text: single-hung sash window - horizontal sash window: - text: horizontal sash window - fixed window: - text: fixed window - build_docs_enum: - name: build_docs_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + Archean: + text: Archean + Cambrian: + text: Cambrian + Carboniferous: + text: Carboniferous + Cenozoic: + text: Cenozoic + Cretaceous: + text: Cretaceous + Devonian: + text: Devonian + Jurassic: + text: Jurassic + Mesozoic: + text: Mesozoic + Neogene: + text: Neogene + Ordovician: + text: Ordovician + Paleogene: + text: Paleogene + Paleozoic: + text: Paleozoic + Permian: + text: Permian + Precambrian: + text: Precambrian + Proterozoic: + text: Proterozoic + Silurian: + text: Silurian + Triassic: + text: Triassic + other: + text: other + samp_capt_status_enum: + name: samp_capt_status_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - building information model: - text: building information model - commissioning report: - text: commissioning report - complaint logs: - text: complaint logs - contract administration: - text: contract administration - cost estimate: - text: cost estimate - janitorial schedules or logs: - text: janitorial schedules or logs - maintenance plans: - text: maintenance plans - schedule: - text: schedule - sections: - text: sections - shop drawings: - text: shop drawings - submittals: - text: submittals - ventilation system: - text: ventilation system - windows: - text: windows - cur_land_use_enum: - name: cur_land_use_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - badlands: - text: badlands - cities: - text: cities - conifers: - text: conifers - annotations: - originally: - tag: originally - value: conifers (e.g. pine,spruce,fir,cypress) - examples: - - value: cypress - - value: fir - - value: pine - - value: spruce - crop trees: - text: crop trees - annotations: - originally: - tag: originally - value: crop trees (nuts,fruit,christmas trees,nursery trees) - examples: - - value: christmas trees - - value: fruit - - value: nursery trees - - value: nuts - farmstead: - text: farmstead - gravel: - text: gravel - hardwoods: - text: hardwoods - annotations: - originally: - tag: originally - value: hardwoods (e.g. oak,hickory,elm,aspen) - examples: - - value: aspen - - value: elm - - value: hickory - - value: oak - hayland: - text: hayland - horticultural plants: - text: horticultural plants - annotations: - originally: - tag: originally - value: horticultural plants (e.g. tulips) - examples: - - value: tulips - industrial areas: - text: industrial areas - intermixed hardwood and conifers: - text: intermixed hardwood and conifers - marshlands: - text: marshlands - annotations: - originally: - tag: originally - value: marshlands (grass,sedges,rushes) - examples: - - value: grass - - value: rushes - - value: sedgees - meadows: - text: meadows - annotations: - originally: - tag: originally - value: meadows (grasses,alfalfa,fescue,bromegrass,timothy) - examples: - - value: alfalfa - - value: bromegrass - - value: fescue - - value: grasses - - value: timothy - mines/quarries: - text: mines/quarries - mudflats: - text: mudflats - oil waste areas: - text: oil waste areas - pastureland: - text: pastureland - annotations: - originally: - tag: originally - value: pastureland (grasslands used for livestock grazing) - comments: - - grasslands used for livestock grazing - permanent snow or ice: - text: permanent snow or ice - rainforest: - text: rainforest - annotations: - originally: - tag: originally - value: rainforest (evergreen forest receiving greater than 406 cm annual - rainfall) - comments: - - evergreen forest receiving greater than 406 cm annual rainfall - rangeland: - text: rangeland - roads/railroads: - text: roads/railroads - rock: - text: rock - row crops: - text: row crops - saline seeps: - text: saline seeps - salt flats: - text: salt flats - sand: - text: sand - shrub crops: - text: shrub crops - annotations: - originally: - tag: originally - value: shrub crops (blueberries,nursery ornamentals,filberts) - examples: - - value: blueberries - - value: filberts - - value: nursery ornamentals - shrub land: - text: shrub land - annotations: - originally: - tag: originally - value: shrub land (e.g. mesquite,sage-brush,creosote bush,shrub oak,eucalyptus) - examples: - - value: creosote bush - - value: eucalyptus - - value: mesquite - - value: sage-brush - - value: shrub oak - small grains: - text: small grains - successional shrub land: - text: successional shrub land - annotations: - originally: - tag: originally - value: successional shrub land (tree saplings,hazels,sumacs,chokecherry,shrub - dogwoods,blackberries) - examples: - - value: blackberries - - value: chokecherry - - value: hazels - - value: shrub dogwoods - - value: sumacs - - value: tree saplings - swamp: - text: swamp - annotations: - originally: - tag: originally - value: swamp (permanent or semi-permanent water body dominated by woody - plants) - comments: - - permanent or semi-permanent water body dominated by woody plants - tropical: - text: tropical - annotations: - originally: - tag: originally - value: tropical (e.g. mangrove,palms) - examples: - - value: mangrove - - value: palms - tundra: - text: tundra - annotations: - originally: - tag: originally - value: tundra (mosses,lichens) - examples: - - value: lichens - - value: mosses - vegetable crops: - text: vegetable crops - vine crops: - text: vine crops - annotations: - originally: - tag: originally - value: vine crops (grapes) - examples: - - value: grapes - host_sex_enum: - name: host_sex_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - female: - text: female - hermaphrodite: - text: hermaphrodite - male: - text: male - neuter: - text: neuter - samp_collect_point_enum: - name: samp_collect_point_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - well: - text: well - test well: - text: test well - drilling rig: - text: drilling rig - wellhead: - text: wellhead - separator: - text: separator - storage tank: - text: storage tank - other: - text: other - train_line_enum: - name: train_line_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - red: - text: red - green: - text: green - orange: - text: orange - mech_struc_enum: - name: mech_struc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - subway: - text: subway - coach: - text: coach - carriage: - text: carriage - elevator: - text: elevator - escalator: - text: escalator - boat: - text: boat - train: - text: train - car: - text: car - bus: - text: bus - lithology_enum: - name: lithology_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - Basement: - text: Basement - Chalk: - text: Chalk - Chert: - text: Chert - Coal: - text: Coal - Conglomerate: - text: Conglomerate - Diatomite: - text: Diatomite - Dolomite: - text: Dolomite - Limestone: - text: Limestone - Sandstone: - text: Sandstone - Shale: - text: Shale - Siltstone: - text: Siltstone - Volcanic: - text: Volcanic + active surveillance in response to an outbreak: + text: active surveillance in response to an outbreak + active surveillance not initiated by an outbreak: + text: active surveillance not initiated by an outbreak + farm sample: + text: farm sample + market sample: + text: market sample other: text: other - door_mat_enum: - name: door_mat_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - aluminum: - text: aluminum - cellular PVC: - text: cellular PVC - engineered plastic: - text: engineered plastic - fiberboard: - text: fiberboard - fiberglass: - text: fiberglass - metal: - text: metal - thermoplastic alloy: - text: thermoplastic alloy - vinyl: - text: vinyl - wood: - text: wood - wood/plastic composite: - text: wood/plastic composite - floor_water_mold_enum: - name: floor_water_mold_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - mold odor: - text: mold odor - wet floor: - text: wet floor - water stains: - text: water stains - wall discoloration: - text: wall discoloration - floor discoloration: - text: floor discoloration - ceiling discoloration: - text: ceiling discoloration - peeling paint or wallpaper: - text: peeling paint or wallpaper - bulging walls: - text: bulging walls - condensation: - text: condensation - surf_air_cont_enum: - name: surf_air_cont_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + soil_horizon_enum: + name: soil_horizon_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - dust: - text: dust - organic matter: - text: organic matter - particulate matter: - text: particulate matter - volatile organic compounds: - text: volatile organic compounds - biological contaminants: - text: biological contaminants - radon: - text: radon - nutrients: - text: nutrients - biocides: - text: biocides - ceil_finish_mat_enum: - name: ceil_finish_mat_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + O horizon: + text: O horizon + A horizon: + text: A horizon + E horizon: + text: E horizon + B horizon: + text: B horizon + C horizon: + text: C horizon + R layer: + text: R layer + Permafrost: + text: Permafrost + M horizon: + text: M horizon + ext_window_orient_enum: + name: ext_window_orient_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - drywall: - text: drywall - mineral fibre: - text: mineral fibre - tiles: - text: tiles - PVC: - text: PVC - plasterboard: - text: plasterboard - metal: - text: metal - fiberglass: - text: fiberglass - stucco: - text: stucco - mineral wool/calcium silicate: - text: mineral wool/calcium silicate - wood: - text: wood - samp_md_enum: - name: samp_md_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + north: + text: north + south: + text: south + east: + text: east + west: + text: west + northeast: + text: northeast + southeast: + text: southeast + southwest: + text: southwest + northwest: + text: northwest + heat_deliv_loc_enum: + name: heat_deliv_loc_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - DF: - text: DF - RT: - text: RT - KB: - text: KB - MSL: - text: MSL - other: - text: other - wall_finish_mat_enum: - name: wall_finish_mat_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + north: + text: north + south: + text: south + east: + text: east + west: + text: west + door_move_enum: + name: door_move_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - plaster: - text: plaster - gypsum plaster: - text: gypsum plaster - veneer plaster: - text: veneer plaster - gypsum board: - text: gypsum board - tile: - text: tile - terrazzo: - text: terrazzo - stone facing: - text: stone facing - acoustical treatment: - text: acoustical treatment - wood: - text: wood - metal: - text: metal - masonry: - text: masonry + collapsible: + text: collapsible + folding: + text: folding + revolving: + text: revolving + rolling shutter: + text: rolling shutter + sliding: + text: sliding + swinging: + text: swinging floor_finish_mat_enum: name: floor_finish_mat_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: tile: text: tile @@ -2253,87 +2015,179 @@ enums: text: paint none or unfinished: text: none or unfinished - sr_kerog_type_enum: - name: sr_kerog_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + tidal_stage_enum: + name: tidal_stage_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Type I: - text: Type I - Type II: - text: Type II - Type III: - text: Type III - Type IV: - text: Type IV + low tide: + text: low tide + ebb tide: + text: ebb tide + flood tide: + text: flood tide + high tide: + text: high tide + train_stat_loc_enum: + name: train_stat_loc_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + south station above ground: + text: south station above ground + south station underground: + text: south station underground + south station amtrak: + text: south station amtrak + forest hills: + text: forest hills + riverside: + text: riverside + lithology_enum: + name: lithology_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + Basement: + text: Basement + Chalk: + text: Chalk + Chert: + text: Chert + Coal: + text: Coal + Conglomerate: + text: Conglomerate + Diatomite: + text: Diatomite + Dolomite: + text: Dolomite + Limestone: + text: Limestone + Sandstone: + text: Sandstone + Shale: + text: Shale + Siltstone: + text: Siltstone + Volcanic: + text: Volcanic other: text: other - biotic_relationship_enum: - name: biotic_relationship_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + hcr_geol_age_enum: + name: hcr_geol_age_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - free living: - text: free living - parasite: - text: parasite - commensal: - text: commensal - symbiont: - text: symbiont - room_connected_enum: - name: room_connected_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + Archean: + text: Archean + Cambrian: + text: Cambrian + Carboniferous: + text: Carboniferous + Cenozoic: + text: Cenozoic + Cretaceous: + text: Cretaceous + Devonian: + text: Devonian + Jurassic: + text: Jurassic + Mesozoic: + text: Mesozoic + Neogene: + text: Neogene + Ordovician: + text: Ordovician + Paleogene: + text: Paleogene + Paleozoic: + text: Paleozoic + Permian: + text: Permian + Precambrian: + text: Precambrian + Proterozoic: + text: Proterozoic + Silurian: + text: Silurian + Triassic: + text: Triassic + other: + text: other + hcr_enum: + name: hcr_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + Oil Reservoir: + text: Oil Reservoir + Gas Reservoir: + text: Gas Reservoir + Oil Sand: + text: Oil Sand + Coalbed: + text: Coalbed + Shale: + text: Shale + Tight Oil Reservoir: + text: Tight Oil Reservoir + Tight Gas Reservoir: + text: Tight Gas Reservoir + other: + text: other + build_occup_type_enum: + name: build_occup_type_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - attic: - text: attic - bathroom: - text: bathroom - closet: - text: closet - conference room: - text: conference room - elevator: - text: elevator - examining room: - text: examining room - hallway: - text: hallway - kitchen: - text: kitchen - mail room: - text: mail room office: text: office - stairwell: - text: stairwell - growth_habit_enum: - name: growth_habit_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + market: + text: market + restaurant: + text: restaurant + residence: + text: residence + school: + text: school + residential: + text: residential + commercial: + text: commercial + low rise: + text: low rise + high rise: + text: high rise + wood framed: + text: wood framed + health care: + text: health care + airport: + text: airport + sports complex: + text: sports complex + window_cover_enum: + name: window_cover_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - erect: - text: erect - semi-erect: - text: semi-erect - spreading: - text: spreading - prostrate: - text: prostrate - samp_subtype_enum: - name: samp_subtype_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + blinds: + text: blinds + curtains: + text: curtains + none: + text: none + ceil_cond_enum: + name: ceil_cond_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - oil phase: - text: oil phase - water phase: - text: water phase - biofilm: - text: biofilm - not applicable: - text: not applicable - other: - text: other + new: + text: new + visible wear: + text: visible wear + needs repair: + text: needs repair + damaged: + text: damaged + rupture: + text: rupture plant_growth_med_enum: name: plant_growth_med_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: other artificial liquid medium: text: other artificial liquid medium @@ -2353,445 +2207,231 @@ enums: text: vermiculite water: text: water - ext_wall_orient_enum: - name: ext_wall_orient_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - northeast: - text: northeast - southeast: - text: southeast - southwest: - text: southwest - northwest: - text: northwest - door_move_enum: - name: door_move_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - collapsible: - text: collapsible - folding: - text: folding - revolving: - text: revolving - rolling shutter: - text: rolling shutter - sliding: - text: sliding - swinging: - text: swinging - ceil_type_enum: - name: ceil_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - cathedral: - text: cathedral - dropped: - text: dropped - concave: - text: concave - barrel-shaped: - text: barrel-shaped - coffered: - text: coffered - cove: - text: cove - stretched: - text: stretched - heat_cool_type_enum: - name: heat_cool_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - radiant system: - text: radiant system - heat pump: - text: heat pump - forced air system: - text: forced air system - steam forced heat: - text: steam forced heat - wood stove: - text: wood stove - window_vert_pos_enum: - name: window_vert_pos_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - bottom: - text: bottom - middle: - text: middle - top: - text: top - low: - text: low - high: - text: high - indoor_space_enum: - name: indoor_space_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - bedroom: - text: bedroom - office: - text: office - bathroom: - text: bathroom - foyer: - text: foyer - kitchen: - text: kitchen - locker room: - text: locker room - hallway: - text: hallway - elevator: - text: elevator - tidal_stage_enum: - name: tidal_stage_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - low tide: - text: low tide - ebb tide: - text: ebb tide - flood tide: - text: flood tide - high tide: - text: high tide - wall_texture_enum: - name: wall_texture_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - crows feet: - text: crows feet - crows-foot stomp: - text: crows-foot stomp - ? '' - : text: '' - double skip: - text: double skip - hawk and trowel: - text: hawk and trowel - knockdown: - text: knockdown - popcorn: - text: popcorn - orange peel: - text: orange peel - rosebud stomp: - text: rosebud stomp - Santa-Fe texture: - text: Santa-Fe texture - skip trowel: - text: skip trowel - smooth: - text: smooth - stomp knockdown: - text: stomp knockdown - swirl: - text: swirl - door_type_enum: - name: door_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - composite: - text: composite - metal: - text: metal - wooden: - text: wooden - int_wall_cond_enum: - name: int_wall_cond_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + samp_md_enum: + name: samp_md_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - new: - text: new - visible wear: - text: visible wear - needs repair: - text: needs repair - damaged: - text: damaged - rupture: - text: rupture - profile_position_enum: - name: profile_position_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + DF: + text: DF + RT: + text: RT + KB: + text: KB + MSL: + text: MSL + other: + text: other + door_direct_enum: + name: door_direct_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - summit: - text: summit - shoulder: - text: shoulder - backslope: - text: backslope - footslope: - text: footslope - toeslope: - text: toeslope - arch_struc_enum: - name: arch_struc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + inward: + text: inward + outward: + text: outward + sideways: + text: sideways + sr_dep_env_enum: + name: sr_dep_env_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - building: - text: building - shed: - text: shed - home: - text: home - surf_material_enum: - name: surf_material_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + Lacustine: + text: Lacustine + Fluvioldeltaic: + text: Fluvioldeltaic + Fluviomarine: + text: Fluviomarine + Marine: + text: Marine + other: + text: other + window_mat_enum: + name: window_mat_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - adobe: - text: adobe - carpet: - text: carpet - cinder blocks: - text: cinder blocks - concrete: - text: concrete - hay bales: - text: hay bales - glass: - text: glass + clad: + text: clad + fiberglass: + text: fiberglass metal: text: metal - paint: - text: paint - plastic: - text: plastic - stainless steel: - text: stainless steel - stone: - text: stone - stucco: - text: stucco - tile: - text: tile vinyl: text: vinyl wood: text: wood - season_use_enum: - name: season_use_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - Spring: - text: Spring - Summer: - text: Summer - Fall: - text: Fall - Winter: - text: Winter - drainage_class_enum: - name: drainage_class_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - very poorly: - text: very poorly - poorly: - text: poorly - somewhat poorly: - text: somewhat poorly - moderately well: - text: moderately well - well: - text: well - excessively drained: - text: excessively drained - wall_loc_enum: - name: wall_loc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - biol_stat_enum: - name: biol_stat_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - wild: - text: wild - natural: - text: natural - semi-natural: - text: semi-natural - inbred line: - text: inbred line - breeder's line: - text: breeder's line - hybrid: - text: hybrid - clonal selection: - text: clonal selection - mutant: - text: mutant - sr_lithology_enum: - name: sr_lithology_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + sr_kerog_type_enum: + name: sr_kerog_type_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Clastic: - text: Clastic - Carbonate: - text: Carbonate - Coal: - text: Coal - Biosilicieous: - text: Biosilicieous + Type I: + text: Type I + Type II: + text: Type II + Type III: + text: Type III + Type IV: + text: Type IV other: text: other - hcr_geol_age_enum: - name: hcr_geol_age_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + window_horiz_pos_enum: + name: window_horiz_pos_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Archean: - text: Archean - Cambrian: - text: Cambrian - Carboniferous: - text: Carboniferous - Cenozoic: - text: Cenozoic - Cretaceous: - text: Cretaceous - Devonian: - text: Devonian - Jurassic: - text: Jurassic - Mesozoic: - text: Mesozoic - Neogene: - text: Neogene - Ordovician: - text: Ordovician - Paleogene: - text: Paleogene - Paleozoic: - text: Paleozoic - Permian: - text: Permian - Precambrian: - text: Precambrian - Proterozoic: - text: Proterozoic - Silurian: - text: Silurian - Triassic: - text: Triassic + left: + text: left + middle: + text: middle + right: + text: right + wall_finish_mat_enum: + name: wall_finish_mat_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + plaster: + text: plaster + gypsum plaster: + text: gypsum plaster + veneer plaster: + text: veneer plaster + gypsum board: + text: gypsum board + tile: + text: tile + terrazzo: + text: terrazzo + stone facing: + text: stone facing + acoustical treatment: + text: acoustical treatment + wood: + text: wood + metal: + text: metal + masonry: + text: masonry + depos_env_enum: + name: depos_env_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + Continental - Alluvial: + text: Continental - Alluvial + Continental - Aeolian: + text: Continental - Aeolian + Continental - Fluvial: + text: Continental - Fluvial + Continental - Lacustrine: + text: Continental - Lacustrine + Transitional - Deltaic: + text: Transitional - Deltaic + Transitional - Tidal: + text: Transitional - Tidal + Transitional - Lagoonal: + text: Transitional - Lagoonal + Transitional - Beach: + text: Transitional - Beach + Transitional - Lake: + text: Transitional - Lake + Marine - Shallow: + text: Marine - Shallow + Marine - Deep: + text: Marine - Deep + Marine - Reef: + text: Marine - Reef + Other - Evaporite: + text: Other - Evaporite + Other - Glacial: + text: Other - Glacial + Other - Volcanic: + text: Other - Volcanic other: text: other - fao_class_enum: - name: fao_class_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + indoor_surf_enum: + name: indoor_surf_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Acrisols: - text: Acrisols - Andosols: - text: Andosols - Arenosols: - text: Arenosols - Cambisols: - text: Cambisols - Chernozems: - text: Chernozems - Ferralsols: - text: Ferralsols - Fluvisols: - text: Fluvisols - Gleysols: - text: Gleysols - Greyzems: - text: Greyzems - Gypsisols: - text: Gypsisols - Histosols: - text: Histosols - Kastanozems: - text: Kastanozems - Lithosols: - text: Lithosols - Luvisols: - text: Luvisols - Nitosols: - text: Nitosols - Phaeozems: - text: Phaeozems - Planosols: - text: Planosols - Podzols: - text: Podzols - Podzoluvisols: - text: Podzoluvisols - Rankers: - text: Rankers - Regosols: - text: Regosols - Rendzinas: - text: Rendzinas - Solonchaks: - text: Solonchaks - Solonetz: - text: Solonetz - Vertisols: - text: Vertisols - Yermosols: - text: Yermosols - wall_const_type_enum: - name: wall_const_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + cabinet: + text: cabinet + ceiling: + text: ceiling + counter top: + text: counter top + door: + text: door + shelving: + text: shelving + vent cover: + text: vent cover + window: + text: window + wall: + text: wall + floor_water_mold_enum: + name: floor_water_mold_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - frame construction: - text: frame construction - joisted masonry: - text: joisted masonry - light noncombustible: - text: light noncombustible - masonry noncombustible: - text: masonry noncombustible - modified fire resistive: - text: modified fire resistive - fire resistive: - text: fire resistive - room_samp_pos_enum: - name: room_samp_pos_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + mold odor: + text: mold odor + wet floor: + text: wet floor + water stains: + text: water stains + wall discoloration: + text: wall discoloration + floor discoloration: + text: floor discoloration + ceiling discoloration: + text: ceiling discoloration + peeling paint or wallpaper: + text: peeling paint or wallpaper + bulging walls: + text: bulging walls + condensation: + text: condensation + freq_clean_enum: + name: freq_clean_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - north corner: - text: north corner - south corner: - text: south corner - west corner: - text: west corner - east corner: - text: east corner - northeast corner: - text: northeast corner - northwest corner: - text: northwest corner - southeast corner: - text: southeast corner - southwest corner: - text: southwest corner - center: - text: center + Daily: + text: Daily + Weekly: + text: Weekly + Monthly: + text: Monthly + Quarterly: + text: Quarterly + Annually: + text: Annually + other: + text: other + heat_cool_type_enum: + name: heat_cool_type_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + radiant system: + text: radiant system + heat pump: + text: heat pump + forced air system: + text: forced air system + steam forced heat: + text: steam forced heat + wood stove: + text: wood stove + door_comp_type_enum: + name: door_comp_type_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + metal covered: + text: metal covered + revolving: + text: revolving + sliding: + text: sliding + telescopic: + text: telescopic window_cond_enum: name: window_cond_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: damaged: text: damaged @@ -2803,127 +2443,183 @@ enums: text: rupture visible wear: text: visible wear - sr_geol_age_enum: - name: sr_geol_age_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + ceil_type_enum: + name: ceil_type_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Archean: - text: Archean - Cambrian: - text: Cambrian - Carboniferous: - text: Carboniferous - Cenozoic: - text: Cenozoic - Cretaceous: - text: Cretaceous - Devonian: - text: Devonian - Jurassic: - text: Jurassic - Mesozoic: - text: Mesozoic - Neogene: - text: Neogene - Ordovician: - text: Ordovician - Paleogene: - text: Paleogene - Paleozoic: - text: Paleozoic - Permian: - text: Permian - Precambrian: - text: Precambrian - Proterozoic: - text: Proterozoic - Silurian: - text: Silurian - Triassic: - text: Triassic + cathedral: + text: cathedral + dropped: + text: dropped + concave: + text: concave + barrel-shaped: + text: barrel-shaped + coffered: + text: coffered + cove: + text: cove + stretched: + text: stretched + biotic_relationship_enum: + name: biotic_relationship_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + free living: + text: free living + parasite: + text: parasite + commensal: + text: commensal + symbiont: + text: symbiont + samp_subtype_enum: + name: samp_subtype_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + oil phase: + text: oil phase + water phase: + text: water phase + biofilm: + text: biofilm + not applicable: + text: not applicable other: text: other - tillage_enum: - name: tillage_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + shading_device_type_enum: + name: shading_device_type_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - drill: - text: drill - cutting disc: - text: cutting disc - ridge till: - text: ridge till - strip tillage: - text: strip tillage - zonal tillage: - text: zonal tillage - chisel: - text: chisel - tined: - text: tined - mouldboard: - text: mouldboard - disc plough: - text: disc plough - heat_deliv_loc_enum: - name: heat_deliv_loc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + bahama shutters: + text: bahama shutters + exterior roll blind: + text: exterior roll blind + gambrel awning: + text: gambrel awning + hood awning: + text: hood awning + porchroller awning: + text: porchroller awning + sarasota shutters: + text: sarasota shutters + slatted aluminum: + text: slatted aluminum + solid aluminum awning: + text: solid aluminum awning + sun screen: + text: sun screen + tree: + text: tree + trellis: + text: trellis + venetian awning: + text: venetian awning + specific_enum: + name: specific_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - handidness_enum: - name: handidness_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + operation: + text: operation + as built: + text: as built + construction: + text: construction + bid: + text: bid + design: + text: design + photos: + text: photos + season_use_enum: + name: season_use_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + Spring: + text: Spring + Summer: + text: Summer + Fall: + text: Fall + Winter: + text: Winter + door_cond_enum: + name: door_cond_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - ambidexterity: - text: ambidexterity - left handedness: - text: left handedness - mixed-handedness: - text: mixed-handedness - right handedness: - text: right handedness - hcr_enum: - name: hcr_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + damaged: + text: damaged + needs repair: + text: needs repair + new: + text: new + rupture: + text: rupture + visible wear: + text: visible wear + quad_pos_enum: + name: quad_pos_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Oil Reservoir: - text: Oil Reservoir - Gas Reservoir: - text: Gas Reservoir - Oil Sand: - text: Oil Sand - Coalbed: - text: Coalbed - Shale: - text: Shale - Tight Oil Reservoir: - text: Tight Oil Reservoir - Tight Gas Reservoir: - text: Tight Gas Reservoir - other: - text: other - window_loc_enum: - name: window_loc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + North side: + text: North side + West side: + text: West side + South side: + text: South side + East side: + text: East side + samp_weather_enum: + name: samp_weather_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west + clear sky: + text: clear sky + cloudy: + text: cloudy + foggy: + text: foggy + hail: + text: hail + rain: + text: rain + snow: + text: snow + sleet: + text: sleet + sunny: + text: sunny + windy: + text: windy + room_connected_enum: + name: room_connected_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + attic: + text: attic + bathroom: + text: bathroom + closet: + text: closet + conference room: + text: conference room + elevator: + text: elevator + examining room: + text: examining room + hallway: + text: hallway + kitchen: + text: kitchen + mail room: + text: mail room + office: + text: office + stairwell: + text: stairwell gender_restroom_enum: name: gender_restroom_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: all gender: text: all gender @@ -2937,276 +2633,577 @@ enums: text: male and female unisex: text: unisex - ceil_texture_enum: - name: ceil_texture_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + host_sex_enum: + name: host_sex_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - crows feet: - text: crows feet - crows-foot stomp: - text: crows-foot stomp - double skip: - text: double skip - hawk and trowel: - text: hawk and trowel - knockdown: - text: knockdown - popcorn: - text: popcorn - orange peel: - text: orange peel - rosebud stomp: - text: rosebud stomp - Santa-Fe texture: - text: Santa-Fe texture - skip trowel: - text: skip trowel - smooth: - text: smooth - stomp knockdown: - text: stomp knockdown - swirl: - text: swirl - train_stat_loc_enum: - name: train_stat_loc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + female: + text: female + hermaphrodite: + text: hermaphrodite + male: + text: male + neuter: + text: neuter + weekday_enum: + name: weekday_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - south station above ground: - text: south station above ground - south station underground: - text: south station underground - south station amtrak: - text: south station amtrak - forest hills: - text: forest hills - riverside: - text: riverside - plant_sex_enum: - name: plant_sex_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + Monday: + text: Monday + Tuesday: + text: Tuesday + Wednesday: + text: Wednesday + Thursday: + text: Thursday + Friday: + text: Friday + Saturday: + text: Saturday + Sunday: + text: Sunday + surf_air_cont_enum: + name: surf_air_cont_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - Androdioecious: - text: Androdioecious - Androecious: - text: Androecious - Androgynous: - text: Androgynous - Androgynomonoecious: - text: Androgynomonoecious - Andromonoecious: - text: Andromonoecious - Bisexual: - text: Bisexual - Dichogamous: - text: Dichogamous - Diclinous: - text: Diclinous - Dioecious: - text: Dioecious - Gynodioecious: - text: Gynodioecious - Gynoecious: - text: Gynoecious - Gynomonoecious: - text: Gynomonoecious - Hermaphroditic: - text: Hermaphroditic - Imperfect: - text: Imperfect - Monoclinous: - text: Monoclinous - Monoecious: - text: Monoecious - Perfect: - text: Perfect - Polygamodioecious: - text: Polygamodioecious - Polygamomonoecious: - text: Polygamomonoecious - Polygamous: - text: Polygamous - Protandrous: - text: Protandrous - Protogynous: - text: Protogynous - Subandroecious: - text: Subandroecious - Subdioecious: - text: Subdioecious - Subgynoecious: - text: Subgynoecious - Synoecious: - text: Synoecious - Trimonoecious: - text: Trimonoecious - Trioecious: - text: Trioecious - Unisexual: - text: Unisexual - door_loc_enum: - name: door_loc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + dust: + text: dust + organic matter: + text: organic matter + particulate matter: + text: particulate matter + volatile organic compounds: + text: volatile organic compounds + biological contaminants: + text: biological contaminants + radon: + text: radon + nutrients: + text: nutrients + biocides: + text: biocides + filter_type_enum: + name: filter_type_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + particulate air filter: + text: particulate air filter + chemical air filter: + text: chemical air filter + low-MERV pleated media: + text: low-MERV pleated media + HEPA: + text: HEPA + electrostatic: + text: electrostatic + gas-phase or ultraviolet air treatments: + text: gas-phase or ultraviolet air treatments + light_type_enum: + name: light_type_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west + natural light: + text: natural light + electric light: + text: electric light + desk lamp: + text: desk lamp + flourescent lights: + text: flourescent lights + none: + text: none + arch_struc_enum: + name: arch_struc_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + building: + text: building + shed: + text: shed + home: + text: home + wall_const_type_enum: + name: wall_const_type_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + frame construction: + text: frame construction + joisted masonry: + text: joisted masonry + light noncombustible: + text: light noncombustible + masonry noncombustible: + text: masonry noncombustible + modified fire resistive: + text: modified fire resistive + fire resistive: + text: fire resistive + occup_document_enum: + name: occup_document_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + automated count: + text: automated count + estimate: + text: estimate + manual count: + text: manual count + videos: + text: videos + drainage_class_enum: + name: drainage_class_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + very poorly: + text: very poorly + poorly: + text: poorly + somewhat poorly: + text: somewhat poorly + moderately well: + text: moderately well + well: + text: well + excessively drained: + text: excessively drained room_type_enum: name: room_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + attic: + text: attic + bathroom: + text: bathroom + closet: + text: closet + conference room: + text: conference room + elevator: + text: elevator + examining room: + text: examining room + hallway: + text: hallway + kitchen: + text: kitchen + mail room: + text: mail room + private office: + text: private office + open office: + text: open office + stairwell: + text: stairwell + ',restroom': + text: ',restroom' + lobby: + text: lobby + vestibule: + text: vestibule + mechanical or electrical room: + text: mechanical or electrical room + data center: + text: data center + laboratory_wet: + text: laboratory_wet + laboratory_dry: + text: laboratory_dry + gymnasium: + text: gymnasium + natatorium: + text: natatorium + auditorium: + text: auditorium + lockers: + text: lockers + cafe: + text: cafe + warehouse: + text: warehouse + room_loc_enum: + name: room_loc_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + corner room: + text: corner room + interior room: + text: interior room + exterior wall: + text: exterior wall + int_wall_cond_enum: + name: int_wall_cond_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + new: + text: new + visible wear: + text: visible wear + needs repair: + text: needs repair + damaged: + text: damaged + rupture: + text: rupture + cur_land_use_enum: + name: cur_land_use_enum + from_schema: https://w3id.org/nmdc/nmdc + permissible_values: + badlands: + text: badlands + cities: + text: cities + conifers: + text: conifers + annotations: + originally: + tag: originally + value: conifers (e.g. pine,spruce,fir,cypress) + examples: + - value: cypress + - value: fir + - value: pine + - value: spruce + crop trees: + text: crop trees + annotations: + originally: + tag: originally + value: crop trees (nuts,fruit,christmas trees,nursery trees) + examples: + - value: christmas trees + - value: fruit + - value: nursery trees + - value: nuts + farmstead: + text: farmstead + gravel: + text: gravel + hardwoods: + text: hardwoods + annotations: + originally: + tag: originally + value: hardwoods (e.g. oak,hickory,elm,aspen) + examples: + - value: aspen + - value: elm + - value: hickory + - value: oak + hayland: + text: hayland + horticultural plants: + text: horticultural plants + annotations: + originally: + tag: originally + value: horticultural plants (e.g. tulips) + examples: + - value: tulips + industrial areas: + text: industrial areas + intermixed hardwood and conifers: + text: intermixed hardwood and conifers + marshlands: + text: marshlands + annotations: + originally: + tag: originally + value: marshlands (grass,sedges,rushes) + examples: + - value: grass + - value: rushes + - value: sedgees + meadows: + text: meadows + annotations: + originally: + tag: originally + value: meadows (grasses,alfalfa,fescue,bromegrass,timothy) + examples: + - value: alfalfa + - value: bromegrass + - value: fescue + - value: grasses + - value: timothy + mines/quarries: + text: mines/quarries + mudflats: + text: mudflats + oil waste areas: + text: oil waste areas + pastureland: + text: pastureland + annotations: + originally: + tag: originally + value: pastureland (grasslands used for livestock grazing) + comments: + - grasslands used for livestock grazing + permanent snow or ice: + text: permanent snow or ice + rainforest: + text: rainforest + annotations: + originally: + tag: originally + value: rainforest (evergreen forest receiving greater than 406 cm annual + rainfall) + comments: + - evergreen forest receiving greater than 406 cm annual rainfall + rangeland: + text: rangeland + roads/railroads: + text: roads/railroads + rock: + text: rock + row crops: + text: row crops + saline seeps: + text: saline seeps + salt flats: + text: salt flats + sand: + text: sand + shrub crops: + text: shrub crops + annotations: + originally: + tag: originally + value: shrub crops (blueberries,nursery ornamentals,filberts) + examples: + - value: blueberries + - value: filberts + - value: nursery ornamentals + shrub land: + text: shrub land + annotations: + originally: + tag: originally + value: shrub land (e.g. mesquite,sage-brush,creosote bush,shrub oak,eucalyptus) + examples: + - value: creosote bush + - value: eucalyptus + - value: mesquite + - value: sage-brush + - value: shrub oak + small grains: + text: small grains + successional shrub land: + text: successional shrub land + annotations: + originally: + tag: originally + value: successional shrub land (tree saplings,hazels,sumacs,chokecherry,shrub + dogwoods,blackberries) + examples: + - value: blackberries + - value: chokecherry + - value: hazels + - value: shrub dogwoods + - value: sumacs + - value: tree saplings + swamp: + text: swamp + annotations: + originally: + tag: originally + value: swamp (permanent or semi-permanent water body dominated by woody + plants) + comments: + - permanent or semi-permanent water body dominated by woody plants + tropical: + text: tropical + annotations: + originally: + tag: originally + value: tropical (e.g. mangrove,palms) + examples: + - value: mangrove + - value: palms + tundra: + text: tundra + annotations: + originally: + tag: originally + value: tundra (mosses,lichens) + examples: + - value: lichens + - value: mosses + vegetable crops: + text: vegetable crops + vine crops: + text: vine crops + annotations: + originally: + tag: originally + value: vine crops (grapes) + examples: + - value: grapes + door_mat_enum: + name: door_mat_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - attic: - text: attic - bathroom: - text: bathroom - closet: - text: closet - conference room: - text: conference room - elevator: - text: elevator - examining room: - text: examining room - hallway: - text: hallway - kitchen: - text: kitchen - mail room: - text: mail room - private office: - text: private office - open office: - text: open office - stairwell: - text: stairwell - ',restroom': - text: ',restroom' - lobby: - text: lobby - vestibule: - text: vestibule - mechanical or electrical room: - text: mechanical or electrical room - data center: - text: data center - laboratory_wet: - text: laboratory_wet - laboratory_dry: - text: laboratory_dry - gymnasium: - text: gymnasium - natatorium: - text: natatorium - auditorium: - text: auditorium - lockers: - text: lockers - cafe: - text: cafe - warehouse: - text: warehouse - samp_capt_status_enum: - name: samp_capt_status_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + aluminum: + text: aluminum + cellular PVC: + text: cellular PVC + engineered plastic: + text: engineered plastic + fiberboard: + text: fiberboard + fiberglass: + text: fiberglass + metal: + text: metal + thermoplastic alloy: + text: thermoplastic alloy + vinyl: + text: vinyl + wood: + text: wood + wood/plastic composite: + text: wood/plastic composite + fao_class_enum: + name: fao_class_enum + from_schema: https://w3id.org/nmdc/nmdc permissible_values: - active surveillance in response to an outbreak: - text: active surveillance in response to an outbreak - active surveillance not initiated by an outbreak: - text: active surveillance not initiated by an outbreak - farm sample: - text: farm sample - market sample: - text: market sample - other: - text: other + Acrisols: + text: Acrisols + Andosols: + text: Andosols + Arenosols: + text: Arenosols + Cambisols: + text: Cambisols + Chernozems: + text: Chernozems + Ferralsols: + text: Ferralsols + Fluvisols: + text: Fluvisols + Gleysols: + text: Gleysols + Greyzems: + text: Greyzems + Gypsisols: + text: Gypsisols + Histosols: + text: Histosols + Kastanozems: + text: Kastanozems + Lithosols: + text: Lithosols + Luvisols: + text: Luvisols + Nitosols: + text: Nitosols + Phaeozems: + text: Phaeozems + Planosols: + text: Planosols + Podzols: + text: Podzols + Podzoluvisols: + text: Podzoluvisols + Rankers: + text: Rankers + Regosols: + text: Regosols + Rendzinas: + text: Rendzinas + Solonchaks: + text: Solonchaks + Solonetz: + text: Solonetz + Vertisols: + text: Vertisols + Yermosols: + text: Yermosols slots: neon_deims_sdr_link: name: neon_deims_sdr_link - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string neon_eco_type: name: neon_eco_type - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string neon_soil_type: name: neon_soil_type - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string ecosystem_path_id: name: ecosystem_path_id description: A unique id representing the GOLD classifers associated with a sample. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string habitat: name: habitat - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string location: name: location - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string community: name: community - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string ncbi_taxonomy_name: name: ncbi_taxonomy_name - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string ncbi_project_name: name: ncbi_project_name - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string sample_collection_site: name: sample_collection_site - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string sample_collection_year: name: sample_collection_year - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer sample_collection_month: name: sample_collection_month - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc status: name: status - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: StatusEnum library_preparation_kit: name: library_preparation_kit - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string extraction_method: name: extraction_method - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc extraction_target: name: extraction_target - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: ExtractionTargetEnum quality_control_report: name: quality_control_report - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: QualityControlReport pcr_cycles: name: pcr_cycles - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc exact_mappings: - OBI:0002475 range: integer sample_mass: name: sample_mass - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: QuantityValue library_type: name: library_type title: library type examples: - value: DNA - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: LibraryTypeEnum zinc: name: zinc @@ -3224,7 +3221,7 @@ slots: title: zinc examples: - value: 2.5 mg/kg - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://www.ornl.gov/content/bio-scales-0 aliases: @@ -3247,7 +3244,7 @@ slots: title: manganese examples: - value: 24.7 mg/kg - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://www.ornl.gov/content/bio-scales-0 aliases: @@ -3270,7 +3267,7 @@ slots: title: ammonium nitrogen examples: - value: 2.3 mg/kg - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://www.ornl.gov/content/bio-scales-0 aliases: @@ -3296,7 +3293,7 @@ slots: - often below some specified limit of detection examples: - value: 0.29 mg/kg - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://www.ornl.gov/content/bio-scales-0 aliases: @@ -3320,7 +3317,7 @@ slots: title: nitrite_nitrogen examples: - value: 1.2 mg/kg - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://www.ornl.gov/content/bio-scales-0 aliases: @@ -3347,7 +3344,7 @@ slots: one pH unit examples: - value: 543 mg/kg - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://www.ornl.gov/content/bio-scales-0 - https://secure.caes.uga.edu/extension/publications/files/pdf/C%20874_5.PDF @@ -3376,7 +3373,7 @@ slots: one pH unit examples: - value: 1575 mg/kg - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://www.ornl.gov/content/bio-scales-0 aliases: @@ -3393,7 +3390,7 @@ slots: subtables and can be reported in_subset: - mixs extension - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - environmental package is_a: attribute @@ -3406,7 +3403,7 @@ slots: - first apply to Biosample - try to apply to all Biosamples in a particular nmdc-server SubmissionMetadata? - applying to a Study may nto be granular enough - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: boolean recommended: true collected_from: @@ -3416,43 +3413,43 @@ slots: - add an OBO slot_uri ? comments: - this illustrates implementing a Biosample relation with a (binary) slot - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc domain: Biosample range: FieldResearchSite biosample_categories: name: biosample_categories title: Categories the biosample belongs to - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: true range: biosample_category_enum date_created: name: date_created description: from database class - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc etl_software_version: name: etl_software_version description: from database class - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc related_identifiers: name: related_identifiers description: Identifiers assigned to a thing that is similar to that which is represented in NMDC. Related identifier are not an identical match and may have some variation. title: Related Identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc notes: name: notes description: from study class - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc canary: name: canary description: a slot that can be added and removed as evidence that schema changes have propagated to other systems - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc ess_dive_datasets: name: ess_dive_datasets description: List of ESS-DIVE dataset DOIs - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: true has_credit_associations: name: has_credit_associations @@ -3465,7 +3462,7 @@ slots: semantics: person should get credit X for their participation in the study' notes: - 'had just been "inlined: true"' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc domain: Study slot_uri: prov:qualifiedAssociation multivalued: true @@ -3474,26 +3471,26 @@ slots: study_image: name: study_image description: Links a study to one or more images. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc domain: Study multivalued: true range: ImageValue inlined: true relevant_protocols: name: relevant_protocols - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: true range: string funding_sources: name: funding_sources - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: true range: string applied_role: name: applied_role deprecated: A credit association may have multiple roles. So, use the applied roles slot. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc domain: CreditAssociation slot_uri: prov:hadRole range: credit enum @@ -3505,7 +3502,7 @@ slots: value: 'Identify all CRediT roles associated with this contributor. CRediT Information: https://info.orcid.org/credit-for-research-contribution ; CRediT: https://credit.niso.org/' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc domain: CreditAssociation multivalued: true range: credit enum @@ -3516,7 +3513,7 @@ slots: - prov:agent takes an Agent object. Is a person value an Agent? Also try to relate to principal investigator slot? could include OBI:0000103 principal investigator role... do we need to define the OBI prefix? - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc domain: CreditAssociation range: PersonValue required: true @@ -3525,7 +3522,7 @@ slots: description: Applies to a property that links a database object to a set of objects. This is necessary in a json document to provide context for a list, and to allow for a single json object that combines multiple object types - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixin: true domain: Database multivalued: true @@ -3534,7 +3531,7 @@ slots: name: biosample_set description: This property links a database object to the set of samples within it. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3544,7 +3541,7 @@ slots: name: study_set description: This property links a database object to the set of studies within it. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3552,14 +3549,14 @@ slots: range: Study field_research_site_set: name: field_research_site_set - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc domain: Database multivalued: true range: FieldResearchSite inlined_as_list: true collecting_biosamples_from_site_set: name: collecting_biosamples_from_site_set - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc domain: Database multivalued: true range: CollectingBiosamplesFromSite @@ -3568,7 +3565,7 @@ slots: name: data_object_set description: This property links a database object to the set of data objects within it. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3577,7 +3574,7 @@ slots: genome_feature_set: name: genome_feature_set description: This property links a database object to the set of all features - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3587,7 +3584,7 @@ slots: name: functional_annotation_set description: This property links a database object to the set of all functional annotations - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3596,7 +3593,7 @@ slots: activity_set: name: activity_set description: This property links a database object to the set of workflow activities. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3606,7 +3603,7 @@ slots: name: mags_activity_set description: This property links a database object to the set of MAGs analysis activities. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3616,7 +3613,7 @@ slots: name: metabolomics_analysis_activity_set description: This property links a database object to the set of metabolomics analysis activities. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3626,7 +3623,7 @@ slots: name: metaproteomics_analysis_activity_set description: This property links a database object to the set of metaproteomics analysis activities. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3636,7 +3633,7 @@ slots: name: metagenome_annotation_activity_set description: This property links a database object to the set of metagenome annotation activities. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3646,7 +3643,7 @@ slots: name: metagenome_assembly_set description: This property links a database object to the set of metagenome assembly activities. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3656,7 +3653,7 @@ slots: name: metagenome_sequencing_activity_set description: This property links a database object to the set of metagenome sequencing activities. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3666,7 +3663,7 @@ slots: name: metatranscriptome_activity_set description: This property links a database object to the set of metatranscriptome analysis activities. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3676,7 +3673,7 @@ slots: name: read_qc_analysis_activity_set description: This property links a database object to the set of read QC analysis activities. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3686,7 +3683,7 @@ slots: name: read_based_taxonomy_analysis_activity_set description: This property links a database object to the set of read based analysis activities. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3696,7 +3693,7 @@ slots: name: nom_analysis_activity_set description: This property links a database object to the set of natural organic matter (NOM) analysis activities. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3706,7 +3703,7 @@ slots: name: omics_processing_set description: This property links a database object to the set of omics processings within it. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3714,7 +3711,7 @@ slots: range: OmicsProcessing pooling_set: name: pooling_set - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3724,7 +3721,7 @@ slots: name: processed_sample_set description: This property links a database object to the set of processed samples within it. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3734,7 +3731,7 @@ slots: name: extraction_set description: This property links a database object to the set of extractions within it. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3744,7 +3741,7 @@ slots: name: library_preparation_set description: This property links a database object to the set of DNA extractions within it. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - library_construction_set mixins: @@ -3761,7 +3758,7 @@ slots: examples: - value: metatranscriptome - value: metagenome - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: ControlledTermValue data_object_type: name: data_object_type @@ -3769,7 +3766,7 @@ slots: examples: - value: FT ICR-MS Analysis Results - value: GC-MS Metabolomics Results - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: file type enum compression_type: name: compression_type @@ -3778,16 +3775,16 @@ slots: - consider enum examples: - value: gzip - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string instrument_name: name: instrument_name description: The name of the instrument that was used for processing the sample. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc gold_path_field: name: gold_path_field description: This is a grouping for any of the gold path fields - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: attribute abstract: true range: string @@ -3804,7 +3801,7 @@ slots: are Environmental, Host-associated, and Engineered. They represent samples collected from a natural environment or from another organism or from engineered environments like bioreactors respectively. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://gold.jgi.doe.gov/help is_a: gold_path_field @@ -3818,7 +3815,7 @@ slots: Ecosystem categories for Host-associated samples can be individual hosts or phyla and for engineered samples it may be manipulated environments like bioreactors, solid waste etc. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://gold.jgi.doe.gov/help is_a: gold_path_field @@ -3833,7 +3830,7 @@ slots: or Thermal springs etc. Ecosystem category Air may have Indoor air or Outdoor air as different Ecosystem Types. In the case of Host-associated samples, ecosystem type can represent Respiratory system, Digestive system, Roots etc. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://gold.jgi.doe.gov/help is_a: gold_path_field @@ -3846,7 +3843,7 @@ slots: - Ecosystem Type Marine (Environmental -> Aquatic -> Marine) is further divided (for example) into Intertidal zone, Coastal, Pelagic, Intertidal zone etc. in the Ecosystem subtype category. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://gold.jgi.doe.gov/help is_a: gold_path_field @@ -3858,44 +3855,44 @@ slots: comments: - Specific ecosystems help to define samples based on very specific characteristics of an environment under the five-level classification system. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://gold.jgi.doe.gov/help is_a: gold_path_field principal_investigator: name: principal_investigator description: Principal Investigator who led the study and/or generated the dataset. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - PI is_a: attribute range: PersonValue doi: name: doi - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: attribute range: AttributeValue add_date: name: add_date description: The date on which the information was added to the database. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string mod_date: name: mod_date description: The last date on which the database information was modified. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string sample_collection_day: name: sample_collection_day - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer sample_collection_hour: name: sample_collection_hour - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer sample_collection_minute: name: sample_collection_minute - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer salinity_category: name: salinity_category @@ -3903,91 +3900,91 @@ slots: halotolerant, hypersaline, huryhaline' notes: - maps to gold:salinity - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://github.com/microbiomedata/nmdc-metadata/pull/297 range: string soluble_iron_micromol: name: soluble_iron_micromol - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string host_name: name: host_name - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string subsurface_depth: name: subsurface_depth - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: QuantityValue proport_woa_temperature: name: proport_woa_temperature - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string biogas_temperature: name: biogas_temperature - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string soil_annual_season_temp: name: soil_annual_season_temp - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string biogas_retention_time: name: biogas_retention_time - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string processing_institution: name: processing_institution description: The organization that processed the sample. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: processing_institution_enum completion_date: name: completion_date - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string metagenome_assembly_parameter: name: metagenome_assembly_parameter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc has_peptide_quantifications: name: has_peptide_quantifications - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: true range: PeptideQuantification asm_score: name: asm_score description: A score for comparing metagenomic assembly quality from same sample. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float scaffolds: name: scaffolds description: Total sequence count of all scaffolds. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float scaf_logsum: name: scaf_logsum description: The sum of the (length*log(length)) of all scaffolds, times some constant. Increase the contiguity, the score will increase - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float scaf_powsum: name: scaf_powsum description: Powersum of all scaffolds is the same as logsum except that it uses the sum of (length*(length^P)) for some power P (default P=0.25). - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float scaf_max: name: scaf_max description: Maximum scaffold length. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float scaf_bp: name: scaf_bp description: Total size in bp of all scaffolds. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float scaf_n50: @@ -3995,7 +3992,7 @@ slots: description: Given a set of scaffolds, each with its own length, the N50 count is defined as the smallest number of scaffolds whose length sum makes up half of genome size. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float scaf_n90: @@ -4003,14 +4000,14 @@ slots: description: Given a set of scaffolds, each with its own length, the N90 count is defined as the smallest number of scaffolds whose length sum makes up 90% of genome size. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float scaf_l50: name: scaf_l50 description: Given a set of scaffolds, the L50 is defined as the sequence length of the shortest scaffold at 50% of the total genome length. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float scaf_l90: @@ -4018,38 +4015,38 @@ slots: description: The L90 statistic is less than or equal to the L50 statistic; it is the length for which the collection of all scaffolds of that length or longer contains at least 90% of the sum of the lengths of all scaffolds. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float scaf_n_gt50k: name: scaf_n_gt50k description: Total sequence count of scaffolds greater than 50 KB. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float scaf_l_gt50k: name: scaf_l_gt50k description: Total size in bp of all scaffolds greater than 50 KB. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float scaf_pct_gt50k: name: scaf_pct_gt50k description: Total sequence size percentage of scaffolds greater than 50 KB. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float contigs: name: contigs description: The sum of the (length*log(length)) of all contigs, times some constant. Increase the contiguity, the score will increase - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float contig_bp: name: contig_bp description: Total size in bp of all contigs. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float ctg_n50: @@ -4057,14 +4054,14 @@ slots: description: Given a set of contigs, each with its own length, the N50 count is defined as the smallest number_of_contigs whose length sum makes up half of genome size. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float ctg_l50: name: ctg_l50 description: Given a set of contigs, the L50 is defined as the sequence length of the shortest contig at 50% of the total genome length. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float ctg_n90: @@ -4072,7 +4069,7 @@ slots: description: Given a set of contigs, each with its own length, the N90 count is defined as the smallest number of contigs whose length sum makes up 90% of genome size. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float ctg_l90: @@ -4080,221 +4077,221 @@ slots: description: The L90 statistic is less than or equal to the L50 statistic; it is the length for which the collection of all contigs of that length or longer contains at least 90% of the sum of the lengths of all contigs. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float ctg_logsum: name: ctg_logsum description: Maximum contig length. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float ctg_powsum: name: ctg_powsum description: Powersum of all contigs is the same as logsum except that it uses the sum of (length*(length^P)) for some power P (default P=0.25). - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float ctg_max: name: ctg_max description: Maximum contig length. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float gap_pct: name: gap_pct description: The gap size percentage of all scaffolds. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float gc_std: name: gc_std description: Standard deviation of GC content of all contigs. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float gc_avg: name: gc_avg description: Average of GC content of all contigs. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float num_input_reads: name: num_input_reads description: The sequence count number of input reads for assembly. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float num_aligned_reads: name: num_aligned_reads description: The sequence count number of input reads aligned to assembled contigs. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: metagenome_assembly_parameter range: float read_qc_analysis_statistic: name: read_qc_analysis_statistic - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mags_list: name: mags_list - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: true range: MagBin too_short_contig_num: name: too_short_contig_num - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer binned_contig_num: name: binned_contig_num - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer input_contig_num: name: input_contig_num - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer unbinned_contig_num: name: unbinned_contig_num - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer low_depth_contig_num: name: low_depth_contig_num - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer input_read_count: name: input_read_count description: The sequence count number of input reads for QC analysis. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: read_qc_analysis_statistic range: float input_base_count: name: input_base_count description: The nucleotide base count number of input reads for QC analysis. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: read_qc_analysis_statistic range: float output_read_count: name: output_read_count description: After QC analysis sequence count number. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: read_qc_analysis_statistic range: float output_base_count: name: output_base_count description: After QC analysis nucleotide base count number. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: read_qc_analysis_statistic range: float output_read_bases: name: output_read_bases description: TODO - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: float input_read_bases: name: input_read_bases description: 'TODO ' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: float has_calibration: name: has_calibration description: A reference to a file that holds calibration information. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string has_metabolite_quantifications: name: has_metabolite_quantifications - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: true range: MetaboliteQuantification version: name: version - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc total_bases: name: total_bases todos: - this slot needs some basic textual annotations and constraints - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc members_id: name: members_id todos: - this slot needs some basic textual annotations and constraints - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc bin_name: name: bin_name - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string number_of_contig: name: number_of_contig - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer completeness: name: completeness - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: float contamination: name: contamination - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: float gene_count: name: gene_count - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer bin_quality: name: bin_quality - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string num_16s: name: num_16s - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer num_5s: name: num_5s - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer num_23s: name: num_23s - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer num_t_rna: name: num_t_rna - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer gtdbtk_domain: name: gtdbtk_domain - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string gtdbtk_phylum: name: gtdbtk_phylum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string gtdbtk_class: name: gtdbtk_class - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string gtdbtk_order: name: gtdbtk_order - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string gtdbtk_family: name: gtdbtk_family - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string gtdbtk_genus: name: gtdbtk_genus - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string gtdbtk_species: name: gtdbtk_species - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string language: name: language description: Should use ISO 639-1 code e.g. "en", "fr" - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: language code attribute: name: attribute description: 'A attribute of a biosample. Examples: depth, habitat, material. For NMDC, attributes SHOULD be mapped to terms within a MIxS template' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - field - property @@ -4306,14 +4303,14 @@ slots: name: has_raw_value description: The value that was specified for an annotation in raw form, i.e. a string. E.g. "2 cm" or "2-4 cm" - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc domain: AttributeValue multivalued: false range: string has_unit: name: has_unit description: Links a QuantityValue to a unit - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - scale mappings: @@ -4323,7 +4320,7 @@ slots: has_numeric_value: name: has_numeric_value description: Links a quantity value to a number - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mappings: - qud:quantityValue - schema:value @@ -4333,18 +4330,18 @@ slots: name: has_minimum_numeric_value description: The minimum value part, expressed as number, of the quantity value when the value covers a range. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: has_numeric_value has_maximum_numeric_value: name: has_maximum_numeric_value description: The maximum value part, expressed as number, of the quantity value when the value covers a range. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: has_numeric_value has_boolean_value: name: has_boolean_value description: Links a quantity value to a boolean - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: false range: boolean latitude: @@ -4352,7 +4349,7 @@ slots: description: latitude examples: - value: '-33.460524' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mappings: - schema:latitude domain: GeolocationValue @@ -4363,7 +4360,7 @@ slots: description: longitude examples: - value: '150.168149' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mappings: - schema:longitude domain: GeolocationValue @@ -4374,38 +4371,38 @@ slots: description: pointer to an ontology class notes: - 'removed ''slot_uri: rdf:type''' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc domain: ControlledTermValue range: OntologyClass inlined: true orcid: name: orcid description: The ORCID of a person. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc domain: PersonValue range: string email: name: email description: An email address for an entity such as a person. This should be the primary email address used. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc slot_uri: schema:email range: string alternate_emails: name: alternate_emails description: One or more other email addresses for an entity. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string profile_image_url: name: profile_image_url description: A url that points to an image of a person. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc domain: PersonValue range: string has_input: name: has_input description: An input to a process. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - input domain: NamedThing @@ -4414,7 +4411,7 @@ slots: has_output: name: has_output description: An output biosample to a processing step - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - output domain: NamedThing @@ -4424,7 +4421,7 @@ slots: name: part_of description: Links a resource to another resource that either logically or physically includes it. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - is part of domain: NamedThing @@ -4434,44 +4431,44 @@ slots: execution_resource: name: execution_resource description: 'Example: NERSC-Cori' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: attribute url: name: url notes: - See issue 207 - this clashes with the mixs field - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: attribute range: string display_order: name: display_order description: When rendering information, this attribute to specify the order in which the information should be rendered. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: attribute git_url: name: git_url description: 'Example: https://github.com/microbiomedata/mg_annotation/releases/tag/0.1' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: attribute range: string file_size_bytes: name: file_size_bytes description: Size of the file in bytes - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: attribute range: bytes md5_checksum: name: md5_checksum description: MD5 checksum of file (pre-compressed) - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: attribute range: string abstract: name: abstract description: The abstract of manuscript/grant associated with the entity; i.e., a summary of the resource. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc exact_mappings: - dcterms:abstract range: string @@ -4479,7 +4476,7 @@ slots: name: keywords description: A list of keywords that used to associate the entity. Keywords SHOULD come from controlled vocabularies, including MESH, ENVO. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mappings: - dcterms:subject multivalued: true @@ -4488,7 +4485,7 @@ slots: name: objective description: The scientific objectives associated with the entity. It SHOULD correspond to scientific norms for objectives field in a structured abstract. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mappings: - sio:000337 multivalued: false @@ -4496,95 +4493,95 @@ slots: websites: name: websites description: A list of websites that are associated with the entity. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: true range: string publications: name: publications description: A list of publications that are associated with the entity. The publications SHOULD be given using an identifier, such as a DOI or Pubmed ID, if possible. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: true range: string highest_similarity_score: name: highest_similarity_score description: 'TODO: Yuri to fill in' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: float metabolite_quantified: name: metabolite_quantified description: the specific metabolite identifier - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: ChemicalEntity all_proteins: name: all_proteins description: the list of protein identifiers that are associated with the peptide sequence - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: true range: GeneProduct best_protein: name: best_protein description: the specific protein identifier most correctly associated with the peptide sequence - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: GeneProduct min_q_value: name: min_q_value description: smallest Q-Value associated with the peptide sequence as provided by MSGFPlus tool - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - OBI:0001442 range: float peptide_sequence: name: peptide_sequence - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string peptide_spectral_count: name: peptide_spectral_count description: sum of filter passing MS2 spectra associated with the peptide sequence within a given LC-MS/MS data file - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer peptide_sum_masic_abundance: name: peptide_sum_masic_abundance description: combined MS1 extracted ion chromatograms derived from MS2 spectra associated with the peptide sequence from a given LC-MS/MS data file using the MASIC tool - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer chemical_formula: name: chemical_formula - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc inchi_key: name: inchi_key notes: - 'key set to false due to rare collisions: Pletnev I, Erin A, McNaught A, Blinov K, Tchekhovskoi D, Heller S (2012) InChIKey collision resistance: an experimental testing. J Cheminform. 4:12' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc inchi: name: inchi - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc peptide_sequence_count: name: peptide_sequence_count - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc protein_spectral_count: name: protein_spectral_count - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc protein_sum_masic_abundance: name: protein_sum_masic_abundance - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc smiles: name: smiles - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc started_at_time: name: started_at_time notes: - 'The regex for ISO-8601 format was taken from here: https://www.myintervals.com/blog/2009/05/20/iso-8601-date-validation-that-doesnt-suck/ It may not be complete, but it is good enough for now.' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mappings: - prov:startedAtTime range: datetime @@ -4594,26 +4591,26 @@ slots: notes: - 'The regex for ISO-8601 format was taken from here: https://www.myintervals.com/blog/2009/05/20/iso-8601-date-validation-that-doesnt-suck/ It may not be complete, but it is good enough for now.' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mappings: - prov:endedAtTime range: datetime pattern: ^([\+-]?\d{4}(?!\d{2}\b))((-?)((0[1-9]|1[0-2])(\3([12]\d|0[1-9]|3[01]))?|W([0-4]\d|5[0-2])(-?[1-7])?|(00[1-9]|0[1-9]\d|[12]\d{2}|3([0-5]\d|6[1-6])))([T\s]((([01]\d|2[0-3])((:?)[0-5]\d)?|24\:?00)([\.,]\d+(?!:))?)?(\17[0-5]\d([\.,]\d+)?)?([zZ]|([\+-])([01]\d|2[0-3]):?([0-5]\d)?)?)?)?$ was_informed_by: name: was_informed_by - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mappings: - prov:wasInformedBy range: Activity was_generated_by: name: was_generated_by - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mappings: - prov:wasGeneratedBy range: Activity used: name: used - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mappings: - prov:used domain: Activity @@ -4632,19 +4629,19 @@ slots: examples: - value: nmdc:mgmag-00-x012.1_7_c1 description: https://github.com/microbiomedata/nmdc-schema/pull/499#discussion_r1018499248 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc identifier: true range: uriorcurie required: true name: name: name description: A human readable label for an entity - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string description: name: description description: a human-readable description of a thing - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc slot_uri: dcterms:description range: string type: @@ -4657,7 +4654,7 @@ slots: examples: - value: nmdc:Biosample - value: nmdc:Study - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string title: name: title @@ -4665,7 +4662,7 @@ slots: assigned to it. For example, when extracting study information for GOLD, the GOLD system has assigned a name/label. However, for display purposes, we may also wish the capture the title of the proposal that was used to fund the study. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc exact_mappings: - dcterms:title range: string @@ -4673,7 +4670,7 @@ slots: name: alternative_titles description: A list of alternative titles for the entity. The distinction between title and alternative titles is application-specific. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc exact_mappings: - dcterms:alternative multivalued: true @@ -4682,7 +4679,7 @@ slots: name: alternative_names description: A list of alternative names used to refer to the entity. The distinction between name and alternative names is application-specific. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc exact_mappings: - dcterms:alternative - skos:altLabel @@ -4692,13 +4689,13 @@ slots: name: alternative_descriptions description: A list of alternative descriptions for the entity. The distinction between description and alternative descriptions is application-specific. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: true range: string alternative_identifiers: name: alternative_identifiers description: A list of alternative identifiers for the entity. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: true range: uriorcurie pattern: ^[a-zA-Z_][a-zA-Z0-9_]*:[a-zA-Z_][a-zA-Z0-9_]*$ @@ -4711,7 +4708,7 @@ slots: - We are using string representations of dates until all components of our ecosystem can handle ISO 8610 dates - The date should be formatted as YYYY-MM-DD - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string end_date: name: end_date @@ -4722,19 +4719,19 @@ slots: - We are using string representations of dates until all components of our ecosystem can handle ISO 8610 dates - The date should be formatted as YYYY-MM-DD - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string protocol_link: name: protocol_link - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: Protocol nucleic_acid_concentration: name: nucleic_acid_concentration - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: InstrumentValue biomaterial_purity: name: biomaterial_purity - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: QuantityValue external_database_identifiers: name: external_database_identifiers @@ -4743,7 +4740,7 @@ slots: - had tried ranges of external identifier and string comments: - The value of this field is always a registered CURIE - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc close_mappings: - skos:closeMatch is_a: alternative_identifiers @@ -4760,26 +4757,26 @@ slots: - add is_a or mixin modeling, like other external_database_identifiers - what class would IMG records belong to?! Are they Studies, Biosamples, or something else? - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: external_database_identifiers pattern: ^img\.taxon:[a-zA-Z0-9_][a-zA-Z0-9_\/\.]*$ igsn_identifiers: name: igsn_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixin: true gold_identifiers: name: gold_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://gold.jgi.doe.gov/ mixin: true emsl_identifiers: name: emsl_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixin: true mgnify_identifiers: name: mgnify_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://www.ebi.ac.uk/metagenomics/ mixin: true @@ -4792,7 +4789,7 @@ slots: the initial submission - 'the first letter of the accession indicates which partner accepted the initial submission: E for ENA, D for DDBJ, or S or N for NCBI.' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://www.insdc.org/ - https://ena-docs.readthedocs.io/en/latest/submit/general-guide/accessions.html @@ -4804,30 +4801,30 @@ slots: massive_identifiers: name: massive_identifiers description: identifiers for entities according to MASSIVE - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixin: true neon_identifiers: name: neon_identifiers description: identifiers for entities according to NEON - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixin: true jgi_portal_identifiers: name: jgi_portal_identifiers description: identifiers for entities according to JGI Portal - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixin: true gnps_identifiers: name: gnps_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixin: true study_identifiers: name: study_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: external_database_identifiers abstract: true neon_study_identifiers: name: neon_study_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: study_identifiers mixins: - neon_identifiers @@ -4838,7 +4835,7 @@ slots: - value: https://identifiers.org/insdc.sra:SRP121659 description: Avena fatua rhizosphere microbial communities - H1_Rhizo_Litter_2 metatranscriptome - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://github.com/bioregistry/bioregistry/issues/109 - https://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=studies @@ -4861,7 +4858,7 @@ slots: - value: https://identifiers.org/bioproject:PRJNA366857 description: Avena fatua rhizosphere microbial communities - H1_Rhizo_Litter_2 metatranscriptome - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://www.ncbi.nlm.nih.gov/bioproject/ - https://www.ddbj.nig.ac.jp/bioproject/index-e.html @@ -4880,7 +4877,7 @@ slots: - uses the prefix GS (but possibly in a different case) examples: - value: https://identifiers.org/gold:Gs0110115 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://gold.jgi.doe.gov/studies is_a: study_identifiers @@ -4892,7 +4889,7 @@ slots: description: identifiers for corresponding project in MGnify examples: - value: https://identifiers.org/mgnify.proj:MGYS00005757 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: study_identifiers mixins: - mgnify_identifiers @@ -4908,7 +4905,7 @@ slots: - this identifier was registered with bioregistry but not identifiers.org examples: - value: gnps.task:4b848c342a4f4abc871bdf8a09a60807 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://microbiomedata.github.io/nmdc-schema/MetabolomicsAnalysisActivity/ is_a: study_identifiers @@ -4924,7 +4921,7 @@ slots: - value: MASSIVE:MSV000090886 description: MASSIVE id for MASSIVE's metabolomics analysis of Gb0305843, resolvable with prefix http://identifiers.org/massive/ - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://massive.ucsd.edu/ProteoSAFe/dataset.jsp?task=83574f41458a4b259621d5c32a4d82f9 is_a: study_identifiers @@ -4935,18 +4932,18 @@ slots: name: emsl_project_dois description: A DOI that resolves to a EMSL Research Campaign page. title: EMSL Project DOI - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: study_identifiers mixins: - emsl_identifiers biosample_identifiers: name: biosample_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: external_database_identifiers abstract: true neon_biosample_identifiers: name: neon_biosample_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: biosample_identifiers mixins: - neon_identifiers @@ -4955,7 +4952,7 @@ slots: description: identifiers for corresponding sample in GOLD examples: - value: https://identifiers.org/gold:Gb0312930 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: biosample_identifiers mixins: - gold_identifiers @@ -4968,7 +4965,7 @@ slots: - value: https://identifiers.org/biosample:SAMD00212331 description: I13_N_5-10 sample from Soil fungal diversity along elevational gradients - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://github.com/bioregistry/bioregistry/issues/108 - https://www.ebi.ac.uk/biosamples/ @@ -4993,7 +4990,7 @@ slots: - value: https://identifiers.org/insdc.sra:DRS166340 description: I13_N_5-10 sample from Soil fungal diversity along elevational gradients - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: biosample_identifiers mixins: - insdc_identifiers @@ -5008,7 +5005,7 @@ slots: - removed "planned" once NEXUS is online - make an emsl identifiers mixin - determine real expansion for emsl prefix - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: biosample_identifiers mixins: - emsl_identifiers @@ -5016,13 +5013,13 @@ slots: name: igsn_biosample_identifiers description: A list of identifiers for the biosample from the IGSN database. title: IGSN Biosample Identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: biosample_identifiers mixins: - igsn_identifiers omics_processing_identifiers: name: omics_processing_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: external_database_identifiers abstract: true gold_sequencing_project_identifiers: @@ -5030,21 +5027,21 @@ slots: description: identifiers for corresponding sequencing project in GOLD examples: - value: https://identifiers.org/gold:Gp0108335 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: omics_processing_identifiers mixins: - gold_identifiers pattern: ^GOLD:Gp[0-9]+$ insdc_experiment_identifiers: name: insdc_experiment_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: external_database_identifiers mixins: - insdc_identifiers pattern: ^insdc.sra:(E|D|S)RX[0-9]{6,}$ analysis_identifiers: name: analysis_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: external_database_identifiers abstract: true gold_analysis_project_identifiers: @@ -5052,7 +5049,7 @@ slots: description: identifiers for corresponding analysis project in GOLD examples: - value: https://identifiers.org/gold:Ga0526289 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: analysis_identifiers mixins: - gold_identifiers @@ -5065,7 +5062,7 @@ slots: - value: https://www.ebi.ac.uk/metagenomics/runs/DRR218479 description: Illumina MiSeq paired end sequencing of SAMD00212331 - value: https://www.ebi.ac.uk/ena/browser/view/ERR436051 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: analysis_identifiers mixins: - insdc_identifiers @@ -5077,17 +5074,17 @@ slots: examples: - value: https://www.ebi.ac.uk/metagenomics/analyses/MGYA00002270 description: combined analyses (taxonomic, functional) of sample ERS438107 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: analysis_identifiers mixins: - mgnify_identifiers assembly_identifiers: name: assembly_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc abstract: true insdc_assembly_identifiers: name: insdc_assembly_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: assembly_identifiers mixins: - insdc_identifiers @@ -5095,34 +5092,34 @@ slots: dissolving_activity_set: name: dissolving_activity_set title: dissolving activity set - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: true range: DissolvingActivity inlined_as_list: true material_sample_set: name: material_sample_set title: material sample set - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: true range: MaterialSample inlined_as_list: true material_sampling_activity_set: name: material_sampling_activity_set title: material sampling activity set - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: true range: MaterialSamplingActivity inlined_as_list: true reaction_activity_set: name: reaction_activity_set - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: true range: ReactionActivity inlined_as_list: true dissolution_aided_by: name: dissolution_aided_by title: dissolution aided by - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - shaker range: LabDevice @@ -5130,14 +5127,14 @@ slots: dissolution_reagent: name: dissolution_reagent title: dissolution reagent - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - solvent range: SolventEnum dissolution_volume: name: dissolution_volume title: dissolution volume - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - volume range: QuantityValue @@ -5145,7 +5142,7 @@ slots: dissolved_in: name: dissolved_in title: dissolved in - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - container range: MaterialContainer @@ -5153,24 +5150,24 @@ slots: material_input: name: material_input title: material input - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: MaterialSample material_output: name: material_output title: material output - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: MaterialSample device_type: name: device_type title: device type - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - shaker type range: DeviceTypeEnum activity_speed: name: activity_speed title: activity speed - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - shake_speed range: QuantityValue @@ -5179,13 +5176,13 @@ slots: name: activity_temperature todos: - constrain units - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: QuantityValue inlined: true activity_time: name: activity_time title: activity time - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - shake_time range: QuantityValue @@ -5193,50 +5190,50 @@ slots: container_size: name: container_size title: container size - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: QuantityValue inlined: true container_type: name: container_type title: container type - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: ContainerTypeEnum amount_collected: name: amount_collected title: amount collected - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: QuantityValue inlined: true collected_into: name: collected_into title: collected into - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc sampling_method: name: sampling_method title: sampling method - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: SamplingMethodEnum reaction_aided_by: name: reaction_aided_by title: reaction aided by - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - shaker range: LabDevice inlined: true reaction_temperature: name: reaction_temperature - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc reaction_time: name: reaction_time - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc analysis_type: name: analysis_type description: Select all the data types associated or available for this biosample title: analysis/data type examples: - value: metagenomics; metabolomics; proteomics - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - MIxS:investigation_type rank: 3 @@ -5257,7 +5254,7 @@ slots: to a new vial and generated a new sample)' examples: - value: IGSN:DSJ0284 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 5 string_serialization: '{text}:{text}' multivalued: true @@ -5277,7 +5274,7 @@ slots: are all acceptable. examples: - value: 2021-04-15, 2021-04 and 2021 are all acceptable. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - MIxS:collection_date rank: 2 @@ -5295,7 +5292,7 @@ slots: - 'Time should be entered as HH:MM(:SS) in GMT. See here for a converter: https://www.worldtimebuddy.com/pst-to-gmt-converter' examples: - value: 13:33 or 13:33:55 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - MIxS:collection_date rank: 1 @@ -5314,7 +5311,7 @@ slots: - 'Time should be entered as HH:MM(:SS) in GMT. See here for a converter: https://www.worldtimebuddy.com/pst-to-gmt-converter' examples: - value: 13:33 or 13:33:55 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - MIxS:collection_date rank: 3 @@ -5333,7 +5330,7 @@ slots: data collection template. examples: - value: 'experimental treatment: value' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - MIxS:experimental_factor|additional_info rank: 7 @@ -5349,7 +5346,7 @@ slots: examples: - value: C18 - value: Basix PES, 13-100-106 FisherSci - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - MIxS:filter_type rank: 6 @@ -5368,7 +5365,7 @@ slots: examples: - value: 13C glucose - value: H218O - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - MIxS:chem_administration rank: 16 @@ -5386,7 +5383,7 @@ slots: examples: - value: https://doi.org/10.1016/0038-0717(87)90052-6 - value: https://doi.org/10.1016/0038-0717(87)90052-6 | https://www.sciencedirect.com/science/article/abs/pii/0038071787900526 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - MIxS:micro_biomass_meth rank: 11 @@ -5402,7 +5399,7 @@ slots: examples: - value: https://doi.org/10.1016/0038-0717(87)90052-6 - value: https://doi.org/10.1016/0038-0717(87)90052-6 | https://www.sciencedirect.com/science/article/abs/pii/0038071787900526 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - MIxS:micro_biomass_meth rank: 13 @@ -5418,7 +5415,7 @@ slots: and method are required examples: - value: 0.05 ug C/g dry soil - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - MIxS:microbial_biomass rank: 10 @@ -5434,7 +5431,7 @@ slots: and method are required examples: - value: 0.05 ug N/g dry soil - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - MIxS:microbial_biomass rank: 12 @@ -5448,7 +5445,7 @@ slots: title: non-microbial biomass examples: - value: insect 0.23 ug; plant 1g - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - MIxS:biomass|microbial_biomass rank: 8 @@ -5462,7 +5459,7 @@ slots: - required if "non-microbial biomass" is provided examples: - value: https://doi.org/10.1038/s41467-021-26181-3 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - MIxS:microbial_biomass rank: 9 @@ -5476,7 +5473,7 @@ slots: - required if "org_nitro" is provided examples: - value: https://doi.org/10.1016/0038-0717(85)90144-0 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - MIxS:org_nitro|tot_nitro_cont_meth rank: 14 @@ -5490,7 +5487,7 @@ slots: comments: - This is an open text field to provide any treatments that cannot be captured in the provided slots. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - MIxS:additional_info rank: 15 @@ -5509,7 +5506,7 @@ slots: are all acceptable. examples: - value: 2021-04-15, 2021-04 and 2021 are all acceptable. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - MIxS:collection_date rank: 4 @@ -5527,7 +5524,7 @@ slots: - 'Time should be entered as HH:MM(:SS) in GMT. See here for a converter: https://www.worldtimebuddy.com/pst-to-gmt-converter' examples: - value: 13:33 or 13:33:55 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - MIxS:collection_date rank: 5 @@ -5541,7 +5538,7 @@ slots: - Note DNase treatment is required for all RNA samples. examples: - value: 'no' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 13 slot_group: JGI-Metatranscriptomics range: YesNoEnum @@ -5554,7 +5551,7 @@ slots: values have been pre-filled. examples: - value: '504000' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 19 string_serialization: '{text}' slot_group: JGI-Metatranscriptomics @@ -5567,7 +5564,7 @@ slots: - Recommended value is between 1 and 3. examples: - value: '2.02' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 7 is_a: biomaterial_purity string_serialization: '{float}' @@ -5582,7 +5579,7 @@ slots: - Recommended value is between 1 and 3. examples: - value: '2.02' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 8 is_a: biomaterial_purity string_serialization: '{float}' @@ -5595,7 +5592,7 @@ slots: title: RNA collection site examples: - value: untreated pond water - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 15 string_serialization: '{text}' slot_group: JGI-Metatranscriptomics @@ -5608,7 +5605,7 @@ slots: a fluorometric method. Acceptable values are 0-2000. examples: - value: '100' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - nmdc:nucleic_acid_concentration rank: 5 @@ -5624,7 +5621,7 @@ slots: title: RNA container type examples: - value: plate - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 10 slot_group: JGI-Metatranscriptomics range: JgiContTypeEnum @@ -5640,7 +5637,7 @@ slots: - For partial plates, fill by columns, like B1-G1,A2-H2,A3-D3 (NOT A2-A11,B1-B8). examples: - value: B2 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 11 string_serialization: '{96 well plate pos}' slot_group: JGI-Metatranscriptomics @@ -5654,7 +5651,7 @@ slots: in a plate should have the same plate label. examples: - value: Pond_MT_041618 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 9 string_serialization: '{text < 20 characters}' slot_group: JGI-Metatranscriptomics @@ -5665,7 +5662,7 @@ slots: title: RNA isolation method examples: - value: phenol/chloroform extraction - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 16 string_serialization: '{text}' slot_group: JGI-Metatranscriptomics @@ -5678,7 +5675,7 @@ slots: examples: - value: expected to contain microbes (59%) fungi (30%), viruses (10%), tadpoles (1%) - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 14 string_serialization: '{text}' slot_group: JGI-Metatranscriptomics @@ -5691,7 +5688,7 @@ slots: values have been pre-filled. examples: - value: John Jones - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 18 string_serialization: '{text}' slot_group: JGI-Metatranscriptomics @@ -5704,7 +5701,7 @@ slots: values have been pre-filled. examples: - value: '187654' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 3 string_serialization: '{text}' slot_group: JGI-Metatranscriptomics @@ -5715,7 +5712,7 @@ slots: title: RNA sample format examples: - value: Water - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 12 slot_group: JGI-Metatranscriptomics range: rna_sample_format_enum @@ -5727,7 +5724,7 @@ slots: title: RNA sample name examples: - value: JGI_pond_041618 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 4 string_serialization: '{text}' slot_group: JGI-Metatranscriptomics @@ -5742,7 +5739,7 @@ slots: values have been pre-filled. examples: - value: '1191234' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 1 string_serialization: '{text}' slot_group: JGI-Metatranscriptomics @@ -5755,7 +5752,7 @@ slots: values have been pre-filled. examples: - value: Jane Johnson - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 17 string_serialization: '{text}' slot_group: JGI-Metatranscriptomics @@ -5768,7 +5765,7 @@ slots: values have been pre-filled. examples: - value: JGI Pond metatranscriptomics - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 2 string_serialization: '{text}' slot_group: JGI-Metatranscriptomics @@ -5782,7 +5779,7 @@ slots: has been granted by a project manager examples: - value: '25' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 6 string_serialization: '{float}' slot_group: JGI-Metatranscriptomics @@ -5798,7 +5795,7 @@ slots: - Recommended value is between 1 and 3. examples: - value: '2.02' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 7 is_a: biomaterial_purity string_serialization: '{float}' @@ -5813,7 +5810,7 @@ slots: - Recommended value is between 1 and 3. examples: - value: '2.02' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 8 is_a: biomaterial_purity string_serialization: '{float}' @@ -5826,7 +5823,7 @@ slots: title: DNA collection site examples: - value: untreated pond water - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 15 string_serialization: '{text}' slot_group: JGI-Metagenomics @@ -5839,7 +5836,7 @@ slots: a fluorometric method. Acceptable values are 0-2000. examples: - value: '100' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - nmdc:nucleic_acid_concentration rank: 5 @@ -5855,7 +5852,7 @@ slots: title: DNA container type examples: - value: plate - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 10 slot_group: JGI-Metagenomics range: JgiContTypeEnum @@ -5871,7 +5868,7 @@ slots: - For partial plates, fill by columns, like B1-G1,A2-H2,A3-D3 (NOT A2-A11,B1-B8). examples: - value: B2 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 11 string_serialization: '{96 well plate pos}' slot_group: JGI-Metagenomics @@ -5885,7 +5882,7 @@ slots: in a plate should have the same plate label. examples: - value: Pond_MT_041618 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 9 string_serialization: '{text < 20 characters}' slot_group: JGI-Metagenomics @@ -5897,7 +5894,7 @@ slots: - Note DNase treatment is required for all RNA samples. examples: - value: 'no' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 13 slot_group: JGI-Metagenomics range: YesNoEnum @@ -5908,7 +5905,7 @@ slots: title: DNA isolation method examples: - value: phenol/chloroform extraction - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 16 string_serialization: '{text}' slot_group: JGI-Metagenomics @@ -5921,7 +5918,7 @@ slots: examples: - value: expected to contain microbes (59%) fungi (30%), viruses (10%), tadpoles (1%) - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 14 string_serialization: '{text}' slot_group: JGI-Metagenomics @@ -5934,7 +5931,7 @@ slots: values have been pre-filled. examples: - value: John Jones - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 18 string_serialization: '{text}' slot_group: JGI-Metagenomics @@ -5951,7 +5948,7 @@ slots: values have been pre-filled. examples: - value: '187654' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 3 string_serialization: '{text}' slot_group: JGI-Metagenomics @@ -5962,7 +5959,7 @@ slots: title: DNA sample format examples: - value: Water - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 12 slot_group: JGI-Metagenomics range: dna_sample_format_enum @@ -5974,7 +5971,7 @@ slots: title: DNA sample name examples: - value: JGI_pond_041618 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 4 string_serialization: '{text}' slot_group: JGI-Metagenomics @@ -5987,7 +5984,7 @@ slots: values have been pre-filled. examples: - value: '1191234' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 1 string_serialization: '{text}' slot_group: JGI-Metagenomics @@ -6000,7 +5997,7 @@ slots: values have been pre-filled. examples: - value: Jane Johnson - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 17 string_serialization: '{text}' slot_group: JGI-Metagenomics @@ -6013,7 +6010,7 @@ slots: values have been pre-filled. examples: - value: JGI Pond metagenomics - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 2 string_serialization: '{text}' slot_group: JGI-Metagenomics @@ -6027,7 +6024,7 @@ slots: has been granted by a project manager examples: - value: '25' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 6 string_serialization: '{float}' slot_group: JGI-Metagenomics @@ -6043,7 +6040,7 @@ slots: values have been pre-filled. examples: - value: '504000' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 19 string_serialization: '{text}' slot_group: JGI-Metagenomics @@ -6059,7 +6056,7 @@ slots: - Enter a temperature in celsius. Numeric portion only. examples: - value: '-80' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 4 string_serialization: '{float}' slot_group: EMSL @@ -6068,7 +6065,7 @@ slots: name: project_id description: Proposal IDs or names associated with dataset title: project ID - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 1 string_serialization: '{text}' slot_group: EMSL @@ -6079,7 +6076,7 @@ slots: title: replicate number comments: - This will guide staff in ensuring your samples are blocked & randomized correctly - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 6 string_serialization: '{integer}' slot_group: EMSL @@ -6096,7 +6093,7 @@ slots: - value: 15 g - value: 100 uL - value: 5 mL - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 3 string_serialization: '{float} {unit}' slot_group: EMSL @@ -6109,7 +6106,7 @@ slots: - This can vary from 'environmental package' if the sample is an extraction. examples: - value: water extracted soil - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 2 slot_group: EMSL range: sample_type_enum @@ -6124,7 +6121,7 @@ slots: to EMSL for analyses. examples: - value: '2' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc rank: 5 string_serialization: '{integer}' slot_group: EMSL @@ -6146,7 +6143,7 @@ slots: title: absolute air humidity examples: - value: 9 gram per gram - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - absolute air humidity is_a: core field @@ -6169,7 +6166,7 @@ slots: title: secondary and tertiary recovery methods and start date examples: - value: Polymer Addition;2018-06-21T14:30Z - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - secondary and tertiary recovery methods and start date is_a: core field @@ -6190,7 +6187,7 @@ slots: title: additional info examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - additional info is_a: core field @@ -6211,7 +6208,7 @@ slots: title: address examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - address is_a: core field @@ -6233,7 +6230,7 @@ slots: title: adjacent rooms examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - adjacent rooms is_a: core field @@ -6256,7 +6253,7 @@ slots: title: aerospace structure examples: - value: plane - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - aerospace structure is_a: core field @@ -6280,7 +6277,7 @@ slots: title: history/agrochemical additions examples: - value: roundup;5 milligram per liter;2018-06-21 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - history/agrochemical additions is_a: core field @@ -6306,7 +6303,7 @@ slots: title: air particulate matter concentration examples: - value: PM2.5;10 microgram per cubic meter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - air particulate matter concentration is_a: core field @@ -6330,7 +6327,7 @@ slots: title: air temperature examples: - value: 20 degree Celsius - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - air temperature is_a: core field @@ -6356,7 +6353,7 @@ slots: title: air temperature regimen examples: - value: 25 degree Celsius;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - air temperature regimen is_a: core field @@ -6380,7 +6377,7 @@ slots: title: extreme_unusual_properties/Al saturation examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - extreme_unusual_properties/Al saturation is_a: core field @@ -6400,7 +6397,7 @@ slots: title: extreme_unusual_properties/Al saturation method examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - extreme_unusual_properties/Al saturation method is_a: core field @@ -6425,7 +6422,7 @@ slots: title: alkalinity examples: - value: 50 milligram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - alkalinity is_a: core field @@ -6445,7 +6442,7 @@ slots: title: alkalinity method examples: - value: titration - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - alkalinity method is_a: core field @@ -6469,7 +6466,7 @@ slots: title: alkyl diethers examples: - value: 0.005 mole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - alkyl diethers is_a: core field @@ -6491,7 +6488,7 @@ slots: title: altitude examples: - value: 100 meter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - altitude is_a: environment field @@ -6514,7 +6511,7 @@ slots: title: aminopeptidase activity examples: - value: 0.269 mole per liter per hour - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - aminopeptidase activity is_a: core field @@ -6537,7 +6534,7 @@ slots: title: ammonium examples: - value: 1.5 milligram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - ammonium is_a: core field @@ -6561,7 +6558,7 @@ slots: title: amount of light examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - amount of light is_a: core field @@ -6583,7 +6580,7 @@ slots: title: ancestral data examples: - value: A/3*B - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - ancestral data is_a: core field @@ -6608,7 +6605,7 @@ slots: title: mean annual precipitation examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - mean annual precipitation is_a: core field @@ -6631,7 +6628,7 @@ slots: title: mean annual temperature examples: - value: 12.5 degree Celsius - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - mean annual temperature is_a: core field @@ -6658,7 +6655,7 @@ slots: title: antibiotic regimen examples: - value: penicillin;5 milligram;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - antibiotic regimen is_a: core field @@ -6684,7 +6681,7 @@ slots: title: API gravity examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - API gravity is_a: core field @@ -6705,7 +6702,7 @@ slots: title: architectural structure examples: - value: shed - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - architectural structure is_a: core field @@ -6732,7 +6729,7 @@ slots: title: aromatics wt% examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - aromatics wt% is_a: core field @@ -6760,7 +6757,7 @@ slots: title: asphaltenes wt% examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - asphaltenes wt% is_a: core field @@ -6781,7 +6778,7 @@ slots: title: atmospheric data examples: - value: wind speed;9 knots - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - atmospheric data is_a: core field @@ -6806,7 +6803,7 @@ slots: title: average dew point examples: - value: 25.5 degree Celsius - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - average dew point is_a: core field @@ -6827,7 +6824,7 @@ slots: title: average daily occupancy examples: - value: '2' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - average daily occupancy is_a: core field @@ -6851,7 +6848,7 @@ slots: title: average temperature examples: - value: 12.5 degree Celsius - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - average temperature is_a: core field @@ -6874,7 +6871,7 @@ slots: title: bacterial production examples: - value: 5 milligram per cubic meter per day - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - bacterial production is_a: core field @@ -6897,7 +6894,7 @@ slots: title: bacterial respiration examples: - value: 300 micromole oxygen per liter per hour - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - bacterial respiration is_a: core field @@ -6920,7 +6917,7 @@ slots: title: bacterial carbon production examples: - value: 2.53 microgram per liter per hour - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - bacterial carbon production is_a: core field @@ -6944,7 +6941,7 @@ slots: title: barometric pressure examples: - value: 5 millibar - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - barometric pressure is_a: core field @@ -6964,7 +6961,7 @@ slots: title: basin name examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - basin name is_a: core field @@ -6985,7 +6982,7 @@ slots: title: bathroom count examples: - value: '1' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - bathroom count is_a: core field @@ -7005,7 +7002,7 @@ slots: title: bedroom count examples: - value: '2' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - bedroom count is_a: core field @@ -7028,7 +7025,7 @@ slots: title: benzene examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - benzene is_a: core field @@ -7053,7 +7050,7 @@ slots: title: biochemical oxygen demand examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - biochemical oxygen demand is_a: core field @@ -7074,7 +7071,7 @@ slots: title: biocide administration examples: - value: ALPHA 1427;Baker Hughes;2008-01-23 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - biocide administration is_a: core field @@ -7100,7 +7097,7 @@ slots: title: biocide administration method examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - biocide administration method is_a: core field @@ -7121,7 +7118,7 @@ slots: title: biological status examples: - value: natural - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - biological status is_a: core field @@ -7145,7 +7142,7 @@ slots: title: biomass examples: - value: total;20 gram - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - biomass is_a: core field @@ -7167,7 +7164,7 @@ slots: title: biotic regimen examples: - value: sample inoculated with Rhizobium spp. Culture - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - biotic regimen is_a: core field @@ -7188,7 +7185,7 @@ slots: title: observed biotic relationship examples: - value: free living - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - observed biotic relationship is_a: nucleic acid sequence source field @@ -7211,7 +7208,7 @@ slots: title: bishomohopanol examples: - value: 14 microgram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - bishomohopanol is_a: core field @@ -7234,7 +7231,7 @@ slots: title: host blood pressure diastolic examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host blood pressure diastolic is_a: core field @@ -7257,7 +7254,7 @@ slots: title: host blood pressure systolic examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host blood pressure systolic is_a: core field @@ -7280,7 +7277,7 @@ slots: title: bromide examples: - value: 0.05 parts per million - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - bromide is_a: core field @@ -7300,7 +7297,7 @@ slots: title: design, construction, and operation documents examples: - value: maintenance plans - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - design, construction, and operation documents is_a: core field @@ -7321,7 +7318,7 @@ slots: title: building occupancy type examples: - value: market - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - building occupancy type is_a: core field @@ -7341,7 +7338,7 @@ slots: title: building setting examples: - value: rural - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - building setting is_a: core field @@ -7364,7 +7361,7 @@ slots: title: built structure age examples: - value: '15' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - built structure age is_a: core field @@ -7385,7 +7382,7 @@ slots: title: built structure setting examples: - value: rural - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - built structure setting is_a: core field @@ -7407,7 +7404,7 @@ slots: title: built structure type examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - built structure type is_a: core field @@ -7431,7 +7428,7 @@ slots: title: calcium examples: - value: 0.2 micromole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - calcium is_a: core field @@ -7454,7 +7451,7 @@ slots: title: carbon dioxide examples: - value: 410 parts per million - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - carbon dioxide is_a: core field @@ -7477,7 +7474,7 @@ slots: title: carbon monoxide examples: - value: 0.1 parts per million - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - carbon monoxide is_a: core field @@ -7497,7 +7494,7 @@ slots: title: carbon/nitrogen ratio examples: - value: '0.417361111' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - carbon/nitrogen ratio is_a: core field @@ -7520,7 +7517,7 @@ slots: title: ceiling area examples: - value: 25 square meter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - ceiling area is_a: core field @@ -7541,7 +7538,7 @@ slots: title: ceiling condition examples: - value: damaged - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - ceiling condition is_a: core field @@ -7561,7 +7558,7 @@ slots: title: ceiling finish material examples: - value: stucco - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - ceiling finish material is_a: core field @@ -7581,7 +7578,7 @@ slots: title: ceiling structure examples: - value: concrete - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - ceiling structure is_a: core field @@ -7602,7 +7599,7 @@ slots: title: ceiling texture examples: - value: popcorn - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - ceiling texture is_a: core field @@ -7628,7 +7625,7 @@ slots: title: ceiling thermal mass examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - ceiling thermal mass is_a: core field @@ -7648,7 +7645,7 @@ slots: title: ceiling type examples: - value: coffered - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - ceiling type is_a: core field @@ -7668,7 +7665,7 @@ slots: title: ceiling signs of water/mold examples: - value: presence of mold visible - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - ceiling signs of water/mold is_a: core field @@ -7692,7 +7689,7 @@ slots: title: chemical administration examples: - value: agar [CHEBI:2509];2018-05-11T20:00Z - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - chemical administration is_a: core field @@ -7719,7 +7716,7 @@ slots: title: chemical mutagen examples: - value: nitrous acid;0.5 milligram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - chemical mutagen is_a: core field @@ -7745,7 +7742,7 @@ slots: title: chemical oxygen demand examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - chemical oxygen demand is_a: core field @@ -7770,7 +7767,7 @@ slots: title: chemical treatment method examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - chemical treatment method is_a: core field @@ -7795,7 +7792,7 @@ slots: title: chemical treatment examples: - value: ACCENT 1125;DOW;2010-11-17 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - chemical treatment is_a: core field @@ -7815,7 +7812,7 @@ slots: title: chimera check software examples: - value: uchime;v4.1;default parameters - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - chimera check software is_a: sequencing field @@ -7839,7 +7836,7 @@ slots: title: chloride examples: - value: 5000 milligram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - chloride is_a: core field @@ -7862,7 +7859,7 @@ slots: title: chlorophyll examples: - value: 5 milligram per cubic meter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - chlorophyll is_a: core field @@ -7885,7 +7882,7 @@ slots: title: climate environment examples: - value: tropical climate;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - climate environment is_a: core field @@ -7906,7 +7903,7 @@ slots: title: collection date examples: - value: 2018-05-11T10:00:00+01:00; 2018-05-11 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - collection date is_a: environment field @@ -7929,7 +7926,7 @@ slots: title: conductivity examples: - value: 10 milliSiemens per centimeter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - conductivity is_a: core field @@ -7949,7 +7946,7 @@ slots: title: cooling system identifier examples: - value: '12345' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - cooling system identifier is_a: core field @@ -7969,7 +7966,7 @@ slots: title: history/crop rotation examples: - value: yes;R2/2017-01-01/2018-12-31/P6M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - history/crop rotation is_a: core field @@ -7993,7 +7990,7 @@ slots: title: culture rooting medium examples: - value: http://himedialabs.com/TD/PT158.pdf - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - culture rooting medium is_a: core field @@ -8014,7 +8011,7 @@ slots: title: current land use examples: - value: conifers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - current land use is_a: core field @@ -8035,7 +8032,7 @@ slots: title: current vegetation examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - current vegetation is_a: core field @@ -8056,7 +8053,7 @@ slots: title: current vegetation method examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - current vegetation method is_a: core field @@ -8077,7 +8074,7 @@ slots: title: date last rain examples: - value: 2018-05-11:T14:30Z - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - date last rain is_a: core field @@ -8101,7 +8098,7 @@ slots: title: density examples: - value: 1000 kilogram per cubic meter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - density is_a: core field @@ -8122,7 +8119,7 @@ slots: title: depositional environment examples: - value: Continental - Alluvial - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - depositional environment is_a: core field @@ -8141,7 +8138,7 @@ slots: title: depth examples: - value: 10 meter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - depth is_a: environment field @@ -8165,7 +8162,7 @@ slots: title: dew point examples: - value: 22 degree Celsius - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - dew point is_a: core field @@ -8189,7 +8186,7 @@ slots: title: diether lipids examples: - value: 0.2 nanogram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - diether lipids is_a: core field @@ -8214,7 +8211,7 @@ slots: title: dissolved carbon dioxide examples: - value: 5 milligram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - dissolved carbon dioxide is_a: core field @@ -8237,7 +8234,7 @@ slots: title: dissolved hydrogen examples: - value: 0.3 micromole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - dissolved hydrogen is_a: core field @@ -8261,7 +8258,7 @@ slots: title: dissolved inorganic carbon examples: - value: 2059 micromole per kilogram - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - dissolved inorganic carbon is_a: core field @@ -8284,7 +8281,7 @@ slots: title: dissolved inorganic nitrogen examples: - value: 761 micromole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - dissolved inorganic nitrogen is_a: core field @@ -8307,7 +8304,7 @@ slots: title: dissolved inorganic phosphorus examples: - value: 56.5 micromole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - dissolved inorganic phosphorus is_a: core field @@ -8330,7 +8327,7 @@ slots: title: dissolved iron examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - dissolved iron is_a: core field @@ -8354,7 +8351,7 @@ slots: title: dissolved organic carbon examples: - value: 197 micromole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - dissolved organic carbon is_a: core field @@ -8378,7 +8375,7 @@ slots: title: dissolved organic nitrogen examples: - value: 0.05 micromole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - dissolved organic nitrogen is_a: core field @@ -8401,7 +8398,7 @@ slots: title: dissolved oxygen examples: - value: 175 micromole per kilogram - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - dissolved oxygen is_a: core field @@ -8425,7 +8422,7 @@ slots: title: dissolved oxygen in fluids examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - dissolved oxygen in fluids is_a: core field @@ -8445,7 +8442,7 @@ slots: title: door type, composite examples: - value: revolving - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - door type, composite is_a: core field @@ -8465,7 +8462,7 @@ slots: title: door condition examples: - value: new - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - door condition is_a: core field @@ -8485,7 +8482,7 @@ slots: title: door direction of opening examples: - value: inward - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - door direction of opening is_a: core field @@ -8505,7 +8502,7 @@ slots: title: door location examples: - value: north - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - door location is_a: core field @@ -8525,7 +8522,7 @@ slots: title: door material examples: - value: wood - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - door material is_a: core field @@ -8545,7 +8542,7 @@ slots: title: door movement examples: - value: swinging - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - door movement is_a: core field @@ -8568,7 +8565,7 @@ slots: title: door area or size examples: - value: 2.5 square meter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - door area or size is_a: core field @@ -8588,7 +8585,7 @@ slots: title: door type examples: - value: wooden - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - door type is_a: core field @@ -8608,7 +8605,7 @@ slots: title: door type, metal examples: - value: hollow - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - door type, metal is_a: core field @@ -8628,7 +8625,7 @@ slots: title: door type, wood examples: - value: battened - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - door type, wood is_a: core field @@ -8648,7 +8645,7 @@ slots: title: door signs of water/mold examples: - value: presence of mold visible - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - door signs of water/mold is_a: core field @@ -8674,7 +8671,7 @@ slots: title: downward PAR examples: - value: 28.71 microEinstein per square meter per second - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - downward PAR is_a: core field @@ -8694,7 +8691,7 @@ slots: title: drainage classification examples: - value: well - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - drainage classification is_a: core field @@ -8715,7 +8712,7 @@ slots: title: drawings examples: - value: sketch - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - drawings is_a: core field @@ -8738,7 +8735,7 @@ slots: title: efficiency percent examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - efficiency percent is_a: core field @@ -8758,7 +8755,7 @@ slots: title: elevation examples: - value: 100 meter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - elevation is_a: environment field @@ -8778,7 +8775,7 @@ slots: title: elevator count examples: - value: '2' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - elevator count is_a: core field @@ -8803,7 +8800,7 @@ slots: title: emulsions examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - emulsions is_a: core field @@ -8828,7 +8825,7 @@ slots: examples: - value: oceanic epipelagic zone biome [ENVO:01000033] for annotating a water sample from the photic zone in middle of the Atlantic Ocean - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - broad-scale environmental context is_a: environment field @@ -8855,7 +8852,7 @@ slots: various vegetation layers in a forest consider: canopy [ENVO:00000047]|herb and fern layer [ENVO:01000337]|litter layer [ENVO:01000338]|understory [01000335]|shrub layer [ENVO:01000336].' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - local environmental context is_a: environment field @@ -8882,7 +8879,7 @@ slots: - value: 'soil [ENVO:00001998]; Annotating a fish swimming in the upper 100 m of the Atlantic Ocean, consider: ocean water [ENVO:00002151]. Example: Annotating a duck on a pond consider: pond water [ENVO:00002228]|air [ENVO_00002005]' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - environmental medium is_a: environment field @@ -8903,7 +8900,7 @@ slots: title: escalator count examples: - value: '4' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - escalator count is_a: core field @@ -8926,7 +8923,7 @@ slots: title: ethylbenzene examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - ethylbenzene is_a: core field @@ -8949,7 +8946,7 @@ slots: title: exposed ductwork examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - exposed ductwork is_a: core field @@ -8969,7 +8966,7 @@ slots: title: exposed pipes examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - exposed pipes is_a: core field @@ -8991,7 +8988,7 @@ slots: title: experimental factor examples: - value: time series design [EFO:EFO_0001779] - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - experimental factor is_a: investigation field @@ -9012,7 +9009,7 @@ slots: title: exterior door count examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - exterior door count is_a: core field @@ -9032,7 +9029,7 @@ slots: title: orientations of exterior wall examples: - value: northwest - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - orientations of exterior wall is_a: core field @@ -9052,7 +9049,7 @@ slots: title: orientations of exterior window examples: - value: southwest - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - orientations of exterior window is_a: core field @@ -9072,7 +9069,7 @@ slots: title: history/extreme events examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - history/extreme events is_a: core field @@ -9093,7 +9090,7 @@ slots: title: soil_taxonomic/FAO classification examples: - value: Luvisols - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - soil_taxonomic/FAO classification is_a: core field @@ -9120,7 +9117,7 @@ slots: title: fertilizer regimen examples: - value: urea;0.6 milligram per liter;R2/2018-05-11:T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - fertilizer regimen is_a: core field @@ -9141,7 +9138,7 @@ slots: title: field name examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - field name is_a: core field @@ -9162,7 +9159,7 @@ slots: title: filter type examples: - value: HEPA - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - filter type is_a: core field @@ -9182,7 +9179,7 @@ slots: title: history/fire examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - history/fire is_a: core field @@ -9202,7 +9199,7 @@ slots: title: fireplace type examples: - value: wood burning - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - fireplace type is_a: core field @@ -9223,7 +9220,7 @@ slots: title: history/flooding examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - history/flooding is_a: core field @@ -9246,7 +9243,7 @@ slots: title: floor age examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - floor age is_a: core field @@ -9269,7 +9266,7 @@ slots: title: floor area examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - floor area is_a: core field @@ -9290,7 +9287,7 @@ slots: title: floor condition examples: - value: new - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - floor condition is_a: core field @@ -9311,7 +9308,7 @@ slots: title: floor count examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - floor count is_a: core field @@ -9331,7 +9328,7 @@ slots: title: floor finish material examples: - value: carpet - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - floor finish material is_a: core field @@ -9352,7 +9349,7 @@ slots: title: floor structure examples: - value: concrete - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - floor structure is_a: core field @@ -9375,7 +9372,7 @@ slots: title: floor thermal mass examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - floor thermal mass is_a: core field @@ -9395,7 +9392,7 @@ slots: title: floor signs of water/mold examples: - value: ceiling discoloration - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - floor signs of water/mold is_a: core field @@ -9418,7 +9415,7 @@ slots: title: fluorescence examples: - value: 2.5 volts - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - fluorescence is_a: core field @@ -9439,7 +9436,7 @@ slots: title: frequency of cleaning examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - frequency of cleaning is_a: core field @@ -9459,7 +9456,7 @@ slots: title: frequency of cooking examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - frequency of cooking is_a: core field @@ -9485,7 +9482,7 @@ slots: title: fungicide regimen examples: - value: bifonazole;1 mole per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - fungicide regimen is_a: core field @@ -9506,7 +9503,7 @@ slots: title: furniture examples: - value: chair - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - furniture is_a: core field @@ -9532,7 +9529,7 @@ slots: title: gaseous environment examples: - value: nitric oxide;0.5 micromole per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - gaseous environment is_a: core field @@ -9557,7 +9554,7 @@ slots: title: gaseous substances examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - gaseous substances is_a: core field @@ -9578,7 +9575,7 @@ slots: title: gender of restroom examples: - value: male - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - gender of restroom is_a: core field @@ -9601,7 +9598,7 @@ slots: title: genetic modification examples: - value: aox1A transgenic - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - genetic modification is_a: core field @@ -9623,7 +9620,7 @@ slots: title: geographic location (country and/or sea,region) examples: - value: 'USA: Maryland, Bethesda' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - geographic location (country and/or sea,region) is_a: environment field @@ -9647,7 +9644,7 @@ slots: title: glucosidase activity examples: - value: 5 mol per liter per hour - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - glucosidase activity is_a: core field @@ -9668,7 +9665,7 @@ slots: title: gravidity examples: - value: yes;due date:2018-05-11 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - gravidity is_a: core field @@ -9696,7 +9693,7 @@ slots: title: gravity examples: - value: 12 g;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - gravity is_a: core field @@ -9719,7 +9716,7 @@ slots: title: growth facility examples: - value: Growth chamber [CO_715:0000189] - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - growth facility is_a: core field @@ -9740,7 +9737,7 @@ slots: title: growth habit examples: - value: spreading - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - growth habit is_a: core field @@ -9767,7 +9764,7 @@ slots: title: growth hormone regimen examples: - value: abscisic acid;0.5 milligram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - growth hormone regimen is_a: core field @@ -9788,7 +9785,7 @@ slots: title: hallway/corridor count examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - hallway/corridor count is_a: core field @@ -9808,7 +9805,7 @@ slots: title: handidness examples: - value: right handedness - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - handidness is_a: core field @@ -9829,7 +9826,7 @@ slots: title: hydrocarbon type produced examples: - value: Gas - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - hydrocarbon type produced is_a: core field @@ -9855,7 +9852,7 @@ slots: title: hydrocarbon resource type examples: - value: Oil Sand - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - hydrocarbon resource type is_a: core field @@ -9879,7 +9876,7 @@ slots: title: formation water salinity examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - formation water salinity is_a: core field @@ -9900,7 +9897,7 @@ slots: title: hydrocarbon resource geological age examples: - value: Silurian - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - hydrocarbon resource geological age is_a: core field @@ -9923,7 +9920,7 @@ slots: title: hydrocarbon resource original pressure examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - hydrocarbon resource original pressure is_a: core field @@ -9947,7 +9944,7 @@ slots: title: hydrocarbon resource original temperature examples: - value: 150-295 degree Celsius - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - hydrocarbon resource original temperature is_a: core field @@ -9968,7 +9965,7 @@ slots: title: heating and cooling system type examples: - value: heat pump - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - heating and cooling system type is_a: core field @@ -9988,7 +9985,7 @@ slots: title: heating delivery locations examples: - value: north - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - heating delivery locations is_a: core field @@ -10008,7 +10005,7 @@ slots: title: heating system delivery method examples: - value: radiant - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - heating system delivery method is_a: core field @@ -10029,7 +10026,7 @@ slots: title: heating system identifier examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - heating system identifier is_a: core field @@ -10053,7 +10050,7 @@ slots: title: extreme_unusual_properties/heavy metals examples: - value: mercury;0.09 micrograms per gram - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - extreme_unusual_properties/heavy metals is_a: core field @@ -10074,7 +10071,7 @@ slots: title: extreme_unusual_properties/heavy metals method examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - extreme_unusual_properties/heavy metals method is_a: core field @@ -10098,7 +10095,7 @@ slots: title: height carpet fiber mat examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - height carpet fiber mat is_a: core field @@ -10125,7 +10122,7 @@ slots: title: herbicide regimen examples: - value: atrazine;10 milligram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - herbicide regimen is_a: core field @@ -10146,7 +10143,7 @@ slots: title: soil horizon method examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - soil horizon method is_a: core field @@ -10171,7 +10168,7 @@ slots: title: host age examples: - value: 10 days - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host age is_a: core field @@ -10191,7 +10188,7 @@ slots: title: host body habitat examples: - value: nasopharynx - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host body habitat is_a: core field @@ -10215,7 +10212,7 @@ slots: title: host body product examples: - value: Portion of mucus [fma66938] - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host body product is_a: core field @@ -10239,7 +10236,7 @@ slots: title: host body site examples: - value: gill [UBERON:0002535] - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host body site is_a: core field @@ -10263,7 +10260,7 @@ slots: title: host body temperature examples: - value: 15 degree Celsius - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host body temperature is_a: core field @@ -10283,7 +10280,7 @@ slots: title: host color examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host color is_a: core field @@ -10304,7 +10301,7 @@ slots: title: host common name examples: - value: human - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host common name is_a: core field @@ -10326,7 +10323,7 @@ slots: title: host diet examples: - value: herbivore - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host diet is_a: core field @@ -10350,7 +10347,7 @@ slots: title: host dry mass examples: - value: 500 gram - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host dry mass is_a: core field @@ -10371,7 +10368,7 @@ slots: title: host family relationship examples: - value: offspring;Mussel25 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host family relationship is_a: core field @@ -10392,7 +10389,7 @@ slots: title: host genotype examples: - value: C57BL/6 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host genotype is_a: core field @@ -10413,7 +10410,7 @@ slots: title: host growth conditions examples: - value: https://academic.oup.com/icesjms/article/68/2/349/617247 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host growth conditions is_a: core field @@ -10437,7 +10434,7 @@ slots: title: host height examples: - value: 0.1 meter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host height is_a: core field @@ -10458,7 +10455,7 @@ slots: title: host last meal examples: - value: corn feed;P2H - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host last meal is_a: core field @@ -10482,7 +10479,7 @@ slots: title: host length examples: - value: 1 meter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host length is_a: core field @@ -10502,7 +10499,7 @@ slots: title: host life stage examples: - value: adult - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host life stage is_a: core field @@ -10525,7 +10522,7 @@ slots: title: host phenotype examples: - value: elongated [PATO:0001154] - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host phenotype is_a: core field @@ -10546,7 +10543,7 @@ slots: title: host sex examples: - value: non-binary - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host sex is_a: core field @@ -10566,7 +10563,7 @@ slots: title: host shape examples: - value: round - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host shape is_a: core field @@ -10587,7 +10584,7 @@ slots: title: host subject id examples: - value: MPI123 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host subject id is_a: core field @@ -10613,7 +10610,7 @@ slots: title: host subspecific genetic lineage examples: - value: 'serovar:Newport, variety:glabrum, cultivar: Red Delicious' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host subspecific genetic lineage is_a: core field @@ -10634,7 +10631,7 @@ slots: title: host substrate examples: - value: rock - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host substrate is_a: core field @@ -10656,7 +10653,7 @@ slots: title: observed host symbionts examples: - value: flukeworms - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - observed host symbionts is_a: core field @@ -10677,7 +10674,7 @@ slots: title: host taxid comments: - Homo sapiens [NCBITaxon:9606] would be a reasonable has_raw_value - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host taxid is_a: core field @@ -10700,7 +10697,7 @@ slots: title: host total mass examples: - value: 2500 gram - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host total mass is_a: core field @@ -10723,7 +10720,7 @@ slots: title: host wet mass examples: - value: 1500 gram - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - host wet mass is_a: core field @@ -10746,7 +10743,7 @@ slots: title: humidity examples: - value: 25 gram per cubic meter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - humidity is_a: core field @@ -10773,7 +10770,7 @@ slots: title: humidity regimen examples: - value: 25 gram per cubic meter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - humidity regimen is_a: core field @@ -10795,7 +10792,7 @@ slots: title: indoor space examples: - value: foyer - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - indoor space is_a: core field @@ -10815,7 +10812,7 @@ slots: title: indoor surface examples: - value: wall - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - indoor surface is_a: core field @@ -10839,7 +10836,7 @@ slots: title: industrial effluent percent examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - industrial effluent percent is_a: core field @@ -10863,7 +10860,7 @@ slots: title: inorganic particles examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - inorganic particles is_a: core field @@ -10887,7 +10884,7 @@ slots: title: inside lux light examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - inside lux light is_a: core field @@ -10908,7 +10905,7 @@ slots: title: interior wall condition examples: - value: damaged - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - interior wall condition is_a: core field @@ -10929,7 +10926,7 @@ slots: title: injection water breakthrough date of specific well examples: - value: '2018-05-11' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - injection water breakthrough date of specific well is_a: core field @@ -10953,7 +10950,7 @@ slots: title: injection water fraction examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - injection water fraction is_a: core field @@ -10973,7 +10970,7 @@ slots: title: last time swept/mopped/vacuumed examples: - value: 2018-05-11:T14:30Z - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - last time swept/mopped/vacuumed is_a: core field @@ -10991,7 +10988,7 @@ slots: title: geographic location (latitude and longitude) examples: - value: 50.586825 6.408977 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - geographic location (latitude and longitude) is_a: environment field @@ -11015,7 +11012,7 @@ slots: title: light intensity examples: - value: 0.3 lux - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - light intensity is_a: core field @@ -11039,7 +11036,7 @@ slots: title: light regimen examples: - value: incandescant light;10 lux;450 nanometer - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - light regimen is_a: core field @@ -11063,7 +11060,7 @@ slots: title: light type examples: - value: desk lamp - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - light type is_a: core field @@ -11083,7 +11080,7 @@ slots: title: links to additional analysis examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - links to additional analysis is_a: core field @@ -11104,7 +11101,7 @@ slots: title: link to classification information examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - link to classification information is_a: core field @@ -11125,7 +11122,7 @@ slots: title: link to climate information examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - link to climate information is_a: core field @@ -11147,7 +11144,7 @@ slots: title: lithology examples: - value: Volcanic - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - lithology is_a: core field @@ -11167,7 +11164,7 @@ slots: title: soil_taxonomic/local classification examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - soil_taxonomic/local classification is_a: core field @@ -11188,7 +11185,7 @@ slots: title: soil_taxonomic/local classification method examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - soil_taxonomic/local classification method is_a: core field @@ -11213,7 +11210,7 @@ slots: title: magnesium examples: - value: 52.8 micromole per kilogram - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - magnesium is_a: core field @@ -11233,7 +11230,7 @@ slots: title: maximum occupancy examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - maximum occupancy is_a: core field @@ -11256,7 +11253,7 @@ slots: title: mean friction velocity examples: - value: 0.5 meter per second - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - mean friction velocity is_a: core field @@ -11279,7 +11276,7 @@ slots: title: mean peak friction velocity examples: - value: 1 meter per second - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - mean peak friction velocity is_a: core field @@ -11299,7 +11296,7 @@ slots: title: mechanical structure examples: - value: elevator - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - mechanical structure is_a: core field @@ -11320,7 +11317,7 @@ slots: title: mechanical damage examples: - value: pruning;bark - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - mechanical damage is_a: core field @@ -11344,7 +11341,7 @@ slots: title: methane examples: - value: 1800 parts per billion - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - methane is_a: core field @@ -11364,7 +11361,7 @@ slots: title: microbial biomass method examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - microbial biomass method is_a: core field @@ -11390,7 +11387,7 @@ slots: title: microbial biomass examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - microbial biomass is_a: core field @@ -11418,7 +11415,7 @@ slots: title: mineral nutrient regimen examples: - value: potassium;15 gram;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - mineral nutrient regimen is_a: core field @@ -11440,7 +11437,7 @@ slots: title: miscellaneous parameter examples: - value: Bicarbonate ion concentration;2075 micromole per kilogram - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - miscellaneous parameter is_a: core field @@ -11464,7 +11461,7 @@ slots: title: n-alkanes examples: - value: n-hexadecane;100 milligram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - n-alkanes is_a: core field @@ -11488,7 +11485,7 @@ slots: title: nitrate examples: - value: 65 micromole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - nitrate is_a: core field @@ -11511,7 +11508,7 @@ slots: title: nitrite examples: - value: 0.5 micromole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - nitrite is_a: core field @@ -11534,7 +11531,7 @@ slots: title: nitrogen examples: - value: 4.2 micromole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - nitrogen is_a: core field @@ -11562,7 +11559,7 @@ slots: title: non-mineral nutrient regimen examples: - value: carbon dioxide;10 mole per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - non-mineral nutrient regimen is_a: core field @@ -11582,7 +11579,7 @@ slots: title: nucleic acid amplification examples: - value: https://phylogenomics.me/protocols/16s-pcr-protocol/ - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - nucleic acid amplification is_a: sequencing field @@ -11602,7 +11599,7 @@ slots: title: nucleic acid extraction examples: - value: https://mobio.com/media/wysiwyg/pdfs/protocols/12888.pdf - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - nucleic acid extraction is_a: sequencing field @@ -11623,7 +11620,7 @@ slots: title: number of pets examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - number of pets is_a: core field @@ -11643,7 +11640,7 @@ slots: title: number of houseplants examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - number of houseplants is_a: core field @@ -11663,7 +11660,7 @@ slots: title: number of residents examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - number of residents is_a: core field @@ -11683,7 +11680,7 @@ slots: title: occupant density at sampling examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - occupant density at sampling is_a: core field @@ -11703,7 +11700,7 @@ slots: title: occupancy documentation examples: - value: estimate - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - occupancy documentation is_a: core field @@ -11723,7 +11720,7 @@ slots: title: occupancy at sampling examples: - value: '10' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - occupancy at sampling is_a: core field @@ -11746,7 +11743,7 @@ slots: title: organic carbon examples: - value: 1.5 microgram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - organic carbon is_a: core field @@ -11775,7 +11772,7 @@ slots: title: organism count qPCR information examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - organism count qPCR information is_a: core field @@ -11800,7 +11797,7 @@ slots: title: organic matter examples: - value: 1.75 milligram per cubic meter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - organic matter is_a: core field @@ -11823,7 +11820,7 @@ slots: title: organic nitrogen examples: - value: 4 micromole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - organic nitrogen is_a: core field @@ -11847,7 +11844,7 @@ slots: title: organic particles examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - organic particles is_a: core field @@ -11875,7 +11872,7 @@ slots: title: organism count examples: - value: total prokaryotes;3.5e7 cells per milliliter;qPCR - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - organism count is_a: core field @@ -11898,7 +11895,7 @@ slots: title: oil water contact depth examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - oil water contact depth is_a: core field @@ -11918,7 +11915,7 @@ slots: title: oxygenation status of sample examples: - value: aerobic - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - oxygenation status of sample is_a: core field @@ -11941,7 +11938,7 @@ slots: title: oxygen examples: - value: 600 parts per million - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - oxygen is_a: core field @@ -11964,7 +11961,7 @@ slots: title: particulate organic carbon examples: - value: 1.92 micromole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - particulate organic carbon is_a: core field @@ -11987,7 +11984,7 @@ slots: title: particulate organic nitrogen examples: - value: 0.3 micromole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - particulate organic nitrogen is_a: core field @@ -12012,7 +12009,7 @@ slots: title: particle classification examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - particle classification is_a: core field @@ -12032,7 +12029,7 @@ slots: title: pcr conditions examples: - value: initial denaturation:94_3;annealing:50_1;elongation:72_1.5;final elongation:72_10;35 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - pcr conditions is_a: sequencing field @@ -12054,7 +12051,7 @@ slots: title: pcr primers examples: - value: FWD:GTGCCAGCMGCCGCGGTAA;REV:GGACTACHVGGGTWTCTAAT - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - pcr primers is_a: sequencing field @@ -12079,7 +12076,7 @@ slots: title: permeability examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - permeability is_a: core field @@ -12103,7 +12100,7 @@ slots: title: perturbation examples: - value: antibiotic addition;R2/2018-05-11T14:30Z/2018-05-11T19:30Z/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - perturbation is_a: core field @@ -12131,7 +12128,7 @@ slots: title: pesticide regimen examples: - value: pyrethrum;0.6 milligram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - pesticide regimen is_a: core field @@ -12155,7 +12152,7 @@ slots: title: petroleum hydrocarbon examples: - value: 0.05 micromole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - petroleum hydrocarbon is_a: core field @@ -12176,7 +12173,7 @@ slots: title: pH examples: - value: '7.2' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - pH is_a: core field @@ -12196,7 +12193,7 @@ slots: title: pH method examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - pH method is_a: core field @@ -12220,7 +12217,7 @@ slots: title: pH regimen examples: - value: 7.6;R2/2018-05-11:T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - pH regimen is_a: core field @@ -12244,7 +12241,7 @@ slots: title: phaeopigments examples: - value: 2.5 milligram per cubic meter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - phaeopigments is_a: core field @@ -12268,7 +12265,7 @@ slots: title: phosphate examples: - value: 0.7 micromole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - phosphate is_a: core field @@ -12291,7 +12288,7 @@ slots: title: phospholipid fatty acid examples: - value: 2.98 milligram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - phospholipid fatty acid is_a: core field @@ -12315,7 +12312,7 @@ slots: title: photon flux examples: - value: 3.926 micromole photons per second per square meter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - photon flux is_a: core field @@ -12339,7 +12336,7 @@ slots: title: plant growth medium examples: - value: hydroponic plant culture media [EO:0007067] - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - plant growth medium is_a: core field @@ -12359,7 +12356,7 @@ slots: title: plant product examples: - value: xylem sap [PO:0025539] - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - plant product is_a: core field @@ -12381,7 +12378,7 @@ slots: title: plant sex examples: - value: Hermaphroditic - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - plant sex is_a: core field @@ -12404,7 +12401,7 @@ slots: title: plant structure examples: - value: epidermis [PO:0005679] - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - plant structure is_a: core field @@ -12430,7 +12427,7 @@ slots: title: pollutants examples: - value: lead;0.15 microgram per cubic meter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - pollutants is_a: core field @@ -12452,7 +12449,7 @@ slots: title: pooling of DNA extracts (if done) examples: - value: yes;5 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - pooling of DNA extracts (if done) is_a: core field @@ -12477,7 +12474,7 @@ slots: title: porosity examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - porosity is_a: core field @@ -12501,7 +12498,7 @@ slots: title: potassium examples: - value: 463 milligram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - potassium is_a: core field @@ -12527,7 +12524,7 @@ slots: title: pour point examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - pour point is_a: core field @@ -12548,7 +12545,7 @@ slots: title: pre-treatment examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - pre-treatment is_a: core field @@ -12570,7 +12567,7 @@ slots: title: presence of pets, animals, or insects examples: - value: cat;5 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - presence of pets, animals, or insects is_a: core field @@ -12594,7 +12591,7 @@ slots: title: pressure examples: - value: 50 atmosphere - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - pressure is_a: core field @@ -12614,7 +12611,7 @@ slots: title: history/previous land use method examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - history/previous land use method is_a: core field @@ -12635,7 +12632,7 @@ slots: title: history/previous land use examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - history/previous land use is_a: core field @@ -12660,7 +12657,7 @@ slots: title: primary production examples: - value: 100 milligram per cubic meter per day - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - primary production is_a: core field @@ -12682,7 +12679,7 @@ slots: title: primary treatment examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - primary treatment is_a: core field @@ -12706,7 +12703,7 @@ slots: title: production rate examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - production rate is_a: core field @@ -12726,7 +12723,7 @@ slots: title: production start date examples: - value: '2018-05-11' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - production start date is_a: core field @@ -12747,7 +12744,7 @@ slots: title: profile position examples: - value: summit - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - profile position is_a: core field @@ -12767,7 +12764,7 @@ slots: title: quadrant position examples: - value: West side - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - quadrant position is_a: core field @@ -12794,7 +12791,7 @@ slots: title: radiation regimen examples: - value: gamma radiation;60 gray;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - radiation regimen is_a: core field @@ -12821,7 +12818,7 @@ slots: title: rainfall regimen examples: - value: 15 millimeter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - rainfall regimen is_a: core field @@ -12844,7 +12841,7 @@ slots: title: reactor type examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - reactor type is_a: core field @@ -12869,7 +12866,7 @@ slots: title: redox potential examples: - value: 300 millivolt - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - redox potential is_a: core field @@ -12893,7 +12890,7 @@ slots: title: relative air humidity examples: - value: 80% - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - relative air humidity is_a: core field @@ -12916,7 +12913,7 @@ slots: title: outside relative humidity examples: - value: 12 per kilogram of air - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - outside relative humidity is_a: core field @@ -12936,7 +12933,7 @@ slots: title: relative sampling location examples: - value: center of car - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - relative sampling location is_a: core field @@ -12956,7 +12953,7 @@ slots: title: reservoir name examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - reservoir name is_a: core field @@ -12984,7 +12981,7 @@ slots: title: resins wt% examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - resins wt% is_a: core field @@ -13008,7 +13005,7 @@ slots: title: room air exchange rate examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - room air exchange rate is_a: core field @@ -13029,7 +13026,7 @@ slots: title: room architectural elements examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - room architectural elements is_a: core field @@ -13050,7 +13047,7 @@ slots: title: room condition examples: - value: new - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - room condition is_a: core field @@ -13070,7 +13067,7 @@ slots: title: rooms connected by a doorway examples: - value: office - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - rooms connected by a doorway is_a: core field @@ -13091,7 +13088,7 @@ slots: title: room count examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - room count is_a: core field @@ -13114,7 +13111,7 @@ slots: title: room dimensions examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - room dimensions is_a: core field @@ -13139,7 +13136,7 @@ slots: title: room door distance examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - room door distance is_a: core field @@ -13161,7 +13158,7 @@ slots: title: rooms that share a door with sampling room examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - rooms that share a door with sampling room is_a: core field @@ -13183,7 +13180,7 @@ slots: title: rooms that are on the same hallway examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - rooms that are on the same hallway is_a: core field @@ -13204,7 +13201,7 @@ slots: title: room location in building examples: - value: interior room - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - room location in building is_a: core field @@ -13225,7 +13222,7 @@ slots: title: room moisture damage or mold history examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - room moisture damage or mold history is_a: core field @@ -13248,7 +13245,7 @@ slots: title: room net area examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - room net area is_a: core field @@ -13269,7 +13266,7 @@ slots: title: room occupancy examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - room occupancy is_a: core field @@ -13290,7 +13287,7 @@ slots: title: room sampling position examples: - value: south corner - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - room sampling position is_a: core field @@ -13311,7 +13308,7 @@ slots: title: room type examples: - value: bathroom - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - room type is_a: core field @@ -13334,7 +13331,7 @@ slots: title: room volume examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - room volume is_a: core field @@ -13356,7 +13353,7 @@ slots: title: rooms that share a wall with sampling room examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - rooms that share a wall with sampling room is_a: core field @@ -13377,7 +13374,7 @@ slots: title: room window count examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - room window count is_a: core field @@ -13398,7 +13395,7 @@ slots: title: rooting conditions examples: - value: http://himedialabs.com/TD/PT158.pdf - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - rooting conditions is_a: core field @@ -13422,7 +13419,7 @@ slots: title: rooting medium carbon examples: - value: sucrose - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - rooting medium carbon is_a: core field @@ -13447,7 +13444,7 @@ slots: title: rooting medium macronutrients examples: - value: KH2PO4;170 milligram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - rooting medium macronutrients is_a: core field @@ -13472,7 +13469,7 @@ slots: title: rooting medium micronutrients examples: - value: H3BO3;6.2 milligram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - rooting medium micronutrients is_a: core field @@ -13493,7 +13490,7 @@ slots: title: rooting medium pH examples: - value: '7.5' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - rooting medium pH is_a: core field @@ -13517,7 +13514,7 @@ slots: title: rooting medium regulators examples: - value: abscisic acid;0.75 milligram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - rooting medium regulators is_a: core field @@ -13539,7 +13536,7 @@ slots: title: rooting medium solidifier examples: - value: agar - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - rooting medium solidifier is_a: core field @@ -13565,7 +13562,7 @@ slots: title: rooting medium organic supplements examples: - value: nicotinic acid;0.5 milligram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - rooting medium organic supplements is_a: core field @@ -13594,7 +13591,7 @@ slots: title: salinity examples: - value: 25 practical salinity unit - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - salinity is_a: core field @@ -13614,7 +13611,7 @@ slots: title: salinity method examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - salinity method is_a: core field @@ -13642,7 +13639,7 @@ slots: title: salt regimen examples: - value: NaCl;5 gram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - salt regimen is_a: core field @@ -13663,7 +13660,7 @@ slots: title: sample capture status examples: - value: farm sample - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample capture status is_a: core field @@ -13682,7 +13679,7 @@ slots: title: sample collection device examples: - value: swab, biopsy, niskin bottle, push core, drag swab [GENEPIO:0002713] - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample collection device is_a: nucleic acid sequence source field @@ -13700,7 +13697,7 @@ slots: title: sample collection method examples: - value: swabbing - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample collection method is_a: nucleic acid sequence source field @@ -13723,7 +13720,7 @@ slots: title: sample collection point examples: - value: well - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample collection point is_a: core field @@ -13744,7 +13741,7 @@ slots: title: sample disease stage examples: - value: infection - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample disease stage is_a: core field @@ -13764,7 +13761,7 @@ slots: title: sampling floor examples: - value: 4th floor - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sampling floor is_a: core field @@ -13793,7 +13790,7 @@ slots: title: corrosion rate at sample location examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - corrosion rate at sample location is_a: core field @@ -13813,7 +13810,7 @@ slots: title: sample material processing examples: - value: filtering of seawater, storing samples in ethanol - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample material processing is_a: nucleic acid sequence source field @@ -13842,7 +13839,7 @@ slots: title: sample measured depth examples: - value: 1534 meter;MSL - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample measured depth is_a: core field @@ -13865,7 +13862,7 @@ slots: title: sample name examples: - value: ISDsoil1 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample name is_a: investigation field @@ -13890,7 +13887,7 @@ slots: title: preservative added to sample examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - preservative added to sample is_a: core field @@ -13912,7 +13909,7 @@ slots: title: sampling room ID or name examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sampling room ID or name is_a: core field @@ -13933,7 +13930,7 @@ slots: title: amount or size of sample collected examples: - value: 5 liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - amount or size of sample collected is_a: nucleic acid sequence source field @@ -13956,7 +13953,7 @@ slots: title: sample size sorting method examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample size sorting method is_a: core field @@ -13977,7 +13974,7 @@ slots: title: sample storage duration examples: - value: P1Y6M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample storage duration is_a: core field @@ -13998,7 +13995,7 @@ slots: title: sample storage location examples: - value: Freezer no:5 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample storage location is_a: core field @@ -14022,7 +14019,7 @@ slots: title: sample storage temperature examples: - value: -80 degree Celsius - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample storage temperature is_a: core field @@ -14044,7 +14041,7 @@ slots: title: sample subtype examples: - value: biofilm - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample subtype is_a: core field @@ -14063,7 +14060,7 @@ slots: title: Taxonomy ID of DNA sample comments: - coal metagenome [NCBITaxon:1260732] would be a reasonable has_raw_value - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - Taxonomy ID of DNA sample is_a: investigation field @@ -14086,7 +14083,7 @@ slots: title: sampling time outside examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sampling time outside is_a: core field @@ -14110,7 +14107,7 @@ slots: title: sample transport conditions examples: - value: 5 days;-20 degree Celsius - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample transport conditions is_a: core field @@ -14136,7 +14133,7 @@ slots: title: sample true vertical depth subsea examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample true vertical depth subsea is_a: core field @@ -14162,7 +14159,7 @@ slots: title: sample type examples: - value: built environment sample [GENEPIO:0001248] - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample type is_a: core field @@ -14185,7 +14182,7 @@ slots: title: sample volume or weight for DNA extraction examples: - value: 1500 milliliter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample volume or weight for DNA extraction is_a: nucleic acid sequence source field @@ -14205,7 +14202,7 @@ slots: title: sampling day weather examples: - value: foggy - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sampling day weather is_a: core field @@ -14225,7 +14222,7 @@ slots: title: sample well name examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample well name is_a: core field @@ -14253,7 +14250,7 @@ slots: title: saturates wt% examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - saturates wt% is_a: core field @@ -14276,7 +14273,7 @@ slots: title: season examples: - value: autumn [NCIT:C94733] - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - season is_a: core field @@ -14300,7 +14297,7 @@ slots: title: seasonal environment examples: - value: rainy;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - seasonal environment is_a: core field @@ -14325,7 +14322,7 @@ slots: title: mean seasonal precipitation examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - mean seasonal precipitation is_a: core field @@ -14348,7 +14345,7 @@ slots: title: mean seasonal temperature examples: - value: 18 degree Celsius - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - mean seasonal temperature is_a: core field @@ -14368,7 +14365,7 @@ slots: title: seasonal use examples: - value: Winter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - seasonal use is_a: core field @@ -14389,7 +14386,7 @@ slots: title: secondary treatment examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - secondary treatment is_a: core field @@ -14410,7 +14407,7 @@ slots: title: sediment type examples: - value: biogenous - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sediment type is_a: core field @@ -14428,7 +14425,7 @@ slots: title: sequencing method examples: - value: 454 Genome Sequencer FLX [OBI:0000702] - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sequencing method is_a: sequencing field @@ -14449,7 +14446,7 @@ slots: title: sequence quality check examples: - value: none - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sequence quality check is_a: sequencing field @@ -14470,7 +14467,7 @@ slots: title: sewage type examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sewage type is_a: core field @@ -14491,7 +14488,7 @@ slots: title: shading device signs of water/mold examples: - value: no presence of mold visible - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - shading device signs of water/mold is_a: core field @@ -14512,7 +14509,7 @@ slots: title: shading device condition examples: - value: new - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - shading device condition is_a: core field @@ -14532,7 +14529,7 @@ slots: title: shading device location examples: - value: exterior - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - shading device location is_a: core field @@ -14553,7 +14550,7 @@ slots: title: shading device material examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - shading device material is_a: core field @@ -14574,7 +14571,7 @@ slots: title: shading device type examples: - value: slatted aluminum awning - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - shading device type is_a: core field @@ -14595,7 +14592,7 @@ slots: title: composite design/sieving examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - composite design/sieving is_a: core field @@ -14619,7 +14616,7 @@ slots: title: silicate examples: - value: 0.05 micromole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - silicate is_a: core field @@ -14636,7 +14633,7 @@ slots: title: size fraction selected examples: - value: 0-0.22 micrometer - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - size fraction selected is_a: nucleic acid sequence source field @@ -14661,7 +14658,7 @@ slots: title: size-fraction lower threshold examples: - value: 0.2 micrometer - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - size-fraction lower threshold is_a: core field @@ -14685,7 +14682,7 @@ slots: title: size-fraction upper threshold examples: - value: 20 micrometer - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - size-fraction upper threshold is_a: core field @@ -14711,7 +14708,7 @@ slots: title: slope aspect examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - slope aspect is_a: core field @@ -14736,7 +14733,7 @@ slots: title: slope gradient examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - slope gradient is_a: core field @@ -14759,7 +14756,7 @@ slots: title: sludge retention time examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sludge retention time is_a: core field @@ -14782,7 +14779,7 @@ slots: title: sodium examples: - value: 10.5 milligram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sodium is_a: core field @@ -14804,7 +14801,7 @@ slots: title: soil horizon examples: - value: A horizon - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - soil horizon is_a: core field @@ -14827,7 +14824,7 @@ slots: title: soil texture measurement examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - soil texture measurement is_a: core field @@ -14847,7 +14844,7 @@ slots: title: soil texture method examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - soil texture method is_a: core field @@ -14870,7 +14867,7 @@ slots: title: soil type examples: - value: plinthosol [ENVO:00002250] - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - soil type is_a: core field @@ -14892,7 +14889,7 @@ slots: title: soil type method examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - soil type method is_a: core field @@ -14918,7 +14915,7 @@ slots: title: solar irradiance examples: - value: 1.36 kilowatts per square meter per day - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - solar irradiance is_a: core field @@ -14942,7 +14939,7 @@ slots: title: soluble inorganic material examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - soluble inorganic material is_a: core field @@ -14967,7 +14964,7 @@ slots: title: soluble organic material examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - soluble organic material is_a: core field @@ -14991,7 +14988,7 @@ slots: title: soluble reactive phosphorus examples: - value: 0.1 milligram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - soluble reactive phosphorus is_a: core field @@ -15020,7 +15017,7 @@ slots: title: source material identifiers examples: - value: MPI012345 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - source material identifiers is_a: nucleic acid sequence source field @@ -15041,7 +15038,7 @@ slots: title: space typical state examples: - value: typically occupied - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - space typical state is_a: core field @@ -15063,7 +15060,7 @@ slots: title: specifications examples: - value: construction - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - specifications is_a: core field @@ -15088,7 +15085,7 @@ slots: title: specific humidity examples: - value: 15 per kilogram of air - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - specific humidity is_a: core field @@ -15109,7 +15106,7 @@ slots: title: source rock depositional environment examples: - value: Marine - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - source rock depositional environment is_a: core field @@ -15130,7 +15127,7 @@ slots: title: source rock geological age examples: - value: Silurian - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - source rock geological age is_a: core field @@ -15154,7 +15151,7 @@ slots: title: source rock kerogen type examples: - value: Type IV - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - source rock kerogen type is_a: core field @@ -15175,7 +15172,7 @@ slots: title: source rock lithology examples: - value: Coal - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - source rock lithology is_a: core field @@ -15198,7 +15195,7 @@ slots: title: standing water regimen examples: - value: standing water;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - standing water regimen is_a: core field @@ -15220,7 +15217,7 @@ slots: title: storage conditions examples: - value: -20 degree Celsius freezer;P2Y10D - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - storage conditions is_a: core field @@ -15242,7 +15239,7 @@ slots: title: substructure type examples: - value: basement - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - substructure type is_a: core field @@ -15265,7 +15262,7 @@ slots: title: sulfate examples: - value: 5 micromole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sulfate is_a: core field @@ -15288,7 +15285,7 @@ slots: title: sulfate in formation water examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sulfate in formation water is_a: core field @@ -15311,7 +15308,7 @@ slots: title: sulfide examples: - value: 2 micromole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sulfide is_a: core field @@ -15331,7 +15328,7 @@ slots: title: surface-air contaminant examples: - value: radon - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - surface-air contaminant is_a: core field @@ -15354,7 +15351,7 @@ slots: title: surface humidity examples: - value: 10% - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - surface humidity is_a: core field @@ -15374,7 +15371,7 @@ slots: title: surface material examples: - value: wood - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - surface material is_a: core field @@ -15397,7 +15394,7 @@ slots: title: surface moisture examples: - value: 0.01 gram per square meter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - surface moisture is_a: core field @@ -15417,7 +15414,7 @@ slots: title: surface moisture pH examples: - value: '7' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - surface moisture pH is_a: core field @@ -15440,7 +15437,7 @@ slots: title: surface temperature examples: - value: 15 degree Celsius - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - surface temperature is_a: core field @@ -15463,7 +15460,7 @@ slots: title: suspended particulate matter examples: - value: 0.5 milligram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - suspended particulate matter is_a: core field @@ -15488,7 +15485,7 @@ slots: title: suspended solids examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - suspended solids is_a: core field @@ -15515,7 +15512,7 @@ slots: title: total acid number examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - total acid number is_a: core field @@ -15532,7 +15529,7 @@ slots: title: target gene examples: - value: 16S rRNA, 18S rRNA, nif, amoA, rpo - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - target gene is_a: sequencing field @@ -15551,7 +15548,7 @@ slots: title: target subfragment examples: - value: V6, V9, ITS - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - target subfragment is_a: sequencing field @@ -15572,7 +15569,7 @@ slots: title: temperature examples: - value: 25 degree Celsius - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - temperature is_a: environment field @@ -15595,7 +15592,7 @@ slots: title: temperature outside house examples: - value: 5 degree Celsius - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - temperature outside house is_a: core field @@ -15616,7 +15613,7 @@ slots: title: tertiary treatment examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - tertiary treatment is_a: core field @@ -15637,7 +15634,7 @@ slots: title: tidal stage examples: - value: high tide - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - tidal stage is_a: core field @@ -15657,7 +15654,7 @@ slots: title: history/tillage examples: - value: chisel - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - history/tillage is_a: core field @@ -15677,7 +15674,7 @@ slots: title: tissue culture growth media examples: - value: https://link.springer.com/content/pdf/10.1007/BF02796489.pdf - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - tissue culture growth media is_a: core field @@ -15701,7 +15698,7 @@ slots: title: toluene examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - toluene is_a: core field @@ -15724,7 +15721,7 @@ slots: title: total carbon examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - total carbon is_a: core field @@ -15747,7 +15744,7 @@ slots: title: total depth of water column examples: - value: 500 meter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - total depth of water column is_a: core field @@ -15771,7 +15768,7 @@ slots: title: total dissolved nitrogen examples: - value: 40 microgram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - total dissolved nitrogen is_a: core field @@ -15794,7 +15791,7 @@ slots: title: total inorganic nitrogen examples: - value: 40 microgram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - total inorganic nitrogen is_a: core field @@ -15817,7 +15814,7 @@ slots: title: total iron examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - total iron is_a: core field @@ -15842,7 +15839,7 @@ slots: title: total nitrogen concentration examples: - value: 50 micromole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - total nitrogen concentration is_a: core field @@ -15862,7 +15859,7 @@ slots: title: total nitrogen content method examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - total nitrogen content method is_a: core field @@ -15886,7 +15883,7 @@ slots: title: total nitrogen content examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - total nitrogen content is_a: core field @@ -15906,7 +15903,7 @@ slots: title: total organic carbon method examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - total organic carbon method is_a: core field @@ -15931,7 +15928,7 @@ slots: title: total organic carbon examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - total organic carbon is_a: core field @@ -15954,7 +15951,7 @@ slots: title: total particulate carbon examples: - value: 35 micromole per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - total particulate carbon is_a: core field @@ -15978,7 +15975,7 @@ slots: title: total phosphorus examples: - value: 0.03 milligram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - total phosphorus is_a: core field @@ -16001,7 +15998,7 @@ slots: title: total phosphate examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - total phosphate is_a: core field @@ -16024,7 +16021,7 @@ slots: title: total sulfur examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - total sulfur is_a: core field @@ -16044,7 +16041,7 @@ slots: title: train line examples: - value: red - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - train line is_a: core field @@ -16064,7 +16061,7 @@ slots: title: train station collection location examples: - value: forest hills - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - train station collection location is_a: core field @@ -16084,7 +16081,7 @@ slots: title: train stop collection location examples: - value: end - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - train stop collection location is_a: core field @@ -16108,7 +16105,7 @@ slots: title: turbidity examples: - value: 0.3 nephelometric turbidity units - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - turbidity is_a: core field @@ -16132,7 +16129,7 @@ slots: title: depth (TVDSS) of hydrocarbon resource pressure examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - depth (TVDSS) of hydrocarbon resource pressure is_a: core field @@ -16156,7 +16153,7 @@ slots: title: depth (TVDSS) of hydrocarbon resource temperature examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - depth (TVDSS) of hydrocarbon resource temperature is_a: core field @@ -16176,7 +16173,7 @@ slots: title: typical occupant density examples: - value: '25' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - typical occupant density is_a: core field @@ -16199,7 +16196,7 @@ slots: title: ventilation rate examples: - value: 750 cubic meter per minute - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - ventilation rate is_a: core field @@ -16219,7 +16216,7 @@ slots: title: ventilation type examples: - value: Operable windows - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - ventilation type is_a: core field @@ -16243,7 +16240,7 @@ slots: title: volatile fatty acids examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - volatile fatty acids is_a: core field @@ -16266,7 +16263,7 @@ slots: title: vfa in formation water examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - vfa in formation water is_a: core field @@ -16286,7 +16283,7 @@ slots: title: visual media examples: - value: 3D scans - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - visual media is_a: core field @@ -16310,7 +16307,7 @@ slots: title: viscosity examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - viscosity is_a: core field @@ -16336,7 +16333,7 @@ slots: title: volatile organic compounds examples: - value: formaldehyde;500 nanogram per liter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - volatile organic compounds is_a: core field @@ -16360,7 +16357,7 @@ slots: title: wall area examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - wall area is_a: core field @@ -16381,7 +16378,7 @@ slots: title: wall construction type examples: - value: fire resistive - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - wall construction type is_a: core field @@ -16401,7 +16398,7 @@ slots: title: wall finish material examples: - value: wood - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - wall finish material is_a: core field @@ -16424,7 +16421,7 @@ slots: title: wall height examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - wall height is_a: core field @@ -16444,7 +16441,7 @@ slots: title: wall location examples: - value: north - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - wall location is_a: core field @@ -16464,7 +16461,7 @@ slots: title: wall surface treatment examples: - value: paneling - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - wall surface treatment is_a: core field @@ -16484,7 +16481,7 @@ slots: title: wall texture examples: - value: popcorn - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - wall texture is_a: core field @@ -16509,7 +16506,7 @@ slots: title: wall thermal mass examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - wall thermal mass is_a: core field @@ -16529,7 +16526,7 @@ slots: title: wall signs of water/mold examples: - value: no presence of mold visible - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - wall signs of water/mold is_a: core field @@ -16551,7 +16548,7 @@ slots: title: wastewater type examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - wastewater type is_a: core field @@ -16572,7 +16569,7 @@ slots: title: water content method examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - water content method is_a: core field @@ -16596,7 +16593,7 @@ slots: title: water content examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - water content is_a: core field @@ -16619,7 +16616,7 @@ slots: title: water current examples: - value: 10 cubic meter per second - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - water current is_a: core field @@ -16643,7 +16640,7 @@ slots: title: water cut examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - water cut is_a: core field @@ -16666,7 +16663,7 @@ slots: title: water feature size examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - water feature size is_a: core field @@ -16686,7 +16683,7 @@ slots: title: water feature type examples: - value: stream - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - water feature type is_a: core field @@ -16709,7 +16706,7 @@ slots: title: water production rate examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - water production rate is_a: core field @@ -16735,7 +16732,7 @@ slots: title: water temperature regimen examples: - value: 15 degree Celsius;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - water temperature regimen is_a: core field @@ -16762,7 +16759,7 @@ slots: title: watering regimen examples: - value: 1 liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - watering regimen is_a: core field @@ -16783,7 +16780,7 @@ slots: title: weekday examples: - value: Sunday - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - weekday is_a: core field @@ -16806,7 +16803,7 @@ slots: title: well identification number examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - well identification number is_a: core field @@ -16827,7 +16824,7 @@ slots: title: wind direction examples: - value: Northwest - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - wind direction is_a: core field @@ -16851,7 +16848,7 @@ slots: title: wind speed examples: - value: 21 kilometer per hour - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - wind speed is_a: core field @@ -16871,7 +16868,7 @@ slots: title: window condition examples: - value: rupture - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - window condition is_a: core field @@ -16891,7 +16888,7 @@ slots: title: window covering examples: - value: curtains - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - window covering is_a: core field @@ -16911,7 +16908,7 @@ slots: title: window horizontal position examples: - value: middle - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - window horizontal position is_a: core field @@ -16931,7 +16928,7 @@ slots: title: window location examples: - value: west - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - window location is_a: core field @@ -16951,7 +16948,7 @@ slots: title: window material examples: - value: wood - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - window material is_a: core field @@ -16971,7 +16968,7 @@ slots: title: window open frequency examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - window open frequency is_a: core field @@ -16994,7 +16991,7 @@ slots: title: window area/size examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - window area/size is_a: core field @@ -17016,7 +17013,7 @@ slots: title: window status examples: - value: open - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - window status is_a: core field @@ -17037,7 +17034,7 @@ slots: title: window type examples: - value: fixed window - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - window type is_a: core field @@ -17057,7 +17054,7 @@ slots: title: window vertical position examples: - value: middle - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - window vertical position is_a: core field @@ -17077,7 +17074,7 @@ slots: title: window signs of water/mold examples: - value: no presence of mold visible - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - window signs of water/mold is_a: core field @@ -17101,7 +17098,7 @@ slots: title: xylene examples: - value: '' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - xylene is_a: core field @@ -17110,54 +17107,54 @@ slots: range: QuantityValue sequencing field: name: sequencing field - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc + abstract: true + environment field: + name: environment field + description: field describing environmental aspect of a sample + from_schema: https://w3id.org/nmdc/nmdc abstract: true - has numeric value: - name: has numeric value - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - owner: QuantityValue - range: double investigation field: name: investigation field description: field describing aspect of the investigation/study to which the sample belongs - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - abstract: true - core field: - name: core field - description: basic fields - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc abstract: true + has numeric value: + name: has numeric value + from_schema: https://w3id.org/nmdc/nmdc + owner: QuantityValue + range: double + has raw value: + name: has raw value + from_schema: https://w3id.org/nmdc/nmdc + string_serialization: '{has numeric value} {has unit}' + owner: QuantityValue nucleic acid sequence source field: name: nucleic acid sequence source field - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc abstract: true - environment field: - name: environment field - description: field describing environmental aspect of a sample - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + core field: + name: core field + description: basic fields + from_schema: https://w3id.org/nmdc/nmdc abstract: true has unit: name: has unit description: Example "m" - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - owner: QuantityValue - has raw value: - name: has raw value - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - string_serialization: '{has numeric value} {has unit}' + from_schema: https://w3id.org/nmdc/nmdc owner: QuantityValue chemical: name: chemical description: from reaction participant class - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc stoichiometry: name: stoichiometry description: from reaction participant class - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc subject: name: subject - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: GeneProduct has_function: name: has_function @@ -17165,11 +17162,11 @@ slots: - the range for has_function was asserted as functional_annotation_term/FunctionalAnnotationTerm, - but is actually taking string arguments in MongoDB, - and those are frequently fulltext, not CURIEs. MAM 2021-06-23 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string has_participants: name: has_participants - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc exact_mappings: - RO:0000057 abstract: true @@ -17181,64 +17178,64 @@ slots: genomes, plasmids, and some viral genomes), the requirement for start to be less than or equal to end is satisfied by making end = the position of the end + the length of the landmark feature. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer minimum_value: 1 seqid: name: seqid todos: - change range from string to object - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc strand: name: strand todos: - set the range to an enum? - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc direction: name: direction - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc encodes: name: encodes - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc end: name: end - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc feature_type: name: feature_type - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc has_part: name: has_part - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_balanced: name: is_balanced - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_diastereoselective: name: is_diastereoselective - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_fully_characterized: name: is_fully_characterized - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_stereo: name: is_stereo - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_transport: name: is_transport - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc left_participants: name: left_participants - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc phase: name: phase - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc right_participants: name: right_participants - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc smarts_string: name: smarts_string - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc start: name: start - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc classes: Database: name: Database @@ -17246,7 +17243,7 @@ classes: need to correspond to an actual managed database top level holder class. When translated to JSON-Schema this is the 'root' object. It should contain pointers to other objects of interest - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - NMDC metadata object slots: @@ -17294,7 +17291,7 @@ classes: tree_root: true Pooling: name: Pooling - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: PlannedProcess slot_usage: has_input: @@ -17313,7 +17310,7 @@ classes: interpolated: true Extraction: name: Extraction - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: PlannedProcess slots: - extraction_method @@ -17338,13 +17335,13 @@ classes: interpolated: true Protocol: name: Protocol - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc slots: - url - name QualityControlReport: name: QualityControlReport - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc slots: - status - name @@ -17352,7 +17349,7 @@ classes: name: LibraryPreparation comments: - OBI:0000711 specifies a DNA input (but not ONLY a DNA input) - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - LibraryConstruction close_mappings: @@ -17389,7 +17386,7 @@ classes: the same plant were obtained at the same site. In this case, the site would correspond to one tree. - might correspond to GOLD's identifier on a page like https://gold.jgi.doe.gov/biosample?id=Gb0305833 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - research plot is_a: Site @@ -17418,7 +17415,7 @@ classes: title: Collecting Biosamples From Site comments: - this illustrates implementing a Biosample relation with a process class - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: PlannedProcess slot_usage: has_input: @@ -17447,7 +17444,7 @@ classes: - removed id_prefixes value of GOLD, since we are now using pattern-based id validation in_subset: - data object subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: NamedThing slots: - file_size_bytes @@ -17487,7 +17484,7 @@ classes: id validation in_subset: - sample subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample - material sample @@ -18575,7 +18572,7 @@ classes: but no longer for the Study.id in_subset: - sample subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - proposal - research proposal @@ -18700,7 +18697,7 @@ classes: description: A process that takes one or more biosamples as inputs and generates one or as outputs. Examples of outputs include samples cultivated from another sample or data objects created by instruments runs. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - material processing broad_mappings: @@ -18732,7 +18729,7 @@ classes: - The ID prefix for objects coming from GOLD will be gold:Gp in_subset: - sample subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - omics assay - sequencing project @@ -18782,7 +18779,7 @@ classes: will be at least a slot for a CRediT Contributor Role (https://casrai.org/credit/) and for a person value Specifically see the associated researchers tab on the NMDC_SampleMetadata-V4_CommentsForUpdates at https://docs.google.com/spreadsheets/d/1INlBo5eoqn2efn4H2P2i8rwRBtnbDVTqXrochJEAPko/edit#gid=0 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - study role - credit table @@ -18811,7 +18808,7 @@ classes: and stop times, potentially with different inputs and outputs in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - analysis is_a: Activity @@ -18866,7 +18863,7 @@ classes: relevant to NMDC in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: WorkflowExecutionActivity slots: - type @@ -18910,7 +18907,7 @@ classes: name: MetatranscriptomeAssembly in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: WorkflowExecutionActivity slots: - asm_score @@ -18955,7 +18952,7 @@ classes: annotation of assembled metagenome contigs in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: WorkflowExecutionActivity slots: - type @@ -18972,7 +18969,7 @@ classes: name: MetatranscriptomeAnnotationActivity in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: WorkflowExecutionActivity slots: - type @@ -18991,7 +18988,7 @@ classes: activity. in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: WorkflowExecutionActivity slots: - type @@ -19010,7 +19007,7 @@ classes: title: Metagenome-Assembled Genome analysis activity in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: WorkflowExecutionActivity slots: - type @@ -19035,7 +19032,7 @@ classes: title: Metagenome sequencing activity in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: WorkflowExecutionActivity slot_usage: id: @@ -19054,7 +19051,7 @@ classes: title: Read quality control analysis activity in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: WorkflowExecutionActivity slots: - type @@ -19080,7 +19077,7 @@ classes: title: Read based analysis activity in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: WorkflowExecutionActivity slots: - type @@ -19096,7 +19093,7 @@ classes: name: MetabolomicsAnalysisActivity in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: WorkflowExecutionActivity slots: - has_calibration @@ -19117,7 +19114,7 @@ classes: name: MetaproteomicsAnalysisActivity in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: WorkflowExecutionActivity slots: - has_peptide_quantifications @@ -19137,7 +19134,7 @@ classes: name: NomAnalysisActivity in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: WorkflowExecutionActivity slots: - has_calibration @@ -19156,7 +19153,7 @@ classes: NamedThing: name: NamedThing description: a databased entity or concept/class - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc abstract: true slots: - id @@ -19166,7 +19163,7 @@ classes: MaterialEntity: name: MaterialEntity title: Material Entity - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - Material - Physical entity @@ -19175,7 +19172,7 @@ classes: ProcessedSample: name: ProcessedSample title: Processed Sample - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: MaterialEntity slots: - biomaterial_purity @@ -19194,7 +19191,7 @@ classes: AnalyticalSample: name: AnalyticalSample title: Analytical Sample - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: MaterialEntity slot_usage: id: @@ -19209,7 +19206,7 @@ classes: title: Site comments: - BCO sample collection site ? - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: MaterialEntity abstract: true slot_usage: @@ -19223,7 +19220,7 @@ classes: PlannedProcess: name: PlannedProcess title: Planned Process - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: NamedThing abstract: true slots: @@ -19238,17 +19235,17 @@ classes: notes: - The identifiers for terms from external ontologies can't have their ids constrained to the nmdc namespace - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: NamedThing EnvironmentalMaterialTerm: name: EnvironmentalMaterialTerm - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: OntologyClass AttributeValue: name: AttributeValue description: The value for any value of a attribute for a sample. This object can hold both the un-normalized atomic value and the structured value - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc slots: - has_raw_value - was_generated_by @@ -19258,7 +19255,7 @@ classes: description: An optional string that specified the type of object. InstrumentValue: name: InstrumentValue - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: AttributeValue slots: - has_unit @@ -19267,7 +19264,7 @@ classes: QuantityValue: name: QuantityValue description: A simple quantity, e.g. 2cm - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mappings: - schema:QuantityValue is_a: AttributeValue @@ -19291,7 +19288,7 @@ classes: ImageValue: name: ImageValue description: An attribute value representing an image. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: AttributeValue slots: - url @@ -19303,7 +19300,7 @@ classes: todos: - add additional fields e.g for institution - deprecate "has_raw_value" in favor of "name" - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: AttributeValue slots: - orcid @@ -19340,7 +19337,7 @@ classes: is optional. MagBin: name: MagBin - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc slots: - bin_name - bin_quality @@ -19366,7 +19363,7 @@ classes: name: Instrument description: A material entity that is designed to perform a function in a scientific investigation, but is not a reagent[OBI]. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - device exact_mappings: @@ -19384,7 +19381,7 @@ classes: name: MetaboliteQuantification description: This is used to link a metabolomics analysis workflow to a specific metabolite - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc slots: - alternative_identifiers - highest_similarity_score @@ -19393,7 +19390,7 @@ classes: name: PeptideQuantification description: This is used to link a metaproteomics analysis workflow to a specific peptide sequence and related information - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc slots: - all_proteins - best_protein @@ -19405,7 +19402,7 @@ classes: name: ProteinQuantification description: This is used to link a metaproteomics analysis workflow to a specific protein - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc slot_usage: best_protein: name: best_protein @@ -19450,7 +19447,7 @@ classes: comments: - As with the parent OntologyClass, we will not assign an nmdc id pattern or typecode to this class. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://bioconductor.org/packages/devel/data/annotation/vignettes/metaboliteIDmapping/inst/doc/metaboliteIDmapping.html aliases: @@ -19490,40 +19487,40 @@ classes: notes: - we may include a more general gene product class in future to allow for ncRNA annotation - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc exact_mappings: - biolink:GeneProduct is_a: NamedThing TextValue: name: TextValue description: A basic string value - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: AttributeValue slots: - language UrlValue: name: UrlValue description: A value that is a string that conforms to URL syntax - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: AttributeValue TimestampValue: name: TimestampValue description: A value that is a timestamp. The range should be ISO-8601 notes: - 'removed the following slots: year, month, day' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: AttributeValue IntegerValue: name: IntegerValue description: A value that is an integer - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: AttributeValue slots: - has_numeric_value BooleanValue: name: BooleanValue description: A value that is a boolean - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: AttributeValue slots: - has_boolean_value @@ -19532,7 +19529,7 @@ classes: description: A controlled term or class from an ontology todos: - add fields for ontology, branch - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: AttributeValue slots: - term @@ -19542,7 +19539,7 @@ classes: of term with an id notes: - To be used for slots like env_broad_scale - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: ControlledTermValue slot_usage: term: @@ -19553,7 +19550,7 @@ classes: description: A normalized value for a location on the earth's surface notes: - 'what did ''to_str: {latitude} {longitude}'' mean?' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mappings: - schema:GeoCoordinates is_a: AttributeValue @@ -19573,7 +19570,7 @@ classes: Activity: name: Activity description: a provence-generating activity - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mappings: - prov:Activity slots: @@ -19597,7 +19594,7 @@ classes: DissolvingActivity: name: DissolvingActivity title: Dissolving activity - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - dissolution-activity slots: @@ -19622,7 +19619,7 @@ classes: LabDevice: name: LabDevice title: Lab device - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc slots: - device_type - activity_speed @@ -19631,14 +19628,14 @@ classes: MaterialContainer: name: MaterialContainer title: Material container - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc slots: - container_size - container_type MaterialSample: name: MaterialSample title: Material sample - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - Material entity is_a: NamedThing @@ -19653,7 +19650,7 @@ classes: MaterialSamplingActivity: name: MaterialSamplingActivity title: Material sampling activity - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - weighing-activity slots: @@ -19685,7 +19682,7 @@ classes: ReactionActivity: name: ReactionActivity title: Reaction activity - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - reaction-activity slots: @@ -19713,7 +19710,7 @@ classes: description: A feature localized to an interval along a genome comments: - corresponds to an entry in GFF3 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://github.com/The-Sequence-Ontology/Specifications/blob/master/gff3.md slot_usage: @@ -19775,7 +19772,7 @@ classes: to a functional unit of a genome (protein, ncRNA, complex). todos: - decide if this should be used for product naming - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - function - FunctionalAnnotation @@ -19788,7 +19785,7 @@ classes: - COG description: A pathway is a sequence of steps/reactions carried out by an organism or community of organisms - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - biological process - metabolic pathway @@ -19816,7 +19813,7 @@ classes: description: An individual biochemical transformation carried out by a functional unit of an organism, in which a collection of substrates are transformed into a collection of products. Can also represent transporters - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc exact_mappings: - biolink:MolecularActivity is_a: FunctionalAnnotationTerm @@ -19856,7 +19853,7 @@ classes: ReactionParticipant: name: ReactionParticipant description: Instances of this link a reaction to a chemical entity participant - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc slot_usage: chemical: name: chemical @@ -19877,7 +19874,7 @@ classes: description: A set of genes or gene products in which all members are orthologous notes: - KEGG.ORTHOLOGY prefix is used for KO numbers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc exact_mappings: - biolink:GeneFamily is_a: FunctionalAnnotationTerm @@ -19890,7 +19887,7 @@ classes: typically using HMM or Blast type methods notes: - move id slot usage patterns to has_function slot usage? - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://img.jgi.doe.gov/docs/functional-annotation.pdf - https://github.com/microbiomedata/mg_annotation/blob/master/functional-annotation.wdl diff --git a/project/nmdc_schema_merged.yaml b/project/nmdc_schema_merged.yaml index 6192f69522..dff96cd9eb 100644 --- a/project/nmdc_schema_merged.yaml +++ b/project/nmdc_schema_merged.yaml @@ -12,43 +12,61 @@ notes: need better understanding of id patterns (at least) - commented out several MIxS terms assigned to Biosample because the definitions of those terms were commented out in mixs.yaml dues to shared slot uris -id: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc -version: v7.6.1 +id: https://w3id.org/nmdc/nmdc +version: v7.6.2 license: https://creativecommons.org/publicdomain/zero/1.0/ prefixes: + EFO: + prefix_prefix: EFO + prefix_reference: http://www.ebi.ac.uk/efo/ + ISA: + prefix_prefix: ISA + prefix_reference: http://example.com/isa/ + MetaNetX: + prefix_prefix: MetaNetX + prefix_reference: http://example.com/metanetx/ + RetroRules: + prefix_prefix: RetroRules + prefix_reference: http://example.com/retrorules/ emsl.project: prefix_prefix: emsl.project - prefix_reference: 'https://bioregistry.io/reference/emsl.project:' + prefix_reference: 'https://bioregistry.io/emsl.project:' + generic: + prefix_prefix: generic + prefix_reference: https://example.com/generic/ gnps.task: prefix_prefix: gnps.task - prefix_reference: 'https://bioregistry.io/reference/gnps.task:' + prefix_reference: 'https://bioregistry.io/gnps.task:' + gtpo: + prefix_prefix: gtpo + prefix_reference: http://example.com/gtpo/ + igsn: + prefix_prefix: igsn + prefix_reference: https://app.geosamples.org/sample/igsn/ jgi.proposal: prefix_prefix: jgi.proposal - prefix_reference: 'https://bioregistry.io/reference/jgi.proposal:' + prefix_reference: 'https://bioregistry.io/jgi.proposal:' + jgi: + prefix_prefix: jgi + prefix_reference: http://example.com/jgi/ + linkml: + prefix_prefix: linkml + prefix_reference: https://w3id.org/linkml/ + mgnify.proj: + prefix_prefix: mgnify.proj + prefix_reference: 'https://identifiers.org/mgnify.proj:' neon.identifier: prefix_prefix: neon.identifier prefix_reference: http://example.org/neon/identifier/ neon.schema: prefix_prefix: neon.schema prefix_reference: http://example.org/neon/schema/ - generic: - prefix_prefix: generic - prefix_reference: https://example.com/generic/ - linkml: - prefix_prefix: linkml - prefix_reference: https://w3id.org/linkml/ nmdc: prefix_prefix: nmdc prefix_reference: https://w3id.org/nmdc/ - nmdc_yaml: - prefix_prefix: nmdc_yaml - prefix_reference: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/ skos: prefix_prefix: skos prefix_reference: http://www.w3.org/2004/02/skos/core# - igsn: - prefix_prefix: igsn - prefix_reference: https://app.geosamples.org/sample/igsn/ prov: prefix_prefix: prov prefix_reference: http://www.w3.org/ns/prov# @@ -61,27 +79,6 @@ prefixes: xsd: prefix_prefix: xsd prefix_reference: http://www.w3.org/2001/XMLSchema# - EFO: - prefix_prefix: EFO - prefix_reference: http://identifiers.org/efo/ - MetaNetX: - prefix_prefix: MetaNetX - prefix_reference: http://example.com/metanetx/ - ISA: - prefix_prefix: ISA - prefix_reference: http://example.com/isa/ - RetroRules: - prefix_prefix: RetroRules - prefix_reference: http://example.com/retrorules/ - gtpo: - prefix_prefix: gtpo - prefix_reference: http://example.com/gtpo/ - jgi: - prefix_prefix: jgi - prefix_reference: http://example.com/jgi/ - mgnify.proj: - prefix_prefix: mgnify.proj - prefix_reference: 'https://identifiers.org/mgnify.proj:' KEGG.COMPOUND: prefix_prefix: KEGG.COMPOUND prefix_reference: http://identifiers.org/kegg.compound/ @@ -129,10 +126,10 @@ prefixes: prefix_reference: https://raw.githubusercontent.com/microbiomedata/mixs/main/model/schema/ COG: prefix_prefix: COG - prefix_reference: 'https://bioregistry.io/reference/cog:' + prefix_reference: 'https://bioregistry.io/cog:' EC: prefix_prefix: EC - prefix_reference: 'https://bioregistry.io/reference/eccode:' + prefix_reference: 'https://bioregistry.io/eccode:' GO: prefix_prefix: GO prefix_reference: http://purl.obolibrary.org/obo/GO_ @@ -169,28 +166,28 @@ subsets: name: sample subset description: Subset consisting of entities linked to the processing of samples. Currently, this subset consists of study, omics process, and biosample. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc data object subset: name: data object subset description: Subset consisting of the data objects that either inputs or outputs of processes or workflows. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc workflow subset: name: workflow subset description: Subset consisting of just the workflow execution activities - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity environment: name: environment - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core investigation: name: investigation - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core nucleic acid sequence source: name: nucleic acid sequence source - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core sequencing: name: sequencing - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core mixs_environmental_triad: name: mixs_environmental_triad title: MIxS Environmental Triad @@ -214,7 +211,7 @@ types: bytes: name: bytes description: An integer value that corresponds to a size in bytes - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core see_also: - UO:0000233 base: int @@ -222,7 +219,7 @@ types: decimal degree: name: decimal degree description: A decimal degree expresses latitude or longitude as decimal fractions. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core see_also: - https://en.wikipedia.org/wiki/Decimal_degrees base: float @@ -230,14 +227,14 @@ types: language code: name: language code description: A language code conforming to ISO_639-1 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core see_also: - https://en.wikipedia.org/wiki/ISO_639-1 base: str uri: xsd:language unit: name: unit - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core mappings: - qud:Unit - UO:0000000 @@ -246,7 +243,7 @@ types: external identifier: name: external identifier description: A CURIE representing an external identifier - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers see_also: - https://microbiomedata.github.io/nmdc-schema/identifiers.html typeof: uriorcurie @@ -398,7 +395,7 @@ types: enums: StatusEnum: name: StatusEnum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: pass: text: pass @@ -406,7 +403,7 @@ enums: text: fail ExtractionTargetEnum: name: ExtractionTargetEnum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: DNA: text: DNA @@ -418,7 +415,7 @@ enums: text: protein LibraryTypeEnum: name: LibraryTypeEnum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: DNA: text: DNA @@ -426,7 +423,7 @@ enums: text: RNA JgiContTypeEnum: name: JgiContTypeEnum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: plate: text: plate @@ -435,7 +432,7 @@ enums: YesNoEnum: name: YesNoEnum description: replaces DnaDnaseEnum and DnaseRnaEnum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: 'no': text: 'no' @@ -451,7 +448,7 @@ enums: - They might also be applicable to other classes - They are intended to enable metadata search and or filtering, for example in the NMDC data portal, https://data.microbiomedata.org/ - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - category tag permissible_values: @@ -478,7 +475,7 @@ enums: title: National Science Foundation's National Ecological Observatory Network file type enum: name: file type enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: Metagenome Raw Reads: text: Metagenome Raw Reads @@ -865,7 +862,7 @@ enums: name: credit enum comments: - credit enums come from https://casrai.org/credit/ - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: Conceptualization: text: Conceptualization @@ -923,7 +920,7 @@ enums: notes: - This will become the range of processing_institution.omics processing - use ROR meanings like https://ror.org/0168r3w48 for UCSD - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc permissible_values: UCSD: text: UCSD @@ -951,7 +948,7 @@ enums: ContainerTypeEnum: name: ContainerTypeEnum title: Container type enumeration - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep permissible_values: screw_top_conical: text: screw_top_conical @@ -961,7 +958,7 @@ enums: DeviceTypeEnum: name: DeviceTypeEnum title: Shaker type enumeration - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep permissible_values: orbital_shaker: text: orbital_shaker @@ -971,7 +968,7 @@ enums: title: Thermomixer SamplingMethodEnum: name: SamplingMethodEnum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep permissible_values: weighing: text: weighing @@ -979,7 +976,7 @@ enums: SolventEnum: name: SolventEnum title: Solvent enumeration - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep permissible_values: deionized_water: text: deionized_water @@ -996,7 +993,7 @@ enums: title: Chloroform analysis_type_enum: name: analysis_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/sample_id + from_schema: https://w3id.org/nmdc/portal/sample_id permissible_values: metabolomics: text: metabolomics @@ -1010,7 +1007,7 @@ enums: text: natural organic matter rna_sample_format_enum: name: rna_sample_format_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metatranscriptomics + from_schema: https://w3id.org/nmdc/portal/jgi_metatranscriptomics permissible_values: 10 mM Tris-HCl: text: 10 mM Tris-HCl @@ -1038,7 +1035,7 @@ enums: text: Gentegra-RNA dna_sample_format_enum: name: dna_sample_format_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metagenomics + from_schema: https://w3id.org/nmdc/portal/jgi_metagenomics permissible_values: 10 mM Tris-HCl: text: 10 mM Tris-HCl @@ -1066,24 +1063,84 @@ enums: text: Gentegra-RNA sample_type_enum: name: sample_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/emsl + from_schema: https://w3id.org/nmdc/portal/emsl permissible_values: soil: text: soil water_extract_soil: text: water_extract_soil - door_comp_type_enum: - name: door_comp_type_enum + wall_loc_enum: + name: wall_loc_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - metal covered: - text: metal covered - revolving: - text: revolving - sliding: - text: sliding - telescopic: - text: telescopic + north: + text: north + south: + text: south + east: + text: east + west: + text: west + wall_texture_enum: + name: wall_texture_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + crows feet: + text: crows feet + crows-foot stomp: + text: crows-foot stomp + ? '' + : text: '' + double skip: + text: double skip + hawk and trowel: + text: hawk and trowel + knockdown: + text: knockdown + popcorn: + text: popcorn + orange peel: + text: orange peel + rosebud stomp: + text: rosebud stomp + Santa-Fe texture: + text: Santa-Fe texture + skip trowel: + text: skip trowel + smooth: + text: smooth + stomp knockdown: + text: stomp knockdown + swirl: + text: swirl + door_type_metal_enum: + name: door_type_metal_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + collapsible: + text: collapsible + corrugated steel: + text: corrugated steel + hollow: + text: hollow + rolling shutters: + text: rolling shutters + steel plate: + text: steel plate + water_feat_type_enum: + name: water_feat_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + fountain: + text: fountain + pool: + text: pool + standing feature: + text: standing feature + stream: + text: stream + waterfall: + text: waterfall organism_count_enum: name: organism_count_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml @@ -1094,164 +1151,118 @@ enums: text: MPN other: text: other - light_type_enum: - name: light_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - natural light: - text: natural light - electric light: - text: electric light - desk lamp: - text: desk lamp - flourescent lights: - text: flourescent lights - none: - text: none - freq_clean_enum: - name: freq_clean_enum + growth_habit_enum: + name: growth_habit_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Daily: - text: Daily - Weekly: - text: Weekly - Monthly: - text: Monthly - Quarterly: - text: Quarterly - Annually: - text: Annually - other: - text: other - substructure_type_enum: - name: substructure_type_enum + erect: + text: erect + semi-erect: + text: semi-erect + spreading: + text: spreading + prostrate: + text: prostrate + room_samp_pos_enum: + name: room_samp_pos_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - crawlspace: - text: crawlspace - slab on grade: - text: slab on grade - basement: - text: basement - depos_env_enum: - name: depos_env_enum + north corner: + text: north corner + south corner: + text: south corner + west corner: + text: west corner + east corner: + text: east corner + northeast corner: + text: northeast corner + northwest corner: + text: northwest corner + southeast corner: + text: southeast corner + southwest corner: + text: southwest corner + center: + text: center + rel_samp_loc_enum: + name: rel_samp_loc_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Continental - Alluvial: - text: Continental - Alluvial - Continental - Aeolian: - text: Continental - Aeolian - Continental - Fluvial: - text: Continental - Fluvial - Continental - Lacustrine: - text: Continental - Lacustrine - Transitional - Deltaic: - text: Transitional - Deltaic - Transitional - Tidal: - text: Transitional - Tidal - Transitional - Lagoonal: - text: Transitional - Lagoonal - Transitional - Beach: - text: Transitional - Beach - Transitional - Lake: - text: Transitional - Lake - Marine - Shallow: - text: Marine - Shallow - Marine - Deep: - text: Marine - Deep - Marine - Reef: - text: Marine - Reef - Other - Evaporite: - text: Other - Evaporite - Other - Glacial: - text: Other - Glacial - Other - Volcanic: - text: Other - Volcanic - other: - text: other - shading_device_cond_enum: - name: shading_device_cond_enum + edge of car: + text: edge of car + center of car: + text: center of car + under a seat: + text: under a seat + wall_surf_treatment_enum: + name: wall_surf_treatment_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - damaged: - text: damaged - needs repair: - text: needs repair - new: - text: new - rupture: - text: rupture - visible wear: - text: visible wear - quad_pos_enum: - name: quad_pos_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - North side: - text: North side - West side: - text: West side - South side: - text: South side - East side: - text: East side - samp_floor_enum: - name: samp_floor_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - 1st floor: - text: 1st floor - 2nd floor: - text: 2nd floor - basement: - text: basement - lobby: - text: lobby - floor_cond_enum: - name: floor_cond_enum + painted: + text: painted + wall paper: + text: wall paper + no treatment: + text: no treatment + paneling: + text: paneling + stucco: + text: stucco + fabric: + text: fabric + train_line_enum: + name: train_line_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - new: - text: new - visible wear: - text: visible wear - needs repair: - text: needs repair - damaged: - text: damaged - rupture: - text: rupture - specific_enum: - name: specific_enum + red: + text: red + green: + text: green + orange: + text: orange + window_loc_enum: + name: window_loc_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - operation: - text: operation - as built: - text: as built - construction: - text: construction - bid: - text: bid - design: - text: design - photos: - text: photos - ceil_cond_enum: - name: ceil_cond_enum + north: + text: north + south: + text: south + east: + text: east + west: + text: west + ceil_texture_enum: + name: ceil_texture_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - new: - text: new - visible wear: - text: visible wear - needs repair: - text: needs repair - damaged: - text: damaged - rupture: - text: rupture + crows feet: + text: crows feet + crows-foot stomp: + text: crows-foot stomp + double skip: + text: double skip + hawk and trowel: + text: hawk and trowel + knockdown: + text: knockdown + popcorn: + text: popcorn + orange peel: + text: orange peel + rosebud stomp: + text: rosebud stomp + Santa-Fe texture: + text: Santa-Fe texture + skip trowel: + text: skip trowel + smooth: + text: smooth + stomp knockdown: + text: stomp knockdown + swirl: + text: swirl oxy_stat_samp_enum: name: oxy_stat_samp_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml @@ -1262,96 +1273,110 @@ enums: text: anaerobic other: text: other - shading_device_type_enum: - name: shading_device_type_enum + plant_sex_enum: + name: plant_sex_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - bahama shutters: - text: bahama shutters - exterior roll blind: - text: exterior roll blind - gambrel awning: - text: gambrel awning - hood awning: - text: hood awning - porchroller awning: - text: porchroller awning - sarasota shutters: - text: sarasota shutters - slatted aluminum: - text: slatted aluminum - solid aluminum awning: - text: solid aluminum awning - sun screen: - text: sun screen - tree: - text: tree - trellis: - text: trellis - venetian awning: - text: venetian awning - vis_media_enum: - name: vis_media_enum + Androdioecious: + text: Androdioecious + Androecious: + text: Androecious + Androgynous: + text: Androgynous + Androgynomonoecious: + text: Androgynomonoecious + Andromonoecious: + text: Andromonoecious + Bisexual: + text: Bisexual + Dichogamous: + text: Dichogamous + Diclinous: + text: Diclinous + Dioecious: + text: Dioecious + Gynodioecious: + text: Gynodioecious + Gynoecious: + text: Gynoecious + Gynomonoecious: + text: Gynomonoecious + Hermaphroditic: + text: Hermaphroditic + Imperfect: + text: Imperfect + Monoclinous: + text: Monoclinous + Monoecious: + text: Monoecious + Perfect: + text: Perfect + Polygamodioecious: + text: Polygamodioecious + Polygamomonoecious: + text: Polygamomonoecious + Polygamous: + text: Polygamous + Protandrous: + text: Protandrous + Protogynous: + text: Protogynous + Subandroecious: + text: Subandroecious + Subdioecious: + text: Subdioecious + Subgynoecious: + text: Subgynoecious + Synoecious: + text: Synoecious + Trimonoecious: + text: Trimonoecious + Trioecious: + text: Trioecious + Unisexual: + text: Unisexual + ext_wall_orient_enum: + name: ext_wall_orient_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - photos: - text: photos - videos: - text: videos - commonly of the building: - text: commonly of the building - site context (adjacent buildings, vegetation, terrain, streets): - text: site context (adjacent buildings, vegetation, terrain, streets) - interiors: - text: interiors - equipment: - text: equipment - 3D scans: - text: 3D scans - drawings_enum: - name: drawings_enum + north: + text: north + south: + text: south + east: + text: east + west: + text: west + northeast: + text: northeast + southeast: + text: southeast + southwest: + text: southwest + northwest: + text: northwest + furniture_enum: + name: furniture_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - operation: - text: operation - as built: - text: as built - construction: - text: construction - bid: - text: bid - design: - text: design - building navigation map: - text: building navigation map - diagram: - text: diagram - sketch: - text: sketch - window_cover_enum: - name: window_cover_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - blinds: - text: blinds - curtains: - text: curtains - none: - text: none - hc_produced_enum: - name: hc_produced_enum + cabinet: + text: cabinet + chair: + text: chair + desks: + text: desks + sr_lithology_enum: + name: sr_lithology_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Oil: - text: Oil - Gas-Condensate: - text: Gas-Condensate - Gas: - text: Gas - Bitumen: - text: Bitumen - Coalbed Methane: - text: Coalbed Methane + Clastic: + text: Clastic + Carbonate: + text: Carbonate + Coal: + text: Coal + Biosilicieous: + text: Biosilicieous other: text: other train_stop_loc_enum: @@ -1364,140 +1389,282 @@ enums: text: mid downtown: text: downtown - build_occup_type_enum: - name: build_occup_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - office: - text: office - market: - text: market - restaurant: - text: restaurant - residence: - text: residence - school: - text: school - residential: - text: residential - commercial: - text: commercial - low rise: - text: low rise - high rise: - text: high rise - wood framed: - text: wood framed - health care: - text: health care - airport: - text: airport - sports complex: - text: sports complex - rel_samp_loc_enum: - name: rel_samp_loc_enum + substructure_type_enum: + name: substructure_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - edge of car: - text: edge of car - center of car: - text: center of car - under a seat: - text: under a seat - occup_document_enum: - name: occup_document_enum + crawlspace: + text: crawlspace + slab on grade: + text: slab on grade + basement: + text: basement + ceil_finish_mat_enum: + name: ceil_finish_mat_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - automated count: - text: automated count - estimate: - text: estimate - manual count: - text: manual count - videos: - text: videos - weekday_enum: - name: weekday_enum + drywall: + text: drywall + mineral fibre: + text: mineral fibre + tiles: + text: tiles + PVC: + text: PVC + plasterboard: + text: plasterboard + metal: + text: metal + fiberglass: + text: fiberglass + stucco: + text: stucco + mineral wool/calcium silicate: + text: mineral wool/calcium silicate + wood: + text: wood + door_type_enum: + name: door_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Monday: - text: Monday - Tuesday: - text: Tuesday - Wednesday: - text: Wednesday - Thursday: - text: Thursday - Friday: - text: Friday - Saturday: - text: Saturday - Sunday: - text: Sunday - soil_horizon_enum: - name: soil_horizon_enum + composite: + text: composite + metal: + text: metal + wooden: + text: wooden + biol_stat_enum: + name: biol_stat_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - O horizon: - text: O horizon - A horizon: - text: A horizon - E horizon: - text: E horizon - B horizon: - text: B horizon - C horizon: - text: C horizon - R layer: - text: R layer - Permafrost: - text: Permafrost - M horizon: - text: M horizon - room_loc_enum: - name: room_loc_enum + wild: + text: wild + natural: + text: natural + semi-natural: + text: semi-natural + inbred line: + text: inbred line + breeder's line: + text: breeder's line + hybrid: + text: hybrid + clonal selection: + text: clonal selection + mutant: + text: mutant + window_vert_pos_enum: + name: window_vert_pos_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - corner room: - text: corner room - interior room: - text: interior room - exterior wall: - text: exterior wall - indoor_surf_enum: - name: indoor_surf_enum + bottom: + text: bottom + middle: + text: middle + top: + text: top + low: + text: low + high: + text: high + tillage_enum: + name: tillage_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - cabinet: - text: cabinet - ceiling: - text: ceiling - counter top: - text: counter top - door: - text: door - shelving: - text: shelving - vent cover: - text: vent cover - window: - text: window - wall: - text: wall - door_type_wood_enum: - name: door_type_wood_enum + drill: + text: drill + cutting disc: + text: cutting disc + ridge till: + text: ridge till + strip tillage: + text: strip tillage + zonal tillage: + text: zonal tillage + chisel: + text: chisel + tined: + text: tined + mouldboard: + text: mouldboard + disc plough: + text: disc plough + build_docs_enum: + name: build_docs_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - bettened and ledged: - text: bettened and ledged - battened: - text: battened - ledged and braced: - text: ledged and braced - ledged and framed: - text: ledged and framed - ledged, braced and frame: - text: ledged, braced and frame + building information model: + text: building information model + commissioning report: + text: commissioning report + complaint logs: + text: complaint logs + contract administration: + text: contract administration + cost estimate: + text: cost estimate + janitorial schedules or logs: + text: janitorial schedules or logs + maintenance plans: + text: maintenance plans + schedule: + text: schedule + sections: + text: sections + shop drawings: + text: shop drawings + submittals: + text: submittals + ventilation system: + text: ventilation system + windows: + text: windows + window_type_enum: + name: window_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + single-hung sash window: + text: single-hung sash window + horizontal sash window: + text: horizontal sash window + fixed window: + text: fixed window + mech_struc_enum: + name: mech_struc_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + subway: + text: subway + coach: + text: coach + carriage: + text: carriage + elevator: + text: elevator + escalator: + text: escalator + boat: + text: boat + train: + text: train + car: + text: car + bus: + text: bus + door_loc_enum: + name: door_loc_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + north: + text: north + south: + text: south + east: + text: east + west: + text: west + shading_device_cond_enum: + name: shading_device_cond_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + damaged: + text: damaged + needs repair: + text: needs repair + new: + text: new + rupture: + text: rupture + visible wear: + text: visible wear + samp_floor_enum: + name: samp_floor_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + 1st floor: + text: 1st floor + 2nd floor: + text: 2nd floor + basement: + text: basement + lobby: + text: lobby + samp_collect_point_enum: + name: samp_collect_point_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + well: + text: well + test well: + text: test well + drilling rig: + text: drilling rig + wellhead: + text: wellhead + separator: + text: separator + storage tank: + text: storage tank + other: + text: other + sediment_type_enum: + name: sediment_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + biogenous: + text: biogenous + cosmogenous: + text: cosmogenous + hydrogenous: + text: hydrogenous + lithogenous: + text: lithogenous + indoor_space_enum: + name: indoor_space_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + bedroom: + text: bedroom + office: + text: office + bathroom: + text: bathroom + foyer: + text: foyer + kitchen: + text: kitchen + locker room: + text: locker room + hallway: + text: hallway + elevator: + text: elevator + handidness_enum: + name: handidness_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + ambidexterity: + text: ambidexterity + left handedness: + text: left handedness + mixed-handedness: + text: mixed-handedness + right handedness: + text: right handedness + door_type_wood_enum: + name: door_type_wood_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + bettened and ledged: + text: bettened and ledged + battened: + text: battened + ledged and braced: + text: ledged and braced + ledged and framed: + text: ledged and framed + ledged, braced and frame: + text: ledged, braced and frame framed and paneled: text: framed and paneled glashed or sash: @@ -1526,76 +1693,8 @@ enums: text: wood-framed concrete: text: concrete - door_type_metal_enum: - name: door_type_metal_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - collapsible: - text: collapsible - corrugated steel: - text: corrugated steel - hollow: - text: hollow - rolling shutters: - text: rolling shutters - steel plate: - text: steel plate - samp_weather_enum: - name: samp_weather_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - clear sky: - text: clear sky - cloudy: - text: cloudy - foggy: - text: foggy - hail: - text: hail - rain: - text: rain - snow: - text: snow - sleet: - text: sleet - sunny: - text: sunny - windy: - text: windy - ext_window_orient_enum: - name: ext_window_orient_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - northeast: - text: northeast - southeast: - text: southeast - southwest: - text: southwest - northwest: - text: northwest - sediment_type_enum: - name: sediment_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - biogenous: - text: biogenous - cosmogenous: - text: cosmogenous - hydrogenous: - text: hydrogenous - lithogenous: - text: lithogenous - room_condt_enum: - name: room_condt_enum + floor_cond_enum: + name: floor_cond_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: new: @@ -1608,108 +1707,110 @@ enums: text: damaged rupture: text: rupture - visible signs of mold/mildew: - text: visible signs of mold/mildew - sr_dep_env_enum: - name: sr_dep_env_enum + drawings_enum: + name: drawings_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Lacustine: - text: Lacustine - Fluvioldeltaic: - text: Fluvioldeltaic - Fluviomarine: - text: Fluviomarine - Marine: - text: Marine - other: - text: other - wall_surf_treatment_enum: - name: wall_surf_treatment_enum + operation: + text: operation + as built: + text: as built + construction: + text: construction + bid: + text: bid + design: + text: design + building navigation map: + text: building navigation map + diagram: + text: diagram + sketch: + text: sketch + room_condt_enum: + name: room_condt_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - painted: - text: painted - wall paper: - text: wall paper - no treatment: - text: no treatment - paneling: - text: paneling - stucco: - text: stucco - fabric: - text: fabric - water_feat_type_enum: - name: water_feat_type_enum + new: + text: new + visible wear: + text: visible wear + needs repair: + text: needs repair + damaged: + text: damaged + rupture: + text: rupture + visible signs of mold/mildew: + text: visible signs of mold/mildew + hc_produced_enum: + name: hc_produced_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - fountain: - text: fountain - pool: - text: pool - standing feature: - text: standing feature - stream: - text: stream - waterfall: - text: waterfall - window_mat_enum: - name: window_mat_enum + Oil: + text: Oil + Gas-Condensate: + text: Gas-Condensate + Gas: + text: Gas + Bitumen: + text: Bitumen + Coalbed Methane: + text: Coalbed Methane + other: + text: other + surf_material_enum: + name: surf_material_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - clad: - text: clad - fiberglass: - text: fiberglass + adobe: + text: adobe + carpet: + text: carpet + cinder blocks: + text: cinder blocks + concrete: + text: concrete + hay bales: + text: hay bales + glass: + text: glass metal: text: metal + paint: + text: paint + plastic: + text: plastic + stainless steel: + text: stainless steel + stone: + text: stone + stucco: + text: stucco + tile: + text: tile vinyl: text: vinyl wood: text: wood - furniture_enum: - name: furniture_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - cabinet: - text: cabinet - chair: - text: chair - desks: - text: desks - building_setting_enum: - name: building_setting_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - urban: - text: urban - suburban: - text: suburban - exurban: - text: exurban - rural: - text: rural - door_direct_enum: - name: door_direct_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - inward: - text: inward - outward: - text: outward - sideways: - text: sideways - window_horiz_pos_enum: - name: window_horiz_pos_enum + vis_media_enum: + name: vis_media_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - left: - text: left - middle: - text: middle - right: - text: right + photos: + text: photos + videos: + text: videos + commonly of the building: + text: commonly of the building + site context (adjacent buildings, vegetation, terrain, streets): + text: site context (adjacent buildings, vegetation, terrain, streets) + interiors: + text: interiors + equipment: + text: equipment + 3D scans: + text: 3D scans samp_dis_stage_enum: name: samp_dis_stage_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml @@ -1726,493 +1827,154 @@ enums: text: penetration other: text: other - door_cond_enum: - name: door_cond_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - damaged: - text: damaged - needs repair: - text: needs repair - new: - text: new - rupture: - text: rupture - visible wear: - text: visible wear - filter_type_enum: - name: filter_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - particulate air filter: - text: particulate air filter - chemical air filter: - text: chemical air filter - low-MERV pleated media: - text: low-MERV pleated media - HEPA: - text: HEPA - electrostatic: - text: electrostatic - gas-phase or ultraviolet air treatments: - text: gas-phase or ultraviolet air treatments - window_type_enum: - name: window_type_enum + profile_position_enum: + name: profile_position_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - single-hung sash window: - text: single-hung sash window - horizontal sash window: - text: horizontal sash window - fixed window: - text: fixed window - build_docs_enum: - name: build_docs_enum + summit: + text: summit + shoulder: + text: shoulder + backslope: + text: backslope + footslope: + text: footslope + toeslope: + text: toeslope + building_setting_enum: + name: building_setting_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - building information model: - text: building information model - commissioning report: - text: commissioning report - complaint logs: - text: complaint logs - contract administration: - text: contract administration - cost estimate: - text: cost estimate - janitorial schedules or logs: - text: janitorial schedules or logs - maintenance plans: - text: maintenance plans - schedule: - text: schedule - sections: - text: sections - shop drawings: - text: shop drawings - submittals: - text: submittals - ventilation system: - text: ventilation system - windows: - text: windows - cur_land_use_enum: - name: cur_land_use_enum + urban: + text: urban + suburban: + text: suburban + exurban: + text: exurban + rural: + text: rural + sr_geol_age_enum: + name: sr_geol_age_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - badlands: - text: badlands - cities: - text: cities - conifers: - text: conifers - annotations: - originally: - tag: originally - value: conifers (e.g. pine,spruce,fir,cypress) - examples: - - value: cypress - - value: fir - - value: pine - - value: spruce - crop trees: - text: crop trees - annotations: - originally: - tag: originally - value: crop trees (nuts,fruit,christmas trees,nursery trees) - examples: - - value: christmas trees - - value: fruit - - value: nursery trees - - value: nuts - farmstead: - text: farmstead - gravel: - text: gravel - hardwoods: - text: hardwoods - annotations: - originally: - tag: originally - value: hardwoods (e.g. oak,hickory,elm,aspen) - examples: - - value: aspen - - value: elm - - value: hickory - - value: oak - hayland: - text: hayland - horticultural plants: - text: horticultural plants - annotations: - originally: - tag: originally - value: horticultural plants (e.g. tulips) - examples: - - value: tulips - industrial areas: - text: industrial areas - intermixed hardwood and conifers: - text: intermixed hardwood and conifers - marshlands: - text: marshlands - annotations: - originally: - tag: originally - value: marshlands (grass,sedges,rushes) - examples: - - value: grass - - value: rushes - - value: sedgees - meadows: - text: meadows - annotations: - originally: - tag: originally - value: meadows (grasses,alfalfa,fescue,bromegrass,timothy) - examples: - - value: alfalfa - - value: bromegrass - - value: fescue - - value: grasses - - value: timothy - mines/quarries: - text: mines/quarries - mudflats: - text: mudflats - oil waste areas: - text: oil waste areas - pastureland: - text: pastureland - annotations: - originally: - tag: originally - value: pastureland (grasslands used for livestock grazing) - comments: - - grasslands used for livestock grazing - permanent snow or ice: - text: permanent snow or ice - rainforest: - text: rainforest - annotations: - originally: - tag: originally - value: rainforest (evergreen forest receiving greater than 406 cm annual - rainfall) - comments: - - evergreen forest receiving greater than 406 cm annual rainfall - rangeland: - text: rangeland - roads/railroads: - text: roads/railroads - rock: - text: rock - row crops: - text: row crops - saline seeps: - text: saline seeps - salt flats: - text: salt flats - sand: - text: sand - shrub crops: - text: shrub crops - annotations: - originally: - tag: originally - value: shrub crops (blueberries,nursery ornamentals,filberts) - examples: - - value: blueberries - - value: filberts - - value: nursery ornamentals - shrub land: - text: shrub land - annotations: - originally: - tag: originally - value: shrub land (e.g. mesquite,sage-brush,creosote bush,shrub oak,eucalyptus) - examples: - - value: creosote bush - - value: eucalyptus - - value: mesquite - - value: sage-brush - - value: shrub oak - small grains: - text: small grains - successional shrub land: - text: successional shrub land - annotations: - originally: - tag: originally - value: successional shrub land (tree saplings,hazels,sumacs,chokecherry,shrub - dogwoods,blackberries) - examples: - - value: blackberries - - value: chokecherry - - value: hazels - - value: shrub dogwoods - - value: sumacs - - value: tree saplings - swamp: - text: swamp - annotations: - originally: - tag: originally - value: swamp (permanent or semi-permanent water body dominated by woody - plants) - comments: - - permanent or semi-permanent water body dominated by woody plants - tropical: - text: tropical - annotations: - originally: - tag: originally - value: tropical (e.g. mangrove,palms) - examples: - - value: mangrove - - value: palms - tundra: - text: tundra - annotations: - originally: - tag: originally - value: tundra (mosses,lichens) - examples: - - value: lichens - - value: mosses - vegetable crops: - text: vegetable crops - vine crops: - text: vine crops - annotations: - originally: - tag: originally - value: vine crops (grapes) - examples: - - value: grapes - host_sex_enum: - name: host_sex_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - female: - text: female - hermaphrodite: - text: hermaphrodite - male: - text: male - neuter: - text: neuter - samp_collect_point_enum: - name: samp_collect_point_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - well: - text: well - test well: - text: test well - drilling rig: - text: drilling rig - wellhead: - text: wellhead - separator: - text: separator - storage tank: - text: storage tank + Archean: + text: Archean + Cambrian: + text: Cambrian + Carboniferous: + text: Carboniferous + Cenozoic: + text: Cenozoic + Cretaceous: + text: Cretaceous + Devonian: + text: Devonian + Jurassic: + text: Jurassic + Mesozoic: + text: Mesozoic + Neogene: + text: Neogene + Ordovician: + text: Ordovician + Paleogene: + text: Paleogene + Paleozoic: + text: Paleozoic + Permian: + text: Permian + Precambrian: + text: Precambrian + Proterozoic: + text: Proterozoic + Silurian: + text: Silurian + Triassic: + text: Triassic other: text: other - train_line_enum: - name: train_line_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - red: - text: red - green: - text: green - orange: - text: orange - mech_struc_enum: - name: mech_struc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - subway: - text: subway - coach: - text: coach - carriage: - text: carriage - elevator: - text: elevator - escalator: - text: escalator - boat: - text: boat - train: - text: train - car: - text: car - bus: - text: bus - lithology_enum: - name: lithology_enum + samp_capt_status_enum: + name: samp_capt_status_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Basement: - text: Basement - Chalk: - text: Chalk - Chert: - text: Chert - Coal: - text: Coal - Conglomerate: - text: Conglomerate - Diatomite: - text: Diatomite - Dolomite: - text: Dolomite - Limestone: - text: Limestone - Sandstone: - text: Sandstone - Shale: - text: Shale - Siltstone: - text: Siltstone - Volcanic: - text: Volcanic + active surveillance in response to an outbreak: + text: active surveillance in response to an outbreak + active surveillance not initiated by an outbreak: + text: active surveillance not initiated by an outbreak + farm sample: + text: farm sample + market sample: + text: market sample other: text: other - door_mat_enum: - name: door_mat_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - aluminum: - text: aluminum - cellular PVC: - text: cellular PVC - engineered plastic: - text: engineered plastic - fiberboard: - text: fiberboard - fiberglass: - text: fiberglass - metal: - text: metal - thermoplastic alloy: - text: thermoplastic alloy - vinyl: - text: vinyl - wood: - text: wood - wood/plastic composite: - text: wood/plastic composite - floor_water_mold_enum: - name: floor_water_mold_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - mold odor: - text: mold odor - wet floor: - text: wet floor - water stains: - text: water stains - wall discoloration: - text: wall discoloration - floor discoloration: - text: floor discoloration - ceiling discoloration: - text: ceiling discoloration - peeling paint or wallpaper: - text: peeling paint or wallpaper - bulging walls: - text: bulging walls - condensation: - text: condensation - surf_air_cont_enum: - name: surf_air_cont_enum + soil_horizon_enum: + name: soil_horizon_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - dust: - text: dust - organic matter: - text: organic matter - particulate matter: - text: particulate matter - volatile organic compounds: - text: volatile organic compounds - biological contaminants: - text: biological contaminants - radon: - text: radon - nutrients: - text: nutrients - biocides: - text: biocides - ceil_finish_mat_enum: - name: ceil_finish_mat_enum + O horizon: + text: O horizon + A horizon: + text: A horizon + E horizon: + text: E horizon + B horizon: + text: B horizon + C horizon: + text: C horizon + R layer: + text: R layer + Permafrost: + text: Permafrost + M horizon: + text: M horizon + ext_window_orient_enum: + name: ext_window_orient_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - drywall: - text: drywall - mineral fibre: - text: mineral fibre - tiles: - text: tiles - PVC: - text: PVC - plasterboard: - text: plasterboard - metal: - text: metal - fiberglass: - text: fiberglass - stucco: - text: stucco - mineral wool/calcium silicate: - text: mineral wool/calcium silicate - wood: - text: wood - samp_md_enum: - name: samp_md_enum + north: + text: north + south: + text: south + east: + text: east + west: + text: west + northeast: + text: northeast + southeast: + text: southeast + southwest: + text: southwest + northwest: + text: northwest + heat_deliv_loc_enum: + name: heat_deliv_loc_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - DF: - text: DF - RT: - text: RT - KB: - text: KB - MSL: - text: MSL - other: - text: other - wall_finish_mat_enum: - name: wall_finish_mat_enum + north: + text: north + south: + text: south + east: + text: east + west: + text: west + door_move_enum: + name: door_move_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - plaster: - text: plaster - gypsum plaster: - text: gypsum plaster - veneer plaster: - text: veneer plaster - gypsum board: - text: gypsum board - tile: - text: tile - terrazzo: - text: terrazzo - stone facing: - text: stone facing - acoustical treatment: - text: acoustical treatment - wood: - text: wood - metal: - text: metal - masonry: - text: masonry + collapsible: + text: collapsible + folding: + text: folding + revolving: + text: revolving + rolling shutter: + text: rolling shutter + sliding: + text: sliding + swinging: + text: swinging floor_finish_mat_enum: name: floor_finish_mat_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml @@ -2253,264 +2015,164 @@ enums: text: paint none or unfinished: text: none or unfinished - sr_kerog_type_enum: - name: sr_kerog_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - Type I: - text: Type I - Type II: - text: Type II - Type III: - text: Type III - Type IV: - text: Type IV - other: - text: other - biotic_relationship_enum: - name: biotic_relationship_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - free living: - text: free living - parasite: - text: parasite - commensal: - text: commensal - symbiont: - text: symbiont - room_connected_enum: - name: room_connected_enum + tidal_stage_enum: + name: tidal_stage_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - attic: - text: attic - bathroom: - text: bathroom - closet: - text: closet - conference room: - text: conference room - elevator: - text: elevator - examining room: - text: examining room - hallway: - text: hallway - kitchen: - text: kitchen - mail room: - text: mail room - office: - text: office - stairwell: - text: stairwell - growth_habit_enum: - name: growth_habit_enum + low tide: + text: low tide + ebb tide: + text: ebb tide + flood tide: + text: flood tide + high tide: + text: high tide + train_stat_loc_enum: + name: train_stat_loc_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - erect: - text: erect - semi-erect: - text: semi-erect - spreading: - text: spreading - prostrate: - text: prostrate - samp_subtype_enum: - name: samp_subtype_enum + south station above ground: + text: south station above ground + south station underground: + text: south station underground + south station amtrak: + text: south station amtrak + forest hills: + text: forest hills + riverside: + text: riverside + lithology_enum: + name: lithology_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - oil phase: - text: oil phase - water phase: - text: water phase - biofilm: - text: biofilm - not applicable: - text: not applicable + Basement: + text: Basement + Chalk: + text: Chalk + Chert: + text: Chert + Coal: + text: Coal + Conglomerate: + text: Conglomerate + Diatomite: + text: Diatomite + Dolomite: + text: Dolomite + Limestone: + text: Limestone + Sandstone: + text: Sandstone + Shale: + text: Shale + Siltstone: + text: Siltstone + Volcanic: + text: Volcanic other: text: other - plant_growth_med_enum: - name: plant_growth_med_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - other artificial liquid medium: - text: other artificial liquid medium - other artificial solid medium: - text: other artificial solid medium - peat moss: - text: peat moss - perlite: - text: perlite - pumice: - text: pumice - sand: - text: sand - soil: - text: soil - vermiculite: - text: vermiculite - water: - text: water - ext_wall_orient_enum: - name: ext_wall_orient_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - northeast: - text: northeast - southeast: - text: southeast - southwest: - text: southwest - northwest: - text: northwest - door_move_enum: - name: door_move_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - collapsible: - text: collapsible - folding: - text: folding - revolving: - text: revolving - rolling shutter: - text: rolling shutter - sliding: - text: sliding - swinging: - text: swinging - ceil_type_enum: - name: ceil_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - cathedral: - text: cathedral - dropped: - text: dropped - concave: - text: concave - barrel-shaped: - text: barrel-shaped - coffered: - text: coffered - cove: - text: cove - stretched: - text: stretched - heat_cool_type_enum: - name: heat_cool_type_enum + hcr_geol_age_enum: + name: hcr_geol_age_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - radiant system: - text: radiant system - heat pump: - text: heat pump - forced air system: - text: forced air system - steam forced heat: - text: steam forced heat - wood stove: - text: wood stove - window_vert_pos_enum: - name: window_vert_pos_enum + Archean: + text: Archean + Cambrian: + text: Cambrian + Carboniferous: + text: Carboniferous + Cenozoic: + text: Cenozoic + Cretaceous: + text: Cretaceous + Devonian: + text: Devonian + Jurassic: + text: Jurassic + Mesozoic: + text: Mesozoic + Neogene: + text: Neogene + Ordovician: + text: Ordovician + Paleogene: + text: Paleogene + Paleozoic: + text: Paleozoic + Permian: + text: Permian + Precambrian: + text: Precambrian + Proterozoic: + text: Proterozoic + Silurian: + text: Silurian + Triassic: + text: Triassic + other: + text: other + hcr_enum: + name: hcr_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - bottom: - text: bottom - middle: - text: middle - top: - text: top - low: - text: low - high: - text: high - indoor_space_enum: - name: indoor_space_enum + Oil Reservoir: + text: Oil Reservoir + Gas Reservoir: + text: Gas Reservoir + Oil Sand: + text: Oil Sand + Coalbed: + text: Coalbed + Shale: + text: Shale + Tight Oil Reservoir: + text: Tight Oil Reservoir + Tight Gas Reservoir: + text: Tight Gas Reservoir + other: + text: other + build_occup_type_enum: + name: build_occup_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - bedroom: - text: bedroom office: text: office - bathroom: - text: bathroom - foyer: - text: foyer - kitchen: - text: kitchen - locker room: - text: locker room - hallway: - text: hallway - elevator: - text: elevator - tidal_stage_enum: - name: tidal_stage_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - low tide: - text: low tide - ebb tide: - text: ebb tide - flood tide: - text: flood tide - high tide: - text: high tide - wall_texture_enum: - name: wall_texture_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - permissible_values: - crows feet: - text: crows feet - crows-foot stomp: - text: crows-foot stomp - ? '' - : text: '' - double skip: - text: double skip - hawk and trowel: - text: hawk and trowel - knockdown: - text: knockdown - popcorn: - text: popcorn - orange peel: - text: orange peel - rosebud stomp: - text: rosebud stomp - Santa-Fe texture: - text: Santa-Fe texture - skip trowel: - text: skip trowel - smooth: - text: smooth - stomp knockdown: - text: stomp knockdown - swirl: - text: swirl - door_type_enum: - name: door_type_enum + market: + text: market + restaurant: + text: restaurant + residence: + text: residence + school: + text: school + residential: + text: residential + commercial: + text: commercial + low rise: + text: low rise + high rise: + text: high rise + wood framed: + text: wood framed + health care: + text: health care + airport: + text: airport + sports complex: + text: sports complex + window_cover_enum: + name: window_cover_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - composite: - text: composite - metal: - text: metal - wooden: - text: wooden - int_wall_cond_enum: - name: int_wall_cond_enum + blinds: + text: blinds + curtains: + text: curtains + none: + text: none + ceil_cond_enum: + name: ceil_cond_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: new: @@ -2523,272 +2185,250 @@ enums: text: damaged rupture: text: rupture - profile_position_enum: - name: profile_position_enum + plant_growth_med_enum: + name: plant_growth_med_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - summit: - text: summit - shoulder: - text: shoulder - backslope: - text: backslope - footslope: - text: footslope - toeslope: - text: toeslope - arch_struc_enum: - name: arch_struc_enum + other artificial liquid medium: + text: other artificial liquid medium + other artificial solid medium: + text: other artificial solid medium + peat moss: + text: peat moss + perlite: + text: perlite + pumice: + text: pumice + sand: + text: sand + soil: + text: soil + vermiculite: + text: vermiculite + water: + text: water + samp_md_enum: + name: samp_md_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - building: - text: building - shed: - text: shed - home: - text: home - surf_material_enum: - name: surf_material_enum + DF: + text: DF + RT: + text: RT + KB: + text: KB + MSL: + text: MSL + other: + text: other + door_direct_enum: + name: door_direct_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - adobe: - text: adobe - carpet: - text: carpet - cinder blocks: - text: cinder blocks - concrete: - text: concrete - hay bales: - text: hay bales - glass: - text: glass - metal: - text: metal - paint: - text: paint - plastic: - text: plastic - stainless steel: - text: stainless steel - stone: - text: stone - stucco: - text: stucco - tile: - text: tile - vinyl: - text: vinyl - wood: - text: wood - season_use_enum: - name: season_use_enum + inward: + text: inward + outward: + text: outward + sideways: + text: sideways + sr_dep_env_enum: + name: sr_dep_env_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Spring: - text: Spring - Summer: - text: Summer - Fall: - text: Fall - Winter: - text: Winter - drainage_class_enum: - name: drainage_class_enum + Lacustine: + text: Lacustine + Fluvioldeltaic: + text: Fluvioldeltaic + Fluviomarine: + text: Fluviomarine + Marine: + text: Marine + other: + text: other + window_mat_enum: + name: window_mat_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + clad: + text: clad + fiberglass: + text: fiberglass + metal: + text: metal + vinyl: + text: vinyl + wood: + text: wood + sr_kerog_type_enum: + name: sr_kerog_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - very poorly: - text: very poorly - poorly: - text: poorly - somewhat poorly: - text: somewhat poorly - moderately well: - text: moderately well - well: - text: well - excessively drained: - text: excessively drained - wall_loc_enum: - name: wall_loc_enum + Type I: + text: Type I + Type II: + text: Type II + Type III: + text: Type III + Type IV: + text: Type IV + other: + text: other + window_horiz_pos_enum: + name: window_horiz_pos_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - biol_stat_enum: - name: biol_stat_enum + left: + text: left + middle: + text: middle + right: + text: right + wall_finish_mat_enum: + name: wall_finish_mat_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - wild: - text: wild - natural: - text: natural - semi-natural: - text: semi-natural - inbred line: - text: inbred line - breeder's line: - text: breeder's line - hybrid: - text: hybrid - clonal selection: - text: clonal selection - mutant: - text: mutant - sr_lithology_enum: - name: sr_lithology_enum + plaster: + text: plaster + gypsum plaster: + text: gypsum plaster + veneer plaster: + text: veneer plaster + gypsum board: + text: gypsum board + tile: + text: tile + terrazzo: + text: terrazzo + stone facing: + text: stone facing + acoustical treatment: + text: acoustical treatment + wood: + text: wood + metal: + text: metal + masonry: + text: masonry + depos_env_enum: + name: depos_env_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Clastic: - text: Clastic - Carbonate: - text: Carbonate - Coal: - text: Coal - Biosilicieous: - text: Biosilicieous + Continental - Alluvial: + text: Continental - Alluvial + Continental - Aeolian: + text: Continental - Aeolian + Continental - Fluvial: + text: Continental - Fluvial + Continental - Lacustrine: + text: Continental - Lacustrine + Transitional - Deltaic: + text: Transitional - Deltaic + Transitional - Tidal: + text: Transitional - Tidal + Transitional - Lagoonal: + text: Transitional - Lagoonal + Transitional - Beach: + text: Transitional - Beach + Transitional - Lake: + text: Transitional - Lake + Marine - Shallow: + text: Marine - Shallow + Marine - Deep: + text: Marine - Deep + Marine - Reef: + text: Marine - Reef + Other - Evaporite: + text: Other - Evaporite + Other - Glacial: + text: Other - Glacial + Other - Volcanic: + text: Other - Volcanic other: text: other - hcr_geol_age_enum: - name: hcr_geol_age_enum + indoor_surf_enum: + name: indoor_surf_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Archean: - text: Archean - Cambrian: - text: Cambrian - Carboniferous: - text: Carboniferous - Cenozoic: - text: Cenozoic - Cretaceous: - text: Cretaceous - Devonian: - text: Devonian - Jurassic: - text: Jurassic - Mesozoic: - text: Mesozoic - Neogene: - text: Neogene - Ordovician: - text: Ordovician - Paleogene: - text: Paleogene - Paleozoic: - text: Paleozoic - Permian: - text: Permian - Precambrian: - text: Precambrian - Proterozoic: - text: Proterozoic - Silurian: - text: Silurian - Triassic: - text: Triassic - other: - text: other - fao_class_enum: - name: fao_class_enum + cabinet: + text: cabinet + ceiling: + text: ceiling + counter top: + text: counter top + door: + text: door + shelving: + text: shelving + vent cover: + text: vent cover + window: + text: window + wall: + text: wall + floor_water_mold_enum: + name: floor_water_mold_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Acrisols: - text: Acrisols - Andosols: - text: Andosols - Arenosols: - text: Arenosols - Cambisols: - text: Cambisols - Chernozems: - text: Chernozems - Ferralsols: - text: Ferralsols - Fluvisols: - text: Fluvisols - Gleysols: - text: Gleysols - Greyzems: - text: Greyzems - Gypsisols: - text: Gypsisols - Histosols: - text: Histosols - Kastanozems: - text: Kastanozems - Lithosols: - text: Lithosols - Luvisols: - text: Luvisols - Nitosols: - text: Nitosols - Phaeozems: - text: Phaeozems - Planosols: - text: Planosols - Podzols: - text: Podzols - Podzoluvisols: - text: Podzoluvisols - Rankers: - text: Rankers - Regosols: - text: Regosols - Rendzinas: - text: Rendzinas - Solonchaks: - text: Solonchaks - Solonetz: - text: Solonetz - Vertisols: - text: Vertisols - Yermosols: - text: Yermosols - wall_const_type_enum: - name: wall_const_type_enum + mold odor: + text: mold odor + wet floor: + text: wet floor + water stains: + text: water stains + wall discoloration: + text: wall discoloration + floor discoloration: + text: floor discoloration + ceiling discoloration: + text: ceiling discoloration + peeling paint or wallpaper: + text: peeling paint or wallpaper + bulging walls: + text: bulging walls + condensation: + text: condensation + freq_clean_enum: + name: freq_clean_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - frame construction: - text: frame construction - joisted masonry: - text: joisted masonry - light noncombustible: - text: light noncombustible - masonry noncombustible: - text: masonry noncombustible - modified fire resistive: - text: modified fire resistive - fire resistive: - text: fire resistive - room_samp_pos_enum: - name: room_samp_pos_enum + Daily: + text: Daily + Weekly: + text: Weekly + Monthly: + text: Monthly + Quarterly: + text: Quarterly + Annually: + text: Annually + other: + text: other + heat_cool_type_enum: + name: heat_cool_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - north corner: - text: north corner - south corner: - text: south corner - west corner: - text: west corner - east corner: - text: east corner - northeast corner: - text: northeast corner - northwest corner: - text: northwest corner - southeast corner: - text: southeast corner - southwest corner: - text: southwest corner - center: - text: center + radiant system: + text: radiant system + heat pump: + text: heat pump + forced air system: + text: forced air system + steam forced heat: + text: steam forced heat + wood stove: + text: wood stove + door_comp_type_enum: + name: door_comp_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + metal covered: + text: metal covered + revolving: + text: revolving + sliding: + text: sliding + telescopic: + text: telescopic window_cond_enum: name: window_cond_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml @@ -2803,124 +2443,180 @@ enums: text: rupture visible wear: text: visible wear - sr_geol_age_enum: - name: sr_geol_age_enum + ceil_type_enum: + name: ceil_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Archean: - text: Archean - Cambrian: - text: Cambrian - Carboniferous: - text: Carboniferous - Cenozoic: - text: Cenozoic - Cretaceous: - text: Cretaceous - Devonian: - text: Devonian - Jurassic: - text: Jurassic - Mesozoic: - text: Mesozoic - Neogene: - text: Neogene - Ordovician: - text: Ordovician - Paleogene: - text: Paleogene - Paleozoic: - text: Paleozoic - Permian: - text: Permian - Precambrian: - text: Precambrian - Proterozoic: - text: Proterozoic - Silurian: - text: Silurian - Triassic: - text: Triassic + cathedral: + text: cathedral + dropped: + text: dropped + concave: + text: concave + barrel-shaped: + text: barrel-shaped + coffered: + text: coffered + cove: + text: cove + stretched: + text: stretched + biotic_relationship_enum: + name: biotic_relationship_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + free living: + text: free living + parasite: + text: parasite + commensal: + text: commensal + symbiont: + text: symbiont + samp_subtype_enum: + name: samp_subtype_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + oil phase: + text: oil phase + water phase: + text: water phase + biofilm: + text: biofilm + not applicable: + text: not applicable other: text: other - tillage_enum: - name: tillage_enum + shading_device_type_enum: + name: shading_device_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - drill: - text: drill - cutting disc: - text: cutting disc - ridge till: - text: ridge till - strip tillage: - text: strip tillage - zonal tillage: - text: zonal tillage - chisel: - text: chisel - tined: - text: tined - mouldboard: - text: mouldboard - disc plough: - text: disc plough - heat_deliv_loc_enum: - name: heat_deliv_loc_enum + bahama shutters: + text: bahama shutters + exterior roll blind: + text: exterior roll blind + gambrel awning: + text: gambrel awning + hood awning: + text: hood awning + porchroller awning: + text: porchroller awning + sarasota shutters: + text: sarasota shutters + slatted aluminum: + text: slatted aluminum + solid aluminum awning: + text: solid aluminum awning + sun screen: + text: sun screen + tree: + text: tree + trellis: + text: trellis + venetian awning: + text: venetian awning + specific_enum: + name: specific_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - handidness_enum: - name: handidness_enum + operation: + text: operation + as built: + text: as built + construction: + text: construction + bid: + text: bid + design: + text: design + photos: + text: photos + season_use_enum: + name: season_use_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - ambidexterity: - text: ambidexterity - left handedness: - text: left handedness - mixed-handedness: - text: mixed-handedness - right handedness: - text: right handedness - hcr_enum: - name: hcr_enum + Spring: + text: Spring + Summer: + text: Summer + Fall: + text: Fall + Winter: + text: Winter + door_cond_enum: + name: door_cond_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + damaged: + text: damaged + needs repair: + text: needs repair + new: + text: new + rupture: + text: rupture + visible wear: + text: visible wear + quad_pos_enum: + name: quad_pos_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Oil Reservoir: - text: Oil Reservoir - Gas Reservoir: - text: Gas Reservoir - Oil Sand: - text: Oil Sand - Coalbed: - text: Coalbed - Shale: - text: Shale - Tight Oil Reservoir: - text: Tight Oil Reservoir - Tight Gas Reservoir: - text: Tight Gas Reservoir - other: - text: other - window_loc_enum: - name: window_loc_enum + North side: + text: North side + West side: + text: West side + South side: + text: South side + East side: + text: East side + samp_weather_enum: + name: samp_weather_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west + clear sky: + text: clear sky + cloudy: + text: cloudy + foggy: + text: foggy + hail: + text: hail + rain: + text: rain + snow: + text: snow + sleet: + text: sleet + sunny: + text: sunny + windy: + text: windy + room_connected_enum: + name: room_connected_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + attic: + text: attic + bathroom: + text: bathroom + closet: + text: closet + conference room: + text: conference room + elevator: + text: elevator + examining room: + text: examining room + hallway: + text: hallway + kitchen: + text: kitchen + mail room: + text: mail room + office: + text: office + stairwell: + text: stairwell gender_restroom_enum: name: gender_restroom_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml @@ -2937,276 +2633,577 @@ enums: text: male and female unisex: text: unisex - ceil_texture_enum: - name: ceil_texture_enum + host_sex_enum: + name: host_sex_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - crows feet: - text: crows feet - crows-foot stomp: - text: crows-foot stomp - double skip: - text: double skip - hawk and trowel: - text: hawk and trowel - knockdown: - text: knockdown - popcorn: - text: popcorn - orange peel: - text: orange peel - rosebud stomp: - text: rosebud stomp - Santa-Fe texture: - text: Santa-Fe texture - skip trowel: - text: skip trowel - smooth: - text: smooth - stomp knockdown: - text: stomp knockdown - swirl: - text: swirl - train_stat_loc_enum: - name: train_stat_loc_enum + female: + text: female + hermaphrodite: + text: hermaphrodite + male: + text: male + neuter: + text: neuter + weekday_enum: + name: weekday_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + Monday: + text: Monday + Tuesday: + text: Tuesday + Wednesday: + text: Wednesday + Thursday: + text: Thursday + Friday: + text: Friday + Saturday: + text: Saturday + Sunday: + text: Sunday + surf_air_cont_enum: + name: surf_air_cont_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + dust: + text: dust + organic matter: + text: organic matter + particulate matter: + text: particulate matter + volatile organic compounds: + text: volatile organic compounds + biological contaminants: + text: biological contaminants + radon: + text: radon + nutrients: + text: nutrients + biocides: + text: biocides + filter_type_enum: + name: filter_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + particulate air filter: + text: particulate air filter + chemical air filter: + text: chemical air filter + low-MERV pleated media: + text: low-MERV pleated media + HEPA: + text: HEPA + electrostatic: + text: electrostatic + gas-phase or ultraviolet air treatments: + text: gas-phase or ultraviolet air treatments + light_type_enum: + name: light_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + natural light: + text: natural light + electric light: + text: electric light + desk lamp: + text: desk lamp + flourescent lights: + text: flourescent lights + none: + text: none + arch_struc_enum: + name: arch_struc_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + building: + text: building + shed: + text: shed + home: + text: home + wall_const_type_enum: + name: wall_const_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + frame construction: + text: frame construction + joisted masonry: + text: joisted masonry + light noncombustible: + text: light noncombustible + masonry noncombustible: + text: masonry noncombustible + modified fire resistive: + text: modified fire resistive + fire resistive: + text: fire resistive + occup_document_enum: + name: occup_document_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + automated count: + text: automated count + estimate: + text: estimate + manual count: + text: manual count + videos: + text: videos + drainage_class_enum: + name: drainage_class_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + very poorly: + text: very poorly + poorly: + text: poorly + somewhat poorly: + text: somewhat poorly + moderately well: + text: moderately well + well: + text: well + excessively drained: + text: excessively drained + room_type_enum: + name: room_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + permissible_values: + attic: + text: attic + bathroom: + text: bathroom + closet: + text: closet + conference room: + text: conference room + elevator: + text: elevator + examining room: + text: examining room + hallway: + text: hallway + kitchen: + text: kitchen + mail room: + text: mail room + private office: + text: private office + open office: + text: open office + stairwell: + text: stairwell + ',restroom': + text: ',restroom' + lobby: + text: lobby + vestibule: + text: vestibule + mechanical or electrical room: + text: mechanical or electrical room + data center: + text: data center + laboratory_wet: + text: laboratory_wet + laboratory_dry: + text: laboratory_dry + gymnasium: + text: gymnasium + natatorium: + text: natatorium + auditorium: + text: auditorium + lockers: + text: lockers + cafe: + text: cafe + warehouse: + text: warehouse + room_loc_enum: + name: room_loc_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - south station above ground: - text: south station above ground - south station underground: - text: south station underground - south station amtrak: - text: south station amtrak - forest hills: - text: forest hills - riverside: - text: riverside - plant_sex_enum: - name: plant_sex_enum + corner room: + text: corner room + interior room: + text: interior room + exterior wall: + text: exterior wall + int_wall_cond_enum: + name: int_wall_cond_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - Androdioecious: - text: Androdioecious - Androecious: - text: Androecious - Androgynous: - text: Androgynous - Androgynomonoecious: - text: Androgynomonoecious - Andromonoecious: - text: Andromonoecious - Bisexual: - text: Bisexual - Dichogamous: - text: Dichogamous - Diclinous: - text: Diclinous - Dioecious: - text: Dioecious - Gynodioecious: - text: Gynodioecious - Gynoecious: - text: Gynoecious - Gynomonoecious: - text: Gynomonoecious - Hermaphroditic: - text: Hermaphroditic - Imperfect: - text: Imperfect - Monoclinous: - text: Monoclinous - Monoecious: - text: Monoecious - Perfect: - text: Perfect - Polygamodioecious: - text: Polygamodioecious - Polygamomonoecious: - text: Polygamomonoecious - Polygamous: - text: Polygamous - Protandrous: - text: Protandrous - Protogynous: - text: Protogynous - Subandroecious: - text: Subandroecious - Subdioecious: - text: Subdioecious - Subgynoecious: - text: Subgynoecious - Synoecious: - text: Synoecious - Trimonoecious: - text: Trimonoecious - Trioecious: - text: Trioecious - Unisexual: - text: Unisexual - door_loc_enum: - name: door_loc_enum + new: + text: new + visible wear: + text: visible wear + needs repair: + text: needs repair + damaged: + text: damaged + rupture: + text: rupture + cur_land_use_enum: + name: cur_land_use_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - room_type_enum: - name: room_type_enum + badlands: + text: badlands + cities: + text: cities + conifers: + text: conifers + annotations: + originally: + tag: originally + value: conifers (e.g. pine,spruce,fir,cypress) + examples: + - value: cypress + - value: fir + - value: pine + - value: spruce + crop trees: + text: crop trees + annotations: + originally: + tag: originally + value: crop trees (nuts,fruit,christmas trees,nursery trees) + examples: + - value: christmas trees + - value: fruit + - value: nursery trees + - value: nuts + farmstead: + text: farmstead + gravel: + text: gravel + hardwoods: + text: hardwoods + annotations: + originally: + tag: originally + value: hardwoods (e.g. oak,hickory,elm,aspen) + examples: + - value: aspen + - value: elm + - value: hickory + - value: oak + hayland: + text: hayland + horticultural plants: + text: horticultural plants + annotations: + originally: + tag: originally + value: horticultural plants (e.g. tulips) + examples: + - value: tulips + industrial areas: + text: industrial areas + intermixed hardwood and conifers: + text: intermixed hardwood and conifers + marshlands: + text: marshlands + annotations: + originally: + tag: originally + value: marshlands (grass,sedges,rushes) + examples: + - value: grass + - value: rushes + - value: sedgees + meadows: + text: meadows + annotations: + originally: + tag: originally + value: meadows (grasses,alfalfa,fescue,bromegrass,timothy) + examples: + - value: alfalfa + - value: bromegrass + - value: fescue + - value: grasses + - value: timothy + mines/quarries: + text: mines/quarries + mudflats: + text: mudflats + oil waste areas: + text: oil waste areas + pastureland: + text: pastureland + annotations: + originally: + tag: originally + value: pastureland (grasslands used for livestock grazing) + comments: + - grasslands used for livestock grazing + permanent snow or ice: + text: permanent snow or ice + rainforest: + text: rainforest + annotations: + originally: + tag: originally + value: rainforest (evergreen forest receiving greater than 406 cm annual + rainfall) + comments: + - evergreen forest receiving greater than 406 cm annual rainfall + rangeland: + text: rangeland + roads/railroads: + text: roads/railroads + rock: + text: rock + row crops: + text: row crops + saline seeps: + text: saline seeps + salt flats: + text: salt flats + sand: + text: sand + shrub crops: + text: shrub crops + annotations: + originally: + tag: originally + value: shrub crops (blueberries,nursery ornamentals,filberts) + examples: + - value: blueberries + - value: filberts + - value: nursery ornamentals + shrub land: + text: shrub land + annotations: + originally: + tag: originally + value: shrub land (e.g. mesquite,sage-brush,creosote bush,shrub oak,eucalyptus) + examples: + - value: creosote bush + - value: eucalyptus + - value: mesquite + - value: sage-brush + - value: shrub oak + small grains: + text: small grains + successional shrub land: + text: successional shrub land + annotations: + originally: + tag: originally + value: successional shrub land (tree saplings,hazels,sumacs,chokecherry,shrub + dogwoods,blackberries) + examples: + - value: blackberries + - value: chokecherry + - value: hazels + - value: shrub dogwoods + - value: sumacs + - value: tree saplings + swamp: + text: swamp + annotations: + originally: + tag: originally + value: swamp (permanent or semi-permanent water body dominated by woody + plants) + comments: + - permanent or semi-permanent water body dominated by woody plants + tropical: + text: tropical + annotations: + originally: + tag: originally + value: tropical (e.g. mangrove,palms) + examples: + - value: mangrove + - value: palms + tundra: + text: tundra + annotations: + originally: + tag: originally + value: tundra (mosses,lichens) + examples: + - value: lichens + - value: mosses + vegetable crops: + text: vegetable crops + vine crops: + text: vine crops + annotations: + originally: + tag: originally + value: vine crops (grapes) + examples: + - value: grapes + door_mat_enum: + name: door_mat_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - attic: - text: attic - bathroom: - text: bathroom - closet: - text: closet - conference room: - text: conference room - elevator: - text: elevator - examining room: - text: examining room - hallway: - text: hallway - kitchen: - text: kitchen - mail room: - text: mail room - private office: - text: private office - open office: - text: open office - stairwell: - text: stairwell - ',restroom': - text: ',restroom' - lobby: - text: lobby - vestibule: - text: vestibule - mechanical or electrical room: - text: mechanical or electrical room - data center: - text: data center - laboratory_wet: - text: laboratory_wet - laboratory_dry: - text: laboratory_dry - gymnasium: - text: gymnasium - natatorium: - text: natatorium - auditorium: - text: auditorium - lockers: - text: lockers - cafe: - text: cafe - warehouse: - text: warehouse - samp_capt_status_enum: - name: samp_capt_status_enum + aluminum: + text: aluminum + cellular PVC: + text: cellular PVC + engineered plastic: + text: engineered plastic + fiberboard: + text: fiberboard + fiberglass: + text: fiberglass + metal: + text: metal + thermoplastic alloy: + text: thermoplastic alloy + vinyl: + text: vinyl + wood: + text: wood + wood/plastic composite: + text: wood/plastic composite + fao_class_enum: + name: fao_class_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml permissible_values: - active surveillance in response to an outbreak: - text: active surveillance in response to an outbreak - active surveillance not initiated by an outbreak: - text: active surveillance not initiated by an outbreak - farm sample: - text: farm sample - market sample: - text: market sample - other: - text: other + Acrisols: + text: Acrisols + Andosols: + text: Andosols + Arenosols: + text: Arenosols + Cambisols: + text: Cambisols + Chernozems: + text: Chernozems + Ferralsols: + text: Ferralsols + Fluvisols: + text: Fluvisols + Gleysols: + text: Gleysols + Greyzems: + text: Greyzems + Gypsisols: + text: Gypsisols + Histosols: + text: Histosols + Kastanozems: + text: Kastanozems + Lithosols: + text: Lithosols + Luvisols: + text: Luvisols + Nitosols: + text: Nitosols + Phaeozems: + text: Phaeozems + Planosols: + text: Planosols + Podzols: + text: Podzols + Podzoluvisols: + text: Podzoluvisols + Rankers: + text: Rankers + Regosols: + text: Regosols + Rendzinas: + text: Rendzinas + Solonchaks: + text: Solonchaks + Solonetz: + text: Solonetz + Vertisols: + text: Vertisols + Yermosols: + text: Yermosols slots: neon_deims_sdr_link: name: neon_deims_sdr_link - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string neon_eco_type: name: neon_eco_type - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string neon_soil_type: name: neon_soil_type - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string ecosystem_path_id: name: ecosystem_path_id description: A unique id representing the GOLD classifers associated with a sample. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string habitat: name: habitat - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string location: name: location - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string community: name: community - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string ncbi_taxonomy_name: name: ncbi_taxonomy_name - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string ncbi_project_name: name: ncbi_project_name - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string sample_collection_site: name: sample_collection_site - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string sample_collection_year: name: sample_collection_year - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer sample_collection_month: name: sample_collection_month - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc status: name: status - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: StatusEnum library_preparation_kit: name: library_preparation_kit - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string extraction_method: name: extraction_method - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc extraction_target: name: extraction_target - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: ExtractionTargetEnum quality_control_report: name: quality_control_report - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: QualityControlReport pcr_cycles: name: pcr_cycles - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc exact_mappings: - OBI:0002475 range: integer sample_mass: name: sample_mass - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: QuantityValue library_type: name: library_type title: library type examples: - value: DNA - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: LibraryTypeEnum zinc: name: zinc @@ -3224,7 +3221,7 @@ slots: title: zinc examples: - value: 2.5 mg/kg - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://www.ornl.gov/content/bio-scales-0 aliases: @@ -3247,7 +3244,7 @@ slots: title: manganese examples: - value: 24.7 mg/kg - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://www.ornl.gov/content/bio-scales-0 aliases: @@ -3270,7 +3267,7 @@ slots: title: ammonium nitrogen examples: - value: 2.3 mg/kg - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://www.ornl.gov/content/bio-scales-0 aliases: @@ -3296,7 +3293,7 @@ slots: - often below some specified limit of detection examples: - value: 0.29 mg/kg - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://www.ornl.gov/content/bio-scales-0 aliases: @@ -3320,7 +3317,7 @@ slots: title: nitrite_nitrogen examples: - value: 1.2 mg/kg - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://www.ornl.gov/content/bio-scales-0 aliases: @@ -3347,7 +3344,7 @@ slots: one pH unit examples: - value: 543 mg/kg - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://www.ornl.gov/content/bio-scales-0 - https://secure.caes.uga.edu/extension/publications/files/pdf/C%20874_5.PDF @@ -3376,7 +3373,7 @@ slots: one pH unit examples: - value: 1575 mg/kg - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://www.ornl.gov/content/bio-scales-0 aliases: @@ -3393,7 +3390,7 @@ slots: subtables and can be reported in_subset: - mixs extension - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - environmental package is_a: attribute @@ -3406,7 +3403,7 @@ slots: - first apply to Biosample - try to apply to all Biosamples in a particular nmdc-server SubmissionMetadata? - applying to a Study may nto be granular enough - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: boolean recommended: true collected_from: @@ -3416,43 +3413,43 @@ slots: - add an OBO slot_uri ? comments: - this illustrates implementing a Biosample relation with a (binary) slot - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc domain: Biosample range: FieldResearchSite biosample_categories: name: biosample_categories title: Categories the biosample belongs to - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: true range: biosample_category_enum date_created: name: date_created description: from database class - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc etl_software_version: name: etl_software_version description: from database class - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc related_identifiers: name: related_identifiers description: Identifiers assigned to a thing that is similar to that which is represented in NMDC. Related identifier are not an identical match and may have some variation. title: Related Identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc notes: name: notes description: from study class - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc canary: name: canary description: a slot that can be added and removed as evidence that schema changes have propagated to other systems - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc ess_dive_datasets: name: ess_dive_datasets description: List of ESS-DIVE dataset DOIs - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: true has_credit_associations: name: has_credit_associations @@ -3465,7 +3462,7 @@ slots: semantics: person should get credit X for their participation in the study' notes: - 'had just been "inlined: true"' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc domain: Study slot_uri: prov:qualifiedAssociation multivalued: true @@ -3474,26 +3471,26 @@ slots: study_image: name: study_image description: Links a study to one or more images. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc domain: Study multivalued: true range: ImageValue inlined: true relevant_protocols: name: relevant_protocols - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: true range: string funding_sources: name: funding_sources - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc multivalued: true range: string applied_role: name: applied_role deprecated: A credit association may have multiple roles. So, use the applied roles slot. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc domain: CreditAssociation slot_uri: prov:hadRole range: credit enum @@ -3505,7 +3502,7 @@ slots: value: 'Identify all CRediT roles associated with this contributor. CRediT Information: https://info.orcid.org/credit-for-research-contribution ; CRediT: https://credit.niso.org/' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc domain: CreditAssociation multivalued: true range: credit enum @@ -3516,7 +3513,7 @@ slots: - prov:agent takes an Agent object. Is a person value an Agent? Also try to relate to principal investigator slot? could include OBI:0000103 principal investigator role... do we need to define the OBI prefix? - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc domain: CreditAssociation range: PersonValue required: true @@ -3525,7 +3522,7 @@ slots: description: Applies to a property that links a database object to a set of objects. This is necessary in a json document to provide context for a list, and to allow for a single json object that combines multiple object types - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixin: true domain: Database multivalued: true @@ -3534,7 +3531,7 @@ slots: name: biosample_set description: This property links a database object to the set of samples within it. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3544,7 +3541,7 @@ slots: name: study_set description: This property links a database object to the set of studies within it. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3552,14 +3549,14 @@ slots: range: Study field_research_site_set: name: field_research_site_set - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc domain: Database multivalued: true range: FieldResearchSite inlined_as_list: true collecting_biosamples_from_site_set: name: collecting_biosamples_from_site_set - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc domain: Database multivalued: true range: CollectingBiosamplesFromSite @@ -3568,7 +3565,7 @@ slots: name: data_object_set description: This property links a database object to the set of data objects within it. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3577,7 +3574,7 @@ slots: genome_feature_set: name: genome_feature_set description: This property links a database object to the set of all features - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3587,7 +3584,7 @@ slots: name: functional_annotation_set description: This property links a database object to the set of all functional annotations - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3596,7 +3593,7 @@ slots: activity_set: name: activity_set description: This property links a database object to the set of workflow activities. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3606,7 +3603,7 @@ slots: name: mags_activity_set description: This property links a database object to the set of MAGs analysis activities. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3616,7 +3613,7 @@ slots: name: metabolomics_analysis_activity_set description: This property links a database object to the set of metabolomics analysis activities. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3626,7 +3623,7 @@ slots: name: metaproteomics_analysis_activity_set description: This property links a database object to the set of metaproteomics analysis activities. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3636,7 +3633,7 @@ slots: name: metagenome_annotation_activity_set description: This property links a database object to the set of metagenome annotation activities. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3646,7 +3643,7 @@ slots: name: metagenome_assembly_set description: This property links a database object to the set of metagenome assembly activities. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3656,7 +3653,7 @@ slots: name: metagenome_sequencing_activity_set description: This property links a database object to the set of metagenome sequencing activities. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3666,7 +3663,7 @@ slots: name: metatranscriptome_activity_set description: This property links a database object to the set of metatranscriptome analysis activities. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3676,7 +3673,7 @@ slots: name: read_qc_analysis_activity_set description: This property links a database object to the set of read QC analysis activities. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3686,7 +3683,7 @@ slots: name: read_based_taxonomy_analysis_activity_set description: This property links a database object to the set of read based analysis activities. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3696,7 +3693,7 @@ slots: name: nom_analysis_activity_set description: This property links a database object to the set of natural organic matter (NOM) analysis activities. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3706,7 +3703,7 @@ slots: name: omics_processing_set description: This property links a database object to the set of omics processings within it. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3714,7 +3711,7 @@ slots: range: OmicsProcessing pooling_set: name: pooling_set - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3724,7 +3721,7 @@ slots: name: processed_sample_set description: This property links a database object to the set of processed samples within it. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3734,7 +3731,7 @@ slots: name: extraction_set description: This property links a database object to the set of extractions within it. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc mixins: - object_set domain: Database @@ -3744,7 +3741,7 @@ slots: name: library_preparation_set description: This property links a database object to the set of DNA extractions within it. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - library_construction_set mixins: @@ -3761,7 +3758,7 @@ slots: examples: - value: metatranscriptome - value: metagenome - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: ControlledTermValue data_object_type: name: data_object_type @@ -3769,7 +3766,7 @@ slots: examples: - value: FT ICR-MS Analysis Results - value: GC-MS Metabolomics Results - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: file type enum compression_type: name: compression_type @@ -3778,16 +3775,16 @@ slots: - consider enum examples: - value: gzip - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string instrument_name: name: instrument_name description: The name of the instrument that was used for processing the sample. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc gold_path_field: name: gold_path_field description: This is a grouping for any of the gold path fields - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: attribute abstract: true range: string @@ -3804,7 +3801,7 @@ slots: are Environmental, Host-associated, and Engineered. They represent samples collected from a natural environment or from another organism or from engineered environments like bioreactors respectively. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://gold.jgi.doe.gov/help is_a: gold_path_field @@ -3818,7 +3815,7 @@ slots: Ecosystem categories for Host-associated samples can be individual hosts or phyla and for engineered samples it may be manipulated environments like bioreactors, solid waste etc. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://gold.jgi.doe.gov/help is_a: gold_path_field @@ -3833,7 +3830,7 @@ slots: or Thermal springs etc. Ecosystem category Air may have Indoor air or Outdoor air as different Ecosystem Types. In the case of Host-associated samples, ecosystem type can represent Respiratory system, Digestive system, Roots etc. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://gold.jgi.doe.gov/help is_a: gold_path_field @@ -3846,7 +3843,7 @@ slots: - Ecosystem Type Marine (Environmental -> Aquatic -> Marine) is further divided (for example) into Intertidal zone, Coastal, Pelagic, Intertidal zone etc. in the Ecosystem subtype category. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://gold.jgi.doe.gov/help is_a: gold_path_field @@ -3858,44 +3855,44 @@ slots: comments: - Specific ecosystems help to define samples based on very specific characteristics of an environment under the five-level classification system. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://gold.jgi.doe.gov/help is_a: gold_path_field principal_investigator: name: principal_investigator description: Principal Investigator who led the study and/or generated the dataset. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - PI is_a: attribute range: PersonValue doi: name: doi - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: attribute range: AttributeValue add_date: name: add_date description: The date on which the information was added to the database. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string mod_date: name: mod_date description: The last date on which the database information was modified. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string sample_collection_day: name: sample_collection_day - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer sample_collection_hour: name: sample_collection_hour - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer sample_collection_minute: name: sample_collection_minute - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: integer salinity_category: name: salinity_category @@ -3903,91 +3900,91 @@ slots: halotolerant, hypersaline, huryhaline' notes: - maps to gold:salinity - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc see_also: - https://github.com/microbiomedata/nmdc-metadata/pull/297 range: string soluble_iron_micromol: name: soluble_iron_micromol - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string host_name: name: host_name - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string subsurface_depth: name: subsurface_depth - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: QuantityValue proport_woa_temperature: name: proport_woa_temperature - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string biogas_temperature: name: biogas_temperature - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string soil_annual_season_temp: name: soil_annual_season_temp - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string biogas_retention_time: name: biogas_retention_time - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string processing_institution: name: processing_institution description: The organization that processed the sample. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: processing_institution_enum completion_date: name: completion_date - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc range: string metagenome_assembly_parameter: name: metagenome_assembly_parameter - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity has_peptide_quantifications: name: has_peptide_quantifications - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity multivalued: true range: PeptideQuantification asm_score: name: asm_score description: A score for comparing metagenomic assembly quality from same sample. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: metagenome_assembly_parameter range: float scaffolds: name: scaffolds description: Total sequence count of all scaffolds. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: metagenome_assembly_parameter range: float scaf_logsum: name: scaf_logsum description: The sum of the (length*log(length)) of all scaffolds, times some constant. Increase the contiguity, the score will increase - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: metagenome_assembly_parameter range: float scaf_powsum: name: scaf_powsum description: Powersum of all scaffolds is the same as logsum except that it uses the sum of (length*(length^P)) for some power P (default P=0.25). - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: metagenome_assembly_parameter range: float scaf_max: name: scaf_max description: Maximum scaffold length. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: metagenome_assembly_parameter range: float scaf_bp: name: scaf_bp description: Total size in bp of all scaffolds. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: metagenome_assembly_parameter range: float scaf_n50: @@ -3995,7 +3992,7 @@ slots: description: Given a set of scaffolds, each with its own length, the N50 count is defined as the smallest number of scaffolds whose length sum makes up half of genome size. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: metagenome_assembly_parameter range: float scaf_n90: @@ -4003,14 +4000,14 @@ slots: description: Given a set of scaffolds, each with its own length, the N90 count is defined as the smallest number of scaffolds whose length sum makes up 90% of genome size. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: metagenome_assembly_parameter range: float scaf_l50: name: scaf_l50 description: Given a set of scaffolds, the L50 is defined as the sequence length of the shortest scaffold at 50% of the total genome length. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: metagenome_assembly_parameter range: float scaf_l90: @@ -4018,38 +4015,38 @@ slots: description: The L90 statistic is less than or equal to the L50 statistic; it is the length for which the collection of all scaffolds of that length or longer contains at least 90% of the sum of the lengths of all scaffolds. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: metagenome_assembly_parameter range: float scaf_n_gt50k: name: scaf_n_gt50k description: Total sequence count of scaffolds greater than 50 KB. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: metagenome_assembly_parameter range: float scaf_l_gt50k: name: scaf_l_gt50k description: Total size in bp of all scaffolds greater than 50 KB. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: metagenome_assembly_parameter range: float scaf_pct_gt50k: name: scaf_pct_gt50k description: Total sequence size percentage of scaffolds greater than 50 KB. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: metagenome_assembly_parameter range: float contigs: name: contigs description: The sum of the (length*log(length)) of all contigs, times some constant. Increase the contiguity, the score will increase - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: metagenome_assembly_parameter range: float contig_bp: name: contig_bp description: Total size in bp of all contigs. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: metagenome_assembly_parameter range: float ctg_n50: @@ -4057,14 +4054,14 @@ slots: description: Given a set of contigs, each with its own length, the N50 count is defined as the smallest number_of_contigs whose length sum makes up half of genome size. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: metagenome_assembly_parameter range: float ctg_l50: name: ctg_l50 description: Given a set of contigs, the L50 is defined as the sequence length of the shortest contig at 50% of the total genome length. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: metagenome_assembly_parameter range: float ctg_n90: @@ -4072,7 +4069,7 @@ slots: description: Given a set of contigs, each with its own length, the N90 count is defined as the smallest number of contigs whose length sum makes up 90% of genome size. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: metagenome_assembly_parameter range: float ctg_l90: @@ -4080,221 +4077,221 @@ slots: description: The L90 statistic is less than or equal to the L50 statistic; it is the length for which the collection of all contigs of that length or longer contains at least 90% of the sum of the lengths of all contigs. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: metagenome_assembly_parameter range: float ctg_logsum: name: ctg_logsum description: Maximum contig length. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: metagenome_assembly_parameter range: float ctg_powsum: name: ctg_powsum description: Powersum of all contigs is the same as logsum except that it uses the sum of (length*(length^P)) for some power P (default P=0.25). - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: metagenome_assembly_parameter range: float ctg_max: name: ctg_max description: Maximum contig length. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: metagenome_assembly_parameter range: float gap_pct: name: gap_pct description: The gap size percentage of all scaffolds. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: metagenome_assembly_parameter range: float gc_std: name: gc_std description: Standard deviation of GC content of all contigs. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: metagenome_assembly_parameter range: float gc_avg: name: gc_avg description: Average of GC content of all contigs. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: metagenome_assembly_parameter range: float num_input_reads: name: num_input_reads description: The sequence count number of input reads for assembly. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: metagenome_assembly_parameter range: float num_aligned_reads: name: num_aligned_reads description: The sequence count number of input reads aligned to assembled contigs. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: metagenome_assembly_parameter range: float read_qc_analysis_statistic: name: read_qc_analysis_statistic - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity mags_list: name: mags_list - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity multivalued: true range: MagBin too_short_contig_num: name: too_short_contig_num - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity range: integer binned_contig_num: name: binned_contig_num - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity range: integer input_contig_num: name: input_contig_num - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity range: integer unbinned_contig_num: name: unbinned_contig_num - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity range: integer low_depth_contig_num: name: low_depth_contig_num - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity range: integer input_read_count: name: input_read_count description: The sequence count number of input reads for QC analysis. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: read_qc_analysis_statistic range: float input_base_count: name: input_base_count description: The nucleotide base count number of input reads for QC analysis. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: read_qc_analysis_statistic range: float output_read_count: name: output_read_count description: After QC analysis sequence count number. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: read_qc_analysis_statistic range: float output_base_count: name: output_base_count description: After QC analysis nucleotide base count number. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: read_qc_analysis_statistic range: float output_read_bases: name: output_read_bases description: TODO - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity range: float input_read_bases: name: input_read_bases description: 'TODO ' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity range: float has_calibration: name: has_calibration description: A reference to a file that holds calibration information. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity range: string has_metabolite_quantifications: name: has_metabolite_quantifications - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity multivalued: true range: MetaboliteQuantification version: name: version - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity total_bases: name: total_bases todos: - this slot needs some basic textual annotations and constraints - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core members_id: name: members_id todos: - this slot needs some basic textual annotations and constraints - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core bin_name: name: bin_name - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core range: string number_of_contig: name: number_of_contig - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core range: integer completeness: name: completeness - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core range: float contamination: name: contamination - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core range: float gene_count: name: gene_count - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core range: integer bin_quality: name: bin_quality - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core range: string num_16s: name: num_16s - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core range: integer num_5s: name: num_5s - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core range: integer num_23s: name: num_23s - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core range: integer num_t_rna: name: num_t_rna - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core range: integer gtdbtk_domain: name: gtdbtk_domain - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core range: string gtdbtk_phylum: name: gtdbtk_phylum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core range: string gtdbtk_class: name: gtdbtk_class - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core range: string gtdbtk_order: name: gtdbtk_order - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core range: string gtdbtk_family: name: gtdbtk_family - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core range: string gtdbtk_genus: name: gtdbtk_genus - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core range: string gtdbtk_species: name: gtdbtk_species - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core range: string language: name: language description: Should use ISO 639-1 code e.g. "en", "fr" - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core range: language code attribute: name: attribute description: 'A attribute of a biosample. Examples: depth, habitat, material. For NMDC, attributes SHOULD be mapped to terms within a MIxS template' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core aliases: - field - property @@ -4306,14 +4303,14 @@ slots: name: has_raw_value description: The value that was specified for an annotation in raw form, i.e. a string. E.g. "2 cm" or "2-4 cm" - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core domain: AttributeValue multivalued: false range: string has_unit: name: has_unit description: Links a QuantityValue to a unit - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core aliases: - scale mappings: @@ -4323,7 +4320,7 @@ slots: has_numeric_value: name: has_numeric_value description: Links a quantity value to a number - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core mappings: - qud:quantityValue - schema:value @@ -4333,18 +4330,18 @@ slots: name: has_minimum_numeric_value description: The minimum value part, expressed as number, of the quantity value when the value covers a range. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core is_a: has_numeric_value has_maximum_numeric_value: name: has_maximum_numeric_value description: The maximum value part, expressed as number, of the quantity value when the value covers a range. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core is_a: has_numeric_value has_boolean_value: name: has_boolean_value description: Links a quantity value to a boolean - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core multivalued: false range: boolean latitude: @@ -4352,7 +4349,7 @@ slots: description: latitude examples: - value: '-33.460524' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core mappings: - schema:latitude domain: GeolocationValue @@ -4363,7 +4360,7 @@ slots: description: longitude examples: - value: '150.168149' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core mappings: - schema:longitude domain: GeolocationValue @@ -4374,38 +4371,38 @@ slots: description: pointer to an ontology class notes: - 'removed ''slot_uri: rdf:type''' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core domain: ControlledTermValue range: OntologyClass inlined: true orcid: name: orcid description: The ORCID of a person. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core domain: PersonValue range: string email: name: email description: An email address for an entity such as a person. This should be the primary email address used. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core slot_uri: schema:email range: string alternate_emails: name: alternate_emails description: One or more other email addresses for an entity. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core range: string profile_image_url: name: profile_image_url description: A url that points to an image of a person. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core domain: PersonValue range: string has_input: name: has_input description: An input to a process. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core aliases: - input domain: NamedThing @@ -4414,7 +4411,7 @@ slots: has_output: name: has_output description: An output biosample to a processing step - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core aliases: - output domain: NamedThing @@ -4424,7 +4421,7 @@ slots: name: part_of description: Links a resource to another resource that either logically or physically includes it. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core aliases: - is part of domain: NamedThing @@ -4434,44 +4431,44 @@ slots: execution_resource: name: execution_resource description: 'Example: NERSC-Cori' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core is_a: attribute url: name: url notes: - See issue 207 - this clashes with the mixs field - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core is_a: attribute range: string display_order: name: display_order description: When rendering information, this attribute to specify the order in which the information should be rendered. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core is_a: attribute git_url: name: git_url description: 'Example: https://github.com/microbiomedata/mg_annotation/releases/tag/0.1' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core is_a: attribute range: string file_size_bytes: name: file_size_bytes description: Size of the file in bytes - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core is_a: attribute range: bytes md5_checksum: name: md5_checksum description: MD5 checksum of file (pre-compressed) - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core is_a: attribute range: string abstract: name: abstract description: The abstract of manuscript/grant associated with the entity; i.e., a summary of the resource. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core exact_mappings: - dcterms:abstract range: string @@ -4479,7 +4476,7 @@ slots: name: keywords description: A list of keywords that used to associate the entity. Keywords SHOULD come from controlled vocabularies, including MESH, ENVO. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core mappings: - dcterms:subject multivalued: true @@ -4488,7 +4485,7 @@ slots: name: objective description: The scientific objectives associated with the entity. It SHOULD correspond to scientific norms for objectives field in a structured abstract. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core mappings: - sio:000337 multivalued: false @@ -4496,95 +4493,95 @@ slots: websites: name: websites description: A list of websites that are associated with the entity. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core multivalued: true range: string publications: name: publications description: A list of publications that are associated with the entity. The publications SHOULD be given using an identifier, such as a DOI or Pubmed ID, if possible. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core multivalued: true range: string highest_similarity_score: name: highest_similarity_score description: 'TODO: Yuri to fill in' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core range: float metabolite_quantified: name: metabolite_quantified description: the specific metabolite identifier - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core range: ChemicalEntity all_proteins: name: all_proteins description: the list of protein identifiers that are associated with the peptide sequence - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core multivalued: true range: GeneProduct best_protein: name: best_protein description: the specific protein identifier most correctly associated with the peptide sequence - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core range: GeneProduct min_q_value: name: min_q_value description: smallest Q-Value associated with the peptide sequence as provided by MSGFPlus tool - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core see_also: - OBI:0001442 range: float peptide_sequence: name: peptide_sequence - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core range: string peptide_spectral_count: name: peptide_spectral_count description: sum of filter passing MS2 spectra associated with the peptide sequence within a given LC-MS/MS data file - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core range: integer peptide_sum_masic_abundance: name: peptide_sum_masic_abundance description: combined MS1 extracted ion chromatograms derived from MS2 spectra associated with the peptide sequence from a given LC-MS/MS data file using the MASIC tool - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core range: integer chemical_formula: name: chemical_formula - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core inchi_key: name: inchi_key notes: - 'key set to false due to rare collisions: Pletnev I, Erin A, McNaught A, Blinov K, Tchekhovskoi D, Heller S (2012) InChIKey collision resistance: an experimental testing. J Cheminform. 4:12' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core inchi: name: inchi - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core peptide_sequence_count: name: peptide_sequence_count - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core protein_spectral_count: name: protein_spectral_count - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core protein_sum_masic_abundance: name: protein_sum_masic_abundance - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core smiles: name: smiles - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core started_at_time: name: started_at_time notes: - 'The regex for ISO-8601 format was taken from here: https://www.myintervals.com/blog/2009/05/20/iso-8601-date-validation-that-doesnt-suck/ It may not be complete, but it is good enough for now.' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/prov + from_schema: https://w3id.org/nmdc/prov mappings: - prov:startedAtTime range: datetime @@ -4594,26 +4591,26 @@ slots: notes: - 'The regex for ISO-8601 format was taken from here: https://www.myintervals.com/blog/2009/05/20/iso-8601-date-validation-that-doesnt-suck/ It may not be complete, but it is good enough for now.' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/prov + from_schema: https://w3id.org/nmdc/prov mappings: - prov:endedAtTime range: datetime pattern: ^([\+-]?\d{4}(?!\d{2}\b))((-?)((0[1-9]|1[0-2])(\3([12]\d|0[1-9]|3[01]))?|W([0-4]\d|5[0-2])(-?[1-7])?|(00[1-9]|0[1-9]\d|[12]\d{2}|3([0-5]\d|6[1-6])))([T\s]((([01]\d|2[0-3])((:?)[0-5]\d)?|24\:?00)([\.,]\d+(?!:))?)?(\17[0-5]\d([\.,]\d+)?)?([zZ]|([\+-])([01]\d|2[0-3]):?([0-5]\d)?)?)?)?$ was_informed_by: name: was_informed_by - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/prov + from_schema: https://w3id.org/nmdc/prov mappings: - prov:wasInformedBy range: Activity was_generated_by: name: was_generated_by - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/prov + from_schema: https://w3id.org/nmdc/prov mappings: - prov:wasGeneratedBy range: Activity used: name: used - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/prov + from_schema: https://w3id.org/nmdc/prov mappings: - prov:used domain: Activity @@ -4632,19 +4629,19 @@ slots: examples: - value: nmdc:mgmag-00-x012.1_7_c1 description: https://github.com/microbiomedata/nmdc-schema/pull/499#discussion_r1018499248 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/basic_slots + from_schema: https://w3id.org/nmdc/basic_slots identifier: true range: uriorcurie required: true name: name: name description: A human readable label for an entity - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/basic_slots + from_schema: https://w3id.org/nmdc/basic_slots range: string description: name: description description: a human-readable description of a thing - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/basic_slots + from_schema: https://w3id.org/nmdc/basic_slots slot_uri: dcterms:description range: string type: @@ -4657,7 +4654,7 @@ slots: examples: - value: nmdc:Biosample - value: nmdc:Study - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/basic_slots + from_schema: https://w3id.org/nmdc/basic_slots range: string title: name: title @@ -4665,7 +4662,7 @@ slots: assigned to it. For example, when extracting study information for GOLD, the GOLD system has assigned a name/label. However, for display purposes, we may also wish the capture the title of the proposal that was used to fund the study. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/basic_slots + from_schema: https://w3id.org/nmdc/basic_slots exact_mappings: - dcterms:title range: string @@ -4673,7 +4670,7 @@ slots: name: alternative_titles description: A list of alternative titles for the entity. The distinction between title and alternative titles is application-specific. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/basic_slots + from_schema: https://w3id.org/nmdc/basic_slots exact_mappings: - dcterms:alternative multivalued: true @@ -4682,7 +4679,7 @@ slots: name: alternative_names description: A list of alternative names used to refer to the entity. The distinction between name and alternative names is application-specific. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/basic_slots + from_schema: https://w3id.org/nmdc/basic_slots exact_mappings: - dcterms:alternative - skos:altLabel @@ -4692,13 +4689,13 @@ slots: name: alternative_descriptions description: A list of alternative descriptions for the entity. The distinction between description and alternative descriptions is application-specific. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/basic_slots + from_schema: https://w3id.org/nmdc/basic_slots multivalued: true range: string alternative_identifiers: name: alternative_identifiers description: A list of alternative identifiers for the entity. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/basic_slots + from_schema: https://w3id.org/nmdc/basic_slots multivalued: true range: uriorcurie pattern: ^[a-zA-Z_][a-zA-Z0-9_]*:[a-zA-Z_][a-zA-Z0-9_]*$ @@ -4711,7 +4708,7 @@ slots: - We are using string representations of dates until all components of our ecosystem can handle ISO 8610 dates - The date should be formatted as YYYY-MM-DD - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/basic_slots + from_schema: https://w3id.org/nmdc/basic_slots range: string end_date: name: end_date @@ -4722,19 +4719,19 @@ slots: - We are using string representations of dates until all components of our ecosystem can handle ISO 8610 dates - The date should be formatted as YYYY-MM-DD - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/basic_slots + from_schema: https://w3id.org/nmdc/basic_slots range: string protocol_link: name: protocol_link - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/basic_slots + from_schema: https://w3id.org/nmdc/basic_slots range: Protocol nucleic_acid_concentration: name: nucleic_acid_concentration - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/basic_slots + from_schema: https://w3id.org/nmdc/basic_slots range: InstrumentValue biomaterial_purity: name: biomaterial_purity - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/basic_slots + from_schema: https://w3id.org/nmdc/basic_slots range: QuantityValue external_database_identifiers: name: external_database_identifiers @@ -4743,7 +4740,7 @@ slots: - had tried ranges of external identifier and string comments: - The value of this field is always a registered CURIE - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers close_mappings: - skos:closeMatch is_a: alternative_identifiers @@ -4760,26 +4757,26 @@ slots: - add is_a or mixin modeling, like other external_database_identifiers - what class would IMG records belong to?! Are they Studies, Biosamples, or something else? - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers is_a: external_database_identifiers pattern: ^img\.taxon:[a-zA-Z0-9_][a-zA-Z0-9_\/\.]*$ igsn_identifiers: name: igsn_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers mixin: true gold_identifiers: name: gold_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers see_also: - https://gold.jgi.doe.gov/ mixin: true emsl_identifiers: name: emsl_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers mixin: true mgnify_identifiers: name: mgnify_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers see_also: - https://www.ebi.ac.uk/metagenomics/ mixin: true @@ -4792,7 +4789,7 @@ slots: the initial submission - 'the first letter of the accession indicates which partner accepted the initial submission: E for ENA, D for DDBJ, or S or N for NCBI.' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers see_also: - https://www.insdc.org/ - https://ena-docs.readthedocs.io/en/latest/submit/general-guide/accessions.html @@ -4804,30 +4801,30 @@ slots: massive_identifiers: name: massive_identifiers description: identifiers for entities according to MASSIVE - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers mixin: true neon_identifiers: name: neon_identifiers description: identifiers for entities according to NEON - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers mixin: true jgi_portal_identifiers: name: jgi_portal_identifiers description: identifiers for entities according to JGI Portal - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers mixin: true gnps_identifiers: name: gnps_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers mixin: true study_identifiers: name: study_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers is_a: external_database_identifiers abstract: true neon_study_identifiers: name: neon_study_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers is_a: study_identifiers mixins: - neon_identifiers @@ -4838,7 +4835,7 @@ slots: - value: https://identifiers.org/insdc.sra:SRP121659 description: Avena fatua rhizosphere microbial communities - H1_Rhizo_Litter_2 metatranscriptome - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers see_also: - https://github.com/bioregistry/bioregistry/issues/109 - https://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=studies @@ -4861,7 +4858,7 @@ slots: - value: https://identifiers.org/bioproject:PRJNA366857 description: Avena fatua rhizosphere microbial communities - H1_Rhizo_Litter_2 metatranscriptome - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers see_also: - https://www.ncbi.nlm.nih.gov/bioproject/ - https://www.ddbj.nig.ac.jp/bioproject/index-e.html @@ -4880,7 +4877,7 @@ slots: - uses the prefix GS (but possibly in a different case) examples: - value: https://identifiers.org/gold:Gs0110115 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers see_also: - https://gold.jgi.doe.gov/studies is_a: study_identifiers @@ -4892,7 +4889,7 @@ slots: description: identifiers for corresponding project in MGnify examples: - value: https://identifiers.org/mgnify.proj:MGYS00005757 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers is_a: study_identifiers mixins: - mgnify_identifiers @@ -4908,7 +4905,7 @@ slots: - this identifier was registered with bioregistry but not identifiers.org examples: - value: gnps.task:4b848c342a4f4abc871bdf8a09a60807 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers see_also: - https://microbiomedata.github.io/nmdc-schema/MetabolomicsAnalysisActivity/ is_a: study_identifiers @@ -4924,7 +4921,7 @@ slots: - value: MASSIVE:MSV000090886 description: MASSIVE id for MASSIVE's metabolomics analysis of Gb0305843, resolvable with prefix http://identifiers.org/massive/ - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers see_also: - https://massive.ucsd.edu/ProteoSAFe/dataset.jsp?task=83574f41458a4b259621d5c32a4d82f9 is_a: study_identifiers @@ -4935,18 +4932,18 @@ slots: name: emsl_project_dois description: A DOI that resolves to a EMSL Research Campaign page. title: EMSL Project DOI - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers is_a: study_identifiers mixins: - emsl_identifiers biosample_identifiers: name: biosample_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers is_a: external_database_identifiers abstract: true neon_biosample_identifiers: name: neon_biosample_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers is_a: biosample_identifiers mixins: - neon_identifiers @@ -4955,7 +4952,7 @@ slots: description: identifiers for corresponding sample in GOLD examples: - value: https://identifiers.org/gold:Gb0312930 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers is_a: biosample_identifiers mixins: - gold_identifiers @@ -4968,7 +4965,7 @@ slots: - value: https://identifiers.org/biosample:SAMD00212331 description: I13_N_5-10 sample from Soil fungal diversity along elevational gradients - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers see_also: - https://github.com/bioregistry/bioregistry/issues/108 - https://www.ebi.ac.uk/biosamples/ @@ -4993,7 +4990,7 @@ slots: - value: https://identifiers.org/insdc.sra:DRS166340 description: I13_N_5-10 sample from Soil fungal diversity along elevational gradients - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers is_a: biosample_identifiers mixins: - insdc_identifiers @@ -5008,7 +5005,7 @@ slots: - removed "planned" once NEXUS is online - make an emsl identifiers mixin - determine real expansion for emsl prefix - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers is_a: biosample_identifiers mixins: - emsl_identifiers @@ -5016,13 +5013,13 @@ slots: name: igsn_biosample_identifiers description: A list of identifiers for the biosample from the IGSN database. title: IGSN Biosample Identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers is_a: biosample_identifiers mixins: - igsn_identifiers omics_processing_identifiers: name: omics_processing_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers is_a: external_database_identifiers abstract: true gold_sequencing_project_identifiers: @@ -5030,21 +5027,21 @@ slots: description: identifiers for corresponding sequencing project in GOLD examples: - value: https://identifiers.org/gold:Gp0108335 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers is_a: omics_processing_identifiers mixins: - gold_identifiers pattern: ^GOLD:Gp[0-9]+$ insdc_experiment_identifiers: name: insdc_experiment_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers is_a: external_database_identifiers mixins: - insdc_identifiers pattern: ^insdc.sra:(E|D|S)RX[0-9]{6,}$ analysis_identifiers: name: analysis_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers is_a: external_database_identifiers abstract: true gold_analysis_project_identifiers: @@ -5052,7 +5049,7 @@ slots: description: identifiers for corresponding analysis project in GOLD examples: - value: https://identifiers.org/gold:Ga0526289 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers is_a: analysis_identifiers mixins: - gold_identifiers @@ -5065,7 +5062,7 @@ slots: - value: https://www.ebi.ac.uk/metagenomics/runs/DRR218479 description: Illumina MiSeq paired end sequencing of SAMD00212331 - value: https://www.ebi.ac.uk/ena/browser/view/ERR436051 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers is_a: analysis_identifiers mixins: - insdc_identifiers @@ -5077,17 +5074,17 @@ slots: examples: - value: https://www.ebi.ac.uk/metagenomics/analyses/MGYA00002270 description: combined analyses (taxonomic, functional) of sample ERS438107 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers is_a: analysis_identifiers mixins: - mgnify_identifiers assembly_identifiers: name: assembly_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers abstract: true insdc_assembly_identifiers: name: insdc_assembly_identifiers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers + from_schema: https://w3id.org/nmdc/external_identifiers is_a: assembly_identifiers mixins: - insdc_identifiers @@ -5095,34 +5092,34 @@ slots: dissolving_activity_set: name: dissolving_activity_set title: dissolving activity set - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep multivalued: true range: DissolvingActivity inlined_as_list: true material_sample_set: name: material_sample_set title: material sample set - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep multivalued: true range: MaterialSample inlined_as_list: true material_sampling_activity_set: name: material_sampling_activity_set title: material sampling activity set - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep multivalued: true range: MaterialSamplingActivity inlined_as_list: true reaction_activity_set: name: reaction_activity_set - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep multivalued: true range: ReactionActivity inlined_as_list: true dissolution_aided_by: name: dissolution_aided_by title: dissolution aided by - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep aliases: - shaker range: LabDevice @@ -5130,14 +5127,14 @@ slots: dissolution_reagent: name: dissolution_reagent title: dissolution reagent - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep aliases: - solvent range: SolventEnum dissolution_volume: name: dissolution_volume title: dissolution volume - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep aliases: - volume range: QuantityValue @@ -5145,7 +5142,7 @@ slots: dissolved_in: name: dissolved_in title: dissolved in - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep aliases: - container range: MaterialContainer @@ -5153,24 +5150,24 @@ slots: material_input: name: material_input title: material input - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep range: MaterialSample material_output: name: material_output title: material output - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep range: MaterialSample device_type: name: device_type title: device type - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep aliases: - shaker type range: DeviceTypeEnum activity_speed: name: activity_speed title: activity speed - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep aliases: - shake_speed range: QuantityValue @@ -5179,13 +5176,13 @@ slots: name: activity_temperature todos: - constrain units - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep range: QuantityValue inlined: true activity_time: name: activity_time title: activity time - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep aliases: - shake_time range: QuantityValue @@ -5193,50 +5190,50 @@ slots: container_size: name: container_size title: container size - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep range: QuantityValue inlined: true container_type: name: container_type title: container type - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep range: ContainerTypeEnum amount_collected: name: amount_collected title: amount collected - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep range: QuantityValue inlined: true collected_into: name: collected_into title: collected into - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep sampling_method: name: sampling_method title: sampling method - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep range: SamplingMethodEnum reaction_aided_by: name: reaction_aided_by title: reaction aided by - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep aliases: - shaker range: LabDevice inlined: true reaction_temperature: name: reaction_temperature - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep reaction_time: name: reaction_time - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep analysis_type: name: analysis_type description: Select all the data types associated or available for this biosample title: analysis/data type examples: - value: metagenomics; metabolomics; proteomics - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/sample_id + from_schema: https://w3id.org/nmdc/portal/sample_id see_also: - MIxS:investigation_type rank: 3 @@ -5257,7 +5254,7 @@ slots: to a new vial and generated a new sample)' examples: - value: IGSN:DSJ0284 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/sample_id + from_schema: https://w3id.org/nmdc/portal/sample_id rank: 5 string_serialization: '{text}:{text}' multivalued: true @@ -5277,7 +5274,7 @@ slots: are all acceptable. examples: - value: 2021-04-15, 2021-04 and 2021 are all acceptable. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/mixs_inspired + from_schema: https://w3id.org/nmdc/portal/mixs_inspired see_also: - MIxS:collection_date rank: 2 @@ -5295,7 +5292,7 @@ slots: - 'Time should be entered as HH:MM(:SS) in GMT. See here for a converter: https://www.worldtimebuddy.com/pst-to-gmt-converter' examples: - value: 13:33 or 13:33:55 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/mixs_inspired + from_schema: https://w3id.org/nmdc/portal/mixs_inspired see_also: - MIxS:collection_date rank: 1 @@ -5314,7 +5311,7 @@ slots: - 'Time should be entered as HH:MM(:SS) in GMT. See here for a converter: https://www.worldtimebuddy.com/pst-to-gmt-converter' examples: - value: 13:33 or 13:33:55 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/mixs_inspired + from_schema: https://w3id.org/nmdc/portal/mixs_inspired see_also: - MIxS:collection_date rank: 3 @@ -5333,7 +5330,7 @@ slots: data collection template. examples: - value: 'experimental treatment: value' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/mixs_inspired + from_schema: https://w3id.org/nmdc/portal/mixs_inspired see_also: - MIxS:experimental_factor|additional_info rank: 7 @@ -5349,7 +5346,7 @@ slots: examples: - value: C18 - value: Basix PES, 13-100-106 FisherSci - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/mixs_inspired + from_schema: https://w3id.org/nmdc/portal/mixs_inspired see_also: - MIxS:filter_type rank: 6 @@ -5368,7 +5365,7 @@ slots: examples: - value: 13C glucose - value: H218O - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/mixs_inspired + from_schema: https://w3id.org/nmdc/portal/mixs_inspired see_also: - MIxS:chem_administration rank: 16 @@ -5386,7 +5383,7 @@ slots: examples: - value: https://doi.org/10.1016/0038-0717(87)90052-6 - value: https://doi.org/10.1016/0038-0717(87)90052-6 | https://www.sciencedirect.com/science/article/abs/pii/0038071787900526 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/mixs_inspired + from_schema: https://w3id.org/nmdc/portal/mixs_inspired see_also: - MIxS:micro_biomass_meth rank: 11 @@ -5402,7 +5399,7 @@ slots: examples: - value: https://doi.org/10.1016/0038-0717(87)90052-6 - value: https://doi.org/10.1016/0038-0717(87)90052-6 | https://www.sciencedirect.com/science/article/abs/pii/0038071787900526 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/mixs_inspired + from_schema: https://w3id.org/nmdc/portal/mixs_inspired see_also: - MIxS:micro_biomass_meth rank: 13 @@ -5418,7 +5415,7 @@ slots: and method are required examples: - value: 0.05 ug C/g dry soil - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/mixs_inspired + from_schema: https://w3id.org/nmdc/portal/mixs_inspired see_also: - MIxS:microbial_biomass rank: 10 @@ -5434,7 +5431,7 @@ slots: and method are required examples: - value: 0.05 ug N/g dry soil - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/mixs_inspired + from_schema: https://w3id.org/nmdc/portal/mixs_inspired see_also: - MIxS:microbial_biomass rank: 12 @@ -5448,7 +5445,7 @@ slots: title: non-microbial biomass examples: - value: insect 0.23 ug; plant 1g - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/mixs_inspired + from_schema: https://w3id.org/nmdc/portal/mixs_inspired see_also: - MIxS:biomass|microbial_biomass rank: 8 @@ -5462,7 +5459,7 @@ slots: - required if "non-microbial biomass" is provided examples: - value: https://doi.org/10.1038/s41467-021-26181-3 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/mixs_inspired + from_schema: https://w3id.org/nmdc/portal/mixs_inspired see_also: - MIxS:microbial_biomass rank: 9 @@ -5476,7 +5473,7 @@ slots: - required if "org_nitro" is provided examples: - value: https://doi.org/10.1016/0038-0717(85)90144-0 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/mixs_inspired + from_schema: https://w3id.org/nmdc/portal/mixs_inspired see_also: - MIxS:org_nitro|tot_nitro_cont_meth rank: 14 @@ -5490,7 +5487,7 @@ slots: comments: - This is an open text field to provide any treatments that cannot be captured in the provided slots. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/mixs_inspired + from_schema: https://w3id.org/nmdc/portal/mixs_inspired see_also: - MIxS:additional_info rank: 15 @@ -5509,7 +5506,7 @@ slots: are all acceptable. examples: - value: 2021-04-15, 2021-04 and 2021 are all acceptable. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/mixs_inspired + from_schema: https://w3id.org/nmdc/portal/mixs_inspired see_also: - MIxS:collection_date rank: 4 @@ -5527,7 +5524,7 @@ slots: - 'Time should be entered as HH:MM(:SS) in GMT. See here for a converter: https://www.worldtimebuddy.com/pst-to-gmt-converter' examples: - value: 13:33 or 13:33:55 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/mixs_inspired + from_schema: https://w3id.org/nmdc/portal/mixs_inspired see_also: - MIxS:collection_date rank: 5 @@ -5541,7 +5538,7 @@ slots: - Note DNase treatment is required for all RNA samples. examples: - value: 'no' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metatranscriptomics + from_schema: https://w3id.org/nmdc/portal/jgi_metatranscriptomics rank: 13 slot_group: JGI-Metatranscriptomics range: YesNoEnum @@ -5554,7 +5551,7 @@ slots: values have been pre-filled. examples: - value: '504000' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metatranscriptomics + from_schema: https://w3id.org/nmdc/portal/jgi_metatranscriptomics rank: 19 string_serialization: '{text}' slot_group: JGI-Metatranscriptomics @@ -5567,7 +5564,7 @@ slots: - Recommended value is between 1 and 3. examples: - value: '2.02' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metatranscriptomics + from_schema: https://w3id.org/nmdc/portal/jgi_metatranscriptomics rank: 7 is_a: biomaterial_purity string_serialization: '{float}' @@ -5582,7 +5579,7 @@ slots: - Recommended value is between 1 and 3. examples: - value: '2.02' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metatranscriptomics + from_schema: https://w3id.org/nmdc/portal/jgi_metatranscriptomics rank: 8 is_a: biomaterial_purity string_serialization: '{float}' @@ -5595,7 +5592,7 @@ slots: title: RNA collection site examples: - value: untreated pond water - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metatranscriptomics + from_schema: https://w3id.org/nmdc/portal/jgi_metatranscriptomics rank: 15 string_serialization: '{text}' slot_group: JGI-Metatranscriptomics @@ -5608,7 +5605,7 @@ slots: a fluorometric method. Acceptable values are 0-2000. examples: - value: '100' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metatranscriptomics + from_schema: https://w3id.org/nmdc/portal/jgi_metatranscriptomics see_also: - nmdc:nucleic_acid_concentration rank: 5 @@ -5624,7 +5621,7 @@ slots: title: RNA container type examples: - value: plate - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metatranscriptomics + from_schema: https://w3id.org/nmdc/portal/jgi_metatranscriptomics rank: 10 slot_group: JGI-Metatranscriptomics range: JgiContTypeEnum @@ -5640,7 +5637,7 @@ slots: - For partial plates, fill by columns, like B1-G1,A2-H2,A3-D3 (NOT A2-A11,B1-B8). examples: - value: B2 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metatranscriptomics + from_schema: https://w3id.org/nmdc/portal/jgi_metatranscriptomics rank: 11 string_serialization: '{96 well plate pos}' slot_group: JGI-Metatranscriptomics @@ -5654,7 +5651,7 @@ slots: in a plate should have the same plate label. examples: - value: Pond_MT_041618 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metatranscriptomics + from_schema: https://w3id.org/nmdc/portal/jgi_metatranscriptomics rank: 9 string_serialization: '{text < 20 characters}' slot_group: JGI-Metatranscriptomics @@ -5665,7 +5662,7 @@ slots: title: RNA isolation method examples: - value: phenol/chloroform extraction - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metatranscriptomics + from_schema: https://w3id.org/nmdc/portal/jgi_metatranscriptomics rank: 16 string_serialization: '{text}' slot_group: JGI-Metatranscriptomics @@ -5678,7 +5675,7 @@ slots: examples: - value: expected to contain microbes (59%) fungi (30%), viruses (10%), tadpoles (1%) - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metatranscriptomics + from_schema: https://w3id.org/nmdc/portal/jgi_metatranscriptomics rank: 14 string_serialization: '{text}' slot_group: JGI-Metatranscriptomics @@ -5691,7 +5688,7 @@ slots: values have been pre-filled. examples: - value: John Jones - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metatranscriptomics + from_schema: https://w3id.org/nmdc/portal/jgi_metatranscriptomics rank: 18 string_serialization: '{text}' slot_group: JGI-Metatranscriptomics @@ -5704,7 +5701,7 @@ slots: values have been pre-filled. examples: - value: '187654' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metatranscriptomics + from_schema: https://w3id.org/nmdc/portal/jgi_metatranscriptomics rank: 3 string_serialization: '{text}' slot_group: JGI-Metatranscriptomics @@ -5715,7 +5712,7 @@ slots: title: RNA sample format examples: - value: Water - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metatranscriptomics + from_schema: https://w3id.org/nmdc/portal/jgi_metatranscriptomics rank: 12 slot_group: JGI-Metatranscriptomics range: rna_sample_format_enum @@ -5727,7 +5724,7 @@ slots: title: RNA sample name examples: - value: JGI_pond_041618 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metatranscriptomics + from_schema: https://w3id.org/nmdc/portal/jgi_metatranscriptomics rank: 4 string_serialization: '{text}' slot_group: JGI-Metatranscriptomics @@ -5742,7 +5739,7 @@ slots: values have been pre-filled. examples: - value: '1191234' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metatranscriptomics + from_schema: https://w3id.org/nmdc/portal/jgi_metatranscriptomics rank: 1 string_serialization: '{text}' slot_group: JGI-Metatranscriptomics @@ -5755,7 +5752,7 @@ slots: values have been pre-filled. examples: - value: Jane Johnson - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metatranscriptomics + from_schema: https://w3id.org/nmdc/portal/jgi_metatranscriptomics rank: 17 string_serialization: '{text}' slot_group: JGI-Metatranscriptomics @@ -5768,7 +5765,7 @@ slots: values have been pre-filled. examples: - value: JGI Pond metatranscriptomics - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metatranscriptomics + from_schema: https://w3id.org/nmdc/portal/jgi_metatranscriptomics rank: 2 string_serialization: '{text}' slot_group: JGI-Metatranscriptomics @@ -5782,7 +5779,7 @@ slots: has been granted by a project manager examples: - value: '25' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metatranscriptomics + from_schema: https://w3id.org/nmdc/portal/jgi_metatranscriptomics rank: 6 string_serialization: '{float}' slot_group: JGI-Metatranscriptomics @@ -5798,7 +5795,7 @@ slots: - Recommended value is between 1 and 3. examples: - value: '2.02' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metagenomics + from_schema: https://w3id.org/nmdc/portal/jgi_metagenomics rank: 7 is_a: biomaterial_purity string_serialization: '{float}' @@ -5813,7 +5810,7 @@ slots: - Recommended value is between 1 and 3. examples: - value: '2.02' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metagenomics + from_schema: https://w3id.org/nmdc/portal/jgi_metagenomics rank: 8 is_a: biomaterial_purity string_serialization: '{float}' @@ -5826,7 +5823,7 @@ slots: title: DNA collection site examples: - value: untreated pond water - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metagenomics + from_schema: https://w3id.org/nmdc/portal/jgi_metagenomics rank: 15 string_serialization: '{text}' slot_group: JGI-Metagenomics @@ -5839,7 +5836,7 @@ slots: a fluorometric method. Acceptable values are 0-2000. examples: - value: '100' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metagenomics + from_schema: https://w3id.org/nmdc/portal/jgi_metagenomics see_also: - nmdc:nucleic_acid_concentration rank: 5 @@ -5855,7 +5852,7 @@ slots: title: DNA container type examples: - value: plate - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metagenomics + from_schema: https://w3id.org/nmdc/portal/jgi_metagenomics rank: 10 slot_group: JGI-Metagenomics range: JgiContTypeEnum @@ -5871,7 +5868,7 @@ slots: - For partial plates, fill by columns, like B1-G1,A2-H2,A3-D3 (NOT A2-A11,B1-B8). examples: - value: B2 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metagenomics + from_schema: https://w3id.org/nmdc/portal/jgi_metagenomics rank: 11 string_serialization: '{96 well plate pos}' slot_group: JGI-Metagenomics @@ -5885,7 +5882,7 @@ slots: in a plate should have the same plate label. examples: - value: Pond_MT_041618 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metagenomics + from_schema: https://w3id.org/nmdc/portal/jgi_metagenomics rank: 9 string_serialization: '{text < 20 characters}' slot_group: JGI-Metagenomics @@ -5897,7 +5894,7 @@ slots: - Note DNase treatment is required for all RNA samples. examples: - value: 'no' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metagenomics + from_schema: https://w3id.org/nmdc/portal/jgi_metagenomics rank: 13 slot_group: JGI-Metagenomics range: YesNoEnum @@ -5908,7 +5905,7 @@ slots: title: DNA isolation method examples: - value: phenol/chloroform extraction - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metagenomics + from_schema: https://w3id.org/nmdc/portal/jgi_metagenomics rank: 16 string_serialization: '{text}' slot_group: JGI-Metagenomics @@ -5921,7 +5918,7 @@ slots: examples: - value: expected to contain microbes (59%) fungi (30%), viruses (10%), tadpoles (1%) - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metagenomics + from_schema: https://w3id.org/nmdc/portal/jgi_metagenomics rank: 14 string_serialization: '{text}' slot_group: JGI-Metagenomics @@ -5934,7 +5931,7 @@ slots: values have been pre-filled. examples: - value: John Jones - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metagenomics + from_schema: https://w3id.org/nmdc/portal/jgi_metagenomics rank: 18 string_serialization: '{text}' slot_group: JGI-Metagenomics @@ -5951,7 +5948,7 @@ slots: values have been pre-filled. examples: - value: '187654' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metagenomics + from_schema: https://w3id.org/nmdc/portal/jgi_metagenomics rank: 3 string_serialization: '{text}' slot_group: JGI-Metagenomics @@ -5962,7 +5959,7 @@ slots: title: DNA sample format examples: - value: Water - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metagenomics + from_schema: https://w3id.org/nmdc/portal/jgi_metagenomics rank: 12 slot_group: JGI-Metagenomics range: dna_sample_format_enum @@ -5974,7 +5971,7 @@ slots: title: DNA sample name examples: - value: JGI_pond_041618 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metagenomics + from_schema: https://w3id.org/nmdc/portal/jgi_metagenomics rank: 4 string_serialization: '{text}' slot_group: JGI-Metagenomics @@ -5987,7 +5984,7 @@ slots: values have been pre-filled. examples: - value: '1191234' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metagenomics + from_schema: https://w3id.org/nmdc/portal/jgi_metagenomics rank: 1 string_serialization: '{text}' slot_group: JGI-Metagenomics @@ -6000,7 +5997,7 @@ slots: values have been pre-filled. examples: - value: Jane Johnson - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metagenomics + from_schema: https://w3id.org/nmdc/portal/jgi_metagenomics rank: 17 string_serialization: '{text}' slot_group: JGI-Metagenomics @@ -6013,7 +6010,7 @@ slots: values have been pre-filled. examples: - value: JGI Pond metagenomics - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metagenomics + from_schema: https://w3id.org/nmdc/portal/jgi_metagenomics rank: 2 string_serialization: '{text}' slot_group: JGI-Metagenomics @@ -6027,7 +6024,7 @@ slots: has been granted by a project manager examples: - value: '25' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metagenomics + from_schema: https://w3id.org/nmdc/portal/jgi_metagenomics rank: 6 string_serialization: '{float}' slot_group: JGI-Metagenomics @@ -6043,7 +6040,7 @@ slots: values have been pre-filled. examples: - value: '504000' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metagenomics + from_schema: https://w3id.org/nmdc/portal/jgi_metagenomics rank: 19 string_serialization: '{text}' slot_group: JGI-Metagenomics @@ -6059,7 +6056,7 @@ slots: - Enter a temperature in celsius. Numeric portion only. examples: - value: '-80' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/emsl + from_schema: https://w3id.org/nmdc/portal/emsl rank: 4 string_serialization: '{float}' slot_group: EMSL @@ -6068,7 +6065,7 @@ slots: name: project_id description: Proposal IDs or names associated with dataset title: project ID - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/emsl + from_schema: https://w3id.org/nmdc/portal/emsl rank: 1 string_serialization: '{text}' slot_group: EMSL @@ -6079,7 +6076,7 @@ slots: title: replicate number comments: - This will guide staff in ensuring your samples are blocked & randomized correctly - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/emsl + from_schema: https://w3id.org/nmdc/portal/emsl rank: 6 string_serialization: '{integer}' slot_group: EMSL @@ -6096,7 +6093,7 @@ slots: - value: 15 g - value: 100 uL - value: 5 mL - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/emsl + from_schema: https://w3id.org/nmdc/portal/emsl rank: 3 string_serialization: '{float} {unit}' slot_group: EMSL @@ -6109,7 +6106,7 @@ slots: - This can vary from 'environmental package' if the sample is an extraction. examples: - value: water extracted soil - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/emsl + from_schema: https://w3id.org/nmdc/portal/emsl rank: 2 slot_group: EMSL range: sample_type_enum @@ -6124,7 +6121,7 @@ slots: to EMSL for analyses. examples: - value: '2' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/emsl + from_schema: https://w3id.org/nmdc/portal/emsl rank: 5 string_serialization: '{integer}' slot_group: EMSL @@ -17112,29 +17109,34 @@ slots: name: sequencing field from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml abstract: true - has numeric value: - name: has numeric value + environment field: + name: environment field + description: field describing environmental aspect of a sample from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - owner: QuantityValue - range: double + abstract: true investigation field: name: investigation field description: field describing aspect of the investigation/study to which the sample belongs from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml abstract: true - core field: - name: core field - description: basic fields + has numeric value: + name: has numeric value from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - abstract: true + owner: QuantityValue + range: double + has raw value: + name: has raw value + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml + string_serialization: '{has numeric value} {has unit}' + owner: QuantityValue nucleic acid sequence source field: name: nucleic acid sequence source field from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml abstract: true - environment field: - name: environment field - description: field describing environmental aspect of a sample + core field: + name: core field + description: basic fields from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml abstract: true has unit: @@ -17142,22 +17144,17 @@ slots: description: Example "m" from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml owner: QuantityValue - has raw value: - name: has raw value - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml - string_serialization: '{has numeric value} {has unit}' - owner: QuantityValue chemical: name: chemical description: from reaction participant class - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation stoichiometry: name: stoichiometry description: from reaction participant class - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation subject: name: subject - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation range: GeneProduct has_function: name: has_function @@ -17165,11 +17162,11 @@ slots: - the range for has_function was asserted as functional_annotation_term/FunctionalAnnotationTerm, - but is actually taking string arguments in MongoDB, - and those are frequently fulltext, not CURIEs. MAM 2021-06-23 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation range: string has_participants: name: has_participants - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation exact_mappings: - RO:0000057 abstract: true @@ -17181,64 +17178,64 @@ slots: genomes, plasmids, and some viral genomes), the requirement for start to be less than or equal to end is satisfied by making end = the position of the end + the length of the landmark feature. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation range: integer minimum_value: 1 seqid: name: seqid todos: - change range from string to object - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation strand: name: strand todos: - set the range to an enum? - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation direction: name: direction - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation encodes: name: encodes - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation end: name: end - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation feature_type: name: feature_type - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation has_part: name: has_part - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation is_balanced: name: is_balanced - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation is_diastereoselective: name: is_diastereoselective - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation is_fully_characterized: name: is_fully_characterized - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation is_stereo: name: is_stereo - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation is_transport: name: is_transport - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation left_participants: name: left_participants - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation phase: name: phase - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation right_participants: name: right_participants - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation smarts_string: name: smarts_string - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation start: name: start - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation classes: Database: name: Database @@ -17246,7 +17243,7 @@ classes: need to correspond to an actual managed database top level holder class. When translated to JSON-Schema this is the 'root' object. It should contain pointers to other objects of interest - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - NMDC metadata object slots: @@ -17294,7 +17291,7 @@ classes: tree_root: true Pooling: name: Pooling - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: PlannedProcess slot_usage: has_input: @@ -17312,7 +17309,7 @@ classes: interpolated: true Extraction: name: Extraction - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: PlannedProcess slots: - extraction_method @@ -17336,13 +17333,13 @@ classes: interpolated: true Protocol: name: Protocol - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc slots: - url - name QualityControlReport: name: QualityControlReport - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc slots: - status - name @@ -17350,7 +17347,7 @@ classes: name: LibraryPreparation comments: - OBI:0000711 specifies a DNA input (but not ONLY a DNA input) - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - LibraryConstruction close_mappings: @@ -17386,7 +17383,7 @@ classes: the same plant were obtained at the same site. In this case, the site would correspond to one tree. - might correspond to GOLD's identifier on a page like https://gold.jgi.doe.gov/biosample?id=Gb0305833 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - research plot is_a: Site @@ -17414,7 +17411,7 @@ classes: title: Collecting Biosamples From Site comments: - this illustrates implementing a Biosample relation with a process class - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: PlannedProcess slot_usage: has_input: @@ -17442,7 +17439,7 @@ classes: - removed id_prefixes value of GOLD, since we are now using pattern-based id validation in_subset: - data object subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc is_a: NamedThing slots: - file_size_bytes @@ -17481,7 +17478,7 @@ classes: id validation in_subset: - sample subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - sample - material sample @@ -18568,7 +18565,7 @@ classes: but no longer for the Study.id in_subset: - sample subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - proposal - research proposal @@ -18692,7 +18689,7 @@ classes: description: A process that takes one or more biosamples as inputs and generates one or as outputs. Examples of outputs include samples cultivated from another sample or data objects created by instruments runs. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - material processing broad_mappings: @@ -18723,7 +18720,7 @@ classes: - The ID prefix for objects coming from GOLD will be gold:Gp in_subset: - sample subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - omics assay - sequencing project @@ -18772,7 +18769,7 @@ classes: will be at least a slot for a CRediT Contributor Role (https://casrai.org/credit/) and for a person value Specifically see the associated researchers tab on the NMDC_SampleMetadata-V4_CommentsForUpdates at https://docs.google.com/spreadsheets/d/1INlBo5eoqn2efn4H2P2i8rwRBtnbDVTqXrochJEAPko/edit#gid=0 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + from_schema: https://w3id.org/nmdc/nmdc aliases: - study role - credit table @@ -18801,7 +18798,7 @@ classes: and stop times, potentially with different inputs and outputs in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity aliases: - analysis is_a: Activity @@ -18855,7 +18852,7 @@ classes: relevant to NMDC in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: WorkflowExecutionActivity slots: - type @@ -18898,7 +18895,7 @@ classes: name: MetatranscriptomeAssembly in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: WorkflowExecutionActivity slots: - asm_score @@ -18942,7 +18939,7 @@ classes: annotation of assembled metagenome contigs in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: WorkflowExecutionActivity slots: - type @@ -18958,7 +18955,7 @@ classes: name: MetatranscriptomeAnnotationActivity in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: WorkflowExecutionActivity slots: - type @@ -18976,7 +18973,7 @@ classes: activity. in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: WorkflowExecutionActivity slots: - type @@ -18994,7 +18991,7 @@ classes: title: Metagenome-Assembled Genome analysis activity in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: WorkflowExecutionActivity slots: - type @@ -19018,7 +19015,7 @@ classes: title: Metagenome sequencing activity in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: WorkflowExecutionActivity slot_usage: id: @@ -19036,7 +19033,7 @@ classes: title: Read quality control analysis activity in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: WorkflowExecutionActivity slots: - type @@ -19061,7 +19058,7 @@ classes: title: Read based analysis activity in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: WorkflowExecutionActivity slots: - type @@ -19076,7 +19073,7 @@ classes: name: MetabolomicsAnalysisActivity in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: WorkflowExecutionActivity slots: - has_calibration @@ -19096,7 +19093,7 @@ classes: name: MetaproteomicsAnalysisActivity in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: WorkflowExecutionActivity slots: - has_peptide_quantifications @@ -19115,7 +19112,7 @@ classes: name: NomAnalysisActivity in_subset: - workflow subset - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity + from_schema: https://w3id.org/nmdc/workflow_execution_activity is_a: WorkflowExecutionActivity slots: - has_calibration @@ -19133,7 +19130,7 @@ classes: NamedThing: name: NamedThing description: a databased entity or concept/class - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core abstract: true slots: - id @@ -19143,7 +19140,7 @@ classes: MaterialEntity: name: MaterialEntity title: Material Entity - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core aliases: - Material - Physical entity @@ -19152,7 +19149,7 @@ classes: ProcessedSample: name: ProcessedSample title: Processed Sample - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core is_a: MaterialEntity slots: - biomaterial_purity @@ -19170,7 +19167,7 @@ classes: AnalyticalSample: name: AnalyticalSample title: Analytical Sample - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core is_a: MaterialEntity slot_usage: id: @@ -19184,7 +19181,7 @@ classes: title: Site comments: - BCO sample collection site ? - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core is_a: MaterialEntity abstract: true slot_usage: @@ -19197,7 +19194,7 @@ classes: PlannedProcess: name: PlannedProcess title: Planned Process - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core is_a: NamedThing abstract: true slots: @@ -19212,17 +19209,17 @@ classes: notes: - The identifiers for terms from external ontologies can't have their ids constrained to the nmdc namespace - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core is_a: NamedThing EnvironmentalMaterialTerm: name: EnvironmentalMaterialTerm - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core is_a: OntologyClass AttributeValue: name: AttributeValue description: The value for any value of a attribute for a sample. This object can hold both the un-normalized atomic value and the structured value - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core slots: - has_raw_value - was_generated_by @@ -19232,7 +19229,7 @@ classes: description: An optional string that specified the type of object. InstrumentValue: name: InstrumentValue - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core is_a: AttributeValue slots: - has_unit @@ -19241,7 +19238,7 @@ classes: QuantityValue: name: QuantityValue description: A simple quantity, e.g. 2cm - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core mappings: - schema:QuantityValue is_a: AttributeValue @@ -19265,7 +19262,7 @@ classes: ImageValue: name: ImageValue description: An attribute value representing an image. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core is_a: AttributeValue slots: - url @@ -19277,7 +19274,7 @@ classes: todos: - add additional fields e.g for institution - deprecate "has_raw_value" in favor of "name" - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core is_a: AttributeValue slots: - orcid @@ -19314,7 +19311,7 @@ classes: is optional. MagBin: name: MagBin - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core slots: - bin_name - bin_quality @@ -19340,7 +19337,7 @@ classes: name: Instrument description: A material entity that is designed to perform a function in a scientific investigation, but is not a reagent[OBI]. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core aliases: - device exact_mappings: @@ -19357,7 +19354,7 @@ classes: name: MetaboliteQuantification description: This is used to link a metabolomics analysis workflow to a specific metabolite - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core slots: - alternative_identifiers - highest_similarity_score @@ -19366,7 +19363,7 @@ classes: name: PeptideQuantification description: This is used to link a metaproteomics analysis workflow to a specific peptide sequence and related information - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core slots: - all_proteins - best_protein @@ -19378,7 +19375,7 @@ classes: name: ProteinQuantification description: This is used to link a metaproteomics analysis workflow to a specific protein - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core slot_usage: best_protein: name: best_protein @@ -19423,7 +19420,7 @@ classes: comments: - As with the parent OntologyClass, we will not assign an nmdc id pattern or typecode to this class. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core see_also: - https://bioconductor.org/packages/devel/data/annotation/vignettes/metaboliteIDmapping/inst/doc/metaboliteIDmapping.html aliases: @@ -19463,40 +19460,40 @@ classes: notes: - we may include a more general gene product class in future to allow for ncRNA annotation - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core exact_mappings: - biolink:GeneProduct is_a: NamedThing TextValue: name: TextValue description: A basic string value - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core is_a: AttributeValue slots: - language UrlValue: name: UrlValue description: A value that is a string that conforms to URL syntax - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core is_a: AttributeValue TimestampValue: name: TimestampValue description: A value that is a timestamp. The range should be ISO-8601 notes: - 'removed the following slots: year, month, day' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core is_a: AttributeValue IntegerValue: name: IntegerValue description: A value that is an integer - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core is_a: AttributeValue slots: - has_numeric_value BooleanValue: name: BooleanValue description: A value that is a boolean - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core is_a: AttributeValue slots: - has_boolean_value @@ -19505,7 +19502,7 @@ classes: description: A controlled term or class from an ontology todos: - add fields for ontology, branch - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core is_a: AttributeValue slots: - term @@ -19515,7 +19512,7 @@ classes: of term with an id notes: - To be used for slots like env_broad_scale - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core is_a: ControlledTermValue slot_usage: term: @@ -19526,7 +19523,7 @@ classes: description: A normalized value for a location on the earth's surface notes: - 'what did ''to_str: {latitude} {longitude}'' mean?' - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core + from_schema: https://w3id.org/nmdc/core mappings: - schema:GeoCoordinates is_a: AttributeValue @@ -19546,7 +19543,7 @@ classes: Activity: name: Activity description: a provence-generating activity - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/prov + from_schema: https://w3id.org/nmdc/prov mappings: - prov:Activity slots: @@ -19569,7 +19566,7 @@ classes: DissolvingActivity: name: DissolvingActivity title: Dissolving activity - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep aliases: - dissolution-activity slots: @@ -19594,7 +19591,7 @@ classes: LabDevice: name: LabDevice title: Lab device - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep slots: - device_type - activity_speed @@ -19603,14 +19600,14 @@ classes: MaterialContainer: name: MaterialContainer title: Material container - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep slots: - container_size - container_type MaterialSample: name: MaterialSample title: Material sample - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep aliases: - Material entity is_a: NamedThing @@ -19624,7 +19621,7 @@ classes: MaterialSamplingActivity: name: MaterialSamplingActivity title: Material sampling activity - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep aliases: - weighing-activity slots: @@ -19656,7 +19653,7 @@ classes: ReactionActivity: name: ReactionActivity title: Reaction activity - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep + from_schema: https://w3id.org/nmdc/sample_prep aliases: - reaction-activity slots: @@ -19684,7 +19681,7 @@ classes: description: A feature localized to an interval along a genome comments: - corresponds to an entry in GFF3 - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation see_also: - https://github.com/The-Sequence-Ontology/Specifications/blob/master/gff3.md slot_usage: @@ -19746,7 +19743,7 @@ classes: to a functional unit of a genome (protein, ncRNA, complex). todos: - decide if this should be used for product naming - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation aliases: - function - FunctionalAnnotation @@ -19759,7 +19756,7 @@ classes: - COG description: A pathway is a sequence of steps/reactions carried out by an organism or community of organisms - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation aliases: - biological process - metabolic pathway @@ -19787,7 +19784,7 @@ classes: description: An individual biochemical transformation carried out by a functional unit of an organism, in which a collection of substrates are transformed into a collection of products. Can also represent transporters - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation exact_mappings: - biolink:MolecularActivity is_a: FunctionalAnnotationTerm @@ -19827,7 +19824,7 @@ classes: ReactionParticipant: name: ReactionParticipant description: Instances of this link a reaction to a chemical entity participant - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation slot_usage: chemical: name: chemical @@ -19848,7 +19845,7 @@ classes: description: A set of genes or gene products in which all members are orthologous notes: - KEGG.ORTHOLOGY prefix is used for KO numbers - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation exact_mappings: - biolink:GeneFamily is_a: FunctionalAnnotationTerm @@ -19861,7 +19858,7 @@ classes: typically using HMM or Blast type methods notes: - move id slot usage patterns to has_function slot usage? - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation + from_schema: https://w3id.org/nmdc/annotation see_also: - https://img.jgi.doe.gov/docs/functional-annotation.pdf - https://github.com/microbiomedata/mg_annotation/blob/master/functional-annotation.wdl diff --git a/project/owl/nmdc.owl.ttl b/project/owl/nmdc.owl.ttl index b3d67f4fa3..4903ee910e 100644 --- a/project/owl/nmdc.owl.ttl +++ b/project/owl/nmdc.owl.ttl @@ -1,10 +1,9 @@ -@prefix EFO: . +@prefix EFO: . @prefix IAO: . @prefix ISA: . @prefix dcterms: . @prefix linkml: . @prefix nmdc: . -@prefix nmdc_yaml: . @prefix owl: . @prefix prov: . @prefix rdf: . @@ -12,46 +11,6 @@ @prefix skos: . @prefix xsd: . -nmdc_yaml:nmdc a owl:Ontology ; - rdfs:label "NMDC" ; - IAO:0000700 nmdc:Activity, - nmdc:AttributeValue, - nmdc:CreditAssociation, - nmdc:Database, - nmdc:DissolvingActivity, - nmdc:FunctionalAnnotation, - nmdc:GenomeFeature, - nmdc:LabDevice, - nmdc:MagBin, - nmdc:MaterialContainer, - nmdc:MaterialSamplingActivity, - nmdc:MetaboliteQuantification, - nmdc:NamedThing, - nmdc:PeptideQuantification, - nmdc:ProteinQuantification, - nmdc:Protocol, - nmdc:QualityControlReport, - nmdc:ReactionActivity, - nmdc:ReactionParticipant ; - linkml:classes "{'Database': ClassDefinition(name='Database', id_prefixes=[], definition_uri='https://w3id.org/nmdc/Database', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=\"An abstract holder for any set of metadata and data. It does not need to correspond to an actual managed database top level holder class. When translated to JSON-Schema this is the 'root' object. It should contain pointers to other objects of interest\", alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=['NMDC metadata object'], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['library_preparation_set', 'processed_sample_set', 'extraction_set', 'activity_set', 'biosample_set', 'data_object_set', 'dissolving_activity_set', 'functional_annotation_set', 'genome_feature_set', 'mags_activity_set', 'material_sample_set', 'material_sampling_activity_set', 'metabolomics_analysis_activity_set', 'metagenome_annotation_activity_set', 'metagenome_assembly_set', 'metagenome_sequencing_activity_set', 'metaproteomics_analysis_activity_set', 'Database_metatranscriptome_activity_set', 'nom_analysis_activity_set', 'omics_processing_set', 'reaction_activity_set', 'read_qc_analysis_activity_set', 'read_based_taxonomy_analysis_activity_set', 'study_set', 'field_research_site_set', 'collecting_biosamples_from_site_set', 'Database_date_created', 'Database_etl_software_version', 'metatranscriptome_activity_set', 'pooling_set', 'extraction_set'], slot_usage={'date_created': SlotDefinition(name='date_created', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='TODO', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'etl_software_version': SlotDefinition(name='etl_software_version', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='TODO', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'metatranscriptome_activity_set': SlotDefinition(name='metatranscriptome_activity_set', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='TODO', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:Database', subclass_of=None, union_of=[], defining_slots=[], tree_root=True, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'Pooling': ClassDefinition(name='Pooling', id_prefixes=[], definition_uri='https://w3id.org/nmdc/Pooling', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='PlannedProcess', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['name', 'description', 'alternative_identifiers', 'protocol_link', 'start_date', 'end_date', 'Pooling_has_input', 'Pooling_has_output', 'Pooling_id'], slot_usage={'has_input': SlotDefinition(name='has_input', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=2, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'has_output': SlotDefinition(name='has_output', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=1, maximum_cardinality=1, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'id': SlotDefinition(name='id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=PatternExpression(syntax='{id_nmdc_prefix}:poolp-{id_shoulder}-{id_blade}{id_version}{id_locus}', interpolated=True, partial_match=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:Pooling', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'Extraction': ClassDefinition(name='Extraction', id_prefixes=[], definition_uri='https://w3id.org/nmdc/Extraction', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='PlannedProcess', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['name', 'description', 'alternative_identifiers', 'start_date', 'end_date', 'extraction_method', 'extraction_target', 'processing_institution', 'protocol_link', 'quality_control_report', 'sample_mass', 'Extraction_has_input', 'Extraction_has_output', 'Extraction_id'], slot_usage={'has_input': SlotDefinition(name='has_input', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'has_output': SlotDefinition(name='has_output', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'id': SlotDefinition(name='id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=PatternExpression(syntax='{id_nmdc_prefix}:extrp-{id_shoulder}-{id_blade}{id_version}{id_locus}', interpolated=True, partial_match=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:Extraction', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'Protocol': ClassDefinition(name='Protocol', id_prefixes=[], definition_uri='https://w3id.org/nmdc/Protocol', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['url', 'name'], slot_usage={}, attributes={}, class_uri='nmdc:Protocol', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'QualityControlReport': ClassDefinition(name='QualityControlReport', id_prefixes=[], definition_uri='https://w3id.org/nmdc/QualityControlReport', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['status', 'name'], slot_usage={}, attributes={}, class_uri='nmdc:QualityControlReport', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'LibraryPreparation': ClassDefinition(name='LibraryPreparation', id_prefixes=[], definition_uri='https://w3id.org/nmdc/LibraryPreparation', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=['OBI:0000711 specifies a DNA input (but not ONLY a DNA input)'], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=['LibraryConstruction'], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=['OBI:0000711'], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='PlannedProcess', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['name', 'description', 'alternative_identifiers', 'protocol_link', 'start_date', 'end_date', 'library_preparation_kit', 'library_type', 'pcr_cycles', 'processing_institution', 'LibraryPreparation_has_input', 'LibraryPreparation_has_output', 'LibraryPreparation_id'], slot_usage={'has_input': SlotDefinition(name='has_input', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'has_output': SlotDefinition(name='has_output', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'id': SlotDefinition(name='id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=PatternExpression(syntax='{id_nmdc_prefix}:libprp-{id_shoulder}-{id_blade}{id_version}{id_locus}', interpolated=True, partial_match=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:LibraryPreparation', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'FieldResearchSite': ClassDefinition(name='FieldResearchSite', id_prefixes=[], definition_uri='https://w3id.org/nmdc/FieldResearchSite', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A site, outside of a laboratory, from which biosamples may be collected.', alt_descriptions={}, title='Field Research Site', deprecated=None, todos=[], notes=[], comments=[\"Provides grouping of biosamples at level that's more specific than belonging to the same study\", 'be very clear that this could be part of a larger site', 'In Bioscales, one might say that rhizosphere soil and bulk soil from around the same plant were obtained at the same site. In this case, the site would correspond to one tree.', \"might correspond to GOLD's identifier on a page like https://gold.jgi.doe.gov/biosample?id=Gb0305833\"], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=['research plot'], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='Site', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['name', 'description', 'alternative_identifiers', 'cur_vegetation', 'elev', 'geo_loc_name', 'habitat', 'lat_lon', 'local_class', 'neon_deims_sdr_link', 'neon_eco_type', 'neon_soil_type', 'part_of', 'soil_type', 'FieldResearchSite_id'], slot_usage={'id': SlotDefinition(name='id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=PatternExpression(syntax='{id_nmdc_prefix}:frsite-{id_shoulder}-{id_blade}{id_version}{id_locus}', interpolated=True, partial_match=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:FieldResearchSite', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'CollectingBiosamplesFromSite': ClassDefinition(name='CollectingBiosamplesFromSite', id_prefixes=[], definition_uri='https://w3id.org/nmdc/CollectingBiosamplesFromSite', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title='Collecting Biosamples From Site', deprecated=None, todos=[], notes=[], comments=['this illustrates implementing a Biosample relation with a process class'], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='PlannedProcess', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['name', 'description', 'alternative_identifiers', 'protocol_link', 'start_date', 'end_date', 'CollectingBiosamplesFromSite_has_input', 'CollectingBiosamplesFromSite_has_output', 'CollectingBiosamplesFromSite_id'], slot_usage={'has_input': SlotDefinition(name='has_input', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='Site', range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'has_output': SlotDefinition(name='has_output', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='Biosample', range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'id': SlotDefinition(name='id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=PatternExpression(syntax='{id_nmdc_prefix}:clsite-{id_shoulder}-{id_blade}{id_version}{id_locus}', interpolated=True, partial_match=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:CollectingBiosamplesFromSite', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'DataObject': ClassDefinition(name='DataObject', id_prefixes=[], definition_uri='https://w3id.org/nmdc/DataObject', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='An object that primarily consists of symbols that represent information. Files, records, and omics data are examples of data objects.', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=['removed previous id_prefixes value of GOLD, since we are now using pattern-based id validation'], comments=['removed id_prefixes value of GOLD, since we are now using pattern-based id validation'], examples=[], in_subset=['data object subset'], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='NamedThing', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['alternative_identifiers', 'file_size_bytes', 'md5_checksum', 'data_object_type', 'compression_type', 'was_generated_by', 'url', 'type', 'DataObject_name', 'DataObject_description', 'DataObject_id'], slot_usage={'name': SlotDefinition(name='name', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'description': SlotDefinition(name='description', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'id': SlotDefinition(name='id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=PatternExpression(syntax='{id_nmdc_prefix}:dobj-{id_shoulder}-{id_blade}{id_version}{id_locus}', interpolated=True, partial_match=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:DataObject', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'Biosample': ClassDefinition(name='Biosample', id_prefixes=[], definition_uri='https://w3id.org/nmdc/Biosample', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='Biological source material which can be characterized by an experiment.', alt_descriptions={'embl.ena': AltDescription(source='embl.ena', description='A sample contains information about the sequenced source material. Samples are associated with checklists, which define the fields used to annotate the samples. Samples are always associated with a taxon.')}, title=None, deprecated=None, todos=[\"could add GOLD and EBI's biosample definitions to the alt_descriptions?\"], notes=['removed previous id_prefixes value of GOLD, since we are now using pattern-based id validation'], comments=[], examples=[], in_subset=['sample subset'], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=['sample', 'material sample', 'specimen', 'biospecimen'], structured_aliases={}, mappings=[], exact_mappings=['OBI:0000747', 'NCIT:C43412', 'http://purl.obolibrary.org/obo/FBcv_0003024'], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='MaterialEntity', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['name', 'description', 'neon_biosample_identifiers', 'host_taxid', 'embargoed', 'collected_from', 'type', 'img_identifiers', 'samp_name', 'biosample_categories', 'type', 'Biosample_part_of', 'Biosample_id', 'Biosample_alternative_identifiers', 'Biosample_gold_biosample_identifiers', 'insdc_biosample_identifiers', 'emsl_biosample_identifiers', 'igsn_biosample_identifiers', 'abs_air_humidity', 'add_recov_method', 'additional_info', 'address', 'adj_room', 'aero_struc', 'agrochem_addition', 'air_PM_concen', 'air_temp', 'air_temp_regm', 'Biosample_al_sat', 'Biosample_al_sat_meth', 'alkalinity', 'alkalinity_method', 'alkyl_diethers', 'alt', 'aminopept_act', 'ammonium', 'ammonium_nitrogen', 'amount_light', 'ances_data', 'Biosample_annual_precpt', 'annual_temp', 'antibiotic_regm', 'api', 'arch_struc', 'aromatics_pc', 'asphaltenes_pc', 'atmospheric_data', 'avg_dew_point', 'avg_occup', 'avg_temp', 'bac_prod', 'bac_resp', 'bacteria_carb_prod', 'barometric_press', 'basin', 'bathroom_count', 'bedroom_count', 'benzene', 'biochem_oxygen_dem', 'biocide', 'biocide_admin_method', 'biol_stat', 'biomass', 'biotic_regm', 'biotic_relationship', 'bishomohopanol', 'blood_press_diast', 'blood_press_syst', 'bromide', 'build_docs', 'build_occup_type', 'building_setting', 'built_struc_age', 'built_struc_set', 'built_struc_type', 'calcium', 'carb_dioxide', 'carb_monoxide', 'carb_nitro_ratio', 'ceil_area', 'ceil_cond', 'ceil_finish_mat', 'ceil_struc', 'ceil_texture', 'ceil_thermal_mass', 'ceil_type', 'ceil_water_mold', 'chem_administration', 'chem_mutagen', 'chem_oxygen_dem', 'chem_treat_method', 'chem_treatment', 'chimera_check', 'chloride', 'chlorophyll', 'Biosample_climate_environment', 'collection_date', 'conduc', 'cool_syst_id', 'core field', 'crop_rotation', 'cult_root_med', 'cur_land_use', 'Biosample_cur_vegetation', 'Biosample_cur_vegetation_meth', 'date_last_rain', 'density', 'depos_env', 'depth', 'dew_point', 'diether_lipids', 'diss_carb_dioxide', 'diss_hydrogen', 'diss_inorg_carb', 'diss_inorg_nitro', 'diss_inorg_phosp', 'diss_iron', 'diss_org_carb', 'diss_org_nitro', 'diss_oxygen', 'diss_oxygen_fluid', 'dna_cont_well', 'door_comp_type', 'door_cond', 'door_direct', 'door_loc', 'door_mat', 'door_move', 'door_size', 'door_type', 'door_type_metal', 'door_type_wood', 'door_water_mold', 'down_par', 'drainage_class', 'drawings', 'ecosystem', 'ecosystem_category', 'ecosystem_subtype', 'ecosystem_type', 'efficiency_percent', 'Biosample_elev', 'elevator', 'emulsions', 'Biosample_env_broad_scale', 'Biosample_env_local_scale', 'Biosample_env_medium', 'env_package', 'environment field', 'escalator', 'ethylbenzene', 'exp_duct', 'exp_pipe', 'experimental_factor', 'ext_door', 'ext_wall_orient', 'ext_window_orient', 'Biosample_extreme_event', 'fao_class', 'fertilizer_regm', 'field', 'filter_type', 'Biosample_fire', 'fireplace_type', 'Biosample_flooding', 'floor_age', 'floor_area', 'floor_cond', 'floor_count', 'floor_finish_mat', 'floor_struc', 'floor_thermal_mass', 'floor_water_mold', 'fluor', 'freq_clean', 'freq_cook', 'fungicide_regm', 'furniture', 'Biosample_gaseous_environment', 'gaseous_substances', 'gender_restroom', 'genetic_mod', 'geo_loc_name', 'glucosidase_act', 'gravidity', 'gravity', 'growth_facil', 'growth_habit', 'growth_hormone_regm', 'hall_count', 'handidness', 'has numeric value', 'has raw value', 'has unit', 'hc_produced', 'hcr', 'hcr_fw_salinity', 'hcr_geol_age', 'hcr_pressure', 'hcr_temp', 'heat_cool_type', 'heat_deliv_loc', 'heat_sys_deliv_meth', 'heat_system_id', 'Biosample_heavy_metals', 'Biosample_heavy_metals_meth', 'height_carper_fiber', 'herbicide_regm', 'horizon_meth', 'host_age', 'host_body_habitat', 'host_body_product', 'host_body_site', 'host_body_temp', 'host_color', 'host_common_name', 'host_diet', 'host_dry_mass', 'host_family_relation', 'host_genotype', 'host_growth_cond', 'host_height', 'host_last_meal', 'host_length', 'host_life_stage', 'host_phenotype', 'host_sex', 'host_shape', 'host_subject_id', 'host_subspecf_genlin', 'host_substrate', 'host_symbiont', 'host_taxid', 'host_tot_mass', 'host_wet_mass', 'humidity', 'humidity_regm', 'indoor_space', 'indoor_surf', 'indust_eff_percent', 'inorg_particles', 'inside_lux', 'int_wall_cond', 'investigation field', 'iw_bt_date_well', 'iwf', 'last_clean', 'Biosample_lat_lon', 'lbc_thirty', 'lbceq', 'light_intensity', 'light_regm', 'light_type', 'link_addit_analys', 'link_class_info', 'link_climate_info', 'lithology', 'local_class', 'local_class_meth', 'magnesium', 'manganese', 'max_occup', 'mean_frict_vel', 'mean_peak_frict_vel', 'mech_struc', 'mechanical_damage', 'methane', 'micro_biomass_meth', 'microbial_biomass', 'mineral_nutr_regm', 'misc_param', 'n_alkanes', 'nitrate', 'nitrate_nitrogen', 'nitrite', 'nitrite_nitrogen', 'nitro', 'non_min_nutr_regm', 'nucl_acid_amp', 'nucl_acid_ext', 'nucleic acid sequence source field', 'number_pets', 'number_plants', 'number_resident', 'occup_density_samp', 'occup_document', 'occup_samp', 'org_carb', 'org_count_qpcr_info', 'org_matter', 'org_nitro', 'org_particles', 'organism_count', 'owc_tvdss', 'Biosample_oxy_stat_samp', 'oxygen', 'part_org_carb', 'part_org_nitro', 'particle_class', 'pcr_cond', 'pcr_primers', 'permeability', 'perturbation', 'pesticide_regm', 'petroleum_hydrocarb', 'ph', 'Biosample_ph_meth', 'ph_regm', 'phaeopigments', 'phosphate', 'phosplipid_fatt_acid', 'photon_flux', 'plant_growth_med', 'plant_product', 'plant_sex', 'plant_struc', 'pollutants', 'pool_dna_extracts', 'porosity', 'potassium', 'pour_point', 'pre_treatment', 'pres_animal_insect', 'pressure', 'prev_land_use_meth', 'previous_land_use', 'primary_prod', 'primary_treatment', 'prod_rate', 'prod_start_date', 'profile_position', 'quad_pos', 'radiation_regm', 'rainfall_regm', 'reactor_type', 'redox_potential', 'rel_air_humidity', 'rel_humidity_out', 'rel_samp_loc', 'reservoir', 'resins_pc', 'room_air_exch_rate', 'room_architec_elem', 'room_condt', 'room_connected', 'room_count', 'room_dim', 'room_door_dist', 'room_door_share', 'room_hallway', 'room_loc', 'room_moist_dam_hist', 'room_net_area', 'room_occup', 'room_samp_pos', 'room_type', 'room_vol', 'room_wall_share', 'room_window_count', 'root_cond', 'root_med_carbon', 'root_med_macronutr', 'root_med_micronutr', 'root_med_ph', 'root_med_regl', 'root_med_solid', 'root_med_suppl', 'salinity', 'Biosample_salinity_meth', 'salt_regm', 'samp_capt_status', 'samp_collec_device', 'samp_collec_method', 'samp_collect_point', 'samp_dis_stage', 'samp_floor', 'samp_loc_corr_rate', 'samp_mat_process', 'samp_md', 'samp_name', 'samp_preserv', 'samp_room_id', 'samp_size', 'samp_sort_meth', 'samp_store_dur', 'samp_store_loc', 'samp_store_temp', 'samp_subtype', 'samp_taxon_id', 'samp_time_out', 'samp_transport_cond', 'samp_tvdss', 'samp_type', 'samp_vol_we_dna_ext', 'samp_weather', 'samp_well_name', 'saturates_pc', 'season', 'season_environment', 'Biosample_season_precpt', 'season_temp', 'season_use', 'secondary_treatment', 'sediment_type', 'seq_meth', 'seq_quality_check', 'sequencing field', 'sewage_type', 'shad_dev_water_mold', 'shading_device_cond', 'shading_device_loc', 'shading_device_mat', 'shading_device_type', 'Biosample_sieving', 'silicate', 'size_frac', 'size_frac_low', 'size_frac_up', 'Biosample_slope_aspect', 'Biosample_slope_gradient', 'sludge_retent_time', 'sodium', 'soil_horizon', 'soil_text_measure', 'soil_texture_meth', 'soil_type', 'soil_type_meth', 'solar_irradiance', 'soluble_inorg_mat', 'soluble_org_mat', 'soluble_react_phosp', 'Biosample_source_mat_id', 'space_typ_state', 'specific', 'specific_ecosystem', 'specific_humidity', 'sr_dep_env', 'sr_geol_age', 'sr_kerog_type', 'sr_lithology', 'standing_water_regm', 'store_cond', 'substructure_type', 'sulfate', 'sulfate_fw', 'sulfide', 'surf_air_cont', 'surf_humidity', 'surf_material', 'surf_moisture', 'surf_moisture_ph', 'surf_temp', 'suspend_part_matter', 'suspend_solids', 'tan', 'target_gene', 'target_subfragment', 'temp', 'temp_out', 'tertiary_treatment', 'tidal_stage', 'tillage', 'tiss_cult_growth_med', 'toluene', 'Biosample_tot_carb', 'tot_depth_water_col', 'tot_diss_nitro', 'tot_inorg_nitro', 'tot_iron', 'tot_nitro', 'Biosample_tot_nitro_cont_meth', 'Biosample_tot_nitro_content', 'Biosample_tot_org_c_meth', 'Biosample_tot_org_carb', 'tot_part_carb', 'tot_phosp', 'tot_phosphate', 'tot_sulfur', 'train_line', 'train_stat_loc', 'train_stop_loc', 'turbidity', 'tvdss_of_hcr_press', 'tvdss_of_hcr_temp', 'typ_occup_density', 'ventilation_rate', 'ventilation_type', 'vfa', 'vfa_fw', 'vis_media', 'viscosity', 'volatile_org_comp', 'wall_area', 'wall_const_type', 'wall_finish_mat', 'wall_height', 'wall_loc', 'wall_surf_treatment', 'wall_texture', 'wall_thermal_mass', 'wall_water_mold', 'wastewater_type', 'Biosample_water_cont_soil_meth', 'Biosample_water_content', 'water_current', 'water_cut', 'water_feat_size', 'water_feat_type', 'water_prod_rate', 'water_temp_regm', 'Biosample_watering_regm', 'weekday', 'win', 'wind_direction', 'wind_speed', 'window_cond', 'window_cover', 'window_horiz_pos', 'window_loc', 'window_mat', 'window_open_freq', 'window_size', 'window_status', 'window_type', 'window_vert_pos', 'window_water_mold', 'xylene', 'zinc', 'ecosystem', 'ecosystem_category', 'ecosystem_type', 'ecosystem_subtype', 'specific_ecosystem', 'add_date', 'community', 'habitat', 'host_name', 'location', 'mod_date', 'ncbi_taxonomy_name', 'proport_woa_temperature', 'salinity_category', 'sample_collection_site', 'soluble_iron_micromol', 'subsurface_depth', 'air_temp_regm', 'biotic_regm', 'biotic_relationship', 'climate_environment', 'experimental_factor', 'gaseous_environment', 'growth_facil', 'humidity_regm', 'light_regm', 'phosphate', 'samp_collec_method', 'samp_size', 'source_mat_id', 'watering_regm', 'dna_absorb1', 'dna_absorb2', 'dna_collect_site', 'dna_concentration', 'dna_cont_type', 'dna_cont_well', 'dna_container_id', 'dna_dnase', 'dna_isolate_meth', 'dna_organisms', 'dna_project_contact', 'dna_samp_id', 'dna_sample_format', 'dna_sample_name', 'dna_seq_project', 'dna_seq_project_pi', 'dna_seq_project_name', 'dna_volume', 'proposal_dna', 'dnase_rna', 'proposal_rna', 'rna_absorb1', 'rna_absorb2', 'rna_collect_site', 'rna_concentration', 'rna_cont_type', 'rna_cont_well', 'rna_container_id', 'rna_isolate_meth', 'rna_organisms', 'rna_project_contact', 'rna_samp_id', 'rna_sample_format', 'rna_sample_name', 'rna_seq_project', 'rna_seq_project_pi', 'rna_seq_project_name', 'rna_volume', 'collection_date_inc', 'collection_time', 'collection_time_inc', 'experimental_factor_other', 'filter_method', 'isotope_exposure', 'micro_biomass_c_meth', 'micro_biomass_n_meth', 'microbial_biomass_c', 'microbial_biomass_n', 'non_microb_biomass', 'non_microb_biomass_method', 'org_nitro_method', 'other_treatment', 'start_date_inc', 'start_time_inc', 'project_id', 'replicate_number', 'sample_shipped', 'sample_type', 'technical_reps', 'analysis_type', 'sample_link', 'zinc', 'manganese', 'ammonium_nitrogen', 'nitrate_nitrogen', 'nitrite_nitrogen', 'lbc_thirty', 'lbceq'], slot_usage={'elev': SlotDefinition(name='elev', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title='elevation, meters', deprecated=None, todos=[], notes=[], comments=['All elevations must be reported in meters. Provide the numerical portion only.'], examples=[Example(value='100', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='float', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'oxy_stat_samp': SlotDefinition(name='oxy_stat_samp', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='oxy_stat_samp_enum', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'id': SlotDefinition(name='id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='An NMDC assigned unique identifier for a biosample submitted to NMDC.', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=PatternExpression(syntax='{id_nmdc_prefix}:bsm-{id_shoulder}-{id_blade}{id_version}{id_locus}', interpolated=True, partial_match=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'gold_biosample_identifiers': SlotDefinition(name='gold_biosample_identifiers', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={'display_hint': Annotation(tag='display_hint', value='Provide the GOLD biosample IDs associated with this biosample.', extensions={}, annotations={})}, description='Unique identifier for a biosample submitted to GOLD that matches the NMDC submitted biosample', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[\"This is the ID provided by GOLD that starts with 'GB'\"], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'alternative_identifiers': SlotDefinition(name='alternative_identifiers', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='Unique identifier for a biosample submitted to additional resources. Matches the entity that has been submitted to NMDC', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'lat_lon': SlotDefinition(name='lat_lon', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=\"This is currently a required field but it's not clear if this should be required for human hosts\", alt_descriptions={}, title=None, deprecated=None, todos=[], notes=['required where?'], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'env_broad_scale': SlotDefinition(name='env_broad_scale', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'env_local_scale': SlotDefinition(name='env_local_scale', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'env_medium': SlotDefinition(name='env_medium', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'part_of': SlotDefinition(name='part_of', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='Study', range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'fire': SlotDefinition(name='fire', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={'expected_value': Annotation(tag='expected_value', value='date string', extensions={}, annotations={})}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=['is \"to\" acceptable? Is there a better way to request that be written?', 'This is no longer matching the listed IRI from GSC. When NMDC has its own slots, map this to the MIxS slot'], notes=[], comments=['Provide the date the fire occurred. If extended burning occurred provide the date range.'], examples=[Example(value='1871-10-10', description=None, object=None), Example(value='1871-10-01 to 1871-10-31', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='string', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern='^[12]\\\\d{3}(?:(?:-(?:0[1-9]|1[0-2]))(?:-(?:0[1-9]|[12]\\\\d|3[01]))?)?(\\\\s+to\\\\s+[12]\\\\d{3}(?:(?:-(?:0[1-9]|1[0-2]))(?:-(?:0[1-9]|[12]\\\\d|3[01]))?)?)?$', structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'flooding': SlotDefinition(name='flooding', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={'expected_value': Annotation(tag='expected_value', value='date string', extensions={}, annotations={})}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=['is \"to\" acceptable? Is there a better way to request that be written?', 'What about if the \"day\" isn\\'t known? Is this ok?', 'This is no longer matching the listed IRI from GSC. When NMDC has its own slots, map this to the MIxS slot'], notes=[], comments=['Provide the date the flood occurred. If extended flooding occurred provide the date range.'], examples=[Example(value='1927-04-15', description=None, object=None), Example(value='1927-04 to 1927-05', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='string', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'extreme_event': SlotDefinition(name='extreme_event', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={'expected_value': Annotation(tag='expected_value', value='date, string', extensions={}, annotations={})}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=['This is no longer matching the listed IRI from GSC. When NMDC has its own slots, map this to the MIxS slot'], notes=[], comments=[], examples=[Example(value='1980-05-18, volcanic eruption', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='string', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'slope_aspect': SlotDefinition(name='slope_aspect', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='The direction a slope faces. While looking down a slope use a compass to record the direction you are facing (direction or degrees). - This measure provides an indication of sun and wind exposure that will influence soil temperature and evapotranspiration.', alt_descriptions={}, title=None, deprecated=None, todos=['This is no longer matching the listed IRI from GSC. When NMDC has its own slots, map this to the MIxS slot'], notes=[], comments=['Aspect is the orientation of slope, measured clockwise in degrees from 0 to 360, where 0 is north-facing, 90 is east-facing, 180 is south-facing, and 270 is west-facing.'], examples=[Example(value='35', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'slope_gradient': SlotDefinition(name='slope_gradient', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=['Slope is a percent. How does the validation work? Check to correct examples'], notes=[], comments=[], examples=[Example(value='10%', description=None, object=None), Example(value='10 %', description=None, object=None), Example(value='0.1', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'al_sat': SlotDefinition(name='al_sat', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='The relative abundance of aluminum in the sample', alt_descriptions={}, title='aluminum saturation/ extreme unusual properties', deprecated=None, todos=['This is no longer matching the listed IRI from GSC. When NMDC has its own slots, map this to the MIxS slot', 'Example & validation. Can we make rules that 27% & 27 % & 0.27 will validate?', \"I think it's weird the way GSC writes the title. I recommend this change. Thoughts? I would argue this isn't an extreme unusual property. It's just a biogeochemical measurement.\"], notes=[], comments=['Aluminum saturation is the percentage of the CEC occupies by aluminum. Like all cations, aluminum held by the cation exchange complex is in equilibrium with aluminum in the soil solution.'], examples=[Example(value='27%', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'al_sat_meth': SlotDefinition(name='al_sat_meth', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='Reference or method used in determining Aluminum saturation', alt_descriptions={}, title='aluminum saturation method/ extreme unusual properties', deprecated=None, todos=['This is no longer matching the listed IRI from GSC. When NMDC has its own slots, map this to the MIxS slot', \"I think it's weird the way GSC writes the title. I recommend this change. Thoughts?\"], notes=[], comments=['Required when aluminum saturation is provided.'], examples=[Example(value='https://doi.org/10.1371/journal.pone.0176357', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'annual_precpt': SlotDefinition(name='annual_precpt', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=['This is no longer matching the listed IRI from GSC, added example. When NMDC has its own slots, map this to the MIxS slot'], notes=[], comments=[], examples=[Example(value='8.94 inch', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'cur_vegetation': SlotDefinition(name='cur_vegetation', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='Vegetation classification from one or more standard classification systems, or agricultural crop', alt_descriptions={}, title=None, deprecated=None, todos=['This is no longer matching the listed IRI from GSC. When NMDC has its own slots, map this to the MIxS slot', 'Recommend changing this from text value to some king of ontology?'], notes=[], comments=['Values provided here can be specific species of vegetation or vegetation regions', 'See for vegetation regions- https://education.nationalgeographic.org/resource/vegetation-region'], examples=[Example(value='deciduous forest', description=None, object=None), Example(value='forest', description=None, object=None), Example(value='Bauhinia variegata', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'cur_vegetation_meth': SlotDefinition(name='cur_vegetation_meth', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=['This is no longer matching the listed IRI from GSC. When NMDC has its own slots, map this to the MIxS slot', \"I'm not sure this is a DOI, PMID, or URI. Should pool the community and find out how they accomplish this if provided.\"], notes=[], comments=['Required when current vegetation is provided.'], examples=[Example(value='https://doi.org/10.1111/j.1654-109X.2011.01154.x', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'heavy_metals': SlotDefinition(name='heavy_metals', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='Heavy metals present in the sample and their concentrations.', alt_descriptions={}, title='heavy metals/ extreme unusual properties', deprecated=None, todos=['This is no longer matching the listed IRI from GSC. When NMDC has its own slots, map this to the MIxS slot', 'Example & validation. Can we make rules that 27% & 27 % & 0.27 will validate?', \"I think it's weird the way GSC writes the title. I recommend this change. Thoughts? I would argue this isn't an extreme unusual property. It's just a biogeochemical measurement.\"], notes=[\"Changed to multi-valued. In MIxS, you add another column to denote multiple heavy metals. We don't have that ability in the submission portal.\"], comments=['For multiple heavy metals and concentrations, separate by ;'], examples=[Example(value='mercury 0.09 micrograms per gram', description=None, object=None), Example(value='mercury 0.09 ug/g; chromium 0.03 ug/g', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'heavy_metals_meth': SlotDefinition(name='heavy_metals_meth', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title='heavy metals method/ extreme unusual properties', deprecated=None, todos=['This is no longer matching the listed IRI from GSC. When NMDC has its own slots, map this to the MIxS slot'], notes=[], comments=['Required when heavy metals are provided', 'If different methods are used for multiple metals, indicate the metal and method. Separate metals by ;'], examples=[Example(value='https://doi.org/10.3390/ijms9040434', description=None, object=None), Example(value='mercury https://doi.org/10.1007/BF01056090; chromium https://doi.org/10.1007/s00216-006-0322-8', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=True, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'season_precpt': SlotDefinition(name='season_precpt', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title='average seasonal precipitation', deprecated=None, todos=['This is no longer matching the listed IRI from GSC. When NMDC has its own slots, map this to the MIxS slot', 'check validation & examples. always mm? so value only? Or value + unit'], notes=['mean and average are the same thing, but it seems like bad practice to not be consistent. Changed mean to average'], comments=['Seasons are defined as spring (March, April, May), summer (June, July, August), autumn (September, October, November) and winter (December, January, February).'], examples=[Example(value='0.4 inch', description=None, object=None), Example(value='10.16 mm', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'water_cont_soil_meth': SlotDefinition(name='water_cont_soil_meth', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=['Why is it soil water content method in the name but not the title? Is this slot used in other samples?', 'Soil water content can be measure MANY ways and often, multiple ways are used in one experiment (gravimetric water content and water holding capacity and water filled pore space, to name a few).', 'Should this be multi valued? How to we manage and validate this?'], notes=[], comments=['Required if providing water content'], examples=[Example(value='J. Nat. Prod. Plant Resour., 2012, 2 (4):500-503', description=None, object=None), Example(value='https://dec.alaska.gov/applications/spar/webcalc/definitions.htm', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'water_content': SlotDefinition(name='water_content', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={'expected_value': Annotation(tag='expected_value', value='string', extensions={}, annotations={}), 'preferred_unit': Annotation(tag='preferred_unit', value='gram per gram or cubic centimeter per cubic centimeter', extensions={}, annotations={})}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=['value in preferred unit is too limiting. need to change this', 'check and correct validation so examples are accepted', 'This is no longer matching the listed IRI from GSC. When NMDC has its own slots, map this to the MIxS slot', 'how to manage multiple water content methods?'], notes=[], comments=[], examples=[Example(value='75%', description=None, object=None), Example(value='75 %', description=None, object=None), Example(value='0.75 g water/g dry soil', description=None, object=None), Example(value='75% water holding capacity', description=None, object=None), Example(value='1.1 g fresh weight/ dry weight', description=None, object=None), Example(value='10% water filled pore space', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=True, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='string', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'ph_meth': SlotDefinition(name='ph_meth', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=['This can include a link to the instrument used or a citation for the method.'], examples=[Example(value='https://www.southernlabware.com/pc9500-benchtop-ph-conductivity-meter-kit-ph-accuracy-2000mv-ph-range-2-000-to-20-000.html?gclid=Cj0KCQiAwJWdBhCYARIsAJc4idCO5vtvbVMf545fcvdROFqa6zjzNSoywNx6K4k9Coo9cCc2pybtvGsaAiR0EALw_wcB', description=None, object=None), Example(value='https://doi.org/10.2136/sssabookser5.3.c16', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'tot_carb': SlotDefinition(name='tot_carb', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=['is this inorganic and organic? both? could use some clarification.', \"ug/L doesn't seem like the right units. Should check this slots usage in databases and re-evaluate. I couldn't find any references that provided this data in this format\"], notes=[], comments=[], examples=[Example(value='1 ug/L', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'tot_nitro_cont_meth': SlotDefinition(name='tot_nitro_cont_meth', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[Example(value='https://doi.org/10.2134/agronmonogr9.2.c32', description=None, object=None), Example(value='https://acsess.onlinelibrary.wiley.com/doi/full/10.2136/sssaj2009.0389?casa_token=bm0pYIUdNMgAAAAA%3AOWVRR0STHaOe-afTcTdxn5m1hM8n2ltM0wY-b1iYpYdD9dhwppk5j3LvC2IO5yhOIvyLVeQz4NZRCZo', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'tot_nitro_content': SlotDefinition(name='tot_nitro_content', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[Example(value='5 mg N/ L', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'tot_org_c_meth': SlotDefinition(name='tot_org_c_meth', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[Example(value='https://doi.org/10.1080/07352680902776556', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'tot_org_carb': SlotDefinition(name='tot_org_carb', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=['check description. How are they different?'], notes=[], comments=[], examples=[Example(value='5 mg N/ L', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'salinity_meth': SlotDefinition(name='salinity_meth', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[Example(value='https://doi.org/10.1007/978-1-61779-986-0_28', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'sieving': SlotDefinition(name='sieving', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=['check validation and examples'], notes=[], comments=['Describe how samples were composited or sieved.', \"Use 'sample link' to indicate which samples were combined.\"], examples=[Example(value='combined 2 cores | 4mm sieved', description=None, object=None), Example(value='4 mm sieved and homogenized', description=None, object=None), Example(value='50 g | 5 cores | 2 mm sieved', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'climate_environment': SlotDefinition(name='climate_environment', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=['description says \"can include multiple climates\" but multivalued is set to false', 'add examples, i need to see some examples to add correctly formatted example.'], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'gaseous_environment': SlotDefinition(name='gaseous_environment', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[\"would like to see usage examples for this slot. Requiring micromole/L seems too limiting and doesn't match expected_value value\", \"did I do this right? keep the example that's provided and add another? so as to not override\"], notes=[], comments=[], examples=[Example(value='CO2; 500ppm above ambient; constant', description=None, object=None), Example(value='nitric oxide;0.5 micromole per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'watering_regm': SlotDefinition(name='watering_regm', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[Example(value='1 liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M', description=None, object=None), Example(value='75% water holding capacity; constant', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'source_mat_id': SlotDefinition(name='source_mat_id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A globally unique identifier assigned to the biological sample.', alt_descriptions={}, title='source material identifier', deprecated=None, todos=['Currently, the comments say to use UUIDs. However, if we implement assigning NMDC identifiers with the minter we dont need to require a GUID. It can be an optional field to fill out only if they already have a resolvable ID.'], notes=[], comments=['Identifiers must be prefixed. Possible FAIR prefixes are IGSNs (http://www.geosamples.org/getigsn), NCBI biosample accession numbers, ARK identifiers (https://arks.org/). These IDs enable linking to derived analytes and subsamples. If you have not assigned FAIR identifiers to your samples, you can generate UUIDs (https://www.uuidgenerator.net/).'], examples=[Example(value='IGSN:AU1243', description=None, object=None), Example(value='UUID:24f1467a-40f4-11ed-b878-0242ac120002', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:Biosample', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={'samp_name_unique_key': UniqueKey(unique_key_name='samp_name_unique_key', unique_key_slots=['samp_name'], consider_nulls_inequal=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[\"id is already required to be unique because it is the identifier in Biosample's parent class, NamedThing. Remember, notes like this could be exposed to end users. CJM suggested YAML # comment\"], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, rules=[ClassRule(preconditions=AnonymousClassExpression(extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={'dna_cont_well': SlotDefinition(name='dna_cont_well', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern='.+', structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}), postconditions=AnonymousClassExpression(extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={'dna_cont_type': SlotDefinition(name='dna_cont_type', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string='plate', equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}), elseconditions=None, bidirectional=None, open_world=None, rank=None, deactivated=None, extensions={}, annotations={}, description=\"DNA samples shipped to JGI for metagenomic analysis in tubes can't have any value for their plate position.\", alt_descriptions={}, title='dna_well_requires_plate', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None), ClassRule(preconditions=AnonymousClassExpression(extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={'dna_cont_type': SlotDefinition(name='dna_cont_type', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string='plate', equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}), postconditions=AnonymousClassExpression(extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={'dna_cont_well': SlotDefinition(name='dna_cont_well', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern='^(?!A1|A12|H1|H12)(([A-H][1-9])|([A-H]1[0-2]))$', structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}), elseconditions=None, bidirectional=None, open_world=None, rank=None, deactivated=None, extensions={}, annotations={}, description='DNA samples in plates must have a plate position that matches the regex. Note the requirement for an empty string in the tube case. Waiting for value_present validation to be added to runtime', alt_descriptions={}, title='dna_plate_requires_well', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None), ClassRule(preconditions=AnonymousClassExpression(extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={'rna_cont_well': SlotDefinition(name='rna_cont_well', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern='.+', structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}), postconditions=AnonymousClassExpression(extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={'rna_cont_type': SlotDefinition(name='rna_cont_type', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string='plate', equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}), elseconditions=None, bidirectional=None, open_world=None, rank=None, deactivated=None, extensions={}, annotations={}, description=\"RNA samples shipped to JGI for metagenomic analysis in tubes can't have any value for their plate position.\", alt_descriptions={}, title='rna_well_requires_plate', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None), ClassRule(preconditions=AnonymousClassExpression(extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={'rna_cont_type': SlotDefinition(name='rna_cont_type', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string='plate', equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}), postconditions=AnonymousClassExpression(extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={'rna_cont_well': SlotDefinition(name='rna_cont_well', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern='^(?!A1|A12|H1|H12)(([A-H][1-9])|([A-H]1[0-2]))$', structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}), elseconditions=None, bidirectional=None, open_world=None, rank=None, deactivated=None, extensions={}, annotations={}, description='RNA samples in plates must have a plate position that matches the regex. Note the requirement for an empty string in the tube case. Waiting for value_present validation to be added to runtime', alt_descriptions={}, title='rna_plate_requires_well', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None)], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'Study': ClassDefinition(name='Study', id_prefixes=[], definition_uri='https://w3id.org/nmdc/Study', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A study summarizes the overall goal of a research initiative and outlines the key objective of its underlying projects.', alt_descriptions={'embl.ena': AltDescription(source='embl.ena', description='A study (project) groups together data submitted to the archive and controls its release date. A study accession is typically used when citing data submitted to ENA')}, title=None, deprecated=None, todos=['determine how to get data values for submitted_to_insdc, investigation_type, experimental_factor', 'project_name is redundant with name, so excluding it'], notes=['sample GOLD link https://identifiers.org/gold:Gs0110115', 'sample insdc.srs link https://www.ebi.ac.uk/ena/browser/view/PRJEB45055 ?', 'sample mgnify link https://www.ebi.ac.uk/metagenomics/studies/MGYS00005757', 'GOLD, insdc.srs and mgnify are reasonable prefixes for alternative study identifiers, but no longer for the Study.id'], comments=[], examples=[], in_subset=['sample subset'], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=['proposal', 'research proposal', 'research study', 'investigation', 'project', 'umbrella project'], structured_aliases={}, mappings=[], exact_mappings=['SIO:001066', 'NCIT:C63536', 'OBI:0000066', 'ISA:Study'], close_mappings=['NCIT:C41198', 'ISA:Investigation'], related_mappings=[], narrow_mappings=[], broad_mappings=['prov:Activity'], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='NamedThing', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['emsl_project_dois', 'neon_study_identifiers', 'Study_id', 'Study_alternative_identifiers', 'gnps_task_identifiers', 'abstract', 'alternative_descriptions', 'Study_alternative_names', 'alternative_titles', 'Study_doi', 'ecosystem', 'ecosystem_category', 'ecosystem_subtype', 'ecosystem_type', 'ess_dive_datasets', 'funding_sources', 'gold_study_identifiers', 'has_credit_associations', 'Study_insdc_bioproject_identifiers', 'massive_study_identifiers', 'mgnify_project_identifiers', 'Study_notes', 'objective', 'principal_investigator', 'publications', 'Study_related_identifiers', 'relevant_protocols', 'specific_ecosystem', 'study_image', 'title', 'type', 'Study_websites', 'Study_name', 'Study_description'], slot_usage={'id': SlotDefinition(name='id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=PatternExpression(syntax='{id_nmdc_prefix}:sty-{id_shoulder}-{id_blade}{id_version}{id_locus}', interpolated=True, partial_match=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'doi': SlotDefinition(name='doi', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={'display_hint': Annotation(tag='display_hint', value='DOI associated with the data in this study. This is required when data is already generated.', extensions={}, annotations={})}, description='The dataset citation for this study', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'name': SlotDefinition(name='name', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={'display_hint': Annotation(tag='display_hint', value='Provide a name for the study your samples will belong with.', extensions={}, annotations={})}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'websites': SlotDefinition(name='websites', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={'display_hint': Annotation(tag='display_hint', value=\"Link to the Principal Investigator's research lab webpage or the study webpage associated with this collection of samples. Multiple links can be provided.\", extensions={}, annotations={})}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'description': SlotDefinition(name='description', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={'display_hint': Annotation(tag='display_hint', value='Provide a brief description of your study.', extensions={}, annotations={})}, description=\"A brief summary that details the study you're submitted to NMDC\", alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'notes': SlotDefinition(name='notes', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={'display_hint': Annotation(tag='display_hint', value='Add any additional notes or comments about this study.', extensions={}, annotations={})}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'alternative_identifiers': SlotDefinition(name='alternative_identifiers', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='Unique identifier for a study submitted to additional resources. Matches that which has been submitted to NMDC', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'alternative_names': SlotDefinition(name='alternative_names', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={'display_hint': Annotation(tag='display_hint', value='Project, study, or sample set names the are also associated with this submission or other names / identifiers for this study.', extensions={}, annotations={})}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'related_identifiers': SlotDefinition(name='related_identifiers', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='Unique identifier for a study submitted to additional resources. Similar, but not necessarily identical to that which has been submitted to NMDC', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'insdc_bioproject_identifiers': SlotDefinition(name='insdc_bioproject_identifiers', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={'display_hint': Annotation(tag='display_hint', value='Provide the NCBI BioProject Accession Number associated with the listed NCBI BioProject Title.', extensions={}, annotations={})}, description='Unique identifier for a bioproject submitted to INSDC that relates to the NMDC submitted study.', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:Study', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'BiosampleProcessing': ClassDefinition(name='BiosampleProcessing', id_prefixes=[], definition_uri='https://w3id.org/nmdc/BiosampleProcessing', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A process that takes one or more biosamples as inputs and generates one or as outputs. Examples of outputs include samples cultivated from another sample or data objects created by instruments runs.', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=['material processing'], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=['OBI:0000094'], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='NamedThing', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['name', 'description', 'alternative_identifiers', 'BiosampleProcessing_has_input', 'BiosampleProcessing_id'], slot_usage={'id': SlotDefinition(name='id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=PatternExpression(syntax='{id_nmdc_prefix}:bsmprc-{id_shoulder}-{id_blade}{id_version}{id_locus}', interpolated=True, partial_match=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'has_input': SlotDefinition(name='has_input', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='Biosample', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:BiosampleProcessing', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'OmicsProcessing': ClassDefinition(name='OmicsProcessing', id_prefixes=[], definition_uri='https://w3id.org/nmdc/OmicsProcessing', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='The methods and processes used to generate omics data from a biosample or organism.', alt_descriptions={'embl.ena': AltDescription(source='embl.ena', description='An experiment contains information about a sequencing experiment including library and instrument details.')}, title=None, deprecated=None, todos=[], notes=[], comments=['The ID prefix for objects coming from GOLD will be gold:Gp'], examples=[], in_subset=['sample subset'], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=['omics assay', 'sequencing project', 'experiment'], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=['OBI:0000070', 'ISA:Assay'], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='BiosampleProcessing', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['name', 'description', 'alternative_identifiers', 'add_date', 'chimera_check', 'gold_sequencing_project_identifiers', 'has_input', 'has_output', 'insdc_experiment_identifiers', 'instrument_name', 'mod_date', 'ncbi_project_name', 'nucl_acid_amp', 'nucl_acid_ext', 'omics_type', 'part_of', 'pcr_cond', 'pcr_primers', 'principal_investigator', 'processing_institution', 'samp_vol_we_dna_ext', 'seq_meth', 'seq_quality_check', 'target_gene', 'target_subfragment', 'type', 'OmicsProcessing_id', 'OmicsProcessing_has_input'], slot_usage={'id': SlotDefinition(name='id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=PatternExpression(syntax='{id_nmdc_prefix}:omprc-{id_shoulder}-{id_blade}{id_version}{id_locus}', interpolated=True, partial_match=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'has_input': SlotDefinition(name='has_input', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:OmicsProcessing', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'CreditAssociation': ClassDefinition(name='CreditAssociation', id_prefixes=[], definition_uri='https://w3id.org/nmdc/CreditAssociation', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='This class supports binding associated researchers to studies. There will be at least a slot for a CRediT Contributor Role (https://casrai.org/credit/) and for a person value Specifically see the associated researchers tab on the NMDC_SampleMetadata-V4_CommentsForUpdates at https://docs.google.com/spreadsheets/d/1INlBo5eoqn2efn4H2P2i8rwRBtnbDVTqXrochJEAPko/edit#gid=0', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=['study role', 'credit table', 'associated researchers'], structured_aliases={}, mappings=['prov:Association'], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['applies_to_person', 'applied_role', 'applied_roles', 'type'], slot_usage={}, attributes={}, class_uri='prov:Association', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'GenomeFeature': ClassDefinition(name='GenomeFeature', id_prefixes=[], definition_uri='https://w3id.org/nmdc/GenomeFeature', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A feature localized to an interval along a genome', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=['corresponds to an entry in GFF3'], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation', imported_from=None, source=None, in_language=None, see_also=['https://github.com/The-Sequence-Ontology/Specifications/blob/master/gff3.md'], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['GenomeFeature_seqid', 'GenomeFeature_type', 'GenomeFeature_start', 'GenomeFeature_end', 'GenomeFeature_strand', 'GenomeFeature_phase', 'GenomeFeature_encodes', 'GenomeFeature_feature_type'], slot_usage={'seqid': SlotDefinition(name='seqid', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='The ID of the landmark used to establish the coordinate system for the current feature.', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='string', range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'type': SlotDefinition(name='type', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A type from the sequence ontology', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='OntologyClass', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'start': SlotDefinition(name='start', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='The start of the feature in positive 1-based integer coordinates', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=['biolink:start_interbase_coordinate'], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='gff_coordinate', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'end': SlotDefinition(name='end', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='The end of the feature in positive 1-based integer coordinates', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=['- \"constraint: end > start\" - \"For features that cross the origin of a circular feature, end = the position of the end + the length of the landmark feature.\"'], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=['biolink:end_interbase_coordinate'], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='gff_coordinate', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'strand': SlotDefinition(name='strand', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=\"The strand on which a feature is located. Has a value of '+' (sense strand or forward strand) or '-' (anti-sense strand or reverse strand).\", alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=['biolink:strand'], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'phase': SlotDefinition(name='phase', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='The phase for a coding sequence entity. For example, phase of a CDS as represented in a GFF3 with a value of 0, 1 or 2.', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=['biolink:phase'], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='integer', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=0, maximum_value=0, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'encodes': SlotDefinition(name='encodes', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='The gene product encoded by this feature. Typically this is used for a CDS feature or gene feature which will encode a protein. It can also be used by a nc transcript ot gene feature that encoded a ncRNA', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='GeneProduct', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'feature_type': SlotDefinition(name='feature_type', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='TODO: Yuri to write', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:GenomeFeature', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'FunctionalAnnotationTerm': ClassDefinition(name='FunctionalAnnotationTerm', id_prefixes=[], definition_uri='https://w3id.org/nmdc/FunctionalAnnotationTerm', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='Abstract grouping class for any term/descriptor that can be applied to a functional unit of a genome (protein, ncRNA, complex).', alt_descriptions={}, title=None, deprecated=None, todos=['decide if this should be used for product naming'], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=['function', 'FunctionalAnnotation'], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='OntologyClass', abstract=True, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['id', 'name', 'description', 'alternative_identifiers'], slot_usage={}, attributes={}, class_uri='nmdc:FunctionalAnnotationTerm', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'Pathway': ClassDefinition(name='Pathway', id_prefixes=['KEGG_PATHWAY', 'COG'], definition_uri='https://w3id.org/nmdc/Pathway', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A pathway is a sequence of steps/reactions carried out by an organism or community of organisms', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=['biological process', 'metabolic pathway', 'signaling pathway'], structured_aliases={}, mappings=[], exact_mappings=['biolink:Pathway'], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='FunctionalAnnotationTerm', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['id', 'name', 'description', 'alternative_identifiers', 'Pathway_has_part'], slot_usage={'has_part': SlotDefinition(name='has_part', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A pathway can be broken down to a series of reaction step', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=True, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='Reaction', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:Pathway', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'Reaction': ClassDefinition(name='Reaction', id_prefixes=['KEGG.REACTION', 'RHEA', 'MetaCyc', 'EC', 'GO', 'MetaNetX', 'SEED', 'RetroRules'], definition_uri='https://w3id.org/nmdc/Reaction', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='An individual biochemical transformation carried out by a functional unit of an organism, in which a collection of substrates are transformed into a collection of products. Can also represent transporters', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=['biolink:MolecularActivity'], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='FunctionalAnnotationTerm', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['id', 'name', 'description', 'alternative_identifiers', 'Reaction_left_participants', 'Reaction_right_participants', 'Reaction_direction', 'Reaction_smarts_string', 'Reaction_is_diastereoselective', 'Reaction_is_stereo', 'Reaction_is_balanced', 'Reaction_is_transport', 'Reaction_is_fully_characterized'], slot_usage={'left_participants': SlotDefinition(name='left_participants', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='has_participants', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=True, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='ReactionParticipant', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'right_participants': SlotDefinition(name='right_participants', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='has_participants', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=True, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='ReactionParticipant', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'direction': SlotDefinition(name='direction', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='One of l->r, r->l, bidirectional, neutral', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'smarts_string': SlotDefinition(name='smarts_string', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='string', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'is_diastereoselective': SlotDefinition(name='is_diastereoselective', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='boolean', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'is_stereo': SlotDefinition(name='is_stereo', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='boolean', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'is_balanced': SlotDefinition(name='is_balanced', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='boolean', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'is_transport': SlotDefinition(name='is_transport', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='boolean', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'is_fully_characterized': SlotDefinition(name='is_fully_characterized', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='False if includes R-groups', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='boolean', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:Reaction', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'ReactionParticipant': ClassDefinition(name='ReactionParticipant', id_prefixes=[], definition_uri='https://w3id.org/nmdc/ReactionParticipant', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='Instances of this link a reaction to a chemical entity participant', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['ReactionParticipant_chemical', 'ReactionParticipant_stoichiometry'], slot_usage={'chemical': SlotDefinition(name='chemical', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='ChemicalEntity', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'stoichiometry': SlotDefinition(name='stoichiometry', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='integer', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:ReactionParticipant', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'OrthologyGroup': ClassDefinition(name='OrthologyGroup', id_prefixes=['CATH', 'EGGNOG', 'KEGG.ORTHOLOGY', 'PANTHER.FAMILY', 'PFAM', 'SUPFAM', 'TIGRFAM'], definition_uri='https://w3id.org/nmdc/OrthologyGroup', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A set of genes or gene products in which all members are orthologous', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=['KEGG.ORTHOLOGY prefix is used for KO numbers'], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=['biolink:GeneFamily'], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='FunctionalAnnotationTerm', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['id', 'name', 'description', 'alternative_identifiers'], slot_usage={}, attributes={}, class_uri='nmdc:OrthologyGroup', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'FunctionalAnnotation': ClassDefinition(name='FunctionalAnnotation', id_prefixes=[], definition_uri='https://w3id.org/nmdc/FunctionalAnnotation', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='An assignment of a function term (e.g. reaction or pathway) that is executed by a gene product, or which the gene product plays an active role in. Functional annotations can be assigned manually by curators, or automatically in workflows. In the context of NMDC, all function annotation is performed automatically, typically using HMM or Blast type methods', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=['move id slot usage patterns to has_function slot usage?'], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/annotation', imported_from=None, source=None, in_language=None, see_also=['https://img.jgi.doe.gov/docs/functional-annotation.pdf', 'https://github.com/microbiomedata/mg_annotation/blob/master/functional-annotation.wdl'], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=['biolink:GeneToGoTermAssociation'], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['FunctionalAnnotation_was_generated_by', 'subject', 'FunctionalAnnotation_has_function', 'FunctionalAnnotation_type'], slot_usage={'has_function': SlotDefinition(name='has_function', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=['this slot had been called id', 'Still missing patterns for COG and RetroRules.', \"These patterns aren't tied to the listed prefixes. A discussion about that possibility had been started, including the question of whether these lists are intended to be open examples or closed\"], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern='^(KEGG_PATHWAY:\\\\w{2,4}\\\\d{5}|KEGG.REACTION:R\\\\d+|RHEA:\\\\d{5}|MetaCyc:[A-Za-z0-9+_.%-:]+|EC:\\\\d{1,2}(\\\\.\\\\d{0,3}){0,3}|GO:\\\\d{7}|MetaNetX:(MNXR\\\\d+|EMPTY)|SEED:\\\\w+|KEGG\\\\.ORTHOLOGY:K\\\\d+|EGGNOG:\\\\w+|PFAM:PF\\\\d{5}|TIGRFAM:TIGR\\\\d+|SUPFAM:\\\\w+|CATH:[1-6]\\\\.[0-9]+\\\\.[0-9]+\\\\.[0-9]+|PANTHER.FAMILY:PTHR\\\\d{5}(\\\\:SF\\\\d{1,3})?)$', structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'type': SlotDefinition(name='type', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='TODO', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='OntologyClass', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'was_generated_by': SlotDefinition(name='was_generated_by', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='provenance for the annotation.', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=['Note to be consistent with the rest of the NMDC schema we use the PROV annotation model, rather than GPAD'], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='MetagenomeAnnotationActivity', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:FunctionalAnnotation', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'NamedThing': ClassDefinition(name='NamedThing', id_prefixes=[], definition_uri='https://w3id.org/nmdc/NamedThing', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='a databased entity or concept/class', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=True, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['id', 'name', 'description', 'alternative_identifiers'], slot_usage={}, attributes={}, class_uri='nmdc:NamedThing', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'MaterialEntity': ClassDefinition(name='MaterialEntity', id_prefixes=[], definition_uri='https://w3id.org/nmdc/MaterialEntity', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title='Material Entity', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=['Material', 'Physical entity'], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='NamedThing', abstract=True, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['id', 'name', 'description', 'alternative_identifiers'], slot_usage={}, attributes={}, class_uri='nmdc:MaterialEntity', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'ProcessedSample': ClassDefinition(name='ProcessedSample', id_prefixes=[], definition_uri='https://w3id.org/nmdc/ProcessedSample', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title='Processed Sample', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='MaterialEntity', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['name', 'description', 'alternative_identifiers', 'biomaterial_purity', 'dna_absorb1', 'dna_concentration', 'external_database_identifiers', 'nucleic_acid_concentration', 'ProcessedSample_id'], slot_usage={'id': SlotDefinition(name='id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=PatternExpression(syntax='{id_nmdc_prefix}:procsm-{id_shoulder}-{id_blade}{id_version}{id_locus}', interpolated=True, partial_match=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:ProcessedSample', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'AnalyticalSample': ClassDefinition(name='AnalyticalSample', id_prefixes=[], definition_uri='https://w3id.org/nmdc/AnalyticalSample', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title='Analytical Sample', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='MaterialEntity', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['name', 'description', 'alternative_identifiers', 'AnalyticalSample_id'], slot_usage={'id': SlotDefinition(name='id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=PatternExpression(syntax='{id_nmdc_prefix}:ansm-{id_shoulder}-{id_blade}{id_version}{id_locus}', interpolated=True, partial_match=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:AnalyticalSample', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'Site': ClassDefinition(name='Site', id_prefixes=[], definition_uri='https://w3id.org/nmdc/Site', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title='Site', deprecated=None, todos=[], notes=[], comments=['BCO sample collection site ?'], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='MaterialEntity', abstract=True, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['name', 'description', 'alternative_identifiers', 'Site_id'], slot_usage={'id': SlotDefinition(name='id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=PatternExpression(syntax='{id_nmdc_prefix}:site-{id_shoulder}-{id_blade}{id_version}{id_locus}', interpolated=True, partial_match=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:Site', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'PlannedProcess': ClassDefinition(name='PlannedProcess', id_prefixes=[], definition_uri='https://w3id.org/nmdc/PlannedProcess', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title='Planned Process', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=['OBI:0000011'], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='NamedThing', abstract=True, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['id', 'name', 'description', 'alternative_identifiers', 'has_input', 'has_output', 'protocol_link', 'start_date', 'end_date'], slot_usage={}, attributes={}, class_uri='OBI:0000011', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'OntologyClass': ClassDefinition(name='OntologyClass', id_prefixes=[], definition_uri='https://w3id.org/nmdc/OntologyClass', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[\"The identifiers for terms from external ontologies can't have their ids constrained to the nmdc namespace\"], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='NamedThing', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['id', 'name', 'description', 'alternative_identifiers'], slot_usage={}, attributes={}, class_uri='nmdc:OntologyClass', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'EnvironmentalMaterialTerm': ClassDefinition(name='EnvironmentalMaterialTerm', id_prefixes=[], definition_uri='https://w3id.org/nmdc/EnvironmentalMaterialTerm', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='OntologyClass', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['id', 'name', 'description', 'alternative_identifiers'], slot_usage={}, attributes={}, class_uri='nmdc:EnvironmentalMaterialTerm', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'AttributeValue': ClassDefinition(name='AttributeValue', id_prefixes=[], definition_uri='https://w3id.org/nmdc/AttributeValue', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='The value for any value of a attribute for a sample. This object can hold both the un-normalized atomic value and the structured value', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['has_raw_value', 'was_generated_by', 'AttributeValue_type'], slot_usage={'type': SlotDefinition(name='type', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='An optional string that specified the type of object.', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:AttributeValue', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'InstrumentValue': ClassDefinition(name='InstrumentValue', id_prefixes=[], definition_uri='https://w3id.org/nmdc/InstrumentValue', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='AttributeValue', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['has_raw_value', 'was_generated_by', 'AttributeValue_type', 'has_unit', 'has_numeric_value', 'instrument_name'], slot_usage={}, attributes={}, class_uri='nmdc:InstrumentValue', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'QuantityValue': ClassDefinition(name='QuantityValue', id_prefixes=[], definition_uri='https://w3id.org/nmdc/QuantityValue', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A simple quantity, e.g. 2cm', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=['schema:QuantityValue'], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='AttributeValue', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['was_generated_by', 'AttributeValue_type', 'QuantityValue_has_unit', 'QuantityValue_has_numeric_value', 'has_minimum_numeric_value', 'has_maximum_numeric_value', 'QuantityValue_has_raw_value'], slot_usage={'has_raw_value': SlotDefinition(name='has_raw_value', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='Unnormalized atomic string representation, should in syntax {number} {unit}', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'has_unit': SlotDefinition(name='has_unit', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='The unit of the quantity', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'has_numeric_value': SlotDefinition(name='has_numeric_value', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='The number part of the quantity', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='double', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:QuantityValue', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'ImageValue': ClassDefinition(name='ImageValue', id_prefixes=[], definition_uri='https://w3id.org/nmdc/ImageValue', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='An attribute value representing an image.', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='AttributeValue', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['has_raw_value', 'was_generated_by', 'AttributeValue_type', 'url', 'description', 'display_order'], slot_usage={}, attributes={}, class_uri='nmdc:ImageValue', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'PersonValue': ClassDefinition(name='PersonValue', id_prefixes=[], definition_uri='https://w3id.org/nmdc/PersonValue', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='An attribute value representing a person', alt_descriptions={}, title=None, deprecated=None, todos=['add additional fields e.g for institution', 'deprecate \"has_raw_value\" in favor of \"name\"'], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='AttributeValue', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['was_generated_by', 'AttributeValue_type', 'PersonValue_orcid', 'profile_image_url', 'PersonValue_email', 'PersonValue_name', 'websites', 'PersonValue_has_raw_value'], slot_usage={'orcid': SlotDefinition(name='orcid', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={'display_hint': Annotation(tag='display_hint', value='Open Researcher and Contributor ID for this person. See https://orcid.org', extensions={}, annotations={})}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'email': SlotDefinition(name='email', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={'display_hint': Annotation(tag='display_hint', value='Email address for this person.', extensions={}, annotations={})}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'has_raw_value': SlotDefinition(name='has_raw_value', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='The full name of the Investigator in format FIRST LAST.', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=['May eventually be deprecated in favor of \"name\".'], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'name': SlotDefinition(name='name', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={'display_hint': Annotation(tag='display_hint', value='First name, middle initial, and last name of this person.', extensions={}, annotations={})}, description='The full name of the Investigator. It should follow the format FIRST [MIDDLE NAME| MIDDLE INITIAL] LAST, where MIDDLE NAME| MIDDLE INITIAL is optional.', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:PersonValue', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'MagBin': ClassDefinition(name='MagBin', id_prefixes=[], definition_uri='https://w3id.org/nmdc/MagBin', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['bin_name', 'bin_quality', 'completeness', 'contamination', 'gene_count', 'gtdbtk_class', 'gtdbtk_domain', 'gtdbtk_family', 'gtdbtk_genus', 'gtdbtk_order', 'gtdbtk_phylum', 'gtdbtk_species', 'members_id', 'num_16s', 'num_23s', 'num_5s', 'num_t_rna', 'number_of_contig', 'total_bases', 'type'], slot_usage={}, attributes={}, class_uri='nmdc:MagBin', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'Instrument': ClassDefinition(name='Instrument', id_prefixes=[], definition_uri='https://w3id.org/nmdc/Instrument', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A material entity that is designed to perform a function in a scientific investigation, but is not a reagent[OBI].', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=['device'], structured_aliases={}, mappings=[], exact_mappings=['OBI:0000485'], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='NamedThing', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['name', 'description', 'alternative_identifiers', 'Instrument_id'], slot_usage={'id': SlotDefinition(name='id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=PatternExpression(syntax='{id_nmdc_prefix}:inst-{id_shoulder}-{id_blade}{id_version}{id_locus}', interpolated=True, partial_match=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:Instrument', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'MetaboliteQuantification': ClassDefinition(name='MetaboliteQuantification', id_prefixes=[], definition_uri='https://w3id.org/nmdc/MetaboliteQuantification', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='This is used to link a metabolomics analysis workflow to a specific metabolite', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['alternative_identifiers', 'highest_similarity_score', 'metabolite_quantified'], slot_usage={}, attributes={}, class_uri='nmdc:MetaboliteQuantification', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'PeptideQuantification': ClassDefinition(name='PeptideQuantification', id_prefixes=[], definition_uri='https://w3id.org/nmdc/PeptideQuantification', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='This is used to link a metaproteomics analysis workflow to a specific peptide sequence and related information', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['all_proteins', 'best_protein', 'min_q_value', 'peptide_sequence', 'peptide_spectral_count', 'peptide_sum_masic_abundance'], slot_usage={}, attributes={}, class_uri='nmdc:PeptideQuantification', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'ProteinQuantification': ClassDefinition(name='ProteinQuantification', id_prefixes=[], definition_uri='https://w3id.org/nmdc/ProteinQuantification', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='This is used to link a metaproteomics analysis workflow to a specific protein', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['ProteinQuantification_best_protein', 'ProteinQuantification_all_proteins', 'ProteinQuantification_peptide_sequence_count', 'ProteinQuantification_protein_spectral_count', 'ProteinQuantification_protein_sum_masic_abundance'], slot_usage={'best_protein': SlotDefinition(name='best_protein', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='the specific protein identifier most correctly grouped to its associated peptide sequences', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='GeneProduct', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'all_proteins': SlotDefinition(name='all_proteins', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='the grouped list of protein identifiers associated with the peptide sequences that were grouped to a best protein', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=True, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='GeneProduct', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'peptide_sequence_count': SlotDefinition(name='peptide_sequence_count', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='count of peptide sequences grouped to the best_protein', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='integer', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'protein_spectral_count': SlotDefinition(name='protein_spectral_count', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='sum of filter passing MS2 spectra associated with the best protein within a given LC-MS/MS data file', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='integer', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'protein_sum_masic_abundance': SlotDefinition(name='protein_sum_masic_abundance', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='combined MS1 extracted ion chromatograms derived from MS2 spectra associated with the best protein from a given LC-MS/MS data file using the MASIC tool', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='integer', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:ProteinQuantification', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'ChemicalEntity': ClassDefinition(name='ChemicalEntity', id_prefixes=['CAS', 'CHEBI', 'CHEMBL.COMPOUND', 'DRUGBANK', 'HMDB', 'KEGG.COMPOUND', 'MESH', 'PUBCHEM.COMPOUND'], definition_uri='https://w3id.org/nmdc/ChemicalEntity', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='An atom or molecule that can be represented with a chemical formula. Include lipids, glycans, natural products, drugs. There may be different terms for distinct acid-base forms, protonation states', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=['As with the parent OntologyClass, we will not assign an nmdc id pattern or typecode to this class.'], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core', imported_from=None, source=None, in_language=None, see_also=['https://bioconductor.org/packages/devel/data/annotation/vignettes/metaboliteIDmapping/inst/doc/metaboliteIDmapping.html'], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=['metabolite', 'chemical substance', 'chemical compound', 'chemical'], structured_aliases={}, mappings=[], exact_mappings=['biolink:ChemicalSubstance'], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='OntologyClass', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['id', 'name', 'description', 'alternative_identifiers', 'ChemicalEntity_inchi', 'ChemicalEntity_inchi_key', 'ChemicalEntity_smiles', 'ChemicalEntity_chemical_formula'], slot_usage={'inchi': SlotDefinition(name='inchi', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='string', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'inchi_key': SlotDefinition(name='inchi_key', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='string', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'smiles': SlotDefinition(name='smiles', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A string encoding of a molecular graph, no chiral or isotopic information. There are usually a large number of valid SMILES which represent a given structure. For example, CCO, OCC and C(O)C all specify the structure of ethanol.', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=True, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='string', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'chemical_formula': SlotDefinition(name='chemical_formula', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A generic grouping for molecular formulae and empirical formulae', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='string', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:ChemicalEntity', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'GeneProduct': ClassDefinition(name='GeneProduct', id_prefixes=['PR', 'UniProtKB', 'gtpo'], definition_uri='https://w3id.org/nmdc/GeneProduct', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A molecule encoded by a gene that has an evolved function', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=['we may include a more general gene product class in future to allow for ncRNA annotation'], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=['biolink:GeneProduct'], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='NamedThing', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['id', 'name', 'description', 'alternative_identifiers'], slot_usage={}, attributes={}, class_uri='nmdc:GeneProduct', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'TextValue': ClassDefinition(name='TextValue', id_prefixes=[], definition_uri='https://w3id.org/nmdc/TextValue', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A basic string value', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='AttributeValue', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['has_raw_value', 'was_generated_by', 'AttributeValue_type', 'language'], slot_usage={}, attributes={}, class_uri='nmdc:TextValue', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'UrlValue': ClassDefinition(name='UrlValue', id_prefixes=[], definition_uri='https://w3id.org/nmdc/UrlValue', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A value that is a string that conforms to URL syntax', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='AttributeValue', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['has_raw_value', 'was_generated_by', 'AttributeValue_type'], slot_usage={}, attributes={}, class_uri='nmdc:UrlValue', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'TimestampValue': ClassDefinition(name='TimestampValue', id_prefixes=[], definition_uri='https://w3id.org/nmdc/TimestampValue', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A value that is a timestamp. The range should be ISO-8601', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=['removed the following slots: year, month, day'], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='AttributeValue', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['has_raw_value', 'was_generated_by', 'AttributeValue_type'], slot_usage={}, attributes={}, class_uri='nmdc:TimestampValue', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'IntegerValue': ClassDefinition(name='IntegerValue', id_prefixes=[], definition_uri='https://w3id.org/nmdc/IntegerValue', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A value that is an integer', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='AttributeValue', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['has_raw_value', 'was_generated_by', 'AttributeValue_type', 'has_numeric_value'], slot_usage={}, attributes={}, class_uri='nmdc:IntegerValue', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'BooleanValue': ClassDefinition(name='BooleanValue', id_prefixes=[], definition_uri='https://w3id.org/nmdc/BooleanValue', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A value that is a boolean', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='AttributeValue', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['has_raw_value', 'was_generated_by', 'AttributeValue_type', 'has_boolean_value'], slot_usage={}, attributes={}, class_uri='nmdc:BooleanValue', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'ControlledTermValue': ClassDefinition(name='ControlledTermValue', id_prefixes=[], definition_uri='https://w3id.org/nmdc/ControlledTermValue', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A controlled term or class from an ontology', alt_descriptions={}, title=None, deprecated=None, todos=['add fields for ontology, branch'], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='AttributeValue', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['has_raw_value', 'was_generated_by', 'AttributeValue_type', 'term'], slot_usage={}, attributes={}, class_uri='nmdc:ControlledTermValue', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'ControlledIdentifiedTermValue': ClassDefinition(name='ControlledIdentifiedTermValue', id_prefixes=[], definition_uri='https://w3id.org/nmdc/ControlledIdentifiedTermValue', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A controlled term or class from an ontology, requiring the presence of term with an id', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=['To be used for slots like env_broad_scale'], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='ControlledTermValue', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['has_raw_value', 'was_generated_by', 'AttributeValue_type', 'ControlledIdentifiedTermValue_term'], slot_usage={'term': SlotDefinition(name='term', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:ControlledIdentifiedTermValue', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'GeolocationValue': ClassDefinition(name='GeolocationValue', id_prefixes=[], definition_uri='https://w3id.org/nmdc/GeolocationValue', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=\"A normalized value for a location on the earth's surface\", alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[\"what did 'to_str: {latitude} {longitude}' mean?\"], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=['schema:GeoCoordinates'], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='AttributeValue', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['was_generated_by', 'AttributeValue_type', 'GeolocationValue_latitude', 'GeolocationValue_longitude', 'GeolocationValue_has_raw_value'], slot_usage={'has_raw_value': SlotDefinition(name='has_raw_value', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='The raw value for a geolocation should follow {latitude} {longitude}', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'latitude': SlotDefinition(name='latitude', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'longitude': SlotDefinition(name='longitude', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:GeolocationValue', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'DissolvingActivity': ClassDefinition(name='DissolvingActivity', id_prefixes=[], definition_uri='https://w3id.org/nmdc/DissolvingActivity', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title='Dissolving activity', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=['dissolution-activity'], structured_aliases={}, mappings=['CHMO:0002773'], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['dissolution_aided_by', 'dissolution_reagent', 'dissolution_volume', 'dissolved_in', 'DissolvingActivity_material_input', 'DissolvingActivity_material_output'], slot_usage={'material_input': SlotDefinition(name='material_input', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[Example(value='somextract:6', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='MaterialSample', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'material_output': SlotDefinition(name='material_output', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[Example(value='somextract:7', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='MaterialSample', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='CHMO:0002773', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'LabDevice': ClassDefinition(name='LabDevice', id_prefixes=[], definition_uri='https://w3id.org/nmdc/LabDevice', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title='Lab device', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['device_type', 'activity_speed', 'activity_temperature', 'activity_time'], slot_usage={}, attributes={}, class_uri='nmdc:LabDevice', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'MaterialContainer': ClassDefinition(name='MaterialContainer', id_prefixes=[], definition_uri='https://w3id.org/nmdc/MaterialContainer', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title='Material container', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['container_size', 'container_type'], slot_usage={}, attributes={}, class_uri='nmdc:MaterialContainer', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'MaterialSample': ClassDefinition(name='MaterialSample', id_prefixes=[], definition_uri='https://w3id.org/nmdc/MaterialSample', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title='Material sample', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=['Material entity'], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='NamedThing', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['name', 'description', 'alternative_identifiers', 'MaterialSample_id'], slot_usage={'id': SlotDefinition(name='id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=PatternExpression(syntax='{id_nmdc_prefix}:matsm-{id_shoulder}-{id_blade}{id_version}{id_locus}', interpolated=True, partial_match=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:MaterialSample', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'MaterialSamplingActivity': ClassDefinition(name='MaterialSamplingActivity', id_prefixes=[], definition_uri='https://w3id.org/nmdc/MaterialSamplingActivity', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title='Material sampling activity', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=['weighing-activity'], structured_aliases={}, mappings=['OBI:0000744'], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['MaterialSamplingActivity_amount_collected', 'MaterialSamplingActivity_collected_into', 'MaterialSamplingActivity_material_output', 'MaterialSamplingActivity_sampling_method'], slot_usage={'amount_collected': SlotDefinition(name='amount_collected', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=['weighing-activity.weight'], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'collected_into': SlotDefinition(name='collected_into', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=['weighing-activity.contanier'], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='MaterialContainer', range_expression=None, enum_range=None, required=None, recommended=None, inlined=True, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'material_output': SlotDefinition(name='material_output', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[Example(value='somextract:6', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=['weighing-activity.id'], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='MaterialSample', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'sampling_method': SlotDefinition(name='sampling_method', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='OBI:0000744', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'ReactionActivity': ClassDefinition(name='ReactionActivity', id_prefixes=[], definition_uri='https://w3id.org/nmdc/ReactionActivity', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title='Reaction activity', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=['reaction-activity'], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['ReactionActivity_material_input', 'ReactionActivity_material_output', 'reaction_aided_by', 'reaction_temperature', 'ReactionActivity_reaction_time'], slot_usage={'material_input': SlotDefinition(name='material_input', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='MaterialSample', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'material_output': SlotDefinition(name='material_output', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='MaterialSample', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'reaction_time': SlotDefinition(name='reaction_time', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=['constrain units', 'align with activity_time'], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='QuantityValue', range_expression=None, enum_range=None, required=None, recommended=None, inlined=True, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:ReactionActivity', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'WorkflowExecutionActivity': ClassDefinition(name='WorkflowExecutionActivity', id_prefixes=[], definition_uri='https://w3id.org/nmdc/WorkflowExecutionActivity', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='Represents an instance of an execution of a particular workflow', alt_descriptions={'embl.ena': AltDescription(source='embl.ena', description='An analysis contains secondary analysis results derived from sequence reads (e.g. a genome assembly)')}, title=None, deprecated=None, todos=[], notes=[\"MAM I don't think this is a reasonable override of the global range of Agent, but commenting that line out does not, on its own, fix the conversion to SQLite\", 'inlining of was_associated_with values allows for collections (strings?) of WorkflowExecutionActivity id values'], comments=['Each instance of this (and all other) activities is a distinct run with start and stop times, potentially with different inputs and outputs'], examples=[], in_subset=['workflow subset'], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=['analysis'], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='Activity', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['name', 'used', 'WorkflowExecutionActivity_execution_resource', 'WorkflowExecutionActivity_git_url', 'WorkflowExecutionActivity_has_input', 'WorkflowExecutionActivity_has_output', 'part_of', 'WorkflowExecutionActivity_type', 'WorkflowExecutionActivity_version', 'WorkflowExecutionActivity_started_at_time', 'WorkflowExecutionActivity_ended_at_time', 'WorkflowExecutionActivity_was_informed_by', 'WorkflowExecutionActivity_id'], slot_usage={'started_at_time': SlotDefinition(name='started_at_time', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'ended_at_time': SlotDefinition(name='ended_at_time', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'git_url': SlotDefinition(name='git_url', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'has_input': SlotDefinition(name='has_input', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'has_output': SlotDefinition(name='has_output', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'was_informed_by': SlotDefinition(name='was_informed_by', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'execution_resource': SlotDefinition(name='execution_resource', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'type': SlotDefinition(name='type', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'version': SlotDefinition(name='version', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'id': SlotDefinition(name='id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=PatternExpression(syntax='{id_nmdc_prefix}:wf-{id_shoulder}-{id_blade}{id_version}{id_locus}', interpolated=True, partial_match=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:WorkflowExecutionActivity', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'MetagenomeAssembly': ClassDefinition(name='MetagenomeAssembly', id_prefixes=[], definition_uri='https://w3id.org/nmdc/MetagenomeAssembly', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A workflow execution activity that converts sequencing reads into an assembled metagenome.', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=['instances of this class may use a de novo assembly strategy in most or all cases relevant to NMDC'], examples=[], in_subset=['workflow subset'], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='WorkflowExecutionActivity', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['name', 'used', 'WorkflowExecutionActivity_execution_resource', 'WorkflowExecutionActivity_git_url', 'WorkflowExecutionActivity_has_input', 'WorkflowExecutionActivity_has_output', 'part_of', 'WorkflowExecutionActivity_version', 'WorkflowExecutionActivity_started_at_time', 'WorkflowExecutionActivity_ended_at_time', 'WorkflowExecutionActivity_was_informed_by', 'type', 'asm_score', 'scaffolds', 'scaf_logsum', 'scaf_powsum', 'scaf_max', 'scaf_bp', 'scaf_n50', 'scaf_n90', 'scaf_l50', 'scaf_l90', 'scaf_n_gt50k', 'scaf_l_gt50k', 'scaf_pct_gt50k', 'contigs', 'contig_bp', 'ctg_n50', 'ctg_l50', 'ctg_n90', 'ctg_l90', 'ctg_logsum', 'ctg_powsum', 'ctg_max', 'gap_pct', 'gc_std', 'gc_avg', 'num_input_reads', 'num_aligned_reads', 'insdc_assembly_identifiers', 'MetagenomeAssembly_id'], slot_usage={'id': SlotDefinition(name='id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=PatternExpression(syntax='{id_nmdc_prefix}:wfmgas-{id_shoulder}-{id_blade}{id_version}{id_locus}', interpolated=True, partial_match=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:MetagenomeAssembly', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'MetatranscriptomeAssembly': ClassDefinition(name='MetatranscriptomeAssembly', id_prefixes=[], definition_uri='https://w3id.org/nmdc/MetatranscriptomeAssembly', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=['workflow subset'], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='WorkflowExecutionActivity', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['name', 'used', 'WorkflowExecutionActivity_execution_resource', 'WorkflowExecutionActivity_git_url', 'WorkflowExecutionActivity_has_input', 'WorkflowExecutionActivity_has_output', 'part_of', 'WorkflowExecutionActivity_type', 'WorkflowExecutionActivity_version', 'WorkflowExecutionActivity_started_at_time', 'WorkflowExecutionActivity_ended_at_time', 'WorkflowExecutionActivity_was_informed_by', 'asm_score', 'scaffolds', 'scaf_logsum', 'scaf_powsum', 'scaf_max', 'scaf_bp', 'scaf_n50', 'scaf_n90', 'scaf_l50', 'scaf_l90', 'scaf_n_gt50k', 'scaf_l_gt50k', 'scaf_pct_gt50k', 'contigs', 'contig_bp', 'ctg_n50', 'ctg_l50', 'ctg_n90', 'ctg_l90', 'ctg_logsum', 'ctg_powsum', 'ctg_max', 'gap_pct', 'gc_std', 'gc_avg', 'num_input_reads', 'num_aligned_reads', 'insdc_assembly_identifiers', 'MetatranscriptomeAssembly_id'], slot_usage={'id': SlotDefinition(name='id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=PatternExpression(syntax='{id_nmdc_prefix}:wfmtas-{id_shoulder}-{id_blade}{id_version}{id_locus}', interpolated=True, partial_match=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:MetatranscriptomeAssembly', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'MetagenomeAnnotationActivity': ClassDefinition(name='MetagenomeAnnotationActivity', id_prefixes=[], definition_uri='https://w3id.org/nmdc/MetagenomeAnnotationActivity', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A workflow execution activity that provides functional and structural annotation of assembled metagenome contigs', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=['workflow subset'], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='WorkflowExecutionActivity', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['name', 'used', 'WorkflowExecutionActivity_execution_resource', 'WorkflowExecutionActivity_git_url', 'WorkflowExecutionActivity_has_input', 'WorkflowExecutionActivity_has_output', 'part_of', 'WorkflowExecutionActivity_version', 'WorkflowExecutionActivity_started_at_time', 'WorkflowExecutionActivity_ended_at_time', 'WorkflowExecutionActivity_was_informed_by', 'type', 'gold_analysis_project_identifiers', 'MetagenomeAnnotationActivity_id'], slot_usage={'id': SlotDefinition(name='id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=PatternExpression(syntax='{id_nmdc_prefix}:wfmgan-{id_shoulder}-{id_blade}{id_version}{id_locus}', interpolated=True, partial_match=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:MetagenomeAnnotationActivity', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'MetatranscriptomeAnnotationActivity': ClassDefinition(name='MetatranscriptomeAnnotationActivity', id_prefixes=[], definition_uri='https://w3id.org/nmdc/MetatranscriptomeAnnotationActivity', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=['workflow subset'], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='WorkflowExecutionActivity', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['name', 'used', 'WorkflowExecutionActivity_execution_resource', 'WorkflowExecutionActivity_git_url', 'WorkflowExecutionActivity_has_input', 'WorkflowExecutionActivity_has_output', 'part_of', 'WorkflowExecutionActivity_version', 'WorkflowExecutionActivity_started_at_time', 'WorkflowExecutionActivity_ended_at_time', 'WorkflowExecutionActivity_was_informed_by', 'type', 'gold_analysis_project_identifiers', 'MetatranscriptomeAnnotationActivity_id'], slot_usage={'id': SlotDefinition(name='id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=PatternExpression(syntax='{id_nmdc_prefix}:wfmtan-{id_shoulder}-{id_blade}{id_version}{id_locus}', interpolated=True, partial_match=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:MetatranscriptomeAnnotationActivity', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'MetatranscriptomeActivity': ClassDefinition(name='MetatranscriptomeActivity', id_prefixes=[], definition_uri='https://w3id.org/nmdc/MetatranscriptomeActivity', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A metatranscriptome activity that e.g. pools assembly and annotation activity.', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=['workflow subset'], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='WorkflowExecutionActivity', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['name', 'used', 'WorkflowExecutionActivity_execution_resource', 'WorkflowExecutionActivity_git_url', 'WorkflowExecutionActivity_has_input', 'WorkflowExecutionActivity_has_output', 'part_of', 'WorkflowExecutionActivity_version', 'WorkflowExecutionActivity_started_at_time', 'WorkflowExecutionActivity_ended_at_time', 'WorkflowExecutionActivity_was_informed_by', 'type', 'MetatranscriptomeActivity_id'], slot_usage={'id': SlotDefinition(name='id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=PatternExpression(syntax='{id_nmdc_prefix}:wfmt-{id_shoulder}-{id_blade}{id_version}{id_locus}', interpolated=True, partial_match=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:MetatranscriptomeActivity', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'MagsAnalysisActivity': ClassDefinition(name='MagsAnalysisActivity', id_prefixes=[], definition_uri='https://w3id.org/nmdc/MagsAnalysisActivity', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A workflow execution activity that uses computational binning tools to group assembled contigs into genomes', alt_descriptions={}, title='Metagenome-Assembled Genome analysis activity', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=['workflow subset'], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='WorkflowExecutionActivity', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['name', 'used', 'WorkflowExecutionActivity_execution_resource', 'WorkflowExecutionActivity_git_url', 'WorkflowExecutionActivity_has_input', 'WorkflowExecutionActivity_has_output', 'part_of', 'WorkflowExecutionActivity_version', 'WorkflowExecutionActivity_started_at_time', 'WorkflowExecutionActivity_ended_at_time', 'WorkflowExecutionActivity_was_informed_by', 'type', 'input_contig_num', 'binned_contig_num', 'too_short_contig_num', 'low_depth_contig_num', 'unbinned_contig_num', 'mags_list', 'MagsAnalysisActivity_id'], slot_usage={'id': SlotDefinition(name='id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=PatternExpression(syntax='{id_nmdc_prefix}:wfmag-{id_shoulder}-{id_blade}{id_version}{id_locus}', interpolated=True, partial_match=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:MagsAnalysisActivity', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'MetagenomeSequencingActivity': ClassDefinition(name='MetagenomeSequencingActivity', id_prefixes=[], definition_uri='https://w3id.org/nmdc/MetagenomeSequencingActivity', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='Initial sequencing activity that precedes any analysis. This activity has output(s) that are the raw sequencing data.', alt_descriptions={}, title='Metagenome sequencing activity', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=['workflow subset'], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='WorkflowExecutionActivity', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['name', 'used', 'WorkflowExecutionActivity_execution_resource', 'WorkflowExecutionActivity_git_url', 'WorkflowExecutionActivity_has_input', 'WorkflowExecutionActivity_has_output', 'part_of', 'WorkflowExecutionActivity_type', 'WorkflowExecutionActivity_version', 'WorkflowExecutionActivity_started_at_time', 'WorkflowExecutionActivity_ended_at_time', 'WorkflowExecutionActivity_was_informed_by', 'MetagenomeSequencingActivity_id'], slot_usage={'id': SlotDefinition(name='id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=PatternExpression(syntax='{id_nmdc_prefix}:wfmsa-{id_shoulder}-{id_blade}{id_version}{id_locus}', interpolated=True, partial_match=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:MetagenomeSequencingActivity', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'ReadQcAnalysisActivity': ClassDefinition(name='ReadQcAnalysisActivity', id_prefixes=[], definition_uri='https://w3id.org/nmdc/ReadQcAnalysisActivity', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A workflow execution activity that performs quality control on raw Illumina reads including quality trimming, artifact removal, linker trimming, adapter trimming, spike-in removal, and human/cat/dog/mouse/microbe contaminant removal', alt_descriptions={}, title='Read quality control analysis activity', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=['workflow subset'], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='WorkflowExecutionActivity', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['name', 'used', 'WorkflowExecutionActivity_execution_resource', 'WorkflowExecutionActivity_git_url', 'WorkflowExecutionActivity_has_input', 'WorkflowExecutionActivity_has_output', 'part_of', 'WorkflowExecutionActivity_started_at_time', 'WorkflowExecutionActivity_ended_at_time', 'WorkflowExecutionActivity_was_informed_by', 'type', 'input_read_count', 'input_base_count', 'output_read_count', 'output_base_count', 'input_read_bases', 'output_read_bases', 'version', 'ReadQcAnalysisActivity_id'], slot_usage={'id': SlotDefinition(name='id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=PatternExpression(syntax='{id_nmdc_prefix}:wfrqc-{id_shoulder}-{id_blade}{id_version}{id_locus}', interpolated=True, partial_match=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:ReadQcAnalysisActivity', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'ReadBasedTaxonomyAnalysisActivity': ClassDefinition(name='ReadBasedTaxonomyAnalysisActivity', id_prefixes=[], definition_uri='https://w3id.org/nmdc/ReadBasedTaxonomyAnalysisActivity', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A workflow execution activity that performs taxonomy classification using sequencing reads', alt_descriptions={}, title='Read based analysis activity', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=['workflow subset'], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='WorkflowExecutionActivity', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['name', 'used', 'WorkflowExecutionActivity_execution_resource', 'WorkflowExecutionActivity_git_url', 'WorkflowExecutionActivity_has_input', 'WorkflowExecutionActivity_has_output', 'part_of', 'WorkflowExecutionActivity_version', 'WorkflowExecutionActivity_started_at_time', 'WorkflowExecutionActivity_ended_at_time', 'WorkflowExecutionActivity_was_informed_by', 'type', 'ReadBasedTaxonomyAnalysisActivity_id'], slot_usage={'id': SlotDefinition(name='id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=PatternExpression(syntax='{id_nmdc_prefix}:wfrbt-{id_shoulder}-{id_blade}{id_version}{id_locus}', interpolated=True, partial_match=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:ReadBasedTaxonomyAnalysisActivity', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'MetabolomicsAnalysisActivity': ClassDefinition(name='MetabolomicsAnalysisActivity', id_prefixes=[], definition_uri='https://w3id.org/nmdc/MetabolomicsAnalysisActivity', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=['workflow subset'], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='WorkflowExecutionActivity', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['name', 'WorkflowExecutionActivity_execution_resource', 'WorkflowExecutionActivity_git_url', 'WorkflowExecutionActivity_has_input', 'WorkflowExecutionActivity_has_output', 'part_of', 'WorkflowExecutionActivity_type', 'WorkflowExecutionActivity_version', 'WorkflowExecutionActivity_started_at_time', 'WorkflowExecutionActivity_ended_at_time', 'WorkflowExecutionActivity_was_informed_by', 'has_calibration', 'has_metabolite_quantifications', 'MetabolomicsAnalysisActivity_used', 'MetabolomicsAnalysisActivity_id'], slot_usage={'used': SlotDefinition(name='used', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='The instrument used to collect the data used in the analysis', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='Instrument', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'id': SlotDefinition(name='id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=PatternExpression(syntax='{id_nmdc_prefix}:wfmb-{id_shoulder}-{id_blade}{id_version}{id_locus}', interpolated=True, partial_match=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:MetabolomicsAnalysisActivity', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'MetaproteomicsAnalysisActivity': ClassDefinition(name='MetaproteomicsAnalysisActivity', id_prefixes=[], definition_uri='https://w3id.org/nmdc/MetaproteomicsAnalysisActivity', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=['workflow subset'], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='WorkflowExecutionActivity', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['name', 'WorkflowExecutionActivity_execution_resource', 'WorkflowExecutionActivity_git_url', 'WorkflowExecutionActivity_has_input', 'WorkflowExecutionActivity_has_output', 'part_of', 'WorkflowExecutionActivity_type', 'WorkflowExecutionActivity_version', 'WorkflowExecutionActivity_started_at_time', 'WorkflowExecutionActivity_ended_at_time', 'WorkflowExecutionActivity_was_informed_by', 'has_peptide_quantifications', 'MetaproteomicsAnalysisActivity_used', 'MetaproteomicsAnalysisActivity_id'], slot_usage={'used': SlotDefinition(name='used', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='The instrument used to collect the data used in the analysis', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='Instrument', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'id': SlotDefinition(name='id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=PatternExpression(syntax='{id_nmdc_prefix}:wfmp-{id_shoulder}-{id_blade}{id_version}{id_locus}', interpolated=True, partial_match=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:MetaproteomicsAnalysisActivity', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'NomAnalysisActivity': ClassDefinition(name='NomAnalysisActivity', id_prefixes=[], definition_uri='https://w3id.org/nmdc/NomAnalysisActivity', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=['workflow subset'], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/workflow_execution_activity', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='WorkflowExecutionActivity', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['name', 'WorkflowExecutionActivity_execution_resource', 'WorkflowExecutionActivity_git_url', 'WorkflowExecutionActivity_has_input', 'WorkflowExecutionActivity_has_output', 'part_of', 'WorkflowExecutionActivity_type', 'WorkflowExecutionActivity_version', 'WorkflowExecutionActivity_started_at_time', 'WorkflowExecutionActivity_ended_at_time', 'WorkflowExecutionActivity_was_informed_by', 'has_calibration', 'NomAnalysisActivity_used', 'NomAnalysisActivity_id'], slot_usage={'used': SlotDefinition(name='used', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='The instrument used to collect the data used in the analysis', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='Instrument', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'id': SlotDefinition(name='id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=PatternExpression(syntax='{id_nmdc_prefix}:wfnom-{id_shoulder}-{id_blade}{id_version}{id_locus}', interpolated=True, partial_match=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:NomAnalysisActivity', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'Activity': ClassDefinition(name='Activity', id_prefixes=[], definition_uri='https://w3id.org/nmdc/Activity', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='a provence-generating activity', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/prov', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=['prov:Activity'], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['Activity_id', 'name', 'started_at_time', 'ended_at_time', 'was_informed_by', 'used'], slot_usage={'id': SlotDefinition(name='id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=PatternExpression(syntax='{id_nmdc_prefix}:act-{id_shoulder}-{id_blade}{id_version}{id_locus}', interpolated=True, partial_match=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=['remove the static pattern once the minter can generate ids that satisfy this structured_pattern and gen-linkml can expand the structured_pattern'], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:Activity', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={})}" ; - linkml:enums "{'StatusEnum': EnumDefinition(name='StatusEnum', id_prefixes=[], definition_uri='https://w3id.org/nmdc/StatusEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'pass': PermissibleValue(text='pass', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'fail': PermissibleValue(text='fail', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'ExtractionTargetEnum': EnumDefinition(name='ExtractionTargetEnum', id_prefixes=[], definition_uri='https://w3id.org/nmdc/ExtractionTargetEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'DNA': PermissibleValue(text='DNA', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'RNA': PermissibleValue(text='RNA', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'metabolite': PermissibleValue(text='metabolite', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'protein': PermissibleValue(text='protein', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'LibraryTypeEnum': EnumDefinition(name='LibraryTypeEnum', id_prefixes=[], definition_uri='https://w3id.org/nmdc/LibraryTypeEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'DNA': PermissibleValue(text='DNA', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'RNA': PermissibleValue(text='RNA', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'JgiContTypeEnum': EnumDefinition(name='JgiContTypeEnum', id_prefixes=[], definition_uri='https://w3id.org/nmdc/JgiContTypeEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'plate': PermissibleValue(text='plate', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'tube': PermissibleValue(text='tube', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'YesNoEnum': EnumDefinition(name='YesNoEnum', id_prefixes=[], definition_uri='https://w3id.org/nmdc/YesNoEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='replaces DnaDnaseEnum and DnaseRnaEnum', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'no': PermissibleValue(text='no', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'yes': PermissibleValue(text='yes', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'biosample_category_enum': EnumDefinition(name='biosample_category_enum', id_prefixes=[], definition_uri='https://w3id.org/nmdc/BiosampleCategoryEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='Funding-based, sample location-based, or experimental method-based defined categories', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=['Currently, these values can associated with biosamples via the biosample_categories slot', 'They might also be applicable to other classes', 'They are intended to enable metadata search and or filtering, for example in the NMDC data portal, https://data.microbiomedata.org/'], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=['category tag'], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'LTER': PermissibleValue(text='LTER', description=None, meaning='https://lternet.edu/', unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=\"National Science Foundation's Long Term Ecological Research Network\", deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'SIP': PermissibleValue(text='SIP', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'SFA': PermissibleValue(text='SFA', description='Science Focus Area projects funded through the Department of Energy Office of Science Biological and Environmental Research Program', meaning='https://science.osti.gov/ber/funding-opportunities/laboratory-scientific-focus-area-guidance', unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title='Department of Energy Office of Science Biological and Environmental Research Program Laboratory Science Focus Areas', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'FICUS': PermissibleValue(text='FICUS', description=None, meaning='https://jgi.doe.gov/user-programs/program-info/ficus-overview', unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title='Facilities Integrating Collaborations for User Science', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'NEON': PermissibleValue(text='NEON', description=None, meaning='https://www.neonscience.org', unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=\"National Science Foundation's National Ecological Observatory Network\", deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'file type enum': EnumDefinition(name='file type enum', id_prefixes=[], definition_uri='https://w3id.org/nmdc/FileTypeEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'Metagenome Raw Reads': PermissibleValue(text='Metagenome Raw Reads', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='^\\\\.fastq(\\\\.gz)?$', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Metagenome Raw Read 1': PermissibleValue(text='Metagenome Raw Read 1', description='Read 1 raw sequencing data, aka forward reads', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='^.+_R1\\\\.fastq(\\\\.gz)?$', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[Example(value='BMI_H25VYBGXH_19S_31WellG1_R1.fastq.gz', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Metagenome Raw Read 2': PermissibleValue(text='Metagenome Raw Read 2', description='Read 2 raw sequencing data, aka reverse reads', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='^.+_R2\\\\.fastq(\\\\.gz)?$', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[Example(value='BMI_H25VYBGXH_19S_31WellG1_R2.fastq.gz', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'FT ICR-MS Analysis Results': PermissibleValue(text='FT ICR-MS Analysis Results', description='FT ICR-MS-based molecular formula assignment results table', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'GC-MS Metabolomics Results': PermissibleValue(text='GC-MS Metabolomics Results', description='GC-MS-based metabolite assignment results table', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Metaproteomics Workflow Statistics': PermissibleValue(text='Metaproteomics Workflow Statistics', description='Aggregate workflow statistics file', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Protein Report': PermissibleValue(text='Protein Report', description='Filtered protein report file', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Peptide Report': PermissibleValue(text='Peptide Report', description='Filtered peptide report file', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Unfiltered Metaproteomics Results': PermissibleValue(text='Unfiltered Metaproteomics Results', description='MSGFjobs and MASIC output file', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Read Count and RPKM': PermissibleValue(text='Read Count and RPKM', description='Annotation read count and RPKM per feature JSON', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'QC non-rRNA R2': PermissibleValue(text='QC non-rRNA R2', description='QC removed rRNA reads (R2) fastq', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'QC non-rRNA R1': PermissibleValue(text='QC non-rRNA R1', description='QC removed rRNA reads (R1) fastq', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Metagenome Bins': PermissibleValue(text='Metagenome Bins', description='Metagenome bin contigs fasta', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Metagenome Bins Compression File': PermissibleValue(text='Metagenome Bins Compression File', description='Compressed file containing all metagenome bins and associated files', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[mag_wf_activity_id]_hqmq_bin.zip', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Metagenome Bins Info File': PermissibleValue(text='Metagenome Bins Info File', description='File containing version information on the binning workflow', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[mag_wf_activity_id]_bin.info', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'CheckM Statistics': PermissibleValue(text='CheckM Statistics', description='CheckM statistics report', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Read Based Analysis Info File': PermissibleValue(text='Read Based Analysis Info File', description='File containing reads based analysis information', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='profiler.info', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'GTDBTK Bacterial Summary': PermissibleValue(text='GTDBTK Bacterial Summary', description='GTDBTK bacterial summary', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'GTDBTK Archaeal Summary': PermissibleValue(text='GTDBTK Archaeal Summary', description='GTDBTK archaeal summary', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'GOTTCHA2 Krona Plot': PermissibleValue(text='GOTTCHA2 Krona Plot', description='GOTTCHA2 krona plot HTML file', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'GOTTCHA2 Classification Report': PermissibleValue(text='GOTTCHA2 Classification Report', description='GOTTCHA2 classification report file', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'GOTTCHA2 Report Full': PermissibleValue(text='GOTTCHA2 Report Full', description='GOTTCHA2 report file', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Kraken2 Krona Plot': PermissibleValue(text='Kraken2 Krona Plot', description='Kraken2 krona plot HTML file', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Centrifuge Krona Plot': PermissibleValue(text='Centrifuge Krona Plot', description='Centrifuge krona plot HTML file', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Centrifuge output report file': PermissibleValue(text='Centrifuge output report file', description='Centrifuge output report file', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Kraken2 Classification Report': PermissibleValue(text='Kraken2 Classification Report', description='Kraken2 output report file', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Kraken2 Taxonomic Classification': PermissibleValue(text='Kraken2 Taxonomic Classification', description='Kraken2 output read classification file', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Centrifuge Classification Report': PermissibleValue(text='Centrifuge Classification Report', description='Centrifuge output report file', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Centrifuge Taxonomic Classification': PermissibleValue(text='Centrifuge Taxonomic Classification', description='Centrifuge output read classification file', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Structural Annotation GFF': PermissibleValue(text='Structural Annotation GFF', description='GFF3 format file with structural annotations', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[GOLD-AP]_structural_annotation.gff', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Structural Annotation Stats Json': PermissibleValue(text='Structural Annotation Stats Json', description='Structural annotations stats json', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[GOLD-AP]_structural_annotation_stats.json', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Functional Annotation GFF': PermissibleValue(text='Functional Annotation GFF', description='GFF3 format file with functional annotations', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[GOLD-AP]_functional_annotation.gff', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Annotation Info File': PermissibleValue(text='Annotation Info File', description='File containing annotation info', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[GOLD-AP]_imgap.info', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Annotation Amino Acid FASTA': PermissibleValue(text='Annotation Amino Acid FASTA', description='FASTA amino acid file for annotated proteins', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[GOLD-AP]_proteins.faa', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Annotation Enzyme Commission': PermissibleValue(text='Annotation Enzyme Commission', description='Tab delimited file for EC annotation', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[GOLD-AP]_ec.tsv', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Annotation KEGG Orthology': PermissibleValue(text='Annotation KEGG Orthology', description='Tab delimited file for KO annotation', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[GOLD-AP]_ko.tsv', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Assembly Info File': PermissibleValue(text='Assembly Info File', description='File containing assembly info', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='README.txt', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Assembly Coverage BAM': PermissibleValue(text='Assembly Coverage BAM', description='Sorted bam file of reads mapping back to the final assembly', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[GOLD-AP]_pairedMapped.sam.gz', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Assembly AGP': PermissibleValue(text='Assembly AGP', description='An AGP format file that describes the assembly', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Assembly Scaffolds': PermissibleValue(text='Assembly Scaffolds', description='Final assembly scaffolds fasta', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[GOLD-AP]_assembly.contigs.fasta', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Assembly Contigs': PermissibleValue(text='Assembly Contigs', description='Final assembly contigs fasta', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='assembly.contigs.fasta', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Assembly Coverage Stats': PermissibleValue(text='Assembly Coverage Stats', description='Assembled contigs coverage information', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[GOLD-AP]_pairedMapped_sorted.bam.cov', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Contig Mapping File': PermissibleValue(text='Contig Mapping File', description='Contig mappings between contigs and scaffolds', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[GOLD-AP]_contig_names_mapping.tsv', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Error Corrected Reads': PermissibleValue(text='Error Corrected Reads', description='Error corrected reads fastq', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='input.corr.fastq.gz', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Filtered Sequencing Reads': PermissibleValue(text='Filtered Sequencing Reads', description='Reads QC result fastq (clean data)', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='/.+?(?=filter)/filter-METAGENOME.fastq.gz ', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Read Filtering Info File': PermissibleValue(text='Read Filtering Info File', description='File containing read filtering information', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[rqc_wf_activity_id]_readsQC.info', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'QC Statistics Extended': PermissibleValue(text='QC Statistics Extended', description='Extended report including methods and results for read filtering', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='/.+?(?=filter)/filtered-report.txt', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'QC Statistics': PermissibleValue(text='QC Statistics', description='Reads QC summary statistics', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[rqc_wf_activity_id]_filterStats2.txt', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'TIGRFam Annotation GFF': PermissibleValue(text='TIGRFam Annotation GFF', description='GFF3 format file with TIGRfam', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[GOLD-AP]_tigrfam.gff', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'CRT Annotation GFF': PermissibleValue(text='CRT Annotation GFF', description='GFF3 format file with CRT', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[GOLD-AP]_crt.gff', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Genemark Annotation GFF': PermissibleValue(text='Genemark Annotation GFF', description='GFF3 format file with Genemark', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[GOLD-AP]_genemark.gff', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Prodigal Annotation GFF': PermissibleValue(text='Prodigal Annotation GFF', description='GFF3 format file with Prodigal', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[GOLD-AP]_prodigal.gff', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'TRNA Annotation GFF': PermissibleValue(text='TRNA Annotation GFF', description='GFF3 format file with TRNA', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[GOLD-AP]_trna.gff', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Misc Annotation GFF': PermissibleValue(text='Misc Annotation GFF', description='GFF3 format file with Misc', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[GOLD-AP]_rfam_misc_bind_misc_feature_regulatory.gff', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'RFAM Annotation GFF': PermissibleValue(text='RFAM Annotation GFF', description='GFF3 format file with RFAM', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[GOLD-AP]_rfam.gff', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'TMRNA Annotation GFF': PermissibleValue(text='TMRNA Annotation GFF', description='GFF3 format file with TMRNA', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[GOLD-AP]_rfam_ncrna_tmrna.gff', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Crispr Terms': PermissibleValue(text='Crispr Terms', description='Crispr Terms', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[GOLD-AP]_crt.crisprs', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Product Names': PermissibleValue(text='Product Names', description='Product names file', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[GOLD-AP]_product_names.tsv', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Gene Phylogeny tsv': PermissibleValue(text='Gene Phylogeny tsv', description='Gene Phylogeny tsv', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[GOLD-AP]_gene_phylogeny.tsv', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Lineage sdb': PermissibleValue(text='Lineage sdb', description='phylogeny at the contig level', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[GOLD-AP].contigLin.assembled.sdb', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Clusters of Orthologous Groups (COG) Annotation GFF': PermissibleValue(text='Clusters of Orthologous Groups (COG) Annotation GFF', description='GFF3 format file with COGs', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[GOLD-AP]_cog.gff', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'KO_EC Annotation GFF': PermissibleValue(text='KO_EC Annotation GFF', description='GFF3 format file with KO_EC', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[GOLD-AP]_ko_ec.gff', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'CATH FunFams (Functional Families) Annotation GFF': PermissibleValue(text='CATH FunFams (Functional Families) Annotation GFF', description='GFF3 format file with CATH FunFams', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[GOLD-AP]_cath_funfam.gff', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'SUPERFam Annotation GFF': PermissibleValue(text='SUPERFam Annotation GFF', description='GFF3 format file with SUPERFam', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[GOLD-AP]_supfam.gff', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'SMART Annotation GFF': PermissibleValue(text='SMART Annotation GFF', description='GFF3 format file with SMART', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[GOLD-AP]_smart.gff', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Pfam Annotation GFF': PermissibleValue(text='Pfam Annotation GFF', description='GFF3 format file with Pfam', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[GOLD-AP]_pfam.gff', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Annotation Statistics': PermissibleValue(text='Annotation Statistics', description='Annotation statistics report', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Direct Infusion FT ICR-MS Raw Data': PermissibleValue(text='Direct Infusion FT ICR-MS Raw Data', description='Direct infusion 21 Tesla Fourier Transform ion cyclotron resonance mass spectrometry raw data acquired in broadband full scan mode', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Raw Compressed Metagenome Interleaved Paired-End Reads': PermissibleValue(text='Raw Compressed Metagenome Interleaved Paired-End Reads', description='Raw sequencing reads from a metagenome that is in interleaved paired-end format and compressed using GNU zip format.', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'credit enum': EnumDefinition(name='credit enum', id_prefixes=[], definition_uri='https://w3id.org/nmdc/CreditEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=['credit enums come from https://casrai.org/credit/'], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'Conceptualization': PermissibleValue(text='Conceptualization', description='Conceptualization', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Data curation': PermissibleValue(text='Data curation', description='Data curation', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Formal Analysis': PermissibleValue(text='Formal Analysis', description='Formal Analysis', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Funding acquisition': PermissibleValue(text='Funding acquisition', description='Funding acquisition', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Investigation': PermissibleValue(text='Investigation', description='Investigation', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Methodology': PermissibleValue(text='Methodology', description='Methodology', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Project administration': PermissibleValue(text='Project administration', description='Project administration', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Resources': PermissibleValue(text='Resources', description='Resources', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Software': PermissibleValue(text='Software', description='Software', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Supervision': PermissibleValue(text='Supervision', description='Supervision', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Validation': PermissibleValue(text='Validation', description='Validation', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Visualization': PermissibleValue(text='Visualization', description='Visualization', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Writing original draft': PermissibleValue(text='Writing original draft', description='Writing – original draft', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Writing review and editing': PermissibleValue(text='Writing review and editing', description='Writing – review & editing', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Principal Investigator': PermissibleValue(text='Principal Investigator', description='principal investigator role', meaning='OBI:0000103', unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Submitter': PermissibleValue(text='Submitter', description='the person(s) who enter study and biosample metadata into the NMDC submission portal', meaning='EFO:0001741', unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'processing_institution_enum': EnumDefinition(name='processing_institution_enum', id_prefixes=[], definition_uri='https://w3id.org/nmdc/ProcessingInstitutionEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=['This will become the range of processing_institution.omics processing', 'use ROR meanings like https://ror.org/0168r3w48 for UCSD'], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'UCSD': PermissibleValue(text='UCSD', description=None, meaning='https://ror.org/0168r3w48', unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title='University of California, San Diego', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'JGI': PermissibleValue(text='JGI', description=None, meaning='https://ror.org/04xm1d337', unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title='Joint Genome Institute', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'EMSL': PermissibleValue(text='EMSL', description=None, meaning='https://ror.org/04rc0xn13', unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title='Environmental Molecular Sciences Laboratory', deprecated=None, todos=[], notes=['replaces Environmental Molecular Science Laboratory', 'replaces Environmental Molecular Sciences Lab'], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Battelle': PermissibleValue(text='Battelle', description=None, meaning='https://ror.org/01h5tnr73', unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title='Battelle Memorial Institute', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'ANL': PermissibleValue(text='ANL', description=None, meaning='https://ror.org/05gvnxz63', unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title='Argonne National Laboratory', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'door_comp_type_enum': EnumDefinition(name='door_comp_type_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/DoorCompTypeEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'metal covered': PermissibleValue(text='metal covered', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'revolving': PermissibleValue(text='revolving', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'sliding': PermissibleValue(text='sliding', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'telescopic': PermissibleValue(text='telescopic', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'organism_count_enum': EnumDefinition(name='organism_count_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/OrganismCountEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'ATP': PermissibleValue(text='ATP', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'MPN': PermissibleValue(text='MPN', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'other': PermissibleValue(text='other', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'light_type_enum': EnumDefinition(name='light_type_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/LightTypeEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'natural light': PermissibleValue(text='natural light', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'electric light': PermissibleValue(text='electric light', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'desk lamp': PermissibleValue(text='desk lamp', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'flourescent lights': PermissibleValue(text='flourescent lights', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'none': PermissibleValue(text='none', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'freq_clean_enum': EnumDefinition(name='freq_clean_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/FreqCleanEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'Daily': PermissibleValue(text='Daily', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Weekly': PermissibleValue(text='Weekly', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Monthly': PermissibleValue(text='Monthly', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Quarterly': PermissibleValue(text='Quarterly', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Annually': PermissibleValue(text='Annually', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'other': PermissibleValue(text='other', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'substructure_type_enum': EnumDefinition(name='substructure_type_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/SubstructureTypeEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'crawlspace': PermissibleValue(text='crawlspace', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'slab on grade': PermissibleValue(text='slab on grade', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'basement': PermissibleValue(text='basement', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'depos_env_enum': EnumDefinition(name='depos_env_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/DeposEnvEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'Continental - Alluvial': PermissibleValue(text='Continental - Alluvial', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Continental - Aeolian': PermissibleValue(text='Continental - Aeolian', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Continental - Fluvial': PermissibleValue(text='Continental - Fluvial', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Continental - Lacustrine': PermissibleValue(text='Continental - Lacustrine', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Transitional - Deltaic': PermissibleValue(text='Transitional - Deltaic', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Transitional - Tidal': PermissibleValue(text='Transitional - Tidal', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Transitional - Lagoonal': PermissibleValue(text='Transitional - Lagoonal', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Transitional - Beach': PermissibleValue(text='Transitional - Beach', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Transitional - Lake': PermissibleValue(text='Transitional - Lake', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Marine - Shallow': PermissibleValue(text='Marine - Shallow', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Marine - Deep': PermissibleValue(text='Marine - Deep', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Marine - Reef': PermissibleValue(text='Marine - Reef', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Other - Evaporite': PermissibleValue(text='Other - Evaporite', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Other - Glacial': PermissibleValue(text='Other - Glacial', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Other - Volcanic': PermissibleValue(text='Other - Volcanic', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'other': PermissibleValue(text='other', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'shading_device_cond_enum': EnumDefinition(name='shading_device_cond_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/ShadingDeviceCondEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'damaged': PermissibleValue(text='damaged', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'needs repair': PermissibleValue(text='needs repair', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'new': PermissibleValue(text='new', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'rupture': PermissibleValue(text='rupture', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'visible wear': PermissibleValue(text='visible wear', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'quad_pos_enum': EnumDefinition(name='quad_pos_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/QuadPosEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'North side': PermissibleValue(text='North side', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'West side': PermissibleValue(text='West side', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'South side': PermissibleValue(text='South side', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'East side': PermissibleValue(text='East side', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'samp_floor_enum': EnumDefinition(name='samp_floor_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/SampFloorEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'1st floor': PermissibleValue(text='1st floor', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), '2nd floor': PermissibleValue(text='2nd floor', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'basement': PermissibleValue(text='basement', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'lobby': PermissibleValue(text='lobby', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'floor_cond_enum': EnumDefinition(name='floor_cond_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/FloorCondEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'new': PermissibleValue(text='new', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'visible wear': PermissibleValue(text='visible wear', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'needs repair': PermissibleValue(text='needs repair', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'damaged': PermissibleValue(text='damaged', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'rupture': PermissibleValue(text='rupture', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'specific_enum': EnumDefinition(name='specific_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/SpecificEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'operation': PermissibleValue(text='operation', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'as built': PermissibleValue(text='as built', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'construction': PermissibleValue(text='construction', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'bid': PermissibleValue(text='bid', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'design': PermissibleValue(text='design', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'photos': PermissibleValue(text='photos', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'ceil_cond_enum': EnumDefinition(name='ceil_cond_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/CeilCondEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'new': PermissibleValue(text='new', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'visible wear': PermissibleValue(text='visible wear', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'needs repair': PermissibleValue(text='needs repair', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'damaged': PermissibleValue(text='damaged', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'rupture': PermissibleValue(text='rupture', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'oxy_stat_samp_enum': EnumDefinition(name='oxy_stat_samp_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/OxyStatSampEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'aerobic': PermissibleValue(text='aerobic', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'anaerobic': PermissibleValue(text='anaerobic', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'other': PermissibleValue(text='other', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'shading_device_type_enum': EnumDefinition(name='shading_device_type_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/ShadingDeviceTypeEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'bahama shutters': PermissibleValue(text='bahama shutters', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'exterior roll blind': PermissibleValue(text='exterior roll blind', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'gambrel awning': PermissibleValue(text='gambrel awning', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'hood awning': PermissibleValue(text='hood awning', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'porchroller awning': PermissibleValue(text='porchroller awning', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'sarasota shutters': PermissibleValue(text='sarasota shutters', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'slatted aluminum': PermissibleValue(text='slatted aluminum', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'solid aluminum awning': PermissibleValue(text='solid aluminum awning', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'sun screen': PermissibleValue(text='sun screen', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'tree': PermissibleValue(text='tree', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'trellis': PermissibleValue(text='trellis', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'venetian awning': PermissibleValue(text='venetian awning', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'vis_media_enum': EnumDefinition(name='vis_media_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/VisMediaEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'photos': PermissibleValue(text='photos', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'videos': PermissibleValue(text='videos', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'commonly of the building': PermissibleValue(text='commonly of the building', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'site context (adjacent buildings, vegetation, terrain, streets)': PermissibleValue(text='site context (adjacent buildings, vegetation, terrain, streets)', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'interiors': PermissibleValue(text='interiors', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'equipment': PermissibleValue(text='equipment', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), '3D scans': PermissibleValue(text='3D scans', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'drawings_enum': EnumDefinition(name='drawings_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/DrawingsEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'operation': PermissibleValue(text='operation', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'as built': PermissibleValue(text='as built', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'construction': PermissibleValue(text='construction', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'bid': PermissibleValue(text='bid', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'design': PermissibleValue(text='design', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'building navigation map': PermissibleValue(text='building navigation map', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'diagram': PermissibleValue(text='diagram', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'sketch': PermissibleValue(text='sketch', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'window_cover_enum': EnumDefinition(name='window_cover_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/WindowCoverEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'blinds': PermissibleValue(text='blinds', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'curtains': PermissibleValue(text='curtains', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'none': PermissibleValue(text='none', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'hc_produced_enum': EnumDefinition(name='hc_produced_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/HcProducedEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'Oil': PermissibleValue(text='Oil', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Gas-Condensate': PermissibleValue(text='Gas-Condensate', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Gas': PermissibleValue(text='Gas', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Bitumen': PermissibleValue(text='Bitumen', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Coalbed Methane': PermissibleValue(text='Coalbed Methane', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'other': PermissibleValue(text='other', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'train_stop_loc_enum': EnumDefinition(name='train_stop_loc_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/TrainStopLocEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'end': PermissibleValue(text='end', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'mid': PermissibleValue(text='mid', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'downtown': PermissibleValue(text='downtown', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'build_occup_type_enum': EnumDefinition(name='build_occup_type_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/BuildOccupTypeEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'office': PermissibleValue(text='office', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'market': PermissibleValue(text='market', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'restaurant': PermissibleValue(text='restaurant', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'residence': PermissibleValue(text='residence', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'school': PermissibleValue(text='school', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'residential': PermissibleValue(text='residential', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'commercial': PermissibleValue(text='commercial', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'low rise': PermissibleValue(text='low rise', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'high rise': PermissibleValue(text='high rise', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'wood framed': PermissibleValue(text='wood framed', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'health care': PermissibleValue(text='health care', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'airport': PermissibleValue(text='airport', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'sports complex': PermissibleValue(text='sports complex', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'rel_samp_loc_enum': EnumDefinition(name='rel_samp_loc_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/RelSampLocEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'edge of car': PermissibleValue(text='edge of car', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'center of car': PermissibleValue(text='center of car', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'under a seat': PermissibleValue(text='under a seat', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'occup_document_enum': EnumDefinition(name='occup_document_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/OccupDocumentEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'automated count': PermissibleValue(text='automated count', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'estimate': PermissibleValue(text='estimate', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'manual count': PermissibleValue(text='manual count', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'videos': PermissibleValue(text='videos', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'weekday_enum': EnumDefinition(name='weekday_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/WeekdayEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'Monday': PermissibleValue(text='Monday', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Tuesday': PermissibleValue(text='Tuesday', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Wednesday': PermissibleValue(text='Wednesday', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Thursday': PermissibleValue(text='Thursday', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Friday': PermissibleValue(text='Friday', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Saturday': PermissibleValue(text='Saturday', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Sunday': PermissibleValue(text='Sunday', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'soil_horizon_enum': EnumDefinition(name='soil_horizon_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/SoilHorizonEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'O horizon': PermissibleValue(text='O horizon', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'A horizon': PermissibleValue(text='A horizon', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'E horizon': PermissibleValue(text='E horizon', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'B horizon': PermissibleValue(text='B horizon', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'C horizon': PermissibleValue(text='C horizon', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'R layer': PermissibleValue(text='R layer', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Permafrost': PermissibleValue(text='Permafrost', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'M horizon': PermissibleValue(text='M horizon', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'room_loc_enum': EnumDefinition(name='room_loc_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/RoomLocEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'corner room': PermissibleValue(text='corner room', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'interior room': PermissibleValue(text='interior room', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'exterior wall': PermissibleValue(text='exterior wall', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'indoor_surf_enum': EnumDefinition(name='indoor_surf_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/IndoorSurfEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'cabinet': PermissibleValue(text='cabinet', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'ceiling': PermissibleValue(text='ceiling', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'counter top': PermissibleValue(text='counter top', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'door': PermissibleValue(text='door', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'shelving': PermissibleValue(text='shelving', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'vent cover': PermissibleValue(text='vent cover', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'window': PermissibleValue(text='window', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'wall': PermissibleValue(text='wall', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'door_type_wood_enum': EnumDefinition(name='door_type_wood_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/DoorTypeWoodEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'bettened and ledged': PermissibleValue(text='bettened and ledged', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'battened': PermissibleValue(text='battened', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'ledged and braced': PermissibleValue(text='ledged and braced', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'ledged and framed': PermissibleValue(text='ledged and framed', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'ledged, braced and frame': PermissibleValue(text='ledged, braced and frame', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'framed and paneled': PermissibleValue(text='framed and paneled', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'glashed or sash': PermissibleValue(text='glashed or sash', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'flush': PermissibleValue(text='flush', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'louvered': PermissibleValue(text='louvered', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'wire gauged': PermissibleValue(text='wire gauged', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'floor_struc_enum': EnumDefinition(name='floor_struc_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/FloorStrucEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'balcony': PermissibleValue(text='balcony', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'floating floor': PermissibleValue(text='floating floor', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'glass floor': PermissibleValue(text='glass floor', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'raised floor': PermissibleValue(text='raised floor', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'sprung floor': PermissibleValue(text='sprung floor', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'wood-framed': PermissibleValue(text='wood-framed', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'concrete': PermissibleValue(text='concrete', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'door_type_metal_enum': EnumDefinition(name='door_type_metal_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/DoorTypeMetalEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'collapsible': PermissibleValue(text='collapsible', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'corrugated steel': PermissibleValue(text='corrugated steel', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'hollow': PermissibleValue(text='hollow', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'rolling shutters': PermissibleValue(text='rolling shutters', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'steel plate': PermissibleValue(text='steel plate', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'samp_weather_enum': EnumDefinition(name='samp_weather_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/SampWeatherEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'clear sky': PermissibleValue(text='clear sky', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'cloudy': PermissibleValue(text='cloudy', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'foggy': PermissibleValue(text='foggy', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'hail': PermissibleValue(text='hail', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'rain': PermissibleValue(text='rain', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'snow': PermissibleValue(text='snow', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'sleet': PermissibleValue(text='sleet', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'sunny': PermissibleValue(text='sunny', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'windy': PermissibleValue(text='windy', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'ext_window_orient_enum': EnumDefinition(name='ext_window_orient_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/ExtWindowOrientEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'north': PermissibleValue(text='north', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'south': PermissibleValue(text='south', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'east': PermissibleValue(text='east', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'west': PermissibleValue(text='west', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'northeast': PermissibleValue(text='northeast', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'southeast': PermissibleValue(text='southeast', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'southwest': PermissibleValue(text='southwest', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'northwest': PermissibleValue(text='northwest', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'sediment_type_enum': EnumDefinition(name='sediment_type_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/SedimentTypeEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'biogenous': PermissibleValue(text='biogenous', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'cosmogenous': PermissibleValue(text='cosmogenous', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'hydrogenous': PermissibleValue(text='hydrogenous', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'lithogenous': PermissibleValue(text='lithogenous', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'room_condt_enum': EnumDefinition(name='room_condt_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/RoomCondtEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'new': PermissibleValue(text='new', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'visible wear': PermissibleValue(text='visible wear', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'needs repair': PermissibleValue(text='needs repair', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'damaged': PermissibleValue(text='damaged', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'rupture': PermissibleValue(text='rupture', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'visible signs of mold/mildew': PermissibleValue(text='visible signs of mold/mildew', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'sr_dep_env_enum': EnumDefinition(name='sr_dep_env_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/SrDepEnvEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'Lacustine': PermissibleValue(text='Lacustine', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Fluvioldeltaic': PermissibleValue(text='Fluvioldeltaic', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Fluviomarine': PermissibleValue(text='Fluviomarine', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Marine': PermissibleValue(text='Marine', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'other': PermissibleValue(text='other', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'wall_surf_treatment_enum': EnumDefinition(name='wall_surf_treatment_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/WallSurfTreatmentEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'painted': PermissibleValue(text='painted', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'wall paper': PermissibleValue(text='wall paper', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'no treatment': PermissibleValue(text='no treatment', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'paneling': PermissibleValue(text='paneling', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'stucco': PermissibleValue(text='stucco', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'fabric': PermissibleValue(text='fabric', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'water_feat_type_enum': EnumDefinition(name='water_feat_type_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/WaterFeatTypeEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'fountain': PermissibleValue(text='fountain', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'pool': PermissibleValue(text='pool', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'standing feature': PermissibleValue(text='standing feature', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'stream': PermissibleValue(text='stream', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'waterfall': PermissibleValue(text='waterfall', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'window_mat_enum': EnumDefinition(name='window_mat_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/WindowMatEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'clad': PermissibleValue(text='clad', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'fiberglass': PermissibleValue(text='fiberglass', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'metal': PermissibleValue(text='metal', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'vinyl': PermissibleValue(text='vinyl', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'wood': PermissibleValue(text='wood', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'furniture_enum': EnumDefinition(name='furniture_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/FurnitureEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'cabinet': PermissibleValue(text='cabinet', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'chair': PermissibleValue(text='chair', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'desks': PermissibleValue(text='desks', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'building_setting_enum': EnumDefinition(name='building_setting_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/BuildingSettingEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'urban': PermissibleValue(text='urban', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'suburban': PermissibleValue(text='suburban', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'exurban': PermissibleValue(text='exurban', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'rural': PermissibleValue(text='rural', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'door_direct_enum': EnumDefinition(name='door_direct_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/DoorDirectEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'inward': PermissibleValue(text='inward', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'outward': PermissibleValue(text='outward', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'sideways': PermissibleValue(text='sideways', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'window_horiz_pos_enum': EnumDefinition(name='window_horiz_pos_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/WindowHorizPosEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'left': PermissibleValue(text='left', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'middle': PermissibleValue(text='middle', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'right': PermissibleValue(text='right', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'samp_dis_stage_enum': EnumDefinition(name='samp_dis_stage_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/SampDisStageEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'dissemination': PermissibleValue(text='dissemination', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'growth and reproduction': PermissibleValue(text='growth and reproduction', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'infection': PermissibleValue(text='infection', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'inoculation': PermissibleValue(text='inoculation', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'penetration': PermissibleValue(text='penetration', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'other': PermissibleValue(text='other', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'door_cond_enum': EnumDefinition(name='door_cond_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/DoorCondEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'damaged': PermissibleValue(text='damaged', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'needs repair': PermissibleValue(text='needs repair', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'new': PermissibleValue(text='new', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'rupture': PermissibleValue(text='rupture', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'visible wear': PermissibleValue(text='visible wear', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'filter_type_enum': EnumDefinition(name='filter_type_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/FilterTypeEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'particulate air filter': PermissibleValue(text='particulate air filter', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'chemical air filter': PermissibleValue(text='chemical air filter', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'low-MERV pleated media': PermissibleValue(text='low-MERV pleated media', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'HEPA': PermissibleValue(text='HEPA', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'electrostatic': PermissibleValue(text='electrostatic', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'gas-phase or ultraviolet air treatments': PermissibleValue(text='gas-phase or ultraviolet air treatments', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'window_type_enum': EnumDefinition(name='window_type_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/WindowTypeEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'single-hung sash window': PermissibleValue(text='single-hung sash window', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'horizontal sash window': PermissibleValue(text='horizontal sash window', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'fixed window': PermissibleValue(text='fixed window', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'build_docs_enum': EnumDefinition(name='build_docs_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/BuildDocsEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'building information model': PermissibleValue(text='building information model', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'commissioning report': PermissibleValue(text='commissioning report', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'complaint logs': PermissibleValue(text='complaint logs', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'contract administration': PermissibleValue(text='contract administration', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'cost estimate': PermissibleValue(text='cost estimate', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'janitorial schedules or logs': PermissibleValue(text='janitorial schedules or logs', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'maintenance plans': PermissibleValue(text='maintenance plans', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'schedule': PermissibleValue(text='schedule', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'sections': PermissibleValue(text='sections', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'shop drawings': PermissibleValue(text='shop drawings', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'submittals': PermissibleValue(text='submittals', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'ventilation system': PermissibleValue(text='ventilation system', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'windows': PermissibleValue(text='windows', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'cur_land_use_enum': EnumDefinition(name='cur_land_use_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/CurLandUseEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'badlands': PermissibleValue(text='badlands', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'cities': PermissibleValue(text='cities', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'conifers': PermissibleValue(text='conifers', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'originally': Annotation(tag='originally', value='conifers (e.g. pine,spruce,fir,cypress)', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[Example(value='cypress', description=None, object=None), Example(value='fir', description=None, object=None), Example(value='pine', description=None, object=None), Example(value='spruce', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'crop trees': PermissibleValue(text='crop trees', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'originally': Annotation(tag='originally', value='crop trees (nuts,fruit,christmas trees,nursery trees)', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[Example(value='christmas trees', description=None, object=None), Example(value='fruit', description=None, object=None), Example(value='nursery trees', description=None, object=None), Example(value='nuts', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'farmstead': PermissibleValue(text='farmstead', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'gravel': PermissibleValue(text='gravel', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'hardwoods': PermissibleValue(text='hardwoods', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'originally': Annotation(tag='originally', value='hardwoods (e.g. oak,hickory,elm,aspen)', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[Example(value='aspen', description=None, object=None), Example(value='elm', description=None, object=None), Example(value='hickory', description=None, object=None), Example(value='oak', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'hayland': PermissibleValue(text='hayland', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'horticultural plants': PermissibleValue(text='horticultural plants', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'originally': Annotation(tag='originally', value='horticultural plants (e.g. tulips)', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[Example(value='tulips', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'industrial areas': PermissibleValue(text='industrial areas', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'intermixed hardwood and conifers': PermissibleValue(text='intermixed hardwood and conifers', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'marshlands': PermissibleValue(text='marshlands', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'originally': Annotation(tag='originally', value='marshlands (grass,sedges,rushes)', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[Example(value='grass', description=None, object=None), Example(value='rushes', description=None, object=None), Example(value='sedgees', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'meadows': PermissibleValue(text='meadows', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'originally': Annotation(tag='originally', value='meadows (grasses,alfalfa,fescue,bromegrass,timothy)', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[Example(value='alfalfa', description=None, object=None), Example(value='bromegrass', description=None, object=None), Example(value='fescue', description=None, object=None), Example(value='grasses', description=None, object=None), Example(value='timothy', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'mines/quarries': PermissibleValue(text='mines/quarries', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'mudflats': PermissibleValue(text='mudflats', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'oil waste areas': PermissibleValue(text='oil waste areas', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'pastureland': PermissibleValue(text='pastureland', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'originally': Annotation(tag='originally', value='pastureland (grasslands used for livestock grazing)', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=['grasslands used for livestock grazing'], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'permanent snow or ice': PermissibleValue(text='permanent snow or ice', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'rainforest': PermissibleValue(text='rainforest', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'originally': Annotation(tag='originally', value='rainforest (evergreen forest receiving greater than 406 cm annual rainfall)', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=['evergreen forest receiving greater than 406 cm annual rainfall'], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'rangeland': PermissibleValue(text='rangeland', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'roads/railroads': PermissibleValue(text='roads/railroads', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'rock': PermissibleValue(text='rock', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'row crops': PermissibleValue(text='row crops', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'saline seeps': PermissibleValue(text='saline seeps', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'salt flats': PermissibleValue(text='salt flats', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'sand': PermissibleValue(text='sand', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'shrub crops': PermissibleValue(text='shrub crops', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'originally': Annotation(tag='originally', value='shrub crops (blueberries,nursery ornamentals,filberts)', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[Example(value='blueberries', description=None, object=None), Example(value='filberts', description=None, object=None), Example(value='nursery ornamentals', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'shrub land': PermissibleValue(text='shrub land', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'originally': Annotation(tag='originally', value='shrub land (e.g. mesquite,sage-brush,creosote bush,shrub oak,eucalyptus)', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[Example(value='creosote bush', description=None, object=None), Example(value='eucalyptus', description=None, object=None), Example(value='mesquite', description=None, object=None), Example(value='sage-brush', description=None, object=None), Example(value='shrub oak', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'small grains': PermissibleValue(text='small grains', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'successional shrub land': PermissibleValue(text='successional shrub land', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'originally': Annotation(tag='originally', value='successional shrub land (tree saplings,hazels,sumacs,chokecherry,shrub dogwoods,blackberries)', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[Example(value='blackberries', description=None, object=None), Example(value='chokecherry', description=None, object=None), Example(value='hazels', description=None, object=None), Example(value='shrub dogwoods', description=None, object=None), Example(value='sumacs', description=None, object=None), Example(value='tree saplings', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'swamp': PermissibleValue(text='swamp', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'originally': Annotation(tag='originally', value='swamp (permanent or semi-permanent water body dominated by woody plants)', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=['permanent or semi-permanent water body dominated by woody plants'], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'tropical': PermissibleValue(text='tropical', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'originally': Annotation(tag='originally', value='tropical (e.g. mangrove,palms)', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[Example(value='mangrove', description=None, object=None), Example(value='palms', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'tundra': PermissibleValue(text='tundra', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'originally': Annotation(tag='originally', value='tundra (mosses,lichens)', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[Example(value='lichens', description=None, object=None), Example(value='mosses', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'vegetable crops': PermissibleValue(text='vegetable crops', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'vine crops': PermissibleValue(text='vine crops', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'originally': Annotation(tag='originally', value='vine crops (grapes)', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[Example(value='grapes', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'host_sex_enum': EnumDefinition(name='host_sex_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/HostSexEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'female': PermissibleValue(text='female', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'hermaphrodite': PermissibleValue(text='hermaphrodite', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'male': PermissibleValue(text='male', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'neuter': PermissibleValue(text='neuter', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'samp_collect_point_enum': EnumDefinition(name='samp_collect_point_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/SampCollectPointEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'well': PermissibleValue(text='well', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'test well': PermissibleValue(text='test well', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'drilling rig': PermissibleValue(text='drilling rig', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'wellhead': PermissibleValue(text='wellhead', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'separator': PermissibleValue(text='separator', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'storage tank': PermissibleValue(text='storage tank', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'other': PermissibleValue(text='other', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'train_line_enum': EnumDefinition(name='train_line_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/TrainLineEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'red': PermissibleValue(text='red', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'green': PermissibleValue(text='green', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'orange': PermissibleValue(text='orange', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'mech_struc_enum': EnumDefinition(name='mech_struc_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/MechStrucEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'subway': PermissibleValue(text='subway', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'coach': PermissibleValue(text='coach', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'carriage': PermissibleValue(text='carriage', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'elevator': PermissibleValue(text='elevator', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'escalator': PermissibleValue(text='escalator', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'boat': PermissibleValue(text='boat', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'train': PermissibleValue(text='train', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'car': PermissibleValue(text='car', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'bus': PermissibleValue(text='bus', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'lithology_enum': EnumDefinition(name='lithology_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/LithologyEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'Basement': PermissibleValue(text='Basement', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Chalk': PermissibleValue(text='Chalk', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Chert': PermissibleValue(text='Chert', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Coal': PermissibleValue(text='Coal', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Conglomerate': PermissibleValue(text='Conglomerate', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Diatomite': PermissibleValue(text='Diatomite', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Dolomite': PermissibleValue(text='Dolomite', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Limestone': PermissibleValue(text='Limestone', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Sandstone': PermissibleValue(text='Sandstone', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Shale': PermissibleValue(text='Shale', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Siltstone': PermissibleValue(text='Siltstone', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Volcanic': PermissibleValue(text='Volcanic', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'other': PermissibleValue(text='other', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'door_mat_enum': EnumDefinition(name='door_mat_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/DoorMatEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'aluminum': PermissibleValue(text='aluminum', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'cellular PVC': PermissibleValue(text='cellular PVC', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'engineered plastic': PermissibleValue(text='engineered plastic', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'fiberboard': PermissibleValue(text='fiberboard', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'fiberglass': PermissibleValue(text='fiberglass', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'metal': PermissibleValue(text='metal', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'thermoplastic alloy': PermissibleValue(text='thermoplastic alloy', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'vinyl': PermissibleValue(text='vinyl', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'wood': PermissibleValue(text='wood', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'wood/plastic composite': PermissibleValue(text='wood/plastic composite', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'floor_water_mold_enum': EnumDefinition(name='floor_water_mold_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/FloorWaterMoldEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'mold odor': PermissibleValue(text='mold odor', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'wet floor': PermissibleValue(text='wet floor', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'water stains': PermissibleValue(text='water stains', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'wall discoloration': PermissibleValue(text='wall discoloration', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'floor discoloration': PermissibleValue(text='floor discoloration', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'ceiling discoloration': PermissibleValue(text='ceiling discoloration', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'peeling paint or wallpaper': PermissibleValue(text='peeling paint or wallpaper', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'bulging walls': PermissibleValue(text='bulging walls', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'condensation': PermissibleValue(text='condensation', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'surf_air_cont_enum': EnumDefinition(name='surf_air_cont_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/SurfAirContEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'dust': PermissibleValue(text='dust', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'organic matter': PermissibleValue(text='organic matter', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'particulate matter': PermissibleValue(text='particulate matter', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'volatile organic compounds': PermissibleValue(text='volatile organic compounds', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'biological contaminants': PermissibleValue(text='biological contaminants', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'radon': PermissibleValue(text='radon', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'nutrients': PermissibleValue(text='nutrients', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'biocides': PermissibleValue(text='biocides', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'ceil_finish_mat_enum': EnumDefinition(name='ceil_finish_mat_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/CeilFinishMatEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'drywall': PermissibleValue(text='drywall', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'mineral fibre': PermissibleValue(text='mineral fibre', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'tiles': PermissibleValue(text='tiles', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'PVC': PermissibleValue(text='PVC', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'plasterboard': PermissibleValue(text='plasterboard', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'metal': PermissibleValue(text='metal', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'fiberglass': PermissibleValue(text='fiberglass', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'stucco': PermissibleValue(text='stucco', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'mineral wool/calcium silicate': PermissibleValue(text='mineral wool/calcium silicate', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'wood': PermissibleValue(text='wood', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'samp_md_enum': EnumDefinition(name='samp_md_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/SampMdEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'DF': PermissibleValue(text='DF', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'RT': PermissibleValue(text='RT', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'KB': PermissibleValue(text='KB', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'MSL': PermissibleValue(text='MSL', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'other': PermissibleValue(text='other', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'wall_finish_mat_enum': EnumDefinition(name='wall_finish_mat_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/WallFinishMatEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'plaster': PermissibleValue(text='plaster', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'gypsum plaster': PermissibleValue(text='gypsum plaster', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'veneer plaster': PermissibleValue(text='veneer plaster', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'gypsum board': PermissibleValue(text='gypsum board', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'tile': PermissibleValue(text='tile', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'terrazzo': PermissibleValue(text='terrazzo', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'stone facing': PermissibleValue(text='stone facing', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'acoustical treatment': PermissibleValue(text='acoustical treatment', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'wood': PermissibleValue(text='wood', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'metal': PermissibleValue(text='metal', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'masonry': PermissibleValue(text='masonry', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'floor_finish_mat_enum': EnumDefinition(name='floor_finish_mat_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/FloorFinishMatEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'tile': PermissibleValue(text='tile', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'wood strip or parquet': PermissibleValue(text='wood strip or parquet', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'carpet': PermissibleValue(text='carpet', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'rug': PermissibleValue(text='rug', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'laminate wood': PermissibleValue(text='laminate wood', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'lineoleum': PermissibleValue(text='lineoleum', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'vinyl composition tile': PermissibleValue(text='vinyl composition tile', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'sheet vinyl': PermissibleValue(text='sheet vinyl', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'stone': PermissibleValue(text='stone', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'bamboo': PermissibleValue(text='bamboo', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'cork': PermissibleValue(text='cork', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'terrazo': PermissibleValue(text='terrazo', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'concrete': PermissibleValue(text='concrete', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'none': PermissibleValue(text='none', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'sealed': PermissibleValue(text='sealed', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'clear finish': PermissibleValue(text='clear finish', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'paint': PermissibleValue(text='paint', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'none or unfinished': PermissibleValue(text='none or unfinished', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'sr_kerog_type_enum': EnumDefinition(name='sr_kerog_type_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/SrKerogTypeEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'Type I': PermissibleValue(text='Type I', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Type II': PermissibleValue(text='Type II', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Type III': PermissibleValue(text='Type III', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Type IV': PermissibleValue(text='Type IV', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'other': PermissibleValue(text='other', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'biotic_relationship_enum': EnumDefinition(name='biotic_relationship_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/BioticRelationshipEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'free living': PermissibleValue(text='free living', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'parasite': PermissibleValue(text='parasite', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'commensal': PermissibleValue(text='commensal', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'symbiont': PermissibleValue(text='symbiont', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'room_connected_enum': EnumDefinition(name='room_connected_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/RoomConnectedEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'attic': PermissibleValue(text='attic', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'bathroom': PermissibleValue(text='bathroom', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'closet': PermissibleValue(text='closet', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'conference room': PermissibleValue(text='conference room', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'elevator': PermissibleValue(text='elevator', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'examining room': PermissibleValue(text='examining room', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'hallway': PermissibleValue(text='hallway', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'kitchen': PermissibleValue(text='kitchen', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'mail room': PermissibleValue(text='mail room', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'office': PermissibleValue(text='office', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'stairwell': PermissibleValue(text='stairwell', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'growth_habit_enum': EnumDefinition(name='growth_habit_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/GrowthHabitEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'erect': PermissibleValue(text='erect', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'semi-erect': PermissibleValue(text='semi-erect', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'spreading': PermissibleValue(text='spreading', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'prostrate': PermissibleValue(text='prostrate', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'samp_subtype_enum': EnumDefinition(name='samp_subtype_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/SampSubtypeEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'oil phase': PermissibleValue(text='oil phase', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'water phase': PermissibleValue(text='water phase', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'biofilm': PermissibleValue(text='biofilm', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'not applicable': PermissibleValue(text='not applicable', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'other': PermissibleValue(text='other', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'plant_growth_med_enum': EnumDefinition(name='plant_growth_med_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/PlantGrowthMedEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'other artificial liquid medium': PermissibleValue(text='other artificial liquid medium', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'other artificial solid medium': PermissibleValue(text='other artificial solid medium', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'peat moss': PermissibleValue(text='peat moss', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'perlite': PermissibleValue(text='perlite', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'pumice': PermissibleValue(text='pumice', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'sand': PermissibleValue(text='sand', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'soil': PermissibleValue(text='soil', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'vermiculite': PermissibleValue(text='vermiculite', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'water': PermissibleValue(text='water', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'ext_wall_orient_enum': EnumDefinition(name='ext_wall_orient_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/ExtWallOrientEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'north': PermissibleValue(text='north', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'south': PermissibleValue(text='south', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'east': PermissibleValue(text='east', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'west': PermissibleValue(text='west', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'northeast': PermissibleValue(text='northeast', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'southeast': PermissibleValue(text='southeast', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'southwest': PermissibleValue(text='southwest', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'northwest': PermissibleValue(text='northwest', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'door_move_enum': EnumDefinition(name='door_move_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/DoorMoveEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'collapsible': PermissibleValue(text='collapsible', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'folding': PermissibleValue(text='folding', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'revolving': PermissibleValue(text='revolving', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'rolling shutter': PermissibleValue(text='rolling shutter', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'sliding': PermissibleValue(text='sliding', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'swinging': PermissibleValue(text='swinging', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'ceil_type_enum': EnumDefinition(name='ceil_type_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/CeilTypeEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'cathedral': PermissibleValue(text='cathedral', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'dropped': PermissibleValue(text='dropped', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'concave': PermissibleValue(text='concave', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'barrel-shaped': PermissibleValue(text='barrel-shaped', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'coffered': PermissibleValue(text='coffered', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'cove': PermissibleValue(text='cove', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'stretched': PermissibleValue(text='stretched', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'heat_cool_type_enum': EnumDefinition(name='heat_cool_type_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/HeatCoolTypeEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'radiant system': PermissibleValue(text='radiant system', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'heat pump': PermissibleValue(text='heat pump', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'forced air system': PermissibleValue(text='forced air system', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'steam forced heat': PermissibleValue(text='steam forced heat', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'wood stove': PermissibleValue(text='wood stove', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'window_vert_pos_enum': EnumDefinition(name='window_vert_pos_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/WindowVertPosEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'bottom': PermissibleValue(text='bottom', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'middle': PermissibleValue(text='middle', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'top': PermissibleValue(text='top', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'low': PermissibleValue(text='low', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'high': PermissibleValue(text='high', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'indoor_space_enum': EnumDefinition(name='indoor_space_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/IndoorSpaceEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'bedroom': PermissibleValue(text='bedroom', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'office': PermissibleValue(text='office', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'bathroom': PermissibleValue(text='bathroom', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'foyer': PermissibleValue(text='foyer', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'kitchen': PermissibleValue(text='kitchen', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'locker room': PermissibleValue(text='locker room', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'hallway': PermissibleValue(text='hallway', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'elevator': PermissibleValue(text='elevator', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'tidal_stage_enum': EnumDefinition(name='tidal_stage_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/TidalStageEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'low tide': PermissibleValue(text='low tide', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'ebb tide': PermissibleValue(text='ebb tide', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'flood tide': PermissibleValue(text='flood tide', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'high tide': PermissibleValue(text='high tide', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'wall_texture_enum': EnumDefinition(name='wall_texture_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/WallTextureEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'crows feet': PermissibleValue(text='crows feet', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'crows-foot stomp': PermissibleValue(text='crows-foot stomp', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), '': PermissibleValue(text='', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'double skip': PermissibleValue(text='double skip', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'hawk and trowel': PermissibleValue(text='hawk and trowel', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'knockdown': PermissibleValue(text='knockdown', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'popcorn': PermissibleValue(text='popcorn', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'orange peel': PermissibleValue(text='orange peel', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'rosebud stomp': PermissibleValue(text='rosebud stomp', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Santa-Fe texture': PermissibleValue(text='Santa-Fe texture', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'skip trowel': PermissibleValue(text='skip trowel', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'smooth': PermissibleValue(text='smooth', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'stomp knockdown': PermissibleValue(text='stomp knockdown', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'swirl': PermissibleValue(text='swirl', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'door_type_enum': EnumDefinition(name='door_type_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/DoorTypeEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'composite': PermissibleValue(text='composite', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'metal': PermissibleValue(text='metal', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'wooden': PermissibleValue(text='wooden', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'int_wall_cond_enum': EnumDefinition(name='int_wall_cond_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/IntWallCondEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'new': PermissibleValue(text='new', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'visible wear': PermissibleValue(text='visible wear', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'needs repair': PermissibleValue(text='needs repair', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'damaged': PermissibleValue(text='damaged', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'rupture': PermissibleValue(text='rupture', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'profile_position_enum': EnumDefinition(name='profile_position_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/ProfilePositionEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'summit': PermissibleValue(text='summit', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'shoulder': PermissibleValue(text='shoulder', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'backslope': PermissibleValue(text='backslope', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'footslope': PermissibleValue(text='footslope', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'toeslope': PermissibleValue(text='toeslope', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'arch_struc_enum': EnumDefinition(name='arch_struc_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/ArchStrucEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'building': PermissibleValue(text='building', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'shed': PermissibleValue(text='shed', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'home': PermissibleValue(text='home', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'surf_material_enum': EnumDefinition(name='surf_material_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/SurfMaterialEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'adobe': PermissibleValue(text='adobe', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'carpet': PermissibleValue(text='carpet', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'cinder blocks': PermissibleValue(text='cinder blocks', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'concrete': PermissibleValue(text='concrete', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'hay bales': PermissibleValue(text='hay bales', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'glass': PermissibleValue(text='glass', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'metal': PermissibleValue(text='metal', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'paint': PermissibleValue(text='paint', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'plastic': PermissibleValue(text='plastic', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'stainless steel': PermissibleValue(text='stainless steel', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'stone': PermissibleValue(text='stone', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'stucco': PermissibleValue(text='stucco', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'tile': PermissibleValue(text='tile', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'vinyl': PermissibleValue(text='vinyl', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'wood': PermissibleValue(text='wood', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'season_use_enum': EnumDefinition(name='season_use_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/SeasonUseEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'Spring': PermissibleValue(text='Spring', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Summer': PermissibleValue(text='Summer', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Fall': PermissibleValue(text='Fall', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Winter': PermissibleValue(text='Winter', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'drainage_class_enum': EnumDefinition(name='drainage_class_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/DrainageClassEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'very poorly': PermissibleValue(text='very poorly', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'poorly': PermissibleValue(text='poorly', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'somewhat poorly': PermissibleValue(text='somewhat poorly', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'moderately well': PermissibleValue(text='moderately well', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'well': PermissibleValue(text='well', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'excessively drained': PermissibleValue(text='excessively drained', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'wall_loc_enum': EnumDefinition(name='wall_loc_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/WallLocEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'north': PermissibleValue(text='north', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'south': PermissibleValue(text='south', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'east': PermissibleValue(text='east', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'west': PermissibleValue(text='west', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'biol_stat_enum': EnumDefinition(name='biol_stat_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/BiolStatEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'wild': PermissibleValue(text='wild', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'natural': PermissibleValue(text='natural', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'semi-natural': PermissibleValue(text='semi-natural', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'inbred line': PermissibleValue(text='inbred line', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), \"breeder's line\": PermissibleValue(text=\"breeder's line\", description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'hybrid': PermissibleValue(text='hybrid', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'clonal selection': PermissibleValue(text='clonal selection', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'mutant': PermissibleValue(text='mutant', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'sr_lithology_enum': EnumDefinition(name='sr_lithology_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/SrLithologyEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'Clastic': PermissibleValue(text='Clastic', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Carbonate': PermissibleValue(text='Carbonate', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Coal': PermissibleValue(text='Coal', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Biosilicieous': PermissibleValue(text='Biosilicieous', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'other': PermissibleValue(text='other', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'hcr_geol_age_enum': EnumDefinition(name='hcr_geol_age_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/HcrGeolAgeEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'Archean': PermissibleValue(text='Archean', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Cambrian': PermissibleValue(text='Cambrian', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Carboniferous': PermissibleValue(text='Carboniferous', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Cenozoic': PermissibleValue(text='Cenozoic', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Cretaceous': PermissibleValue(text='Cretaceous', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Devonian': PermissibleValue(text='Devonian', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Jurassic': PermissibleValue(text='Jurassic', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Mesozoic': PermissibleValue(text='Mesozoic', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Neogene': PermissibleValue(text='Neogene', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Ordovician': PermissibleValue(text='Ordovician', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Paleogene': PermissibleValue(text='Paleogene', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Paleozoic': PermissibleValue(text='Paleozoic', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Permian': PermissibleValue(text='Permian', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Precambrian': PermissibleValue(text='Precambrian', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Proterozoic': PermissibleValue(text='Proterozoic', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Silurian': PermissibleValue(text='Silurian', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Triassic': PermissibleValue(text='Triassic', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'other': PermissibleValue(text='other', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'fao_class_enum': EnumDefinition(name='fao_class_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/FaoClassEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'Acrisols': PermissibleValue(text='Acrisols', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Andosols': PermissibleValue(text='Andosols', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Arenosols': PermissibleValue(text='Arenosols', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Cambisols': PermissibleValue(text='Cambisols', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Chernozems': PermissibleValue(text='Chernozems', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Ferralsols': PermissibleValue(text='Ferralsols', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Fluvisols': PermissibleValue(text='Fluvisols', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Gleysols': PermissibleValue(text='Gleysols', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Greyzems': PermissibleValue(text='Greyzems', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Gypsisols': PermissibleValue(text='Gypsisols', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Histosols': PermissibleValue(text='Histosols', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Kastanozems': PermissibleValue(text='Kastanozems', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Lithosols': PermissibleValue(text='Lithosols', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Luvisols': PermissibleValue(text='Luvisols', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Nitosols': PermissibleValue(text='Nitosols', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Phaeozems': PermissibleValue(text='Phaeozems', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Planosols': PermissibleValue(text='Planosols', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Podzols': PermissibleValue(text='Podzols', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Podzoluvisols': PermissibleValue(text='Podzoluvisols', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Rankers': PermissibleValue(text='Rankers', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Regosols': PermissibleValue(text='Regosols', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Rendzinas': PermissibleValue(text='Rendzinas', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Solonchaks': PermissibleValue(text='Solonchaks', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Solonetz': PermissibleValue(text='Solonetz', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Vertisols': PermissibleValue(text='Vertisols', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Yermosols': PermissibleValue(text='Yermosols', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'wall_const_type_enum': EnumDefinition(name='wall_const_type_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/WallConstTypeEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'frame construction': PermissibleValue(text='frame construction', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'joisted masonry': PermissibleValue(text='joisted masonry', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'light noncombustible': PermissibleValue(text='light noncombustible', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'masonry noncombustible': PermissibleValue(text='masonry noncombustible', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'modified fire resistive': PermissibleValue(text='modified fire resistive', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'fire resistive': PermissibleValue(text='fire resistive', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'room_samp_pos_enum': EnumDefinition(name='room_samp_pos_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/RoomSampPosEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'north corner': PermissibleValue(text='north corner', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'south corner': PermissibleValue(text='south corner', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'west corner': PermissibleValue(text='west corner', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'east corner': PermissibleValue(text='east corner', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'northeast corner': PermissibleValue(text='northeast corner', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'northwest corner': PermissibleValue(text='northwest corner', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'southeast corner': PermissibleValue(text='southeast corner', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'southwest corner': PermissibleValue(text='southwest corner', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'center': PermissibleValue(text='center', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'window_cond_enum': EnumDefinition(name='window_cond_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/WindowCondEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'damaged': PermissibleValue(text='damaged', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'needs repair': PermissibleValue(text='needs repair', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'new': PermissibleValue(text='new', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'rupture': PermissibleValue(text='rupture', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'visible wear': PermissibleValue(text='visible wear', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'sr_geol_age_enum': EnumDefinition(name='sr_geol_age_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/SrGeolAgeEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'Archean': PermissibleValue(text='Archean', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Cambrian': PermissibleValue(text='Cambrian', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Carboniferous': PermissibleValue(text='Carboniferous', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Cenozoic': PermissibleValue(text='Cenozoic', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Cretaceous': PermissibleValue(text='Cretaceous', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Devonian': PermissibleValue(text='Devonian', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Jurassic': PermissibleValue(text='Jurassic', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Mesozoic': PermissibleValue(text='Mesozoic', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Neogene': PermissibleValue(text='Neogene', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Ordovician': PermissibleValue(text='Ordovician', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Paleogene': PermissibleValue(text='Paleogene', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Paleozoic': PermissibleValue(text='Paleozoic', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Permian': PermissibleValue(text='Permian', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Precambrian': PermissibleValue(text='Precambrian', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Proterozoic': PermissibleValue(text='Proterozoic', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Silurian': PermissibleValue(text='Silurian', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Triassic': PermissibleValue(text='Triassic', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'other': PermissibleValue(text='other', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'tillage_enum': EnumDefinition(name='tillage_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/TillageEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'drill': PermissibleValue(text='drill', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'cutting disc': PermissibleValue(text='cutting disc', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'ridge till': PermissibleValue(text='ridge till', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'strip tillage': PermissibleValue(text='strip tillage', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'zonal tillage': PermissibleValue(text='zonal tillage', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'chisel': PermissibleValue(text='chisel', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'tined': PermissibleValue(text='tined', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'mouldboard': PermissibleValue(text='mouldboard', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'disc plough': PermissibleValue(text='disc plough', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'heat_deliv_loc_enum': EnumDefinition(name='heat_deliv_loc_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/HeatDelivLocEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'north': PermissibleValue(text='north', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'south': PermissibleValue(text='south', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'east': PermissibleValue(text='east', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'west': PermissibleValue(text='west', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'handidness_enum': EnumDefinition(name='handidness_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/HandidnessEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'ambidexterity': PermissibleValue(text='ambidexterity', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'left handedness': PermissibleValue(text='left handedness', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'mixed-handedness': PermissibleValue(text='mixed-handedness', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'right handedness': PermissibleValue(text='right handedness', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'hcr_enum': EnumDefinition(name='hcr_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/HcrEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'Oil Reservoir': PermissibleValue(text='Oil Reservoir', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Gas Reservoir': PermissibleValue(text='Gas Reservoir', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Oil Sand': PermissibleValue(text='Oil Sand', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Coalbed': PermissibleValue(text='Coalbed', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Shale': PermissibleValue(text='Shale', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Tight Oil Reservoir': PermissibleValue(text='Tight Oil Reservoir', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Tight Gas Reservoir': PermissibleValue(text='Tight Gas Reservoir', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'other': PermissibleValue(text='other', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'window_loc_enum': EnumDefinition(name='window_loc_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/WindowLocEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'north': PermissibleValue(text='north', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'south': PermissibleValue(text='south', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'east': PermissibleValue(text='east', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'west': PermissibleValue(text='west', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'gender_restroom_enum': EnumDefinition(name='gender_restroom_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/GenderRestroomEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'all gender': PermissibleValue(text='all gender', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'female': PermissibleValue(text='female', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'gender neurtral': PermissibleValue(text='gender neurtral', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'male': PermissibleValue(text='male', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'male and female': PermissibleValue(text='male and female', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'unisex': PermissibleValue(text='unisex', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'ceil_texture_enum': EnumDefinition(name='ceil_texture_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/CeilTextureEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'crows feet': PermissibleValue(text='crows feet', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'crows-foot stomp': PermissibleValue(text='crows-foot stomp', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'double skip': PermissibleValue(text='double skip', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'hawk and trowel': PermissibleValue(text='hawk and trowel', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'knockdown': PermissibleValue(text='knockdown', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'popcorn': PermissibleValue(text='popcorn', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'orange peel': PermissibleValue(text='orange peel', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'rosebud stomp': PermissibleValue(text='rosebud stomp', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Santa-Fe texture': PermissibleValue(text='Santa-Fe texture', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'skip trowel': PermissibleValue(text='skip trowel', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'smooth': PermissibleValue(text='smooth', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'stomp knockdown': PermissibleValue(text='stomp knockdown', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'swirl': PermissibleValue(text='swirl', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'train_stat_loc_enum': EnumDefinition(name='train_stat_loc_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/TrainStatLocEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'south station above ground': PermissibleValue(text='south station above ground', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'south station underground': PermissibleValue(text='south station underground', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'south station amtrak': PermissibleValue(text='south station amtrak', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'forest hills': PermissibleValue(text='forest hills', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'riverside': PermissibleValue(text='riverside', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'plant_sex_enum': EnumDefinition(name='plant_sex_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/PlantSexEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'Androdioecious': PermissibleValue(text='Androdioecious', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Androecious': PermissibleValue(text='Androecious', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Androgynous': PermissibleValue(text='Androgynous', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Androgynomonoecious': PermissibleValue(text='Androgynomonoecious', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Andromonoecious': PermissibleValue(text='Andromonoecious', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Bisexual': PermissibleValue(text='Bisexual', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Dichogamous': PermissibleValue(text='Dichogamous', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Diclinous': PermissibleValue(text='Diclinous', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Dioecious': PermissibleValue(text='Dioecious', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Gynodioecious': PermissibleValue(text='Gynodioecious', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Gynoecious': PermissibleValue(text='Gynoecious', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Gynomonoecious': PermissibleValue(text='Gynomonoecious', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Hermaphroditic': PermissibleValue(text='Hermaphroditic', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Imperfect': PermissibleValue(text='Imperfect', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Monoclinous': PermissibleValue(text='Monoclinous', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Monoecious': PermissibleValue(text='Monoecious', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Perfect': PermissibleValue(text='Perfect', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Polygamodioecious': PermissibleValue(text='Polygamodioecious', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Polygamomonoecious': PermissibleValue(text='Polygamomonoecious', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Polygamous': PermissibleValue(text='Polygamous', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Protandrous': PermissibleValue(text='Protandrous', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Protogynous': PermissibleValue(text='Protogynous', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Subandroecious': PermissibleValue(text='Subandroecious', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Subdioecious': PermissibleValue(text='Subdioecious', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Subgynoecious': PermissibleValue(text='Subgynoecious', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Synoecious': PermissibleValue(text='Synoecious', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Trimonoecious': PermissibleValue(text='Trimonoecious', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Trioecious': PermissibleValue(text='Trioecious', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Unisexual': PermissibleValue(text='Unisexual', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'door_loc_enum': EnumDefinition(name='door_loc_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/DoorLocEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'north': PermissibleValue(text='north', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'south': PermissibleValue(text='south', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'east': PermissibleValue(text='east', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'west': PermissibleValue(text='west', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'room_type_enum': EnumDefinition(name='room_type_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/RoomTypeEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'attic': PermissibleValue(text='attic', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'bathroom': PermissibleValue(text='bathroom', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'closet': PermissibleValue(text='closet', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'conference room': PermissibleValue(text='conference room', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'elevator': PermissibleValue(text='elevator', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'examining room': PermissibleValue(text='examining room', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'hallway': PermissibleValue(text='hallway', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'kitchen': PermissibleValue(text='kitchen', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'mail room': PermissibleValue(text='mail room', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'private office': PermissibleValue(text='private office', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'open office': PermissibleValue(text='open office', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'stairwell': PermissibleValue(text='stairwell', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), ',restroom': PermissibleValue(text=',restroom', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'lobby': PermissibleValue(text='lobby', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'vestibule': PermissibleValue(text='vestibule', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'mechanical or electrical room': PermissibleValue(text='mechanical or electrical room', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'data center': PermissibleValue(text='data center', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'laboratory_wet': PermissibleValue(text='laboratory_wet', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'laboratory_dry': PermissibleValue(text='laboratory_dry', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'gymnasium': PermissibleValue(text='gymnasium', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'natatorium': PermissibleValue(text='natatorium', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'auditorium': PermissibleValue(text='auditorium', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'lockers': PermissibleValue(text='lockers', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'cafe': PermissibleValue(text='cafe', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'warehouse': PermissibleValue(text='warehouse', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'samp_capt_status_enum': EnumDefinition(name='samp_capt_status_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/SampCaptStatusEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'active surveillance in response to an outbreak': PermissibleValue(text='active surveillance in response to an outbreak', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'active surveillance not initiated by an outbreak': PermissibleValue(text='active surveillance not initiated by an outbreak', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'farm sample': PermissibleValue(text='farm sample', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'market sample': PermissibleValue(text='market sample', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'other': PermissibleValue(text='other', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'sample_type_enum': EnumDefinition(name='sample_type_enum', id_prefixes=[], definition_uri='https://w3id.org/nmdc/SampleTypeEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/emsl', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'soil': PermissibleValue(text='soil', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'water_extract_soil': PermissibleValue(text='water_extract_soil', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'dna_sample_format_enum': EnumDefinition(name='dna_sample_format_enum', id_prefixes=[], definition_uri='https://w3id.org/nmdc/DnaSampleFormatEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metagenomics', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'10 mM Tris-HCl': PermissibleValue(text='10 mM Tris-HCl', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'DNAStable': PermissibleValue(text='DNAStable', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Ethanol': PermissibleValue(text='Ethanol', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Low EDTA TE': PermissibleValue(text='Low EDTA TE', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'MDA reaction buffer': PermissibleValue(text='MDA reaction buffer', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'PBS': PermissibleValue(text='PBS', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Pellet': PermissibleValue(text='Pellet', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'RNAStable': PermissibleValue(text='RNAStable', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'TE': PermissibleValue(text='TE', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Water': PermissibleValue(text='Water', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Gentegra-DNA': PermissibleValue(text='Gentegra-DNA', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Gentegra-RNA': PermissibleValue(text='Gentegra-RNA', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'rna_sample_format_enum': EnumDefinition(name='rna_sample_format_enum', id_prefixes=[], definition_uri='https://w3id.org/nmdc/RnaSampleFormatEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/jgi_metatranscriptomics', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'10 mM Tris-HCl': PermissibleValue(text='10 mM Tris-HCl', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'DNAStable': PermissibleValue(text='DNAStable', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Ethanol': PermissibleValue(text='Ethanol', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Low EDTA TE': PermissibleValue(text='Low EDTA TE', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'MDA reaction buffer': PermissibleValue(text='MDA reaction buffer', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'PBS': PermissibleValue(text='PBS', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Pellet': PermissibleValue(text='Pellet', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'RNAStable': PermissibleValue(text='RNAStable', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'TE': PermissibleValue(text='TE', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Water': PermissibleValue(text='Water', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Gentegra-DNA': PermissibleValue(text='Gentegra-DNA', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Gentegra-RNA': PermissibleValue(text='Gentegra-RNA', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'analysis_type_enum': EnumDefinition(name='analysis_type_enum', id_prefixes=[], definition_uri='https://w3id.org/nmdc/AnalysisTypeEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/portal/sample_id', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'metabolomics': PermissibleValue(text='metabolomics', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'metagenomics': PermissibleValue(text='metagenomics', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'metaproteomics': PermissibleValue(text='metaproteomics', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'metatranscriptomics': PermissibleValue(text='metatranscriptomics', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'natural organic matter': PermissibleValue(text='natural organic matter', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'ContainerTypeEnum': EnumDefinition(name='ContainerTypeEnum', id_prefixes=[], definition_uri='https://w3id.org/nmdc/ContainerTypeEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title='Container type enumeration', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'screw_top_conical': PermissibleValue(text='screw_top_conical', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title='Screw top conical tube', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=['falcon tube'], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'DeviceTypeEnum': EnumDefinition(name='DeviceTypeEnum', id_prefixes=[], definition_uri='https://w3id.org/nmdc/DeviceTypeEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title='Shaker type enumeration', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'orbital_shaker': PermissibleValue(text='orbital_shaker', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title='Orbital shaker', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'thermomixer': PermissibleValue(text='thermomixer', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title='Thermomixer', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'SamplingMethodEnum': EnumDefinition(name='SamplingMethodEnum', id_prefixes=[], definition_uri='https://w3id.org/nmdc/SamplingMethodEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'weighing': PermissibleValue(text='weighing', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title='Weighing', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'SolventEnum': EnumDefinition(name='SolventEnum', id_prefixes=[], definition_uri='https://w3id.org/nmdc/SolventEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title='Solvent enumeration', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/sample_prep', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'deionized_water': PermissibleValue(text='deionized_water', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title='Deionized water', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=['CHEBI:15377'], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'methanol': PermissibleValue(text='methanol', description=None, meaning='CHEBI:17790', unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title='Methanol', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'chloroform': PermissibleValue(text='chloroform', description=None, meaning='CHEBI:35255', unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title='Chloroform', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[])}" ; - linkml:id "https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc" ; - linkml:imports "annotation", - "basic_slots", - "core", - "external_identifiers", - "linkml:types", - "mixs", - "portal/emsl", - "portal/jgi_metagenomics", - "portal/jgi_metatranscriptomics", - "portal/mixs_inspired", - "portal/sample_id", - "prov", - "sample_prep", - "workflow_execution_activity" ; - linkml:types "{'bytes': TypeDefinition(name='bytes', id_prefixes=[], definition_uri='https://w3id.org/nmdc/Bytes', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='An integer value that corresponds to a size in bytes', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core', imported_from=None, source=None, in_language=None, see_also=['UO:0000233'], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='int', uri='xsd:long', repr=None, union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'decimal degree': TypeDefinition(name='decimal degree', id_prefixes=[], definition_uri='https://w3id.org/nmdc/DecimalDegree', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A decimal degree expresses latitude or longitude as decimal fractions.', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core', imported_from=None, source=None, in_language=None, see_also=['https://en.wikipedia.org/wiki/Decimal_degrees'], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='float', uri='xsd:decimal', repr=None, union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'language code': TypeDefinition(name='language code', id_prefixes=[], definition_uri='https://w3id.org/nmdc/LanguageCode', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A language code conforming to ISO_639-1', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core', imported_from=None, source=None, in_language=None, see_also=['https://en.wikipedia.org/wiki/ISO_639-1'], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='str', uri='xsd:language', repr=None, union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'unit': TypeDefinition(name='unit', id_prefixes=[], definition_uri='https://w3id.org/nmdc/Unit', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/core', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=['qud:Unit', 'UO:0000000'], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='str', uri='xsd:string', repr=None, union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'external identifier': TypeDefinition(name='external identifier', id_prefixes=[], definition_uri='https://w3id.org/nmdc/ExternalIdentifier', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A CURIE representing an external identifier', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/external_identifiers', imported_from=None, source=None, in_language=None, see_also=['https://microbiomedata.github.io/nmdc-schema/identifiers.html'], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof='uriorcurie', base='URIorCURIE', uri='xsd:anyURI', repr='str', union_of=[], pattern='^[a-zA-Z0-9][a-zA-Z0-9_\\\\.]+:[a-zA-Z0-9_][a-zA-Z0-9_\\\\/\\\\.]*$', structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'string': TypeDefinition(name='string', id_prefixes=[], definition_uri='https://w3id.org/linkml/String', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A character string', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=['schema:Text'], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='str', uri='xsd:string', repr=None, union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'integer': TypeDefinition(name='integer', id_prefixes=[], definition_uri='https://w3id.org/linkml/Integer', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='An integer', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=['schema:Integer'], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='int', uri='xsd:integer', repr=None, union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'boolean': TypeDefinition(name='boolean', id_prefixes=[], definition_uri='https://w3id.org/linkml/Boolean', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A binary (true or false) value', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=['schema:Boolean'], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='Bool', uri='xsd:boolean', repr='bool', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'float': TypeDefinition(name='float', id_prefixes=[], definition_uri='https://w3id.org/linkml/Float', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A real number that conforms to the xsd:float specification', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=['schema:Float'], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='float', uri='xsd:float', repr=None, union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'double': TypeDefinition(name='double', id_prefixes=[], definition_uri='https://w3id.org/linkml/Double', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A real number that conforms to the xsd:double specification', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=['schema:Float'], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='float', uri='xsd:double', repr=None, union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'decimal': TypeDefinition(name='decimal', id_prefixes=[], definition_uri='https://w3id.org/linkml/Decimal', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A real number with arbitrary precision that conforms to the xsd:decimal specification', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=['schema:Number'], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='Decimal', uri='xsd:decimal', repr=None, union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'time': TypeDefinition(name='time', id_prefixes=[], definition_uri='https://w3id.org/linkml/Time', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A time object represents a (local) time of day, independent of any particular day', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=['URI is dateTime because OWL reasoners do not work with straight date or time'], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=['schema:Time'], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='XSDTime', uri='xsd:time', repr='str', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'date': TypeDefinition(name='date', id_prefixes=[], definition_uri='https://w3id.org/linkml/Date', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='a date (year, month and day) in an idealized calendar', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[\"URI is dateTime because OWL reasoners don't work with straight date or time\"], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=['schema:Date'], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='XSDDate', uri='xsd:date', repr='str', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'datetime': TypeDefinition(name='datetime', id_prefixes=[], definition_uri='https://w3id.org/linkml/Datetime', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='The combination of a date and time', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=['schema:DateTime'], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='XSDDateTime', uri='xsd:dateTime', repr='str', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'date_or_datetime': TypeDefinition(name='date_or_datetime', id_prefixes=[], definition_uri='https://w3id.org/linkml/DateOrDatetime', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='Either a date or a datetime', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='str', uri='linkml:DateOrDatetime', repr='str', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'uriorcurie': TypeDefinition(name='uriorcurie', id_prefixes=[], definition_uri='https://w3id.org/linkml/Uriorcurie', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='a URI or a CURIE', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='URIorCURIE', uri='xsd:anyURI', repr='str', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'curie': TypeDefinition(name='curie', id_prefixes=[], definition_uri='https://w3id.org/linkml/Curie', local_names={}, conforms_to='https://www.w3.org/TR/curie/', implements=[], extensions={}, annotations={}, description='a compact URI', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=['in RDF serializations this MUST be expanded to a URI', 'in non-RDF serializations MAY be serialized as the compact representation'], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='Curie', uri='xsd:string', repr='str', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'uri': TypeDefinition(name='uri', id_prefixes=[], definition_uri='https://w3id.org/linkml/Uri', local_names={}, conforms_to='https://www.ietf.org/rfc/rfc3987.txt', implements=[], extensions={}, annotations={}, description='a complete URI', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=['in RDF serializations a slot with range of uri is treated as a literal or type xsd:anyURI unless it is an identifier or a reference to an identifier, in which case it is translated directly to a node'], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=['schema:URL'], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='URI', uri='xsd:anyURI', repr='str', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'ncname': TypeDefinition(name='ncname', id_prefixes=[], definition_uri='https://w3id.org/linkml/Ncname', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='Prefix part of CURIE', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='NCName', uri='xsd:string', repr='str', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'objectidentifier': TypeDefinition(name='objectidentifier', id_prefixes=[], definition_uri='https://w3id.org/linkml/Objectidentifier', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A URI or CURIE that represents an object in the model.', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=['Used for inheritence and type checking'], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='ElementIdentifier', uri='shex:iri', repr='str', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'nodeidentifier': TypeDefinition(name='nodeidentifier', id_prefixes=[], definition_uri='https://w3id.org/linkml/Nodeidentifier', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A URI, CURIE or BNODE that represents a node in a model.', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='NodeIdentifier', uri='shex:nonLiteral', repr='str', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}" . - linkml:SubsetDefinition a owl:Class ; rdfs:label "subset_definition" ; linkml:attributes "{}" ; @@ -104,6 +63,9 @@ nmdc:MetatranscriptomeAnnotationActivity a owl:Class, linkml:ClassDefinition ; rdfs:label "MetatranscriptomeAnnotationActivity" ; rdfs:subClassOf [ a owl:Restriction ; + owl:allValuesFrom nmdc:ExternalIdentifier ; + owl:onProperty nmdc:gold_analysis_project_identifiers ], + [ a owl:Restriction ; owl:onClass linkml:Uriorcurie ; owl:onProperty nmdc:id ; owl:qualifiedCardinality 1 ], @@ -111,9 +73,6 @@ nmdc:MetatranscriptomeAnnotationActivity a owl:Class, owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; owl:onProperty nmdc:type ], - [ a owl:Restriction ; - owl:allValuesFrom nmdc:ExternalIdentifier ; - owl:onProperty nmdc:gold_analysis_project_identifiers ], nmdc:WorkflowExecutionActivity ; linkml:attributes "{}" ; linkml:is_a "WorkflowExecutionActivity" . @@ -124,43 +83,43 @@ nmdc:MetatranscriptomeAssembly a owl:Class, rdfs:subClassOf [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:ctg_l90 ], + owl:onProperty nmdc:gap_pct ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:num_input_reads ], + owl:onProperty nmdc:contig_bp ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:scaf_pct_gt50k ], + owl:onProperty nmdc:scaf_l90 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:scaf_n_gt50k ], + owl:onProperty nmdc:asm_score ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:scaf_powsum ], + owl:onProperty nmdc:scaf_l_gt50k ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:ctg_powsum ], + owl:onProperty nmdc:scaf_powsum ], [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:Float ; - owl:onProperty nmdc:scaf_bp ], + owl:onClass linkml:Uriorcurie ; + owl:onProperty nmdc:id ; + owl:qualifiedCardinality 1 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:insdc_assembly_identifiers ], + owl:onClass linkml:Float ; + owl:onProperty nmdc:scaf_pct_gt50k ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:gc_std ], + owl:onProperty nmdc:num_aligned_reads ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:scaf_l_gt50k ], + owl:onProperty nmdc:ctg_powsum ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; @@ -168,63 +127,63 @@ nmdc:MetatranscriptomeAssembly a owl:Class, [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:asm_score ], + owl:onProperty nmdc:scaf_n50 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:gc_avg ], + owl:onProperty nmdc:ctg_n90 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:gap_pct ], + owl:onProperty nmdc:contigs ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:ctg_l50 ], + owl:onProperty nmdc:num_input_reads ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:scaf_max ], + owl:onProperty nmdc:scaf_logsum ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:scaf_l50 ], + owl:onProperty nmdc:ctg_n50 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:num_aligned_reads ], + owl:onProperty nmdc:scaf_l50 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:scaf_logsum ], + owl:onProperty nmdc:scaf_n_gt50k ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:scaffolds ], + owl:onProperty nmdc:gc_avg ], [ a owl:Restriction ; - owl:onClass linkml:Uriorcurie ; - owl:onProperty nmdc:id ; - owl:qualifiedCardinality 1 ], + owl:maxQualifiedCardinality 1 ; + owl:onClass linkml:String ; + owl:onProperty nmdc:insdc_assembly_identifiers ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:ctg_n50 ], + owl:onProperty nmdc:scaffolds ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:scaf_n50 ], + owl:onProperty nmdc:ctg_max ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:ctg_n90 ], + owl:onProperty nmdc:ctg_l90 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:contigs ], + owl:onProperty nmdc:scaf_max ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:contig_bp ], + owl:onProperty nmdc:scaf_bp ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; @@ -232,11 +191,11 @@ nmdc:MetatranscriptomeAssembly a owl:Class, [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:ctg_max ], + owl:onProperty nmdc:ctg_l50 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:scaf_l90 ], + owl:onProperty nmdc:gc_std ], nmdc:WorkflowExecutionActivity ; linkml:attributes "{}" ; linkml:is_a "WorkflowExecutionActivity" . @@ -379,6 +338,46 @@ nmdc:mgnify_analysis_identifiers a owl:ObjectProperty, linkml:is_a "analysis_identifiers" ; linkml:mixins "mgnify_identifiers" . +nmdc:nmdc a owl:Ontology ; + rdfs:label "NMDC" ; + IAO:0000700 nmdc:Activity, + nmdc:AttributeValue, + nmdc:CreditAssociation, + nmdc:Database, + nmdc:DissolvingActivity, + nmdc:FunctionalAnnotation, + nmdc:GenomeFeature, + nmdc:LabDevice, + nmdc:MagBin, + nmdc:MaterialContainer, + nmdc:MaterialSamplingActivity, + nmdc:MetaboliteQuantification, + nmdc:NamedThing, + nmdc:PeptideQuantification, + nmdc:ProteinQuantification, + nmdc:Protocol, + nmdc:QualityControlReport, + nmdc:ReactionActivity, + nmdc:ReactionParticipant ; + linkml:classes "{'Database': ClassDefinition(name='Database', id_prefixes=[], definition_uri='https://w3id.org/nmdc/Database', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=\"An abstract holder for any set of metadata and data. It does not need to correspond to an actual managed database top level holder class. When translated to JSON-Schema this is the 'root' object. It should contain pointers to other objects of interest\", alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/nmdc', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=['NMDC metadata object'], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['library_preparation_set', 'processed_sample_set', 'extraction_set', 'activity_set', 'biosample_set', 'data_object_set', 'dissolving_activity_set', 'functional_annotation_set', 'genome_feature_set', 'mags_activity_set', 'material_sample_set', 'material_sampling_activity_set', 'metabolomics_analysis_activity_set', 'metagenome_annotation_activity_set', 'metagenome_assembly_set', 'metagenome_sequencing_activity_set', 'metaproteomics_analysis_activity_set', 'Database_metatranscriptome_activity_set', 'nom_analysis_activity_set', 'omics_processing_set', 'reaction_activity_set', 'read_qc_analysis_activity_set', 'read_based_taxonomy_analysis_activity_set', 'study_set', 'field_research_site_set', 'collecting_biosamples_from_site_set', 'Database_date_created', 'Database_etl_software_version', 'metatranscriptome_activity_set', 'pooling_set', 'extraction_set'], slot_usage={'date_created': SlotDefinition(name='date_created', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='TODO', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'etl_software_version': SlotDefinition(name='etl_software_version', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='TODO', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'metatranscriptome_activity_set': SlotDefinition(name='metatranscriptome_activity_set', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='TODO', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:Database', subclass_of=None, union_of=[], defining_slots=[], tree_root=True, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'Pooling': ClassDefinition(name='Pooling', id_prefixes=[], definition_uri='https://w3id.org/nmdc/Pooling', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/nmdc', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='PlannedProcess', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['name', 'description', 'alternative_identifiers', 'protocol_link', 'start_date', 'end_date', 'Pooling_has_input', 'Pooling_has_output', 'Pooling_id'], slot_usage={'has_input': SlotDefinition(name='has_input', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=2, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'has_output': SlotDefinition(name='has_output', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=1, maximum_cardinality=1, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'id': SlotDefinition(name='id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=PatternExpression(syntax='{id_nmdc_prefix}:poolp-{id_shoulder}-{id_blade}{id_version}{id_locus}', interpolated=True, partial_match=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:Pooling', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'Extraction': ClassDefinition(name='Extraction', id_prefixes=[], definition_uri='https://w3id.org/nmdc/Extraction', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/nmdc', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='PlannedProcess', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['name', 'description', 'alternative_identifiers', 'start_date', 'end_date', 'extraction_method', 'extraction_target', 'processing_institution', 'protocol_link', 'quality_control_report', 'sample_mass', 'Extraction_has_input', 'Extraction_has_output', 'Extraction_id'], slot_usage={'has_input': SlotDefinition(name='has_input', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'has_output': SlotDefinition(name='has_output', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'id': SlotDefinition(name='id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=PatternExpression(syntax='{id_nmdc_prefix}:extrp-{id_shoulder}-{id_blade}{id_version}{id_locus}', interpolated=True, partial_match=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:Extraction', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'Protocol': ClassDefinition(name='Protocol', id_prefixes=[], definition_uri='https://w3id.org/nmdc/Protocol', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/nmdc', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['url', 'name'], slot_usage={}, attributes={}, class_uri='nmdc:Protocol', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'QualityControlReport': ClassDefinition(name='QualityControlReport', id_prefixes=[], definition_uri='https://w3id.org/nmdc/QualityControlReport', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/nmdc', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['status', 'name'], slot_usage={}, attributes={}, class_uri='nmdc:QualityControlReport', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'LibraryPreparation': ClassDefinition(name='LibraryPreparation', id_prefixes=[], definition_uri='https://w3id.org/nmdc/LibraryPreparation', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=['OBI:0000711 specifies a DNA input (but not ONLY a DNA input)'], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/nmdc', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=['LibraryConstruction'], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=['OBI:0000711'], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='PlannedProcess', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['name', 'description', 'alternative_identifiers', 'protocol_link', 'start_date', 'end_date', 'library_preparation_kit', 'library_type', 'pcr_cycles', 'processing_institution', 'LibraryPreparation_has_input', 'LibraryPreparation_has_output', 'LibraryPreparation_id'], slot_usage={'has_input': SlotDefinition(name='has_input', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'has_output': SlotDefinition(name='has_output', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'id': SlotDefinition(name='id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=PatternExpression(syntax='{id_nmdc_prefix}:libprp-{id_shoulder}-{id_blade}{id_version}{id_locus}', interpolated=True, partial_match=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:LibraryPreparation', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'FieldResearchSite': ClassDefinition(name='FieldResearchSite', id_prefixes=[], definition_uri='https://w3id.org/nmdc/FieldResearchSite', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A site, outside of a laboratory, from which biosamples may be collected.', alt_descriptions={}, title='Field Research Site', deprecated=None, todos=[], notes=[], comments=[\"Provides grouping of biosamples at level that's more specific than belonging to the same study\", 'be very clear that this could be part of a larger site', 'In Bioscales, one might say that rhizosphere soil and bulk soil from around the same plant were obtained at the same site. In this case, the site would correspond to one tree.', \"might correspond to GOLD's identifier on a page like https://gold.jgi.doe.gov/biosample?id=Gb0305833\"], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/nmdc', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=['research plot'], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='Site', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['name', 'description', 'alternative_identifiers', 'cur_vegetation', 'elev', 'geo_loc_name', 'habitat', 'lat_lon', 'local_class', 'neon_deims_sdr_link', 'neon_eco_type', 'neon_soil_type', 'part_of', 'soil_type', 'FieldResearchSite_id'], slot_usage={'id': SlotDefinition(name='id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=PatternExpression(syntax='{id_nmdc_prefix}:frsite-{id_shoulder}-{id_blade}{id_version}{id_locus}', interpolated=True, partial_match=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:FieldResearchSite', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'CollectingBiosamplesFromSite': ClassDefinition(name='CollectingBiosamplesFromSite', id_prefixes=[], definition_uri='https://w3id.org/nmdc/CollectingBiosamplesFromSite', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title='Collecting Biosamples From Site', deprecated=None, todos=[], notes=[], comments=['this illustrates implementing a Biosample relation with a process class'], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/nmdc', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='PlannedProcess', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['name', 'description', 'alternative_identifiers', 'protocol_link', 'start_date', 'end_date', 'CollectingBiosamplesFromSite_has_input', 'CollectingBiosamplesFromSite_has_output', 'CollectingBiosamplesFromSite_id'], slot_usage={'has_input': SlotDefinition(name='has_input', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='Site', range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'has_output': SlotDefinition(name='has_output', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='Biosample', range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'id': SlotDefinition(name='id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=PatternExpression(syntax='{id_nmdc_prefix}:clsite-{id_shoulder}-{id_blade}{id_version}{id_locus}', interpolated=True, partial_match=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:CollectingBiosamplesFromSite', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'DataObject': ClassDefinition(name='DataObject', id_prefixes=[], definition_uri='https://w3id.org/nmdc/DataObject', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='An object that primarily consists of symbols that represent information. Files, records, and omics data are examples of data objects.', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=['removed previous id_prefixes value of GOLD, since we are now using pattern-based id validation'], comments=['removed id_prefixes value of GOLD, since we are now using pattern-based id validation'], examples=[], in_subset=['data object subset'], from_schema='https://w3id.org/nmdc/nmdc', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='NamedThing', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['alternative_identifiers', 'file_size_bytes', 'md5_checksum', 'data_object_type', 'compression_type', 'was_generated_by', 'url', 'type', 'DataObject_name', 'DataObject_description', 'DataObject_id'], slot_usage={'name': SlotDefinition(name='name', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'description': SlotDefinition(name='description', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'id': SlotDefinition(name='id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=PatternExpression(syntax='{id_nmdc_prefix}:dobj-{id_shoulder}-{id_blade}{id_version}{id_locus}', interpolated=True, partial_match=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:DataObject', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'Biosample': ClassDefinition(name='Biosample', id_prefixes=[], definition_uri='https://w3id.org/nmdc/Biosample', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='Biological source material which can be characterized by an experiment.', alt_descriptions={'embl.ena': AltDescription(source='embl.ena', description='A sample contains information about the sequenced source material. Samples are associated with checklists, which define the fields used to annotate the samples. Samples are always associated with a taxon.')}, title=None, deprecated=None, todos=[\"could add GOLD and EBI's biosample definitions to the alt_descriptions?\"], notes=['removed previous id_prefixes value of GOLD, since we are now using pattern-based id validation'], comments=[], examples=[], in_subset=['sample subset'], from_schema='https://w3id.org/nmdc/nmdc', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=['sample', 'material sample', 'specimen', 'biospecimen'], structured_aliases={}, mappings=[], exact_mappings=['OBI:0000747', 'NCIT:C43412', 'http://purl.obolibrary.org/obo/FBcv_0003024'], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='MaterialEntity', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['name', 'description', 'neon_biosample_identifiers', 'host_taxid', 'embargoed', 'collected_from', 'type', 'img_identifiers', 'samp_name', 'biosample_categories', 'type', 'Biosample_part_of', 'Biosample_id', 'Biosample_alternative_identifiers', 'Biosample_gold_biosample_identifiers', 'insdc_biosample_identifiers', 'emsl_biosample_identifiers', 'igsn_biosample_identifiers', 'abs_air_humidity', 'add_recov_method', 'additional_info', 'address', 'adj_room', 'aero_struc', 'agrochem_addition', 'air_PM_concen', 'air_temp', 'air_temp_regm', 'Biosample_al_sat', 'Biosample_al_sat_meth', 'alkalinity', 'alkalinity_method', 'alkyl_diethers', 'alt', 'aminopept_act', 'ammonium', 'ammonium_nitrogen', 'amount_light', 'ances_data', 'Biosample_annual_precpt', 'annual_temp', 'antibiotic_regm', 'api', 'arch_struc', 'aromatics_pc', 'asphaltenes_pc', 'atmospheric_data', 'avg_dew_point', 'avg_occup', 'avg_temp', 'bac_prod', 'bac_resp', 'bacteria_carb_prod', 'barometric_press', 'basin', 'bathroom_count', 'bedroom_count', 'benzene', 'biochem_oxygen_dem', 'biocide', 'biocide_admin_method', 'biol_stat', 'biomass', 'biotic_regm', 'biotic_relationship', 'bishomohopanol', 'blood_press_diast', 'blood_press_syst', 'bromide', 'build_docs', 'build_occup_type', 'building_setting', 'built_struc_age', 'built_struc_set', 'built_struc_type', 'calcium', 'carb_dioxide', 'carb_monoxide', 'carb_nitro_ratio', 'ceil_area', 'ceil_cond', 'ceil_finish_mat', 'ceil_struc', 'ceil_texture', 'ceil_thermal_mass', 'ceil_type', 'ceil_water_mold', 'chem_administration', 'chem_mutagen', 'chem_oxygen_dem', 'chem_treat_method', 'chem_treatment', 'chimera_check', 'chloride', 'chlorophyll', 'Biosample_climate_environment', 'collection_date', 'conduc', 'cool_syst_id', 'core field', 'crop_rotation', 'cult_root_med', 'cur_land_use', 'Biosample_cur_vegetation', 'Biosample_cur_vegetation_meth', 'date_last_rain', 'density', 'depos_env', 'depth', 'dew_point', 'diether_lipids', 'diss_carb_dioxide', 'diss_hydrogen', 'diss_inorg_carb', 'diss_inorg_nitro', 'diss_inorg_phosp', 'diss_iron', 'diss_org_carb', 'diss_org_nitro', 'diss_oxygen', 'diss_oxygen_fluid', 'dna_cont_well', 'door_comp_type', 'door_cond', 'door_direct', 'door_loc', 'door_mat', 'door_move', 'door_size', 'door_type', 'door_type_metal', 'door_type_wood', 'door_water_mold', 'down_par', 'drainage_class', 'drawings', 'ecosystem', 'ecosystem_category', 'ecosystem_subtype', 'ecosystem_type', 'efficiency_percent', 'Biosample_elev', 'elevator', 'emulsions', 'Biosample_env_broad_scale', 'Biosample_env_local_scale', 'Biosample_env_medium', 'env_package', 'environment field', 'escalator', 'ethylbenzene', 'exp_duct', 'exp_pipe', 'experimental_factor', 'ext_door', 'ext_wall_orient', 'ext_window_orient', 'Biosample_extreme_event', 'fao_class', 'fertilizer_regm', 'field', 'filter_type', 'Biosample_fire', 'fireplace_type', 'Biosample_flooding', 'floor_age', 'floor_area', 'floor_cond', 'floor_count', 'floor_finish_mat', 'floor_struc', 'floor_thermal_mass', 'floor_water_mold', 'fluor', 'freq_clean', 'freq_cook', 'fungicide_regm', 'furniture', 'Biosample_gaseous_environment', 'gaseous_substances', 'gender_restroom', 'genetic_mod', 'geo_loc_name', 'glucosidase_act', 'gravidity', 'gravity', 'growth_facil', 'growth_habit', 'growth_hormone_regm', 'hall_count', 'handidness', 'has numeric value', 'has raw value', 'has unit', 'hc_produced', 'hcr', 'hcr_fw_salinity', 'hcr_geol_age', 'hcr_pressure', 'hcr_temp', 'heat_cool_type', 'heat_deliv_loc', 'heat_sys_deliv_meth', 'heat_system_id', 'Biosample_heavy_metals', 'Biosample_heavy_metals_meth', 'height_carper_fiber', 'herbicide_regm', 'horizon_meth', 'host_age', 'host_body_habitat', 'host_body_product', 'host_body_site', 'host_body_temp', 'host_color', 'host_common_name', 'host_diet', 'host_dry_mass', 'host_family_relation', 'host_genotype', 'host_growth_cond', 'host_height', 'host_last_meal', 'host_length', 'host_life_stage', 'host_phenotype', 'host_sex', 'host_shape', 'host_subject_id', 'host_subspecf_genlin', 'host_substrate', 'host_symbiont', 'host_taxid', 'host_tot_mass', 'host_wet_mass', 'humidity', 'humidity_regm', 'indoor_space', 'indoor_surf', 'indust_eff_percent', 'inorg_particles', 'inside_lux', 'int_wall_cond', 'investigation field', 'iw_bt_date_well', 'iwf', 'last_clean', 'Biosample_lat_lon', 'lbc_thirty', 'lbceq', 'light_intensity', 'light_regm', 'light_type', 'link_addit_analys', 'link_class_info', 'link_climate_info', 'lithology', 'local_class', 'local_class_meth', 'magnesium', 'manganese', 'max_occup', 'mean_frict_vel', 'mean_peak_frict_vel', 'mech_struc', 'mechanical_damage', 'methane', 'micro_biomass_meth', 'microbial_biomass', 'mineral_nutr_regm', 'misc_param', 'n_alkanes', 'nitrate', 'nitrate_nitrogen', 'nitrite', 'nitrite_nitrogen', 'nitro', 'non_min_nutr_regm', 'nucl_acid_amp', 'nucl_acid_ext', 'nucleic acid sequence source field', 'number_pets', 'number_plants', 'number_resident', 'occup_density_samp', 'occup_document', 'occup_samp', 'org_carb', 'org_count_qpcr_info', 'org_matter', 'org_nitro', 'org_particles', 'organism_count', 'owc_tvdss', 'Biosample_oxy_stat_samp', 'oxygen', 'part_org_carb', 'part_org_nitro', 'particle_class', 'pcr_cond', 'pcr_primers', 'permeability', 'perturbation', 'pesticide_regm', 'petroleum_hydrocarb', 'ph', 'Biosample_ph_meth', 'ph_regm', 'phaeopigments', 'phosphate', 'phosplipid_fatt_acid', 'photon_flux', 'plant_growth_med', 'plant_product', 'plant_sex', 'plant_struc', 'pollutants', 'pool_dna_extracts', 'porosity', 'potassium', 'pour_point', 'pre_treatment', 'pres_animal_insect', 'pressure', 'prev_land_use_meth', 'previous_land_use', 'primary_prod', 'primary_treatment', 'prod_rate', 'prod_start_date', 'profile_position', 'quad_pos', 'radiation_regm', 'rainfall_regm', 'reactor_type', 'redox_potential', 'rel_air_humidity', 'rel_humidity_out', 'rel_samp_loc', 'reservoir', 'resins_pc', 'room_air_exch_rate', 'room_architec_elem', 'room_condt', 'room_connected', 'room_count', 'room_dim', 'room_door_dist', 'room_door_share', 'room_hallway', 'room_loc', 'room_moist_dam_hist', 'room_net_area', 'room_occup', 'room_samp_pos', 'room_type', 'room_vol', 'room_wall_share', 'room_window_count', 'root_cond', 'root_med_carbon', 'root_med_macronutr', 'root_med_micronutr', 'root_med_ph', 'root_med_regl', 'root_med_solid', 'root_med_suppl', 'salinity', 'Biosample_salinity_meth', 'salt_regm', 'samp_capt_status', 'samp_collec_device', 'samp_collec_method', 'samp_collect_point', 'samp_dis_stage', 'samp_floor', 'samp_loc_corr_rate', 'samp_mat_process', 'samp_md', 'samp_name', 'samp_preserv', 'samp_room_id', 'samp_size', 'samp_sort_meth', 'samp_store_dur', 'samp_store_loc', 'samp_store_temp', 'samp_subtype', 'samp_taxon_id', 'samp_time_out', 'samp_transport_cond', 'samp_tvdss', 'samp_type', 'samp_vol_we_dna_ext', 'samp_weather', 'samp_well_name', 'saturates_pc', 'season', 'season_environment', 'Biosample_season_precpt', 'season_temp', 'season_use', 'secondary_treatment', 'sediment_type', 'seq_meth', 'seq_quality_check', 'sequencing field', 'sewage_type', 'shad_dev_water_mold', 'shading_device_cond', 'shading_device_loc', 'shading_device_mat', 'shading_device_type', 'Biosample_sieving', 'silicate', 'size_frac', 'size_frac_low', 'size_frac_up', 'Biosample_slope_aspect', 'Biosample_slope_gradient', 'sludge_retent_time', 'sodium', 'soil_horizon', 'soil_text_measure', 'soil_texture_meth', 'soil_type', 'soil_type_meth', 'solar_irradiance', 'soluble_inorg_mat', 'soluble_org_mat', 'soluble_react_phosp', 'Biosample_source_mat_id', 'space_typ_state', 'specific', 'specific_ecosystem', 'specific_humidity', 'sr_dep_env', 'sr_geol_age', 'sr_kerog_type', 'sr_lithology', 'standing_water_regm', 'store_cond', 'substructure_type', 'sulfate', 'sulfate_fw', 'sulfide', 'surf_air_cont', 'surf_humidity', 'surf_material', 'surf_moisture', 'surf_moisture_ph', 'surf_temp', 'suspend_part_matter', 'suspend_solids', 'tan', 'target_gene', 'target_subfragment', 'temp', 'temp_out', 'tertiary_treatment', 'tidal_stage', 'tillage', 'tiss_cult_growth_med', 'toluene', 'Biosample_tot_carb', 'tot_depth_water_col', 'tot_diss_nitro', 'tot_inorg_nitro', 'tot_iron', 'tot_nitro', 'Biosample_tot_nitro_cont_meth', 'Biosample_tot_nitro_content', 'Biosample_tot_org_c_meth', 'Biosample_tot_org_carb', 'tot_part_carb', 'tot_phosp', 'tot_phosphate', 'tot_sulfur', 'train_line', 'train_stat_loc', 'train_stop_loc', 'turbidity', 'tvdss_of_hcr_press', 'tvdss_of_hcr_temp', 'typ_occup_density', 'ventilation_rate', 'ventilation_type', 'vfa', 'vfa_fw', 'vis_media', 'viscosity', 'volatile_org_comp', 'wall_area', 'wall_const_type', 'wall_finish_mat', 'wall_height', 'wall_loc', 'wall_surf_treatment', 'wall_texture', 'wall_thermal_mass', 'wall_water_mold', 'wastewater_type', 'Biosample_water_cont_soil_meth', 'Biosample_water_content', 'water_current', 'water_cut', 'water_feat_size', 'water_feat_type', 'water_prod_rate', 'water_temp_regm', 'Biosample_watering_regm', 'weekday', 'win', 'wind_direction', 'wind_speed', 'window_cond', 'window_cover', 'window_horiz_pos', 'window_loc', 'window_mat', 'window_open_freq', 'window_size', 'window_status', 'window_type', 'window_vert_pos', 'window_water_mold', 'xylene', 'zinc', 'ecosystem', 'ecosystem_category', 'ecosystem_type', 'ecosystem_subtype', 'specific_ecosystem', 'add_date', 'community', 'habitat', 'host_name', 'location', 'mod_date', 'ncbi_taxonomy_name', 'proport_woa_temperature', 'salinity_category', 'sample_collection_site', 'soluble_iron_micromol', 'subsurface_depth', 'air_temp_regm', 'biotic_regm', 'biotic_relationship', 'climate_environment', 'experimental_factor', 'gaseous_environment', 'growth_facil', 'humidity_regm', 'light_regm', 'phosphate', 'samp_collec_method', 'samp_size', 'source_mat_id', 'watering_regm', 'dna_absorb1', 'dna_absorb2', 'dna_collect_site', 'dna_concentration', 'dna_cont_type', 'dna_cont_well', 'dna_container_id', 'dna_dnase', 'dna_isolate_meth', 'dna_organisms', 'dna_project_contact', 'dna_samp_id', 'dna_sample_format', 'dna_sample_name', 'dna_seq_project', 'dna_seq_project_pi', 'dna_seq_project_name', 'dna_volume', 'proposal_dna', 'dnase_rna', 'proposal_rna', 'rna_absorb1', 'rna_absorb2', 'rna_collect_site', 'rna_concentration', 'rna_cont_type', 'rna_cont_well', 'rna_container_id', 'rna_isolate_meth', 'rna_organisms', 'rna_project_contact', 'rna_samp_id', 'rna_sample_format', 'rna_sample_name', 'rna_seq_project', 'rna_seq_project_pi', 'rna_seq_project_name', 'rna_volume', 'collection_date_inc', 'collection_time', 'collection_time_inc', 'experimental_factor_other', 'filter_method', 'isotope_exposure', 'micro_biomass_c_meth', 'micro_biomass_n_meth', 'microbial_biomass_c', 'microbial_biomass_n', 'non_microb_biomass', 'non_microb_biomass_method', 'org_nitro_method', 'other_treatment', 'start_date_inc', 'start_time_inc', 'project_id', 'replicate_number', 'sample_shipped', 'sample_type', 'technical_reps', 'analysis_type', 'sample_link', 'zinc', 'manganese', 'ammonium_nitrogen', 'nitrate_nitrogen', 'nitrite_nitrogen', 'lbc_thirty', 'lbceq'], slot_usage={'elev': SlotDefinition(name='elev', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title='elevation, meters', deprecated=None, todos=[], notes=[], comments=['All elevations must be reported in meters. Provide the numerical portion only.'], examples=[Example(value='100', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='float', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'oxy_stat_samp': SlotDefinition(name='oxy_stat_samp', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='oxy_stat_samp_enum', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'id': SlotDefinition(name='id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='An NMDC assigned unique identifier for a biosample submitted to NMDC.', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=PatternExpression(syntax='{id_nmdc_prefix}:bsm-{id_shoulder}-{id_blade}{id_version}{id_locus}', interpolated=True, partial_match=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'gold_biosample_identifiers': SlotDefinition(name='gold_biosample_identifiers', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={'display_hint': Annotation(tag='display_hint', value='Provide the GOLD biosample IDs associated with this biosample.', extensions={}, annotations={})}, description='Unique identifier for a biosample submitted to GOLD that matches the NMDC submitted biosample', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[\"This is the ID provided by GOLD that starts with 'GB'\"], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'alternative_identifiers': SlotDefinition(name='alternative_identifiers', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='Unique identifier for a biosample submitted to additional resources. Matches the entity that has been submitted to NMDC', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'lat_lon': SlotDefinition(name='lat_lon', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=\"This is currently a required field but it's not clear if this should be required for human hosts\", alt_descriptions={}, title=None, deprecated=None, todos=[], notes=['required where?'], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'env_broad_scale': SlotDefinition(name='env_broad_scale', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'env_local_scale': SlotDefinition(name='env_local_scale', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'env_medium': SlotDefinition(name='env_medium', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'part_of': SlotDefinition(name='part_of', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='Study', range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'fire': SlotDefinition(name='fire', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={'expected_value': Annotation(tag='expected_value', value='date string', extensions={}, annotations={})}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=['is \"to\" acceptable? Is there a better way to request that be written?', 'This is no longer matching the listed IRI from GSC. When NMDC has its own slots, map this to the MIxS slot'], notes=[], comments=['Provide the date the fire occurred. If extended burning occurred provide the date range.'], examples=[Example(value='1871-10-10', description=None, object=None), Example(value='1871-10-01 to 1871-10-31', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='string', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern='^[12]\\\\d{3}(?:(?:-(?:0[1-9]|1[0-2]))(?:-(?:0[1-9]|[12]\\\\d|3[01]))?)?(\\\\s+to\\\\s+[12]\\\\d{3}(?:(?:-(?:0[1-9]|1[0-2]))(?:-(?:0[1-9]|[12]\\\\d|3[01]))?)?)?$', structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'flooding': SlotDefinition(name='flooding', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={'expected_value': Annotation(tag='expected_value', value='date string', extensions={}, annotations={})}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=['is \"to\" acceptable? Is there a better way to request that be written?', 'What about if the \"day\" isn\\'t known? Is this ok?', 'This is no longer matching the listed IRI from GSC. When NMDC has its own slots, map this to the MIxS slot'], notes=[], comments=['Provide the date the flood occurred. If extended flooding occurred provide the date range.'], examples=[Example(value='1927-04-15', description=None, object=None), Example(value='1927-04 to 1927-05', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='string', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'extreme_event': SlotDefinition(name='extreme_event', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={'expected_value': Annotation(tag='expected_value', value='date, string', extensions={}, annotations={})}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=['This is no longer matching the listed IRI from GSC. When NMDC has its own slots, map this to the MIxS slot'], notes=[], comments=[], examples=[Example(value='1980-05-18, volcanic eruption', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='string', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'slope_aspect': SlotDefinition(name='slope_aspect', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='The direction a slope faces. While looking down a slope use a compass to record the direction you are facing (direction or degrees). - This measure provides an indication of sun and wind exposure that will influence soil temperature and evapotranspiration.', alt_descriptions={}, title=None, deprecated=None, todos=['This is no longer matching the listed IRI from GSC. When NMDC has its own slots, map this to the MIxS slot'], notes=[], comments=['Aspect is the orientation of slope, measured clockwise in degrees from 0 to 360, where 0 is north-facing, 90 is east-facing, 180 is south-facing, and 270 is west-facing.'], examples=[Example(value='35', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'slope_gradient': SlotDefinition(name='slope_gradient', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=['Slope is a percent. How does the validation work? Check to correct examples'], notes=[], comments=[], examples=[Example(value='10%', description=None, object=None), Example(value='10 %', description=None, object=None), Example(value='0.1', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'al_sat': SlotDefinition(name='al_sat', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='The relative abundance of aluminum in the sample', alt_descriptions={}, title='aluminum saturation/ extreme unusual properties', deprecated=None, todos=['This is no longer matching the listed IRI from GSC. When NMDC has its own slots, map this to the MIxS slot', 'Example & validation. Can we make rules that 27% & 27 % & 0.27 will validate?', \"I think it's weird the way GSC writes the title. I recommend this change. Thoughts? I would argue this isn't an extreme unusual property. It's just a biogeochemical measurement.\"], notes=[], comments=['Aluminum saturation is the percentage of the CEC occupies by aluminum. Like all cations, aluminum held by the cation exchange complex is in equilibrium with aluminum in the soil solution.'], examples=[Example(value='27%', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'al_sat_meth': SlotDefinition(name='al_sat_meth', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='Reference or method used in determining Aluminum saturation', alt_descriptions={}, title='aluminum saturation method/ extreme unusual properties', deprecated=None, todos=['This is no longer matching the listed IRI from GSC. When NMDC has its own slots, map this to the MIxS slot', \"I think it's weird the way GSC writes the title. I recommend this change. Thoughts?\"], notes=[], comments=['Required when aluminum saturation is provided.'], examples=[Example(value='https://doi.org/10.1371/journal.pone.0176357', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'annual_precpt': SlotDefinition(name='annual_precpt', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=['This is no longer matching the listed IRI from GSC, added example. When NMDC has its own slots, map this to the MIxS slot'], notes=[], comments=[], examples=[Example(value='8.94 inch', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'cur_vegetation': SlotDefinition(name='cur_vegetation', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='Vegetation classification from one or more standard classification systems, or agricultural crop', alt_descriptions={}, title=None, deprecated=None, todos=['This is no longer matching the listed IRI from GSC. When NMDC has its own slots, map this to the MIxS slot', 'Recommend changing this from text value to some king of ontology?'], notes=[], comments=['Values provided here can be specific species of vegetation or vegetation regions', 'See for vegetation regions- https://education.nationalgeographic.org/resource/vegetation-region'], examples=[Example(value='deciduous forest', description=None, object=None), Example(value='forest', description=None, object=None), Example(value='Bauhinia variegata', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'cur_vegetation_meth': SlotDefinition(name='cur_vegetation_meth', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=['This is no longer matching the listed IRI from GSC. When NMDC has its own slots, map this to the MIxS slot', \"I'm not sure this is a DOI, PMID, or URI. Should pool the community and find out how they accomplish this if provided.\"], notes=[], comments=['Required when current vegetation is provided.'], examples=[Example(value='https://doi.org/10.1111/j.1654-109X.2011.01154.x', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'heavy_metals': SlotDefinition(name='heavy_metals', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='Heavy metals present in the sample and their concentrations.', alt_descriptions={}, title='heavy metals/ extreme unusual properties', deprecated=None, todos=['This is no longer matching the listed IRI from GSC. When NMDC has its own slots, map this to the MIxS slot', 'Example & validation. Can we make rules that 27% & 27 % & 0.27 will validate?', \"I think it's weird the way GSC writes the title. I recommend this change. Thoughts? I would argue this isn't an extreme unusual property. It's just a biogeochemical measurement.\"], notes=[\"Changed to multi-valued. In MIxS, you add another column to denote multiple heavy metals. We don't have that ability in the submission portal.\"], comments=['For multiple heavy metals and concentrations, separate by ;'], examples=[Example(value='mercury 0.09 micrograms per gram', description=None, object=None), Example(value='mercury 0.09 ug/g; chromium 0.03 ug/g', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'heavy_metals_meth': SlotDefinition(name='heavy_metals_meth', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title='heavy metals method/ extreme unusual properties', deprecated=None, todos=['This is no longer matching the listed IRI from GSC. When NMDC has its own slots, map this to the MIxS slot'], notes=[], comments=['Required when heavy metals are provided', 'If different methods are used for multiple metals, indicate the metal and method. Separate metals by ;'], examples=[Example(value='https://doi.org/10.3390/ijms9040434', description=None, object=None), Example(value='mercury https://doi.org/10.1007/BF01056090; chromium https://doi.org/10.1007/s00216-006-0322-8', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=True, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'season_precpt': SlotDefinition(name='season_precpt', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title='average seasonal precipitation', deprecated=None, todos=['This is no longer matching the listed IRI from GSC. When NMDC has its own slots, map this to the MIxS slot', 'check validation & examples. always mm? so value only? Or value + unit'], notes=['mean and average are the same thing, but it seems like bad practice to not be consistent. Changed mean to average'], comments=['Seasons are defined as spring (March, April, May), summer (June, July, August), autumn (September, October, November) and winter (December, January, February).'], examples=[Example(value='0.4 inch', description=None, object=None), Example(value='10.16 mm', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'water_cont_soil_meth': SlotDefinition(name='water_cont_soil_meth', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=['Why is it soil water content method in the name but not the title? Is this slot used in other samples?', 'Soil water content can be measure MANY ways and often, multiple ways are used in one experiment (gravimetric water content and water holding capacity and water filled pore space, to name a few).', 'Should this be multi valued? How to we manage and validate this?'], notes=[], comments=['Required if providing water content'], examples=[Example(value='J. Nat. Prod. Plant Resour., 2012, 2 (4):500-503', description=None, object=None), Example(value='https://dec.alaska.gov/applications/spar/webcalc/definitions.htm', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'water_content': SlotDefinition(name='water_content', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={'expected_value': Annotation(tag='expected_value', value='string', extensions={}, annotations={}), 'preferred_unit': Annotation(tag='preferred_unit', value='gram per gram or cubic centimeter per cubic centimeter', extensions={}, annotations={})}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=['value in preferred unit is too limiting. need to change this', 'check and correct validation so examples are accepted', 'This is no longer matching the listed IRI from GSC. When NMDC has its own slots, map this to the MIxS slot', 'how to manage multiple water content methods?'], notes=[], comments=[], examples=[Example(value='75%', description=None, object=None), Example(value='75 %', description=None, object=None), Example(value='0.75 g water/g dry soil', description=None, object=None), Example(value='75% water holding capacity', description=None, object=None), Example(value='1.1 g fresh weight/ dry weight', description=None, object=None), Example(value='10% water filled pore space', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=True, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='string', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'ph_meth': SlotDefinition(name='ph_meth', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=['This can include a link to the instrument used or a citation for the method.'], examples=[Example(value='https://www.southernlabware.com/pc9500-benchtop-ph-conductivity-meter-kit-ph-accuracy-2000mv-ph-range-2-000-to-20-000.html?gclid=Cj0KCQiAwJWdBhCYARIsAJc4idCO5vtvbVMf545fcvdROFqa6zjzNSoywNx6K4k9Coo9cCc2pybtvGsaAiR0EALw_wcB', description=None, object=None), Example(value='https://doi.org/10.2136/sssabookser5.3.c16', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'tot_carb': SlotDefinition(name='tot_carb', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=['is this inorganic and organic? both? could use some clarification.', \"ug/L doesn't seem like the right units. Should check this slots usage in databases and re-evaluate. I couldn't find any references that provided this data in this format\"], notes=[], comments=[], examples=[Example(value='1 ug/L', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'tot_nitro_cont_meth': SlotDefinition(name='tot_nitro_cont_meth', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[Example(value='https://doi.org/10.2134/agronmonogr9.2.c32', description=None, object=None), Example(value='https://acsess.onlinelibrary.wiley.com/doi/full/10.2136/sssaj2009.0389?casa_token=bm0pYIUdNMgAAAAA%3AOWVRR0STHaOe-afTcTdxn5m1hM8n2ltM0wY-b1iYpYdD9dhwppk5j3LvC2IO5yhOIvyLVeQz4NZRCZo', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'tot_nitro_content': SlotDefinition(name='tot_nitro_content', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[Example(value='5 mg N/ L', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'tot_org_c_meth': SlotDefinition(name='tot_org_c_meth', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[Example(value='https://doi.org/10.1080/07352680902776556', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'tot_org_carb': SlotDefinition(name='tot_org_carb', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=['check description. How are they different?'], notes=[], comments=[], examples=[Example(value='5 mg N/ L', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'salinity_meth': SlotDefinition(name='salinity_meth', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[Example(value='https://doi.org/10.1007/978-1-61779-986-0_28', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'sieving': SlotDefinition(name='sieving', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=['check validation and examples'], notes=[], comments=['Describe how samples were composited or sieved.', \"Use 'sample link' to indicate which samples were combined.\"], examples=[Example(value='combined 2 cores | 4mm sieved', description=None, object=None), Example(value='4 mm sieved and homogenized', description=None, object=None), Example(value='50 g | 5 cores | 2 mm sieved', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'climate_environment': SlotDefinition(name='climate_environment', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=['description says \"can include multiple climates\" but multivalued is set to false', 'add examples, i need to see some examples to add correctly formatted example.'], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'gaseous_environment': SlotDefinition(name='gaseous_environment', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[\"would like to see usage examples for this slot. Requiring micromole/L seems too limiting and doesn't match expected_value value\", \"did I do this right? keep the example that's provided and add another? so as to not override\"], notes=[], comments=[], examples=[Example(value='CO2; 500ppm above ambient; constant', description=None, object=None), Example(value='nitric oxide;0.5 micromole per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'watering_regm': SlotDefinition(name='watering_regm', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[Example(value='1 liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M', description=None, object=None), Example(value='75% water holding capacity; constant', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'source_mat_id': SlotDefinition(name='source_mat_id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A globally unique identifier assigned to the biological sample.', alt_descriptions={}, title='source material identifier', deprecated=None, todos=['Currently, the comments say to use UUIDs. However, if we implement assigning NMDC identifiers with the minter we dont need to require a GUID. It can be an optional field to fill out only if they already have a resolvable ID.'], notes=[], comments=['Identifiers must be prefixed. Possible FAIR prefixes are IGSNs (http://www.geosamples.org/getigsn), NCBI biosample accession numbers, ARK identifiers (https://arks.org/). These IDs enable linking to derived analytes and subsamples. If you have not assigned FAIR identifiers to your samples, you can generate UUIDs (https://www.uuidgenerator.net/).'], examples=[Example(value='IGSN:AU1243', description=None, object=None), Example(value='UUID:24f1467a-40f4-11ed-b878-0242ac120002', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:Biosample', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={'samp_name_unique_key': UniqueKey(unique_key_name='samp_name_unique_key', unique_key_slots=['samp_name'], consider_nulls_inequal=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[\"id is already required to be unique because it is the identifier in Biosample's parent class, NamedThing. Remember, notes like this could be exposed to end users. CJM suggested YAML # comment\"], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, rules=[ClassRule(preconditions=AnonymousClassExpression(extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={'dna_cont_well': SlotDefinition(name='dna_cont_well', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern='.+', structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}), postconditions=AnonymousClassExpression(extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={'dna_cont_type': SlotDefinition(name='dna_cont_type', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string='plate', equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}), elseconditions=None, bidirectional=None, open_world=None, rank=None, deactivated=None, extensions={}, annotations={}, description=\"DNA samples shipped to JGI for metagenomic analysis in tubes can't have any value for their plate position.\", alt_descriptions={}, title='dna_well_requires_plate', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None), ClassRule(preconditions=AnonymousClassExpression(extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={'dna_cont_type': SlotDefinition(name='dna_cont_type', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string='plate', equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}), postconditions=AnonymousClassExpression(extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={'dna_cont_well': SlotDefinition(name='dna_cont_well', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern='^(?!A1|A12|H1|H12)(([A-H][1-9])|([A-H]1[0-2]))$', structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}), elseconditions=None, bidirectional=None, open_world=None, rank=None, deactivated=None, extensions={}, annotations={}, description='DNA samples in plates must have a plate position that matches the regex. Note the requirement for an empty string in the tube case. Waiting for value_present validation to be added to runtime', alt_descriptions={}, title='dna_plate_requires_well', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None), ClassRule(preconditions=AnonymousClassExpression(extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={'rna_cont_well': SlotDefinition(name='rna_cont_well', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern='.+', structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}), postconditions=AnonymousClassExpression(extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={'rna_cont_type': SlotDefinition(name='rna_cont_type', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string='plate', equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}), elseconditions=None, bidirectional=None, open_world=None, rank=None, deactivated=None, extensions={}, annotations={}, description=\"RNA samples shipped to JGI for metagenomic analysis in tubes can't have any value for their plate position.\", alt_descriptions={}, title='rna_well_requires_plate', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None), ClassRule(preconditions=AnonymousClassExpression(extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={'rna_cont_type': SlotDefinition(name='rna_cont_type', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string='plate', equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}), postconditions=AnonymousClassExpression(extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={'rna_cont_well': SlotDefinition(name='rna_cont_well', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern='^(?!A1|A12|H1|H12)(([A-H][1-9])|([A-H]1[0-2]))$', structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}), elseconditions=None, bidirectional=None, open_world=None, rank=None, deactivated=None, extensions={}, annotations={}, description='RNA samples in plates must have a plate position that matches the regex. Note the requirement for an empty string in the tube case. Waiting for value_present validation to be added to runtime', alt_descriptions={}, title='rna_plate_requires_well', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None)], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'Study': ClassDefinition(name='Study', id_prefixes=[], definition_uri='https://w3id.org/nmdc/Study', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A study summarizes the overall goal of a research initiative and outlines the key objective of its underlying projects.', alt_descriptions={'embl.ena': AltDescription(source='embl.ena', description='A study (project) groups together data submitted to the archive and controls its release date. A study accession is typically used when citing data submitted to ENA')}, title=None, deprecated=None, todos=['determine how to get data values for submitted_to_insdc, investigation_type, experimental_factor', 'project_name is redundant with name, so excluding it'], notes=['sample GOLD link https://identifiers.org/gold:Gs0110115', 'sample insdc.srs link https://www.ebi.ac.uk/ena/browser/view/PRJEB45055 ?', 'sample mgnify link https://www.ebi.ac.uk/metagenomics/studies/MGYS00005757', 'GOLD, insdc.srs and mgnify are reasonable prefixes for alternative study identifiers, but no longer for the Study.id'], comments=[], examples=[], in_subset=['sample subset'], from_schema='https://w3id.org/nmdc/nmdc', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=['proposal', 'research proposal', 'research study', 'investigation', 'project', 'umbrella project'], structured_aliases={}, mappings=[], exact_mappings=['SIO:001066', 'NCIT:C63536', 'OBI:0000066', 'ISA:Study'], close_mappings=['NCIT:C41198', 'ISA:Investigation'], related_mappings=[], narrow_mappings=[], broad_mappings=['prov:Activity'], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='NamedThing', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['emsl_project_dois', 'neon_study_identifiers', 'Study_id', 'Study_alternative_identifiers', 'gnps_task_identifiers', 'abstract', 'alternative_descriptions', 'Study_alternative_names', 'alternative_titles', 'Study_doi', 'ecosystem', 'ecosystem_category', 'ecosystem_subtype', 'ecosystem_type', 'ess_dive_datasets', 'funding_sources', 'gold_study_identifiers', 'has_credit_associations', 'Study_insdc_bioproject_identifiers', 'massive_study_identifiers', 'mgnify_project_identifiers', 'Study_notes', 'objective', 'principal_investigator', 'publications', 'Study_related_identifiers', 'relevant_protocols', 'specific_ecosystem', 'study_image', 'title', 'type', 'Study_websites', 'Study_name', 'Study_description'], slot_usage={'id': SlotDefinition(name='id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=PatternExpression(syntax='{id_nmdc_prefix}:sty-{id_shoulder}-{id_blade}{id_version}{id_locus}', interpolated=True, partial_match=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'doi': SlotDefinition(name='doi', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={'display_hint': Annotation(tag='display_hint', value='DOI associated with the data in this study. This is required when data is already generated.', extensions={}, annotations={})}, description='The dataset citation for this study', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'name': SlotDefinition(name='name', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={'display_hint': Annotation(tag='display_hint', value='Provide a name for the study your samples will belong with.', extensions={}, annotations={})}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'websites': SlotDefinition(name='websites', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={'display_hint': Annotation(tag='display_hint', value=\"Link to the Principal Investigator's research lab webpage or the study webpage associated with this collection of samples. Multiple links can be provided.\", extensions={}, annotations={})}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'description': SlotDefinition(name='description', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={'display_hint': Annotation(tag='display_hint', value='Provide a brief description of your study.', extensions={}, annotations={})}, description=\"A brief summary that details the study you're submitted to NMDC\", alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'notes': SlotDefinition(name='notes', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={'display_hint': Annotation(tag='display_hint', value='Add any additional notes or comments about this study.', extensions={}, annotations={})}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'alternative_identifiers': SlotDefinition(name='alternative_identifiers', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='Unique identifier for a study submitted to additional resources. Matches that which has been submitted to NMDC', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'alternative_names': SlotDefinition(name='alternative_names', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={'display_hint': Annotation(tag='display_hint', value='Project, study, or sample set names the are also associated with this submission or other names / identifiers for this study.', extensions={}, annotations={})}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'related_identifiers': SlotDefinition(name='related_identifiers', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='Unique identifier for a study submitted to additional resources. Similar, but not necessarily identical to that which has been submitted to NMDC', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'insdc_bioproject_identifiers': SlotDefinition(name='insdc_bioproject_identifiers', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={'display_hint': Annotation(tag='display_hint', value='Provide the NCBI BioProject Accession Number associated with the listed NCBI BioProject Title.', extensions={}, annotations={})}, description='Unique identifier for a bioproject submitted to INSDC that relates to the NMDC submitted study.', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:Study', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'BiosampleProcessing': ClassDefinition(name='BiosampleProcessing', id_prefixes=[], definition_uri='https://w3id.org/nmdc/BiosampleProcessing', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A process that takes one or more biosamples as inputs and generates one or as outputs. Examples of outputs include samples cultivated from another sample or data objects created by instruments runs.', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/nmdc', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=['material processing'], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=['OBI:0000094'], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='NamedThing', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['name', 'description', 'alternative_identifiers', 'BiosampleProcessing_has_input', 'BiosampleProcessing_id'], slot_usage={'id': SlotDefinition(name='id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=PatternExpression(syntax='{id_nmdc_prefix}:bsmprc-{id_shoulder}-{id_blade}{id_version}{id_locus}', interpolated=True, partial_match=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'has_input': SlotDefinition(name='has_input', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='Biosample', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:BiosampleProcessing', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'OmicsProcessing': ClassDefinition(name='OmicsProcessing', id_prefixes=[], definition_uri='https://w3id.org/nmdc/OmicsProcessing', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='The methods and processes used to generate omics data from a biosample or organism.', alt_descriptions={'embl.ena': AltDescription(source='embl.ena', description='An experiment contains information about a sequencing experiment including library and instrument details.')}, title=None, deprecated=None, todos=[], notes=[], comments=['The ID prefix for objects coming from GOLD will be gold:Gp'], examples=[], in_subset=['sample subset'], from_schema='https://w3id.org/nmdc/nmdc', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=['omics assay', 'sequencing project', 'experiment'], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=['OBI:0000070', 'ISA:Assay'], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='BiosampleProcessing', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['name', 'description', 'alternative_identifiers', 'add_date', 'chimera_check', 'gold_sequencing_project_identifiers', 'has_input', 'has_output', 'insdc_experiment_identifiers', 'instrument_name', 'mod_date', 'ncbi_project_name', 'nucl_acid_amp', 'nucl_acid_ext', 'omics_type', 'part_of', 'pcr_cond', 'pcr_primers', 'principal_investigator', 'processing_institution', 'samp_vol_we_dna_ext', 'seq_meth', 'seq_quality_check', 'target_gene', 'target_subfragment', 'type', 'OmicsProcessing_id', 'OmicsProcessing_has_input'], slot_usage={'id': SlotDefinition(name='id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=PatternExpression(syntax='{id_nmdc_prefix}:omprc-{id_shoulder}-{id_blade}{id_version}{id_locus}', interpolated=True, partial_match=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'has_input': SlotDefinition(name='has_input', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:OmicsProcessing', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'CreditAssociation': ClassDefinition(name='CreditAssociation', id_prefixes=[], definition_uri='https://w3id.org/nmdc/CreditAssociation', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='This class supports binding associated researchers to studies. There will be at least a slot for a CRediT Contributor Role (https://casrai.org/credit/) and for a person value Specifically see the associated researchers tab on the NMDC_SampleMetadata-V4_CommentsForUpdates at https://docs.google.com/spreadsheets/d/1INlBo5eoqn2efn4H2P2i8rwRBtnbDVTqXrochJEAPko/edit#gid=0', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/nmdc', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=['study role', 'credit table', 'associated researchers'], structured_aliases={}, mappings=['prov:Association'], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['applies_to_person', 'applied_role', 'applied_roles', 'type'], slot_usage={}, attributes={}, class_uri='prov:Association', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'GenomeFeature': ClassDefinition(name='GenomeFeature', id_prefixes=[], definition_uri='https://w3id.org/nmdc/GenomeFeature', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A feature localized to an interval along a genome', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=['corresponds to an entry in GFF3'], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/annotation', imported_from=None, source=None, in_language=None, see_also=['https://github.com/The-Sequence-Ontology/Specifications/blob/master/gff3.md'], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['GenomeFeature_seqid', 'GenomeFeature_type', 'GenomeFeature_start', 'GenomeFeature_end', 'GenomeFeature_strand', 'GenomeFeature_phase', 'GenomeFeature_encodes', 'GenomeFeature_feature_type'], slot_usage={'seqid': SlotDefinition(name='seqid', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='The ID of the landmark used to establish the coordinate system for the current feature.', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='string', range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'type': SlotDefinition(name='type', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A type from the sequence ontology', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='OntologyClass', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'start': SlotDefinition(name='start', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='The start of the feature in positive 1-based integer coordinates', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=['biolink:start_interbase_coordinate'], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='gff_coordinate', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'end': SlotDefinition(name='end', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='The end of the feature in positive 1-based integer coordinates', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=['- \"constraint: end > start\" - \"For features that cross the origin of a circular feature, end = the position of the end + the length of the landmark feature.\"'], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=['biolink:end_interbase_coordinate'], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='gff_coordinate', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'strand': SlotDefinition(name='strand', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=\"The strand on which a feature is located. Has a value of '+' (sense strand or forward strand) or '-' (anti-sense strand or reverse strand).\", alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=['biolink:strand'], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'phase': SlotDefinition(name='phase', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='The phase for a coding sequence entity. For example, phase of a CDS as represented in a GFF3 with a value of 0, 1 or 2.', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=['biolink:phase'], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='integer', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=0, maximum_value=0, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'encodes': SlotDefinition(name='encodes', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='The gene product encoded by this feature. Typically this is used for a CDS feature or gene feature which will encode a protein. It can also be used by a nc transcript ot gene feature that encoded a ncRNA', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='GeneProduct', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'feature_type': SlotDefinition(name='feature_type', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='TODO: Yuri to write', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:GenomeFeature', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'FunctionalAnnotationTerm': ClassDefinition(name='FunctionalAnnotationTerm', id_prefixes=[], definition_uri='https://w3id.org/nmdc/FunctionalAnnotationTerm', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='Abstract grouping class for any term/descriptor that can be applied to a functional unit of a genome (protein, ncRNA, complex).', alt_descriptions={}, title=None, deprecated=None, todos=['decide if this should be used for product naming'], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/annotation', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=['function', 'FunctionalAnnotation'], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='OntologyClass', abstract=True, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['id', 'name', 'description', 'alternative_identifiers'], slot_usage={}, attributes={}, class_uri='nmdc:FunctionalAnnotationTerm', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'Pathway': ClassDefinition(name='Pathway', id_prefixes=['KEGG_PATHWAY', 'COG'], definition_uri='https://w3id.org/nmdc/Pathway', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A pathway is a sequence of steps/reactions carried out by an organism or community of organisms', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/annotation', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=['biological process', 'metabolic pathway', 'signaling pathway'], structured_aliases={}, mappings=[], exact_mappings=['biolink:Pathway'], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='FunctionalAnnotationTerm', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['id', 'name', 'description', 'alternative_identifiers', 'Pathway_has_part'], slot_usage={'has_part': SlotDefinition(name='has_part', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A pathway can be broken down to a series of reaction step', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=True, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='Reaction', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:Pathway', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'Reaction': ClassDefinition(name='Reaction', id_prefixes=['KEGG.REACTION', 'RHEA', 'MetaCyc', 'EC', 'GO', 'MetaNetX', 'SEED', 'RetroRules'], definition_uri='https://w3id.org/nmdc/Reaction', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='An individual biochemical transformation carried out by a functional unit of an organism, in which a collection of substrates are transformed into a collection of products. Can also represent transporters', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/annotation', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=['biolink:MolecularActivity'], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='FunctionalAnnotationTerm', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['id', 'name', 'description', 'alternative_identifiers', 'Reaction_left_participants', 'Reaction_right_participants', 'Reaction_direction', 'Reaction_smarts_string', 'Reaction_is_diastereoselective', 'Reaction_is_stereo', 'Reaction_is_balanced', 'Reaction_is_transport', 'Reaction_is_fully_characterized'], slot_usage={'left_participants': SlotDefinition(name='left_participants', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='has_participants', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=True, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='ReactionParticipant', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'right_participants': SlotDefinition(name='right_participants', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='has_participants', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=True, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='ReactionParticipant', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'direction': SlotDefinition(name='direction', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='One of l->r, r->l, bidirectional, neutral', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'smarts_string': SlotDefinition(name='smarts_string', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='string', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'is_diastereoselective': SlotDefinition(name='is_diastereoselective', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='boolean', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'is_stereo': SlotDefinition(name='is_stereo', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='boolean', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'is_balanced': SlotDefinition(name='is_balanced', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='boolean', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'is_transport': SlotDefinition(name='is_transport', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='boolean', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'is_fully_characterized': SlotDefinition(name='is_fully_characterized', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='False if includes R-groups', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='boolean', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:Reaction', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'ReactionParticipant': ClassDefinition(name='ReactionParticipant', id_prefixes=[], definition_uri='https://w3id.org/nmdc/ReactionParticipant', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='Instances of this link a reaction to a chemical entity participant', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/annotation', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['ReactionParticipant_chemical', 'ReactionParticipant_stoichiometry'], slot_usage={'chemical': SlotDefinition(name='chemical', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='ChemicalEntity', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'stoichiometry': SlotDefinition(name='stoichiometry', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='integer', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:ReactionParticipant', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'OrthologyGroup': ClassDefinition(name='OrthologyGroup', id_prefixes=['CATH', 'EGGNOG', 'KEGG.ORTHOLOGY', 'PANTHER.FAMILY', 'PFAM', 'SUPFAM', 'TIGRFAM'], definition_uri='https://w3id.org/nmdc/OrthologyGroup', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A set of genes or gene products in which all members are orthologous', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=['KEGG.ORTHOLOGY prefix is used for KO numbers'], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/annotation', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=['biolink:GeneFamily'], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='FunctionalAnnotationTerm', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['id', 'name', 'description', 'alternative_identifiers'], slot_usage={}, attributes={}, class_uri='nmdc:OrthologyGroup', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'FunctionalAnnotation': ClassDefinition(name='FunctionalAnnotation', id_prefixes=[], definition_uri='https://w3id.org/nmdc/FunctionalAnnotation', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='An assignment of a function term (e.g. reaction or pathway) that is executed by a gene product, or which the gene product plays an active role in. Functional annotations can be assigned manually by curators, or automatically in workflows. In the context of NMDC, all function annotation is performed automatically, typically using HMM or Blast type methods', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=['move id slot usage patterns to has_function slot usage?'], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/annotation', imported_from=None, source=None, in_language=None, see_also=['https://img.jgi.doe.gov/docs/functional-annotation.pdf', 'https://github.com/microbiomedata/mg_annotation/blob/master/functional-annotation.wdl'], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=['biolink:GeneToGoTermAssociation'], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['FunctionalAnnotation_was_generated_by', 'subject', 'FunctionalAnnotation_has_function', 'FunctionalAnnotation_type'], slot_usage={'has_function': SlotDefinition(name='has_function', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=['this slot had been called id', 'Still missing patterns for COG and RetroRules.', \"These patterns aren't tied to the listed prefixes. A discussion about that possibility had been started, including the question of whether these lists are intended to be open examples or closed\"], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern='^(KEGG_PATHWAY:\\\\w{2,4}\\\\d{5}|KEGG.REACTION:R\\\\d+|RHEA:\\\\d{5}|MetaCyc:[A-Za-z0-9+_.%-:]+|EC:\\\\d{1,2}(\\\\.\\\\d{0,3}){0,3}|GO:\\\\d{7}|MetaNetX:(MNXR\\\\d+|EMPTY)|SEED:\\\\w+|KEGG\\\\.ORTHOLOGY:K\\\\d+|EGGNOG:\\\\w+|PFAM:PF\\\\d{5}|TIGRFAM:TIGR\\\\d+|SUPFAM:\\\\w+|CATH:[1-6]\\\\.[0-9]+\\\\.[0-9]+\\\\.[0-9]+|PANTHER.FAMILY:PTHR\\\\d{5}(\\\\:SF\\\\d{1,3})?)$', structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'type': SlotDefinition(name='type', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='TODO', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='OntologyClass', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'was_generated_by': SlotDefinition(name='was_generated_by', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='provenance for the annotation.', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=['Note to be consistent with the rest of the NMDC schema we use the PROV annotation model, rather than GPAD'], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='MetagenomeAnnotationActivity', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:FunctionalAnnotation', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'NamedThing': ClassDefinition(name='NamedThing', id_prefixes=[], definition_uri='https://w3id.org/nmdc/NamedThing', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='a databased entity or concept/class', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/core', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=True, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['id', 'name', 'description', 'alternative_identifiers'], slot_usage={}, attributes={}, class_uri='nmdc:NamedThing', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'MaterialEntity': ClassDefinition(name='MaterialEntity', id_prefixes=[], definition_uri='https://w3id.org/nmdc/MaterialEntity', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title='Material Entity', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/core', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=['Material', 'Physical entity'], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='NamedThing', abstract=True, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['id', 'name', 'description', 'alternative_identifiers'], slot_usage={}, attributes={}, class_uri='nmdc:MaterialEntity', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'ProcessedSample': ClassDefinition(name='ProcessedSample', id_prefixes=[], definition_uri='https://w3id.org/nmdc/ProcessedSample', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title='Processed Sample', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/core', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='MaterialEntity', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['name', 'description', 'alternative_identifiers', 'biomaterial_purity', 'dna_absorb1', 'dna_concentration', 'external_database_identifiers', 'nucleic_acid_concentration', 'ProcessedSample_id'], slot_usage={'id': SlotDefinition(name='id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=PatternExpression(syntax='{id_nmdc_prefix}:procsm-{id_shoulder}-{id_blade}{id_version}{id_locus}', interpolated=True, partial_match=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:ProcessedSample', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'AnalyticalSample': ClassDefinition(name='AnalyticalSample', id_prefixes=[], definition_uri='https://w3id.org/nmdc/AnalyticalSample', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title='Analytical Sample', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/core', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='MaterialEntity', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['name', 'description', 'alternative_identifiers', 'AnalyticalSample_id'], slot_usage={'id': SlotDefinition(name='id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=PatternExpression(syntax='{id_nmdc_prefix}:ansm-{id_shoulder}-{id_blade}{id_version}{id_locus}', interpolated=True, partial_match=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:AnalyticalSample', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'Site': ClassDefinition(name='Site', id_prefixes=[], definition_uri='https://w3id.org/nmdc/Site', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title='Site', deprecated=None, todos=[], notes=[], comments=['BCO sample collection site ?'], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/core', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='MaterialEntity', abstract=True, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['name', 'description', 'alternative_identifiers', 'Site_id'], slot_usage={'id': SlotDefinition(name='id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=PatternExpression(syntax='{id_nmdc_prefix}:site-{id_shoulder}-{id_blade}{id_version}{id_locus}', interpolated=True, partial_match=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:Site', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'PlannedProcess': ClassDefinition(name='PlannedProcess', id_prefixes=[], definition_uri='https://w3id.org/nmdc/PlannedProcess', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title='Planned Process', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/core', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=['OBI:0000011'], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='NamedThing', abstract=True, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['id', 'name', 'description', 'alternative_identifiers', 'has_input', 'has_output', 'protocol_link', 'start_date', 'end_date'], slot_usage={}, attributes={}, class_uri='OBI:0000011', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'OntologyClass': ClassDefinition(name='OntologyClass', id_prefixes=[], definition_uri='https://w3id.org/nmdc/OntologyClass', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[\"The identifiers for terms from external ontologies can't have their ids constrained to the nmdc namespace\"], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/core', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='NamedThing', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['id', 'name', 'description', 'alternative_identifiers'], slot_usage={}, attributes={}, class_uri='nmdc:OntologyClass', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'EnvironmentalMaterialTerm': ClassDefinition(name='EnvironmentalMaterialTerm', id_prefixes=[], definition_uri='https://w3id.org/nmdc/EnvironmentalMaterialTerm', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/core', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='OntologyClass', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['id', 'name', 'description', 'alternative_identifiers'], slot_usage={}, attributes={}, class_uri='nmdc:EnvironmentalMaterialTerm', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'AttributeValue': ClassDefinition(name='AttributeValue', id_prefixes=[], definition_uri='https://w3id.org/nmdc/AttributeValue', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='The value for any value of a attribute for a sample. This object can hold both the un-normalized atomic value and the structured value', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/core', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['has_raw_value', 'was_generated_by', 'AttributeValue_type'], slot_usage={'type': SlotDefinition(name='type', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='An optional string that specified the type of object.', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:AttributeValue', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'InstrumentValue': ClassDefinition(name='InstrumentValue', id_prefixes=[], definition_uri='https://w3id.org/nmdc/InstrumentValue', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/core', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='AttributeValue', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['has_raw_value', 'was_generated_by', 'AttributeValue_type', 'has_unit', 'has_numeric_value', 'instrument_name'], slot_usage={}, attributes={}, class_uri='nmdc:InstrumentValue', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'QuantityValue': ClassDefinition(name='QuantityValue', id_prefixes=[], definition_uri='https://w3id.org/nmdc/QuantityValue', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A simple quantity, e.g. 2cm', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/core', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=['schema:QuantityValue'], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='AttributeValue', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['was_generated_by', 'AttributeValue_type', 'QuantityValue_has_unit', 'QuantityValue_has_numeric_value', 'has_minimum_numeric_value', 'has_maximum_numeric_value', 'QuantityValue_has_raw_value'], slot_usage={'has_raw_value': SlotDefinition(name='has_raw_value', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='Unnormalized atomic string representation, should in syntax {number} {unit}', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'has_unit': SlotDefinition(name='has_unit', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='The unit of the quantity', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'has_numeric_value': SlotDefinition(name='has_numeric_value', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='The number part of the quantity', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='double', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:QuantityValue', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'ImageValue': ClassDefinition(name='ImageValue', id_prefixes=[], definition_uri='https://w3id.org/nmdc/ImageValue', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='An attribute value representing an image.', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/core', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='AttributeValue', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['has_raw_value', 'was_generated_by', 'AttributeValue_type', 'url', 'description', 'display_order'], slot_usage={}, attributes={}, class_uri='nmdc:ImageValue', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'PersonValue': ClassDefinition(name='PersonValue', id_prefixes=[], definition_uri='https://w3id.org/nmdc/PersonValue', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='An attribute value representing a person', alt_descriptions={}, title=None, deprecated=None, todos=['add additional fields e.g for institution', 'deprecate \"has_raw_value\" in favor of \"name\"'], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/core', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='AttributeValue', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['was_generated_by', 'AttributeValue_type', 'PersonValue_orcid', 'profile_image_url', 'PersonValue_email', 'PersonValue_name', 'websites', 'PersonValue_has_raw_value'], slot_usage={'orcid': SlotDefinition(name='orcid', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={'display_hint': Annotation(tag='display_hint', value='Open Researcher and Contributor ID for this person. See https://orcid.org', extensions={}, annotations={})}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'email': SlotDefinition(name='email', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={'display_hint': Annotation(tag='display_hint', value='Email address for this person.', extensions={}, annotations={})}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'has_raw_value': SlotDefinition(name='has_raw_value', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='The full name of the Investigator in format FIRST LAST.', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=['May eventually be deprecated in favor of \"name\".'], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'name': SlotDefinition(name='name', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={'display_hint': Annotation(tag='display_hint', value='First name, middle initial, and last name of this person.', extensions={}, annotations={})}, description='The full name of the Investigator. It should follow the format FIRST [MIDDLE NAME| MIDDLE INITIAL] LAST, where MIDDLE NAME| MIDDLE INITIAL is optional.', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:PersonValue', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'MagBin': ClassDefinition(name='MagBin', id_prefixes=[], definition_uri='https://w3id.org/nmdc/MagBin', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/core', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['bin_name', 'bin_quality', 'completeness', 'contamination', 'gene_count', 'gtdbtk_class', 'gtdbtk_domain', 'gtdbtk_family', 'gtdbtk_genus', 'gtdbtk_order', 'gtdbtk_phylum', 'gtdbtk_species', 'members_id', 'num_16s', 'num_23s', 'num_5s', 'num_t_rna', 'number_of_contig', 'total_bases', 'type'], slot_usage={}, attributes={}, class_uri='nmdc:MagBin', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'Instrument': ClassDefinition(name='Instrument', id_prefixes=[], definition_uri='https://w3id.org/nmdc/Instrument', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A material entity that is designed to perform a function in a scientific investigation, but is not a reagent[OBI].', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/core', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=['device'], structured_aliases={}, mappings=[], exact_mappings=['OBI:0000485'], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='NamedThing', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['name', 'description', 'alternative_identifiers', 'Instrument_id'], slot_usage={'id': SlotDefinition(name='id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=PatternExpression(syntax='{id_nmdc_prefix}:inst-{id_shoulder}-{id_blade}{id_version}{id_locus}', interpolated=True, partial_match=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:Instrument', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'MetaboliteQuantification': ClassDefinition(name='MetaboliteQuantification', id_prefixes=[], definition_uri='https://w3id.org/nmdc/MetaboliteQuantification', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='This is used to link a metabolomics analysis workflow to a specific metabolite', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/core', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['alternative_identifiers', 'highest_similarity_score', 'metabolite_quantified'], slot_usage={}, attributes={}, class_uri='nmdc:MetaboliteQuantification', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'PeptideQuantification': ClassDefinition(name='PeptideQuantification', id_prefixes=[], definition_uri='https://w3id.org/nmdc/PeptideQuantification', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='This is used to link a metaproteomics analysis workflow to a specific peptide sequence and related information', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/core', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['all_proteins', 'best_protein', 'min_q_value', 'peptide_sequence', 'peptide_spectral_count', 'peptide_sum_masic_abundance'], slot_usage={}, attributes={}, class_uri='nmdc:PeptideQuantification', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'ProteinQuantification': ClassDefinition(name='ProteinQuantification', id_prefixes=[], definition_uri='https://w3id.org/nmdc/ProteinQuantification', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='This is used to link a metaproteomics analysis workflow to a specific protein', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/core', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['ProteinQuantification_best_protein', 'ProteinQuantification_all_proteins', 'ProteinQuantification_peptide_sequence_count', 'ProteinQuantification_protein_spectral_count', 'ProteinQuantification_protein_sum_masic_abundance'], slot_usage={'best_protein': SlotDefinition(name='best_protein', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='the specific protein identifier most correctly grouped to its associated peptide sequences', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='GeneProduct', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'all_proteins': SlotDefinition(name='all_proteins', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='the grouped list of protein identifiers associated with the peptide sequences that were grouped to a best protein', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=True, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='GeneProduct', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'peptide_sequence_count': SlotDefinition(name='peptide_sequence_count', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='count of peptide sequences grouped to the best_protein', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='integer', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'protein_spectral_count': SlotDefinition(name='protein_spectral_count', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='sum of filter passing MS2 spectra associated with the best protein within a given LC-MS/MS data file', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='integer', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'protein_sum_masic_abundance': SlotDefinition(name='protein_sum_masic_abundance', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='combined MS1 extracted ion chromatograms derived from MS2 spectra associated with the best protein from a given LC-MS/MS data file using the MASIC tool', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='integer', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:ProteinQuantification', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'ChemicalEntity': ClassDefinition(name='ChemicalEntity', id_prefixes=['CAS', 'CHEBI', 'CHEMBL.COMPOUND', 'DRUGBANK', 'HMDB', 'KEGG.COMPOUND', 'MESH', 'PUBCHEM.COMPOUND'], definition_uri='https://w3id.org/nmdc/ChemicalEntity', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='An atom or molecule that can be represented with a chemical formula. Include lipids, glycans, natural products, drugs. There may be different terms for distinct acid-base forms, protonation states', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=['As with the parent OntologyClass, we will not assign an nmdc id pattern or typecode to this class.'], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/core', imported_from=None, source=None, in_language=None, see_also=['https://bioconductor.org/packages/devel/data/annotation/vignettes/metaboliteIDmapping/inst/doc/metaboliteIDmapping.html'], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=['metabolite', 'chemical substance', 'chemical compound', 'chemical'], structured_aliases={}, mappings=[], exact_mappings=['biolink:ChemicalSubstance'], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='OntologyClass', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['id', 'name', 'description', 'alternative_identifiers', 'ChemicalEntity_inchi', 'ChemicalEntity_inchi_key', 'ChemicalEntity_smiles', 'ChemicalEntity_chemical_formula'], slot_usage={'inchi': SlotDefinition(name='inchi', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='string', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'inchi_key': SlotDefinition(name='inchi_key', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='string', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'smiles': SlotDefinition(name='smiles', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A string encoding of a molecular graph, no chiral or isotopic information. There are usually a large number of valid SMILES which represent a given structure. For example, CCO, OCC and C(O)C all specify the structure of ethanol.', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=True, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='string', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'chemical_formula': SlotDefinition(name='chemical_formula', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A generic grouping for molecular formulae and empirical formulae', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='string', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:ChemicalEntity', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'GeneProduct': ClassDefinition(name='GeneProduct', id_prefixes=['PR', 'UniProtKB', 'gtpo'], definition_uri='https://w3id.org/nmdc/GeneProduct', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A molecule encoded by a gene that has an evolved function', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=['we may include a more general gene product class in future to allow for ncRNA annotation'], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/core', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=['biolink:GeneProduct'], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='NamedThing', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['id', 'name', 'description', 'alternative_identifiers'], slot_usage={}, attributes={}, class_uri='nmdc:GeneProduct', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'TextValue': ClassDefinition(name='TextValue', id_prefixes=[], definition_uri='https://w3id.org/nmdc/TextValue', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A basic string value', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/core', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='AttributeValue', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['has_raw_value', 'was_generated_by', 'AttributeValue_type', 'language'], slot_usage={}, attributes={}, class_uri='nmdc:TextValue', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'UrlValue': ClassDefinition(name='UrlValue', id_prefixes=[], definition_uri='https://w3id.org/nmdc/UrlValue', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A value that is a string that conforms to URL syntax', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/core', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='AttributeValue', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['has_raw_value', 'was_generated_by', 'AttributeValue_type'], slot_usage={}, attributes={}, class_uri='nmdc:UrlValue', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'TimestampValue': ClassDefinition(name='TimestampValue', id_prefixes=[], definition_uri='https://w3id.org/nmdc/TimestampValue', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A value that is a timestamp. The range should be ISO-8601', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=['removed the following slots: year, month, day'], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/core', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='AttributeValue', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['has_raw_value', 'was_generated_by', 'AttributeValue_type'], slot_usage={}, attributes={}, class_uri='nmdc:TimestampValue', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'IntegerValue': ClassDefinition(name='IntegerValue', id_prefixes=[], definition_uri='https://w3id.org/nmdc/IntegerValue', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A value that is an integer', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/core', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='AttributeValue', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['has_raw_value', 'was_generated_by', 'AttributeValue_type', 'has_numeric_value'], slot_usage={}, attributes={}, class_uri='nmdc:IntegerValue', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'BooleanValue': ClassDefinition(name='BooleanValue', id_prefixes=[], definition_uri='https://w3id.org/nmdc/BooleanValue', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A value that is a boolean', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/core', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='AttributeValue', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['has_raw_value', 'was_generated_by', 'AttributeValue_type', 'has_boolean_value'], slot_usage={}, attributes={}, class_uri='nmdc:BooleanValue', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'ControlledTermValue': ClassDefinition(name='ControlledTermValue', id_prefixes=[], definition_uri='https://w3id.org/nmdc/ControlledTermValue', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A controlled term or class from an ontology', alt_descriptions={}, title=None, deprecated=None, todos=['add fields for ontology, branch'], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/core', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='AttributeValue', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['has_raw_value', 'was_generated_by', 'AttributeValue_type', 'term'], slot_usage={}, attributes={}, class_uri='nmdc:ControlledTermValue', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'ControlledIdentifiedTermValue': ClassDefinition(name='ControlledIdentifiedTermValue', id_prefixes=[], definition_uri='https://w3id.org/nmdc/ControlledIdentifiedTermValue', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A controlled term or class from an ontology, requiring the presence of term with an id', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=['To be used for slots like env_broad_scale'], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/core', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='ControlledTermValue', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['has_raw_value', 'was_generated_by', 'AttributeValue_type', 'ControlledIdentifiedTermValue_term'], slot_usage={'term': SlotDefinition(name='term', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:ControlledIdentifiedTermValue', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'GeolocationValue': ClassDefinition(name='GeolocationValue', id_prefixes=[], definition_uri='https://w3id.org/nmdc/GeolocationValue', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=\"A normalized value for a location on the earth's surface\", alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[\"what did 'to_str: {latitude} {longitude}' mean?\"], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/core', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=['schema:GeoCoordinates'], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='AttributeValue', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['was_generated_by', 'AttributeValue_type', 'GeolocationValue_latitude', 'GeolocationValue_longitude', 'GeolocationValue_has_raw_value'], slot_usage={'has_raw_value': SlotDefinition(name='has_raw_value', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='The raw value for a geolocation should follow {latitude} {longitude}', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'latitude': SlotDefinition(name='latitude', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'longitude': SlotDefinition(name='longitude', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:GeolocationValue', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'DissolvingActivity': ClassDefinition(name='DissolvingActivity', id_prefixes=[], definition_uri='https://w3id.org/nmdc/DissolvingActivity', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title='Dissolving activity', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/sample_prep', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=['dissolution-activity'], structured_aliases={}, mappings=['CHMO:0002773'], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['dissolution_aided_by', 'dissolution_reagent', 'dissolution_volume', 'dissolved_in', 'DissolvingActivity_material_input', 'DissolvingActivity_material_output'], slot_usage={'material_input': SlotDefinition(name='material_input', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[Example(value='somextract:6', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='MaterialSample', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'material_output': SlotDefinition(name='material_output', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[Example(value='somextract:7', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='MaterialSample', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='CHMO:0002773', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'LabDevice': ClassDefinition(name='LabDevice', id_prefixes=[], definition_uri='https://w3id.org/nmdc/LabDevice', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title='Lab device', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/sample_prep', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['device_type', 'activity_speed', 'activity_temperature', 'activity_time'], slot_usage={}, attributes={}, class_uri='nmdc:LabDevice', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'MaterialContainer': ClassDefinition(name='MaterialContainer', id_prefixes=[], definition_uri='https://w3id.org/nmdc/MaterialContainer', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title='Material container', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/sample_prep', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['container_size', 'container_type'], slot_usage={}, attributes={}, class_uri='nmdc:MaterialContainer', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'MaterialSample': ClassDefinition(name='MaterialSample', id_prefixes=[], definition_uri='https://w3id.org/nmdc/MaterialSample', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title='Material sample', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/sample_prep', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=['Material entity'], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='NamedThing', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['name', 'description', 'alternative_identifiers', 'MaterialSample_id'], slot_usage={'id': SlotDefinition(name='id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=PatternExpression(syntax='{id_nmdc_prefix}:matsm-{id_shoulder}-{id_blade}{id_version}{id_locus}', interpolated=True, partial_match=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:MaterialSample', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'MaterialSamplingActivity': ClassDefinition(name='MaterialSamplingActivity', id_prefixes=[], definition_uri='https://w3id.org/nmdc/MaterialSamplingActivity', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title='Material sampling activity', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/sample_prep', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=['weighing-activity'], structured_aliases={}, mappings=['OBI:0000744'], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['MaterialSamplingActivity_amount_collected', 'MaterialSamplingActivity_collected_into', 'MaterialSamplingActivity_material_output', 'MaterialSamplingActivity_sampling_method'], slot_usage={'amount_collected': SlotDefinition(name='amount_collected', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=['weighing-activity.weight'], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'collected_into': SlotDefinition(name='collected_into', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=['weighing-activity.contanier'], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='MaterialContainer', range_expression=None, enum_range=None, required=None, recommended=None, inlined=True, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'material_output': SlotDefinition(name='material_output', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[Example(value='somextract:6', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=['weighing-activity.id'], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='MaterialSample', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'sampling_method': SlotDefinition(name='sampling_method', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='OBI:0000744', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'ReactionActivity': ClassDefinition(name='ReactionActivity', id_prefixes=[], definition_uri='https://w3id.org/nmdc/ReactionActivity', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title='Reaction activity', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/sample_prep', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=['reaction-activity'], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['ReactionActivity_material_input', 'ReactionActivity_material_output', 'reaction_aided_by', 'reaction_temperature', 'ReactionActivity_reaction_time'], slot_usage={'material_input': SlotDefinition(name='material_input', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='MaterialSample', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'material_output': SlotDefinition(name='material_output', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='MaterialSample', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'reaction_time': SlotDefinition(name='reaction_time', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=['constrain units', 'align with activity_time'], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='QuantityValue', range_expression=None, enum_range=None, required=None, recommended=None, inlined=True, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:ReactionActivity', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'WorkflowExecutionActivity': ClassDefinition(name='WorkflowExecutionActivity', id_prefixes=[], definition_uri='https://w3id.org/nmdc/WorkflowExecutionActivity', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='Represents an instance of an execution of a particular workflow', alt_descriptions={'embl.ena': AltDescription(source='embl.ena', description='An analysis contains secondary analysis results derived from sequence reads (e.g. a genome assembly)')}, title=None, deprecated=None, todos=[], notes=[\"MAM I don't think this is a reasonable override of the global range of Agent, but commenting that line out does not, on its own, fix the conversion to SQLite\", 'inlining of was_associated_with values allows for collections (strings?) of WorkflowExecutionActivity id values'], comments=['Each instance of this (and all other) activities is a distinct run with start and stop times, potentially with different inputs and outputs'], examples=[], in_subset=['workflow subset'], from_schema='https://w3id.org/nmdc/workflow_execution_activity', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=['analysis'], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='Activity', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['name', 'used', 'WorkflowExecutionActivity_execution_resource', 'WorkflowExecutionActivity_git_url', 'WorkflowExecutionActivity_has_input', 'WorkflowExecutionActivity_has_output', 'part_of', 'WorkflowExecutionActivity_type', 'WorkflowExecutionActivity_version', 'WorkflowExecutionActivity_started_at_time', 'WorkflowExecutionActivity_ended_at_time', 'WorkflowExecutionActivity_was_informed_by', 'WorkflowExecutionActivity_id'], slot_usage={'started_at_time': SlotDefinition(name='started_at_time', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'ended_at_time': SlotDefinition(name='ended_at_time', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'git_url': SlotDefinition(name='git_url', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'has_input': SlotDefinition(name='has_input', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'has_output': SlotDefinition(name='has_output', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'was_informed_by': SlotDefinition(name='was_informed_by', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'execution_resource': SlotDefinition(name='execution_resource', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'type': SlotDefinition(name='type', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'version': SlotDefinition(name='version', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'id': SlotDefinition(name='id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=PatternExpression(syntax='{id_nmdc_prefix}:wf-{id_shoulder}-{id_blade}{id_version}{id_locus}', interpolated=True, partial_match=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:WorkflowExecutionActivity', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'MetagenomeAssembly': ClassDefinition(name='MetagenomeAssembly', id_prefixes=[], definition_uri='https://w3id.org/nmdc/MetagenomeAssembly', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A workflow execution activity that converts sequencing reads into an assembled metagenome.', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=['instances of this class may use a de novo assembly strategy in most or all cases relevant to NMDC'], examples=[], in_subset=['workflow subset'], from_schema='https://w3id.org/nmdc/workflow_execution_activity', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='WorkflowExecutionActivity', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['name', 'used', 'WorkflowExecutionActivity_execution_resource', 'WorkflowExecutionActivity_git_url', 'WorkflowExecutionActivity_has_input', 'WorkflowExecutionActivity_has_output', 'part_of', 'WorkflowExecutionActivity_version', 'WorkflowExecutionActivity_started_at_time', 'WorkflowExecutionActivity_ended_at_time', 'WorkflowExecutionActivity_was_informed_by', 'type', 'asm_score', 'scaffolds', 'scaf_logsum', 'scaf_powsum', 'scaf_max', 'scaf_bp', 'scaf_n50', 'scaf_n90', 'scaf_l50', 'scaf_l90', 'scaf_n_gt50k', 'scaf_l_gt50k', 'scaf_pct_gt50k', 'contigs', 'contig_bp', 'ctg_n50', 'ctg_l50', 'ctg_n90', 'ctg_l90', 'ctg_logsum', 'ctg_powsum', 'ctg_max', 'gap_pct', 'gc_std', 'gc_avg', 'num_input_reads', 'num_aligned_reads', 'insdc_assembly_identifiers', 'MetagenomeAssembly_id'], slot_usage={'id': SlotDefinition(name='id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=PatternExpression(syntax='{id_nmdc_prefix}:wfmgas-{id_shoulder}-{id_blade}{id_version}{id_locus}', interpolated=True, partial_match=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:MetagenomeAssembly', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'MetatranscriptomeAssembly': ClassDefinition(name='MetatranscriptomeAssembly', id_prefixes=[], definition_uri='https://w3id.org/nmdc/MetatranscriptomeAssembly', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=['workflow subset'], from_schema='https://w3id.org/nmdc/workflow_execution_activity', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='WorkflowExecutionActivity', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['name', 'used', 'WorkflowExecutionActivity_execution_resource', 'WorkflowExecutionActivity_git_url', 'WorkflowExecutionActivity_has_input', 'WorkflowExecutionActivity_has_output', 'part_of', 'WorkflowExecutionActivity_type', 'WorkflowExecutionActivity_version', 'WorkflowExecutionActivity_started_at_time', 'WorkflowExecutionActivity_ended_at_time', 'WorkflowExecutionActivity_was_informed_by', 'asm_score', 'scaffolds', 'scaf_logsum', 'scaf_powsum', 'scaf_max', 'scaf_bp', 'scaf_n50', 'scaf_n90', 'scaf_l50', 'scaf_l90', 'scaf_n_gt50k', 'scaf_l_gt50k', 'scaf_pct_gt50k', 'contigs', 'contig_bp', 'ctg_n50', 'ctg_l50', 'ctg_n90', 'ctg_l90', 'ctg_logsum', 'ctg_powsum', 'ctg_max', 'gap_pct', 'gc_std', 'gc_avg', 'num_input_reads', 'num_aligned_reads', 'insdc_assembly_identifiers', 'MetatranscriptomeAssembly_id'], slot_usage={'id': SlotDefinition(name='id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=PatternExpression(syntax='{id_nmdc_prefix}:wfmtas-{id_shoulder}-{id_blade}{id_version}{id_locus}', interpolated=True, partial_match=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:MetatranscriptomeAssembly', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'MetagenomeAnnotationActivity': ClassDefinition(name='MetagenomeAnnotationActivity', id_prefixes=[], definition_uri='https://w3id.org/nmdc/MetagenomeAnnotationActivity', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A workflow execution activity that provides functional and structural annotation of assembled metagenome contigs', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=['workflow subset'], from_schema='https://w3id.org/nmdc/workflow_execution_activity', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='WorkflowExecutionActivity', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['name', 'used', 'WorkflowExecutionActivity_execution_resource', 'WorkflowExecutionActivity_git_url', 'WorkflowExecutionActivity_has_input', 'WorkflowExecutionActivity_has_output', 'part_of', 'WorkflowExecutionActivity_version', 'WorkflowExecutionActivity_started_at_time', 'WorkflowExecutionActivity_ended_at_time', 'WorkflowExecutionActivity_was_informed_by', 'type', 'gold_analysis_project_identifiers', 'MetagenomeAnnotationActivity_id'], slot_usage={'id': SlotDefinition(name='id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=PatternExpression(syntax='{id_nmdc_prefix}:wfmgan-{id_shoulder}-{id_blade}{id_version}{id_locus}', interpolated=True, partial_match=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:MetagenomeAnnotationActivity', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'MetatranscriptomeAnnotationActivity': ClassDefinition(name='MetatranscriptomeAnnotationActivity', id_prefixes=[], definition_uri='https://w3id.org/nmdc/MetatranscriptomeAnnotationActivity', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=['workflow subset'], from_schema='https://w3id.org/nmdc/workflow_execution_activity', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='WorkflowExecutionActivity', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['name', 'used', 'WorkflowExecutionActivity_execution_resource', 'WorkflowExecutionActivity_git_url', 'WorkflowExecutionActivity_has_input', 'WorkflowExecutionActivity_has_output', 'part_of', 'WorkflowExecutionActivity_version', 'WorkflowExecutionActivity_started_at_time', 'WorkflowExecutionActivity_ended_at_time', 'WorkflowExecutionActivity_was_informed_by', 'type', 'gold_analysis_project_identifiers', 'MetatranscriptomeAnnotationActivity_id'], slot_usage={'id': SlotDefinition(name='id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=PatternExpression(syntax='{id_nmdc_prefix}:wfmtan-{id_shoulder}-{id_blade}{id_version}{id_locus}', interpolated=True, partial_match=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:MetatranscriptomeAnnotationActivity', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'MetatranscriptomeActivity': ClassDefinition(name='MetatranscriptomeActivity', id_prefixes=[], definition_uri='https://w3id.org/nmdc/MetatranscriptomeActivity', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A metatranscriptome activity that e.g. pools assembly and annotation activity.', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=['workflow subset'], from_schema='https://w3id.org/nmdc/workflow_execution_activity', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='WorkflowExecutionActivity', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['name', 'used', 'WorkflowExecutionActivity_execution_resource', 'WorkflowExecutionActivity_git_url', 'WorkflowExecutionActivity_has_input', 'WorkflowExecutionActivity_has_output', 'part_of', 'WorkflowExecutionActivity_version', 'WorkflowExecutionActivity_started_at_time', 'WorkflowExecutionActivity_ended_at_time', 'WorkflowExecutionActivity_was_informed_by', 'type', 'MetatranscriptomeActivity_id'], slot_usage={'id': SlotDefinition(name='id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=PatternExpression(syntax='{id_nmdc_prefix}:wfmt-{id_shoulder}-{id_blade}{id_version}{id_locus}', interpolated=True, partial_match=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:MetatranscriptomeActivity', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'MagsAnalysisActivity': ClassDefinition(name='MagsAnalysisActivity', id_prefixes=[], definition_uri='https://w3id.org/nmdc/MagsAnalysisActivity', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A workflow execution activity that uses computational binning tools to group assembled contigs into genomes', alt_descriptions={}, title='Metagenome-Assembled Genome analysis activity', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=['workflow subset'], from_schema='https://w3id.org/nmdc/workflow_execution_activity', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='WorkflowExecutionActivity', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['name', 'used', 'WorkflowExecutionActivity_execution_resource', 'WorkflowExecutionActivity_git_url', 'WorkflowExecutionActivity_has_input', 'WorkflowExecutionActivity_has_output', 'part_of', 'WorkflowExecutionActivity_version', 'WorkflowExecutionActivity_started_at_time', 'WorkflowExecutionActivity_ended_at_time', 'WorkflowExecutionActivity_was_informed_by', 'type', 'input_contig_num', 'binned_contig_num', 'too_short_contig_num', 'low_depth_contig_num', 'unbinned_contig_num', 'mags_list', 'MagsAnalysisActivity_id'], slot_usage={'id': SlotDefinition(name='id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=PatternExpression(syntax='{id_nmdc_prefix}:wfmag-{id_shoulder}-{id_blade}{id_version}{id_locus}', interpolated=True, partial_match=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:MagsAnalysisActivity', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'MetagenomeSequencingActivity': ClassDefinition(name='MetagenomeSequencingActivity', id_prefixes=[], definition_uri='https://w3id.org/nmdc/MetagenomeSequencingActivity', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='Initial sequencing activity that precedes any analysis. This activity has output(s) that are the raw sequencing data.', alt_descriptions={}, title='Metagenome sequencing activity', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=['workflow subset'], from_schema='https://w3id.org/nmdc/workflow_execution_activity', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='WorkflowExecutionActivity', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['name', 'used', 'WorkflowExecutionActivity_execution_resource', 'WorkflowExecutionActivity_git_url', 'WorkflowExecutionActivity_has_input', 'WorkflowExecutionActivity_has_output', 'part_of', 'WorkflowExecutionActivity_type', 'WorkflowExecutionActivity_version', 'WorkflowExecutionActivity_started_at_time', 'WorkflowExecutionActivity_ended_at_time', 'WorkflowExecutionActivity_was_informed_by', 'MetagenomeSequencingActivity_id'], slot_usage={'id': SlotDefinition(name='id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=PatternExpression(syntax='{id_nmdc_prefix}:wfmsa-{id_shoulder}-{id_blade}{id_version}{id_locus}', interpolated=True, partial_match=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:MetagenomeSequencingActivity', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'ReadQcAnalysisActivity': ClassDefinition(name='ReadQcAnalysisActivity', id_prefixes=[], definition_uri='https://w3id.org/nmdc/ReadQcAnalysisActivity', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A workflow execution activity that performs quality control on raw Illumina reads including quality trimming, artifact removal, linker trimming, adapter trimming, spike-in removal, and human/cat/dog/mouse/microbe contaminant removal', alt_descriptions={}, title='Read quality control analysis activity', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=['workflow subset'], from_schema='https://w3id.org/nmdc/workflow_execution_activity', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='WorkflowExecutionActivity', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['name', 'used', 'WorkflowExecutionActivity_execution_resource', 'WorkflowExecutionActivity_git_url', 'WorkflowExecutionActivity_has_input', 'WorkflowExecutionActivity_has_output', 'part_of', 'WorkflowExecutionActivity_started_at_time', 'WorkflowExecutionActivity_ended_at_time', 'WorkflowExecutionActivity_was_informed_by', 'type', 'input_read_count', 'input_base_count', 'output_read_count', 'output_base_count', 'input_read_bases', 'output_read_bases', 'version', 'ReadQcAnalysisActivity_id'], slot_usage={'id': SlotDefinition(name='id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=PatternExpression(syntax='{id_nmdc_prefix}:wfrqc-{id_shoulder}-{id_blade}{id_version}{id_locus}', interpolated=True, partial_match=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:ReadQcAnalysisActivity', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'ReadBasedTaxonomyAnalysisActivity': ClassDefinition(name='ReadBasedTaxonomyAnalysisActivity', id_prefixes=[], definition_uri='https://w3id.org/nmdc/ReadBasedTaxonomyAnalysisActivity', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A workflow execution activity that performs taxonomy classification using sequencing reads', alt_descriptions={}, title='Read based analysis activity', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=['workflow subset'], from_schema='https://w3id.org/nmdc/workflow_execution_activity', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='WorkflowExecutionActivity', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['name', 'used', 'WorkflowExecutionActivity_execution_resource', 'WorkflowExecutionActivity_git_url', 'WorkflowExecutionActivity_has_input', 'WorkflowExecutionActivity_has_output', 'part_of', 'WorkflowExecutionActivity_version', 'WorkflowExecutionActivity_started_at_time', 'WorkflowExecutionActivity_ended_at_time', 'WorkflowExecutionActivity_was_informed_by', 'type', 'ReadBasedTaxonomyAnalysisActivity_id'], slot_usage={'id': SlotDefinition(name='id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=PatternExpression(syntax='{id_nmdc_prefix}:wfrbt-{id_shoulder}-{id_blade}{id_version}{id_locus}', interpolated=True, partial_match=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:ReadBasedTaxonomyAnalysisActivity', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'MetabolomicsAnalysisActivity': ClassDefinition(name='MetabolomicsAnalysisActivity', id_prefixes=[], definition_uri='https://w3id.org/nmdc/MetabolomicsAnalysisActivity', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=['workflow subset'], from_schema='https://w3id.org/nmdc/workflow_execution_activity', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='WorkflowExecutionActivity', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['name', 'WorkflowExecutionActivity_execution_resource', 'WorkflowExecutionActivity_git_url', 'WorkflowExecutionActivity_has_input', 'WorkflowExecutionActivity_has_output', 'part_of', 'WorkflowExecutionActivity_type', 'WorkflowExecutionActivity_version', 'WorkflowExecutionActivity_started_at_time', 'WorkflowExecutionActivity_ended_at_time', 'WorkflowExecutionActivity_was_informed_by', 'has_calibration', 'has_metabolite_quantifications', 'MetabolomicsAnalysisActivity_used', 'MetabolomicsAnalysisActivity_id'], slot_usage={'used': SlotDefinition(name='used', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='The instrument used to collect the data used in the analysis', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='Instrument', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'id': SlotDefinition(name='id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=PatternExpression(syntax='{id_nmdc_prefix}:wfmb-{id_shoulder}-{id_blade}{id_version}{id_locus}', interpolated=True, partial_match=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:MetabolomicsAnalysisActivity', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'MetaproteomicsAnalysisActivity': ClassDefinition(name='MetaproteomicsAnalysisActivity', id_prefixes=[], definition_uri='https://w3id.org/nmdc/MetaproteomicsAnalysisActivity', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=['workflow subset'], from_schema='https://w3id.org/nmdc/workflow_execution_activity', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='WorkflowExecutionActivity', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['name', 'WorkflowExecutionActivity_execution_resource', 'WorkflowExecutionActivity_git_url', 'WorkflowExecutionActivity_has_input', 'WorkflowExecutionActivity_has_output', 'part_of', 'WorkflowExecutionActivity_type', 'WorkflowExecutionActivity_version', 'WorkflowExecutionActivity_started_at_time', 'WorkflowExecutionActivity_ended_at_time', 'WorkflowExecutionActivity_was_informed_by', 'has_peptide_quantifications', 'MetaproteomicsAnalysisActivity_used', 'MetaproteomicsAnalysisActivity_id'], slot_usage={'used': SlotDefinition(name='used', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='The instrument used to collect the data used in the analysis', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='Instrument', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'id': SlotDefinition(name='id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=PatternExpression(syntax='{id_nmdc_prefix}:wfmp-{id_shoulder}-{id_blade}{id_version}{id_locus}', interpolated=True, partial_match=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:MetaproteomicsAnalysisActivity', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'NomAnalysisActivity': ClassDefinition(name='NomAnalysisActivity', id_prefixes=[], definition_uri='https://w3id.org/nmdc/NomAnalysisActivity', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=['workflow subset'], from_schema='https://w3id.org/nmdc/workflow_execution_activity', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a='WorkflowExecutionActivity', abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['name', 'WorkflowExecutionActivity_execution_resource', 'WorkflowExecutionActivity_git_url', 'WorkflowExecutionActivity_has_input', 'WorkflowExecutionActivity_has_output', 'part_of', 'WorkflowExecutionActivity_type', 'WorkflowExecutionActivity_version', 'WorkflowExecutionActivity_started_at_time', 'WorkflowExecutionActivity_ended_at_time', 'WorkflowExecutionActivity_was_informed_by', 'has_calibration', 'NomAnalysisActivity_used', 'NomAnalysisActivity_id'], slot_usage={'used': SlotDefinition(name='used', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='The instrument used to collect the data used in the analysis', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range='Instrument', range_expression=None, enum_range=None, required=None, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'id': SlotDefinition(name='id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=PatternExpression(syntax='{id_nmdc_prefix}:wfnom-{id_shoulder}-{id_blade}{id_version}{id_locus}', interpolated=True, partial_match=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:NomAnalysisActivity', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={}), 'Activity': ClassDefinition(name='Activity', id_prefixes=[], definition_uri='https://w3id.org/nmdc/Activity', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='a provence-generating activity', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/prov', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=['prov:Activity'], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, slots=['Activity_id', 'name', 'started_at_time', 'ended_at_time', 'was_informed_by', 'used'], slot_usage={'id': SlotDefinition(name='id', id_prefixes=[], definition_uri=None, local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, singular_name=None, domain=None, slot_uri=None, multivalued=None, inherited=None, readonly=None, ifabsent=None, list_elements_unique=None, list_elements_ordered=None, shared=None, key=None, identifier=None, designates_type=None, alias=None, owner=None, domain_of=[], subproperty_of=None, symmetric=None, reflexive=None, locally_reflexive=None, irreflexive=None, asymmetric=None, transitive=None, inverse=None, is_class_field=None, transitive_form_of=None, reflexive_transitive_form_of=None, role=None, is_usage_slot=None, usage_slot_name=None, relational_role=None, slot_group=None, is_grouping_slot=None, path_rule=None, disjoint_with=[], children_are_mutually_disjoint=None, union_of=[], range=None, range_expression=None, enum_range=None, required=True, recommended=None, inlined=None, inlined_as_list=None, minimum_value=None, maximum_value=None, pattern=None, structured_pattern=PatternExpression(syntax='{id_nmdc_prefix}:act-{id_shoulder}-{id_blade}{id_version}{id_locus}', interpolated=True, partial_match=None, extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=['remove the static pattern once the minter can generate ids that satisfy this structured_pattern and gen-linkml can expand the structured_pattern'], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), unit=None, implicit_prefix=None, value_presence=None, equals_string=None, equals_string_in=[], equals_number=None, equals_expression=None, minimum_cardinality=None, maximum_cardinality=None, has_member=None, all_members=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}, attributes={}, class_uri='nmdc:Activity', subclass_of=None, union_of=[], defining_slots=[], tree_root=None, unique_keys={}, rules=[], classification_rules=[], slot_names_unique=None, represents_relationship=None, disjoint_with=[], children_are_mutually_disjoint=None, any_of=[], exactly_one_of=[], none_of=[], all_of=[], slot_conditions={})}" ; + linkml:enums "{'StatusEnum': EnumDefinition(name='StatusEnum', id_prefixes=[], definition_uri='https://w3id.org/nmdc/StatusEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/nmdc', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'pass': PermissibleValue(text='pass', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'fail': PermissibleValue(text='fail', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'ExtractionTargetEnum': EnumDefinition(name='ExtractionTargetEnum', id_prefixes=[], definition_uri='https://w3id.org/nmdc/ExtractionTargetEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/nmdc', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'DNA': PermissibleValue(text='DNA', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'RNA': PermissibleValue(text='RNA', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'metabolite': PermissibleValue(text='metabolite', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'protein': PermissibleValue(text='protein', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'LibraryTypeEnum': EnumDefinition(name='LibraryTypeEnum', id_prefixes=[], definition_uri='https://w3id.org/nmdc/LibraryTypeEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/nmdc', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'DNA': PermissibleValue(text='DNA', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'RNA': PermissibleValue(text='RNA', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'JgiContTypeEnum': EnumDefinition(name='JgiContTypeEnum', id_prefixes=[], definition_uri='https://w3id.org/nmdc/JgiContTypeEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/nmdc', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'plate': PermissibleValue(text='plate', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'tube': PermissibleValue(text='tube', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'YesNoEnum': EnumDefinition(name='YesNoEnum', id_prefixes=[], definition_uri='https://w3id.org/nmdc/YesNoEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='replaces DnaDnaseEnum and DnaseRnaEnum', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/nmdc', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'no': PermissibleValue(text='no', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'yes': PermissibleValue(text='yes', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'biosample_category_enum': EnumDefinition(name='biosample_category_enum', id_prefixes=[], definition_uri='https://w3id.org/nmdc/BiosampleCategoryEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='Funding-based, sample location-based, or experimental method-based defined categories', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=['Currently, these values can associated with biosamples via the biosample_categories slot', 'They might also be applicable to other classes', 'They are intended to enable metadata search and or filtering, for example in the NMDC data portal, https://data.microbiomedata.org/'], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/nmdc', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=['category tag'], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'LTER': PermissibleValue(text='LTER', description=None, meaning='https://lternet.edu/', unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=\"National Science Foundation's Long Term Ecological Research Network\", deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'SIP': PermissibleValue(text='SIP', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'SFA': PermissibleValue(text='SFA', description='Science Focus Area projects funded through the Department of Energy Office of Science Biological and Environmental Research Program', meaning='https://science.osti.gov/ber/funding-opportunities/laboratory-scientific-focus-area-guidance', unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title='Department of Energy Office of Science Biological and Environmental Research Program Laboratory Science Focus Areas', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'FICUS': PermissibleValue(text='FICUS', description=None, meaning='https://jgi.doe.gov/user-programs/program-info/ficus-overview', unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title='Facilities Integrating Collaborations for User Science', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'NEON': PermissibleValue(text='NEON', description=None, meaning='https://www.neonscience.org', unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=\"National Science Foundation's National Ecological Observatory Network\", deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'file type enum': EnumDefinition(name='file type enum', id_prefixes=[], definition_uri='https://w3id.org/nmdc/FileTypeEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/nmdc', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'Metagenome Raw Reads': PermissibleValue(text='Metagenome Raw Reads', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='^\\\\.fastq(\\\\.gz)?$', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Metagenome Raw Read 1': PermissibleValue(text='Metagenome Raw Read 1', description='Read 1 raw sequencing data, aka forward reads', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='^.+_R1\\\\.fastq(\\\\.gz)?$', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[Example(value='BMI_H25VYBGXH_19S_31WellG1_R1.fastq.gz', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Metagenome Raw Read 2': PermissibleValue(text='Metagenome Raw Read 2', description='Read 2 raw sequencing data, aka reverse reads', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='^.+_R2\\\\.fastq(\\\\.gz)?$', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[Example(value='BMI_H25VYBGXH_19S_31WellG1_R2.fastq.gz', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'FT ICR-MS Analysis Results': PermissibleValue(text='FT ICR-MS Analysis Results', description='FT ICR-MS-based molecular formula assignment results table', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'GC-MS Metabolomics Results': PermissibleValue(text='GC-MS Metabolomics Results', description='GC-MS-based metabolite assignment results table', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Metaproteomics Workflow Statistics': PermissibleValue(text='Metaproteomics Workflow Statistics', description='Aggregate workflow statistics file', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Protein Report': PermissibleValue(text='Protein Report', description='Filtered protein report file', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Peptide Report': PermissibleValue(text='Peptide Report', description='Filtered peptide report file', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Unfiltered Metaproteomics Results': PermissibleValue(text='Unfiltered Metaproteomics Results', description='MSGFjobs and MASIC output file', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Read Count and RPKM': PermissibleValue(text='Read Count and RPKM', description='Annotation read count and RPKM per feature JSON', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'QC non-rRNA R2': PermissibleValue(text='QC non-rRNA R2', description='QC removed rRNA reads (R2) fastq', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'QC non-rRNA R1': PermissibleValue(text='QC non-rRNA R1', description='QC removed rRNA reads (R1) fastq', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Metagenome Bins': PermissibleValue(text='Metagenome Bins', description='Metagenome bin contigs fasta', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Metagenome Bins Compression File': PermissibleValue(text='Metagenome Bins Compression File', description='Compressed file containing all metagenome bins and associated files', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[mag_wf_activity_id]_hqmq_bin.zip', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Metagenome Bins Info File': PermissibleValue(text='Metagenome Bins Info File', description='File containing version information on the binning workflow', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[mag_wf_activity_id]_bin.info', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'CheckM Statistics': PermissibleValue(text='CheckM Statistics', description='CheckM statistics report', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Read Based Analysis Info File': PermissibleValue(text='Read Based Analysis Info File', description='File containing reads based analysis information', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='profiler.info', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'GTDBTK Bacterial Summary': PermissibleValue(text='GTDBTK Bacterial Summary', description='GTDBTK bacterial summary', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'GTDBTK Archaeal Summary': PermissibleValue(text='GTDBTK Archaeal Summary', description='GTDBTK archaeal summary', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'GOTTCHA2 Krona Plot': PermissibleValue(text='GOTTCHA2 Krona Plot', description='GOTTCHA2 krona plot HTML file', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'GOTTCHA2 Classification Report': PermissibleValue(text='GOTTCHA2 Classification Report', description='GOTTCHA2 classification report file', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'GOTTCHA2 Report Full': PermissibleValue(text='GOTTCHA2 Report Full', description='GOTTCHA2 report file', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Kraken2 Krona Plot': PermissibleValue(text='Kraken2 Krona Plot', description='Kraken2 krona plot HTML file', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Centrifuge Krona Plot': PermissibleValue(text='Centrifuge Krona Plot', description='Centrifuge krona plot HTML file', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Centrifuge output report file': PermissibleValue(text='Centrifuge output report file', description='Centrifuge output report file', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Kraken2 Classification Report': PermissibleValue(text='Kraken2 Classification Report', description='Kraken2 output report file', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Kraken2 Taxonomic Classification': PermissibleValue(text='Kraken2 Taxonomic Classification', description='Kraken2 output read classification file', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Centrifuge Classification Report': PermissibleValue(text='Centrifuge Classification Report', description='Centrifuge output report file', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Centrifuge Taxonomic Classification': PermissibleValue(text='Centrifuge Taxonomic Classification', description='Centrifuge output read classification file', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Structural Annotation GFF': PermissibleValue(text='Structural Annotation GFF', description='GFF3 format file with structural annotations', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[GOLD-AP]_structural_annotation.gff', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Structural Annotation Stats Json': PermissibleValue(text='Structural Annotation Stats Json', description='Structural annotations stats json', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[GOLD-AP]_structural_annotation_stats.json', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Functional Annotation GFF': PermissibleValue(text='Functional Annotation GFF', description='GFF3 format file with functional annotations', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[GOLD-AP]_functional_annotation.gff', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Annotation Info File': PermissibleValue(text='Annotation Info File', description='File containing annotation info', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[GOLD-AP]_imgap.info', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Annotation Amino Acid FASTA': PermissibleValue(text='Annotation Amino Acid FASTA', description='FASTA amino acid file for annotated proteins', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[GOLD-AP]_proteins.faa', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Annotation Enzyme Commission': PermissibleValue(text='Annotation Enzyme Commission', description='Tab delimited file for EC annotation', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[GOLD-AP]_ec.tsv', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Annotation KEGG Orthology': PermissibleValue(text='Annotation KEGG Orthology', description='Tab delimited file for KO annotation', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[GOLD-AP]_ko.tsv', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Assembly Info File': PermissibleValue(text='Assembly Info File', description='File containing assembly info', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='README.txt', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Assembly Coverage BAM': PermissibleValue(text='Assembly Coverage BAM', description='Sorted bam file of reads mapping back to the final assembly', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[GOLD-AP]_pairedMapped.sam.gz', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Assembly AGP': PermissibleValue(text='Assembly AGP', description='An AGP format file that describes the assembly', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Assembly Scaffolds': PermissibleValue(text='Assembly Scaffolds', description='Final assembly scaffolds fasta', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[GOLD-AP]_assembly.contigs.fasta', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Assembly Contigs': PermissibleValue(text='Assembly Contigs', description='Final assembly contigs fasta', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='assembly.contigs.fasta', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Assembly Coverage Stats': PermissibleValue(text='Assembly Coverage Stats', description='Assembled contigs coverage information', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[GOLD-AP]_pairedMapped_sorted.bam.cov', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Contig Mapping File': PermissibleValue(text='Contig Mapping File', description='Contig mappings between contigs and scaffolds', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[GOLD-AP]_contig_names_mapping.tsv', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Error Corrected Reads': PermissibleValue(text='Error Corrected Reads', description='Error corrected reads fastq', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='input.corr.fastq.gz', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Filtered Sequencing Reads': PermissibleValue(text='Filtered Sequencing Reads', description='Reads QC result fastq (clean data)', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='/.+?(?=filter)/filter-METAGENOME.fastq.gz ', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Read Filtering Info File': PermissibleValue(text='Read Filtering Info File', description='File containing read filtering information', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[rqc_wf_activity_id]_readsQC.info', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'QC Statistics Extended': PermissibleValue(text='QC Statistics Extended', description='Extended report including methods and results for read filtering', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='/.+?(?=filter)/filtered-report.txt', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'QC Statistics': PermissibleValue(text='QC Statistics', description='Reads QC summary statistics', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[rqc_wf_activity_id]_filterStats2.txt', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'TIGRFam Annotation GFF': PermissibleValue(text='TIGRFam Annotation GFF', description='GFF3 format file with TIGRfam', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[GOLD-AP]_tigrfam.gff', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'CRT Annotation GFF': PermissibleValue(text='CRT Annotation GFF', description='GFF3 format file with CRT', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[GOLD-AP]_crt.gff', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Genemark Annotation GFF': PermissibleValue(text='Genemark Annotation GFF', description='GFF3 format file with Genemark', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[GOLD-AP]_genemark.gff', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Prodigal Annotation GFF': PermissibleValue(text='Prodigal Annotation GFF', description='GFF3 format file with Prodigal', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[GOLD-AP]_prodigal.gff', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'TRNA Annotation GFF': PermissibleValue(text='TRNA Annotation GFF', description='GFF3 format file with TRNA', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[GOLD-AP]_trna.gff', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Misc Annotation GFF': PermissibleValue(text='Misc Annotation GFF', description='GFF3 format file with Misc', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[GOLD-AP]_rfam_misc_bind_misc_feature_regulatory.gff', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'RFAM Annotation GFF': PermissibleValue(text='RFAM Annotation GFF', description='GFF3 format file with RFAM', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[GOLD-AP]_rfam.gff', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'TMRNA Annotation GFF': PermissibleValue(text='TMRNA Annotation GFF', description='GFF3 format file with TMRNA', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[GOLD-AP]_rfam_ncrna_tmrna.gff', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Crispr Terms': PermissibleValue(text='Crispr Terms', description='Crispr Terms', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[GOLD-AP]_crt.crisprs', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Product Names': PermissibleValue(text='Product Names', description='Product names file', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[GOLD-AP]_product_names.tsv', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Gene Phylogeny tsv': PermissibleValue(text='Gene Phylogeny tsv', description='Gene Phylogeny tsv', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[GOLD-AP]_gene_phylogeny.tsv', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Lineage sdb': PermissibleValue(text='Lineage sdb', description='phylogeny at the contig level', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[GOLD-AP].contigLin.assembled.sdb', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Clusters of Orthologous Groups (COG) Annotation GFF': PermissibleValue(text='Clusters of Orthologous Groups (COG) Annotation GFF', description='GFF3 format file with COGs', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[GOLD-AP]_cog.gff', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'KO_EC Annotation GFF': PermissibleValue(text='KO_EC Annotation GFF', description='GFF3 format file with KO_EC', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[GOLD-AP]_ko_ec.gff', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'CATH FunFams (Functional Families) Annotation GFF': PermissibleValue(text='CATH FunFams (Functional Families) Annotation GFF', description='GFF3 format file with CATH FunFams', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[GOLD-AP]_cath_funfam.gff', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'SUPERFam Annotation GFF': PermissibleValue(text='SUPERFam Annotation GFF', description='GFF3 format file with SUPERFam', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[GOLD-AP]_supfam.gff', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'SMART Annotation GFF': PermissibleValue(text='SMART Annotation GFF', description='GFF3 format file with SMART', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[GOLD-AP]_smart.gff', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Pfam Annotation GFF': PermissibleValue(text='Pfam Annotation GFF', description='GFF3 format file with Pfam', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'file_name_pattern': Annotation(tag='file_name_pattern', value='[GOLD-AP]_pfam.gff', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Annotation Statistics': PermissibleValue(text='Annotation Statistics', description='Annotation statistics report', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Direct Infusion FT ICR-MS Raw Data': PermissibleValue(text='Direct Infusion FT ICR-MS Raw Data', description='Direct infusion 21 Tesla Fourier Transform ion cyclotron resonance mass spectrometry raw data acquired in broadband full scan mode', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Raw Compressed Metagenome Interleaved Paired-End Reads': PermissibleValue(text='Raw Compressed Metagenome Interleaved Paired-End Reads', description='Raw sequencing reads from a metagenome that is in interleaved paired-end format and compressed using GNU zip format.', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'credit enum': EnumDefinition(name='credit enum', id_prefixes=[], definition_uri='https://w3id.org/nmdc/CreditEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=['credit enums come from https://casrai.org/credit/'], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/nmdc', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'Conceptualization': PermissibleValue(text='Conceptualization', description='Conceptualization', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Data curation': PermissibleValue(text='Data curation', description='Data curation', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Formal Analysis': PermissibleValue(text='Formal Analysis', description='Formal Analysis', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Funding acquisition': PermissibleValue(text='Funding acquisition', description='Funding acquisition', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Investigation': PermissibleValue(text='Investigation', description='Investigation', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Methodology': PermissibleValue(text='Methodology', description='Methodology', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Project administration': PermissibleValue(text='Project administration', description='Project administration', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Resources': PermissibleValue(text='Resources', description='Resources', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Software': PermissibleValue(text='Software', description='Software', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Supervision': PermissibleValue(text='Supervision', description='Supervision', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Validation': PermissibleValue(text='Validation', description='Validation', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Visualization': PermissibleValue(text='Visualization', description='Visualization', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Writing original draft': PermissibleValue(text='Writing original draft', description='Writing – original draft', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Writing review and editing': PermissibleValue(text='Writing review and editing', description='Writing – review & editing', meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Principal Investigator': PermissibleValue(text='Principal Investigator', description='principal investigator role', meaning='OBI:0000103', unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Submitter': PermissibleValue(text='Submitter', description='the person(s) who enter study and biosample metadata into the NMDC submission portal', meaning='EFO:0001741', unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'processing_institution_enum': EnumDefinition(name='processing_institution_enum', id_prefixes=[], definition_uri='https://w3id.org/nmdc/ProcessingInstitutionEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=['This will become the range of processing_institution.omics processing', 'use ROR meanings like https://ror.org/0168r3w48 for UCSD'], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/nmdc', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'UCSD': PermissibleValue(text='UCSD', description=None, meaning='https://ror.org/0168r3w48', unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title='University of California, San Diego', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'JGI': PermissibleValue(text='JGI', description=None, meaning='https://ror.org/04xm1d337', unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title='Joint Genome Institute', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'EMSL': PermissibleValue(text='EMSL', description=None, meaning='https://ror.org/04rc0xn13', unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title='Environmental Molecular Sciences Laboratory', deprecated=None, todos=[], notes=['replaces Environmental Molecular Science Laboratory', 'replaces Environmental Molecular Sciences Lab'], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Battelle': PermissibleValue(text='Battelle', description=None, meaning='https://ror.org/01h5tnr73', unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title='Battelle Memorial Institute', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'ANL': PermissibleValue(text='ANL', description=None, meaning='https://ror.org/05gvnxz63', unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title='Argonne National Laboratory', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'wall_loc_enum': EnumDefinition(name='wall_loc_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/WallLocEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'north': PermissibleValue(text='north', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'south': PermissibleValue(text='south', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'east': PermissibleValue(text='east', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'west': PermissibleValue(text='west', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'wall_texture_enum': EnumDefinition(name='wall_texture_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/WallTextureEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'crows feet': PermissibleValue(text='crows feet', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'crows-foot stomp': PermissibleValue(text='crows-foot stomp', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), '': PermissibleValue(text='', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'double skip': PermissibleValue(text='double skip', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'hawk and trowel': PermissibleValue(text='hawk and trowel', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'knockdown': PermissibleValue(text='knockdown', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'popcorn': PermissibleValue(text='popcorn', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'orange peel': PermissibleValue(text='orange peel', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'rosebud stomp': PermissibleValue(text='rosebud stomp', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Santa-Fe texture': PermissibleValue(text='Santa-Fe texture', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'skip trowel': PermissibleValue(text='skip trowel', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'smooth': PermissibleValue(text='smooth', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'stomp knockdown': PermissibleValue(text='stomp knockdown', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'swirl': PermissibleValue(text='swirl', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'door_type_metal_enum': EnumDefinition(name='door_type_metal_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/DoorTypeMetalEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'collapsible': PermissibleValue(text='collapsible', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'corrugated steel': PermissibleValue(text='corrugated steel', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'hollow': PermissibleValue(text='hollow', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'rolling shutters': PermissibleValue(text='rolling shutters', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'steel plate': PermissibleValue(text='steel plate', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'water_feat_type_enum': EnumDefinition(name='water_feat_type_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/WaterFeatTypeEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'fountain': PermissibleValue(text='fountain', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'pool': PermissibleValue(text='pool', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'standing feature': PermissibleValue(text='standing feature', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'stream': PermissibleValue(text='stream', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'waterfall': PermissibleValue(text='waterfall', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'organism_count_enum': EnumDefinition(name='organism_count_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/OrganismCountEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'ATP': PermissibleValue(text='ATP', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'MPN': PermissibleValue(text='MPN', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'other': PermissibleValue(text='other', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'growth_habit_enum': EnumDefinition(name='growth_habit_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/GrowthHabitEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'erect': PermissibleValue(text='erect', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'semi-erect': PermissibleValue(text='semi-erect', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'spreading': PermissibleValue(text='spreading', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'prostrate': PermissibleValue(text='prostrate', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'room_samp_pos_enum': EnumDefinition(name='room_samp_pos_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/RoomSampPosEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'north corner': PermissibleValue(text='north corner', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'south corner': PermissibleValue(text='south corner', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'west corner': PermissibleValue(text='west corner', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'east corner': PermissibleValue(text='east corner', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'northeast corner': PermissibleValue(text='northeast corner', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'northwest corner': PermissibleValue(text='northwest corner', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'southeast corner': PermissibleValue(text='southeast corner', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'southwest corner': PermissibleValue(text='southwest corner', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'center': PermissibleValue(text='center', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'rel_samp_loc_enum': EnumDefinition(name='rel_samp_loc_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/RelSampLocEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'edge of car': PermissibleValue(text='edge of car', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'center of car': PermissibleValue(text='center of car', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'under a seat': PermissibleValue(text='under a seat', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'wall_surf_treatment_enum': EnumDefinition(name='wall_surf_treatment_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/WallSurfTreatmentEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'painted': PermissibleValue(text='painted', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'wall paper': PermissibleValue(text='wall paper', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'no treatment': PermissibleValue(text='no treatment', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'paneling': PermissibleValue(text='paneling', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'stucco': PermissibleValue(text='stucco', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'fabric': PermissibleValue(text='fabric', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'train_line_enum': EnumDefinition(name='train_line_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/TrainLineEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'red': PermissibleValue(text='red', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'green': PermissibleValue(text='green', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'orange': PermissibleValue(text='orange', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'window_loc_enum': EnumDefinition(name='window_loc_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/WindowLocEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'north': PermissibleValue(text='north', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'south': PermissibleValue(text='south', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'east': PermissibleValue(text='east', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'west': PermissibleValue(text='west', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'ceil_texture_enum': EnumDefinition(name='ceil_texture_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/CeilTextureEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'crows feet': PermissibleValue(text='crows feet', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'crows-foot stomp': PermissibleValue(text='crows-foot stomp', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'double skip': PermissibleValue(text='double skip', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'hawk and trowel': PermissibleValue(text='hawk and trowel', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'knockdown': PermissibleValue(text='knockdown', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'popcorn': PermissibleValue(text='popcorn', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'orange peel': PermissibleValue(text='orange peel', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'rosebud stomp': PermissibleValue(text='rosebud stomp', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Santa-Fe texture': PermissibleValue(text='Santa-Fe texture', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'skip trowel': PermissibleValue(text='skip trowel', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'smooth': PermissibleValue(text='smooth', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'stomp knockdown': PermissibleValue(text='stomp knockdown', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'swirl': PermissibleValue(text='swirl', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'oxy_stat_samp_enum': EnumDefinition(name='oxy_stat_samp_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/OxyStatSampEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'aerobic': PermissibleValue(text='aerobic', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'anaerobic': PermissibleValue(text='anaerobic', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'other': PermissibleValue(text='other', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'plant_sex_enum': EnumDefinition(name='plant_sex_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/PlantSexEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'Androdioecious': PermissibleValue(text='Androdioecious', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Androecious': PermissibleValue(text='Androecious', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Androgynous': PermissibleValue(text='Androgynous', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Androgynomonoecious': PermissibleValue(text='Androgynomonoecious', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Andromonoecious': PermissibleValue(text='Andromonoecious', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Bisexual': PermissibleValue(text='Bisexual', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Dichogamous': PermissibleValue(text='Dichogamous', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Diclinous': PermissibleValue(text='Diclinous', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Dioecious': PermissibleValue(text='Dioecious', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Gynodioecious': PermissibleValue(text='Gynodioecious', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Gynoecious': PermissibleValue(text='Gynoecious', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Gynomonoecious': PermissibleValue(text='Gynomonoecious', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Hermaphroditic': PermissibleValue(text='Hermaphroditic', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Imperfect': PermissibleValue(text='Imperfect', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Monoclinous': PermissibleValue(text='Monoclinous', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Monoecious': PermissibleValue(text='Monoecious', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Perfect': PermissibleValue(text='Perfect', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Polygamodioecious': PermissibleValue(text='Polygamodioecious', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Polygamomonoecious': PermissibleValue(text='Polygamomonoecious', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Polygamous': PermissibleValue(text='Polygamous', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Protandrous': PermissibleValue(text='Protandrous', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Protogynous': PermissibleValue(text='Protogynous', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Subandroecious': PermissibleValue(text='Subandroecious', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Subdioecious': PermissibleValue(text='Subdioecious', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Subgynoecious': PermissibleValue(text='Subgynoecious', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Synoecious': PermissibleValue(text='Synoecious', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Trimonoecious': PermissibleValue(text='Trimonoecious', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Trioecious': PermissibleValue(text='Trioecious', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Unisexual': PermissibleValue(text='Unisexual', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'ext_wall_orient_enum': EnumDefinition(name='ext_wall_orient_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/ExtWallOrientEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'north': PermissibleValue(text='north', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'south': PermissibleValue(text='south', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'east': PermissibleValue(text='east', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'west': PermissibleValue(text='west', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'northeast': PermissibleValue(text='northeast', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'southeast': PermissibleValue(text='southeast', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'southwest': PermissibleValue(text='southwest', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'northwest': PermissibleValue(text='northwest', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'furniture_enum': EnumDefinition(name='furniture_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/FurnitureEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'cabinet': PermissibleValue(text='cabinet', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'chair': PermissibleValue(text='chair', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'desks': PermissibleValue(text='desks', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'sr_lithology_enum': EnumDefinition(name='sr_lithology_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/SrLithologyEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'Clastic': PermissibleValue(text='Clastic', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Carbonate': PermissibleValue(text='Carbonate', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Coal': PermissibleValue(text='Coal', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Biosilicieous': PermissibleValue(text='Biosilicieous', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'other': PermissibleValue(text='other', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'train_stop_loc_enum': EnumDefinition(name='train_stop_loc_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/TrainStopLocEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'end': PermissibleValue(text='end', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'mid': PermissibleValue(text='mid', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'downtown': PermissibleValue(text='downtown', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'substructure_type_enum': EnumDefinition(name='substructure_type_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/SubstructureTypeEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'crawlspace': PermissibleValue(text='crawlspace', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'slab on grade': PermissibleValue(text='slab on grade', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'basement': PermissibleValue(text='basement', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'ceil_finish_mat_enum': EnumDefinition(name='ceil_finish_mat_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/CeilFinishMatEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'drywall': PermissibleValue(text='drywall', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'mineral fibre': PermissibleValue(text='mineral fibre', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'tiles': PermissibleValue(text='tiles', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'PVC': PermissibleValue(text='PVC', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'plasterboard': PermissibleValue(text='plasterboard', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'metal': PermissibleValue(text='metal', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'fiberglass': PermissibleValue(text='fiberglass', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'stucco': PermissibleValue(text='stucco', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'mineral wool/calcium silicate': PermissibleValue(text='mineral wool/calcium silicate', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'wood': PermissibleValue(text='wood', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'door_type_enum': EnumDefinition(name='door_type_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/DoorTypeEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'composite': PermissibleValue(text='composite', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'metal': PermissibleValue(text='metal', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'wooden': PermissibleValue(text='wooden', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'biol_stat_enum': EnumDefinition(name='biol_stat_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/BiolStatEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'wild': PermissibleValue(text='wild', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'natural': PermissibleValue(text='natural', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'semi-natural': PermissibleValue(text='semi-natural', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'inbred line': PermissibleValue(text='inbred line', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), \"breeder's line\": PermissibleValue(text=\"breeder's line\", description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'hybrid': PermissibleValue(text='hybrid', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'clonal selection': PermissibleValue(text='clonal selection', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'mutant': PermissibleValue(text='mutant', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'window_vert_pos_enum': EnumDefinition(name='window_vert_pos_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/WindowVertPosEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'bottom': PermissibleValue(text='bottom', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'middle': PermissibleValue(text='middle', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'top': PermissibleValue(text='top', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'low': PermissibleValue(text='low', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'high': PermissibleValue(text='high', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'tillage_enum': EnumDefinition(name='tillage_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/TillageEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'drill': PermissibleValue(text='drill', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'cutting disc': PermissibleValue(text='cutting disc', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'ridge till': PermissibleValue(text='ridge till', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'strip tillage': PermissibleValue(text='strip tillage', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'zonal tillage': PermissibleValue(text='zonal tillage', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'chisel': PermissibleValue(text='chisel', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'tined': PermissibleValue(text='tined', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'mouldboard': PermissibleValue(text='mouldboard', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'disc plough': PermissibleValue(text='disc plough', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'build_docs_enum': EnumDefinition(name='build_docs_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/BuildDocsEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'building information model': PermissibleValue(text='building information model', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'commissioning report': PermissibleValue(text='commissioning report', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'complaint logs': PermissibleValue(text='complaint logs', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'contract administration': PermissibleValue(text='contract administration', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'cost estimate': PermissibleValue(text='cost estimate', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'janitorial schedules or logs': PermissibleValue(text='janitorial schedules or logs', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'maintenance plans': PermissibleValue(text='maintenance plans', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'schedule': PermissibleValue(text='schedule', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'sections': PermissibleValue(text='sections', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'shop drawings': PermissibleValue(text='shop drawings', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'submittals': PermissibleValue(text='submittals', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'ventilation system': PermissibleValue(text='ventilation system', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'windows': PermissibleValue(text='windows', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'window_type_enum': EnumDefinition(name='window_type_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/WindowTypeEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'single-hung sash window': PermissibleValue(text='single-hung sash window', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'horizontal sash window': PermissibleValue(text='horizontal sash window', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'fixed window': PermissibleValue(text='fixed window', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'mech_struc_enum': EnumDefinition(name='mech_struc_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/MechStrucEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'subway': PermissibleValue(text='subway', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'coach': PermissibleValue(text='coach', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'carriage': PermissibleValue(text='carriage', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'elevator': PermissibleValue(text='elevator', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'escalator': PermissibleValue(text='escalator', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'boat': PermissibleValue(text='boat', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'train': PermissibleValue(text='train', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'car': PermissibleValue(text='car', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'bus': PermissibleValue(text='bus', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'door_loc_enum': EnumDefinition(name='door_loc_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/DoorLocEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'north': PermissibleValue(text='north', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'south': PermissibleValue(text='south', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'east': PermissibleValue(text='east', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'west': PermissibleValue(text='west', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'shading_device_cond_enum': EnumDefinition(name='shading_device_cond_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/ShadingDeviceCondEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'damaged': PermissibleValue(text='damaged', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'needs repair': PermissibleValue(text='needs repair', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'new': PermissibleValue(text='new', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'rupture': PermissibleValue(text='rupture', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'visible wear': PermissibleValue(text='visible wear', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'samp_floor_enum': EnumDefinition(name='samp_floor_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/SampFloorEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'1st floor': PermissibleValue(text='1st floor', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), '2nd floor': PermissibleValue(text='2nd floor', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'basement': PermissibleValue(text='basement', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'lobby': PermissibleValue(text='lobby', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'samp_collect_point_enum': EnumDefinition(name='samp_collect_point_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/SampCollectPointEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'well': PermissibleValue(text='well', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'test well': PermissibleValue(text='test well', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'drilling rig': PermissibleValue(text='drilling rig', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'wellhead': PermissibleValue(text='wellhead', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'separator': PermissibleValue(text='separator', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'storage tank': PermissibleValue(text='storage tank', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'other': PermissibleValue(text='other', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'sediment_type_enum': EnumDefinition(name='sediment_type_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/SedimentTypeEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'biogenous': PermissibleValue(text='biogenous', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'cosmogenous': PermissibleValue(text='cosmogenous', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'hydrogenous': PermissibleValue(text='hydrogenous', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'lithogenous': PermissibleValue(text='lithogenous', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'indoor_space_enum': EnumDefinition(name='indoor_space_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/IndoorSpaceEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'bedroom': PermissibleValue(text='bedroom', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'office': PermissibleValue(text='office', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'bathroom': PermissibleValue(text='bathroom', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'foyer': PermissibleValue(text='foyer', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'kitchen': PermissibleValue(text='kitchen', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'locker room': PermissibleValue(text='locker room', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'hallway': PermissibleValue(text='hallway', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'elevator': PermissibleValue(text='elevator', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'handidness_enum': EnumDefinition(name='handidness_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/HandidnessEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'ambidexterity': PermissibleValue(text='ambidexterity', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'left handedness': PermissibleValue(text='left handedness', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'mixed-handedness': PermissibleValue(text='mixed-handedness', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'right handedness': PermissibleValue(text='right handedness', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'door_type_wood_enum': EnumDefinition(name='door_type_wood_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/DoorTypeWoodEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'bettened and ledged': PermissibleValue(text='bettened and ledged', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'battened': PermissibleValue(text='battened', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'ledged and braced': PermissibleValue(text='ledged and braced', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'ledged and framed': PermissibleValue(text='ledged and framed', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'ledged, braced and frame': PermissibleValue(text='ledged, braced and frame', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'framed and paneled': PermissibleValue(text='framed and paneled', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'glashed or sash': PermissibleValue(text='glashed or sash', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'flush': PermissibleValue(text='flush', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'louvered': PermissibleValue(text='louvered', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'wire gauged': PermissibleValue(text='wire gauged', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'floor_struc_enum': EnumDefinition(name='floor_struc_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/FloorStrucEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'balcony': PermissibleValue(text='balcony', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'floating floor': PermissibleValue(text='floating floor', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'glass floor': PermissibleValue(text='glass floor', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'raised floor': PermissibleValue(text='raised floor', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'sprung floor': PermissibleValue(text='sprung floor', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'wood-framed': PermissibleValue(text='wood-framed', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'concrete': PermissibleValue(text='concrete', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'floor_cond_enum': EnumDefinition(name='floor_cond_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/FloorCondEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'new': PermissibleValue(text='new', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'visible wear': PermissibleValue(text='visible wear', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'needs repair': PermissibleValue(text='needs repair', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'damaged': PermissibleValue(text='damaged', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'rupture': PermissibleValue(text='rupture', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'drawings_enum': EnumDefinition(name='drawings_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/DrawingsEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'operation': PermissibleValue(text='operation', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'as built': PermissibleValue(text='as built', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'construction': PermissibleValue(text='construction', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'bid': PermissibleValue(text='bid', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'design': PermissibleValue(text='design', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'building navigation map': PermissibleValue(text='building navigation map', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'diagram': PermissibleValue(text='diagram', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'sketch': PermissibleValue(text='sketch', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'room_condt_enum': EnumDefinition(name='room_condt_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/RoomCondtEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'new': PermissibleValue(text='new', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'visible wear': PermissibleValue(text='visible wear', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'needs repair': PermissibleValue(text='needs repair', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'damaged': PermissibleValue(text='damaged', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'rupture': PermissibleValue(text='rupture', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'visible signs of mold/mildew': PermissibleValue(text='visible signs of mold/mildew', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'hc_produced_enum': EnumDefinition(name='hc_produced_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/HcProducedEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'Oil': PermissibleValue(text='Oil', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Gas-Condensate': PermissibleValue(text='Gas-Condensate', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Gas': PermissibleValue(text='Gas', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Bitumen': PermissibleValue(text='Bitumen', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Coalbed Methane': PermissibleValue(text='Coalbed Methane', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'other': PermissibleValue(text='other', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'surf_material_enum': EnumDefinition(name='surf_material_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/SurfMaterialEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'adobe': PermissibleValue(text='adobe', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'carpet': PermissibleValue(text='carpet', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'cinder blocks': PermissibleValue(text='cinder blocks', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'concrete': PermissibleValue(text='concrete', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'hay bales': PermissibleValue(text='hay bales', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'glass': PermissibleValue(text='glass', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'metal': PermissibleValue(text='metal', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'paint': PermissibleValue(text='paint', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'plastic': PermissibleValue(text='plastic', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'stainless steel': PermissibleValue(text='stainless steel', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'stone': PermissibleValue(text='stone', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'stucco': PermissibleValue(text='stucco', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'tile': PermissibleValue(text='tile', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'vinyl': PermissibleValue(text='vinyl', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'wood': PermissibleValue(text='wood', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'vis_media_enum': EnumDefinition(name='vis_media_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/VisMediaEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'photos': PermissibleValue(text='photos', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'videos': PermissibleValue(text='videos', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'commonly of the building': PermissibleValue(text='commonly of the building', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'site context (adjacent buildings, vegetation, terrain, streets)': PermissibleValue(text='site context (adjacent buildings, vegetation, terrain, streets)', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'interiors': PermissibleValue(text='interiors', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'equipment': PermissibleValue(text='equipment', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), '3D scans': PermissibleValue(text='3D scans', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'samp_dis_stage_enum': EnumDefinition(name='samp_dis_stage_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/SampDisStageEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'dissemination': PermissibleValue(text='dissemination', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'growth and reproduction': PermissibleValue(text='growth and reproduction', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'infection': PermissibleValue(text='infection', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'inoculation': PermissibleValue(text='inoculation', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'penetration': PermissibleValue(text='penetration', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'other': PermissibleValue(text='other', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'profile_position_enum': EnumDefinition(name='profile_position_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/ProfilePositionEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'summit': PermissibleValue(text='summit', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'shoulder': PermissibleValue(text='shoulder', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'backslope': PermissibleValue(text='backslope', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'footslope': PermissibleValue(text='footslope', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'toeslope': PermissibleValue(text='toeslope', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'building_setting_enum': EnumDefinition(name='building_setting_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/BuildingSettingEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'urban': PermissibleValue(text='urban', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'suburban': PermissibleValue(text='suburban', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'exurban': PermissibleValue(text='exurban', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'rural': PermissibleValue(text='rural', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'sr_geol_age_enum': EnumDefinition(name='sr_geol_age_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/SrGeolAgeEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'Archean': PermissibleValue(text='Archean', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Cambrian': PermissibleValue(text='Cambrian', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Carboniferous': PermissibleValue(text='Carboniferous', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Cenozoic': PermissibleValue(text='Cenozoic', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Cretaceous': PermissibleValue(text='Cretaceous', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Devonian': PermissibleValue(text='Devonian', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Jurassic': PermissibleValue(text='Jurassic', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Mesozoic': PermissibleValue(text='Mesozoic', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Neogene': PermissibleValue(text='Neogene', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Ordovician': PermissibleValue(text='Ordovician', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Paleogene': PermissibleValue(text='Paleogene', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Paleozoic': PermissibleValue(text='Paleozoic', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Permian': PermissibleValue(text='Permian', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Precambrian': PermissibleValue(text='Precambrian', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Proterozoic': PermissibleValue(text='Proterozoic', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Silurian': PermissibleValue(text='Silurian', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Triassic': PermissibleValue(text='Triassic', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'other': PermissibleValue(text='other', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'samp_capt_status_enum': EnumDefinition(name='samp_capt_status_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/SampCaptStatusEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'active surveillance in response to an outbreak': PermissibleValue(text='active surveillance in response to an outbreak', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'active surveillance not initiated by an outbreak': PermissibleValue(text='active surveillance not initiated by an outbreak', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'farm sample': PermissibleValue(text='farm sample', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'market sample': PermissibleValue(text='market sample', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'other': PermissibleValue(text='other', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'soil_horizon_enum': EnumDefinition(name='soil_horizon_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/SoilHorizonEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'O horizon': PermissibleValue(text='O horizon', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'A horizon': PermissibleValue(text='A horizon', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'E horizon': PermissibleValue(text='E horizon', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'B horizon': PermissibleValue(text='B horizon', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'C horizon': PermissibleValue(text='C horizon', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'R layer': PermissibleValue(text='R layer', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Permafrost': PermissibleValue(text='Permafrost', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'M horizon': PermissibleValue(text='M horizon', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'ext_window_orient_enum': EnumDefinition(name='ext_window_orient_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/ExtWindowOrientEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'north': PermissibleValue(text='north', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'south': PermissibleValue(text='south', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'east': PermissibleValue(text='east', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'west': PermissibleValue(text='west', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'northeast': PermissibleValue(text='northeast', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'southeast': PermissibleValue(text='southeast', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'southwest': PermissibleValue(text='southwest', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'northwest': PermissibleValue(text='northwest', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'heat_deliv_loc_enum': EnumDefinition(name='heat_deliv_loc_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/HeatDelivLocEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'north': PermissibleValue(text='north', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'south': PermissibleValue(text='south', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'east': PermissibleValue(text='east', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'west': PermissibleValue(text='west', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'door_move_enum': EnumDefinition(name='door_move_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/DoorMoveEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'collapsible': PermissibleValue(text='collapsible', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'folding': PermissibleValue(text='folding', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'revolving': PermissibleValue(text='revolving', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'rolling shutter': PermissibleValue(text='rolling shutter', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'sliding': PermissibleValue(text='sliding', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'swinging': PermissibleValue(text='swinging', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'floor_finish_mat_enum': EnumDefinition(name='floor_finish_mat_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/FloorFinishMatEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'tile': PermissibleValue(text='tile', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'wood strip or parquet': PermissibleValue(text='wood strip or parquet', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'carpet': PermissibleValue(text='carpet', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'rug': PermissibleValue(text='rug', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'laminate wood': PermissibleValue(text='laminate wood', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'lineoleum': PermissibleValue(text='lineoleum', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'vinyl composition tile': PermissibleValue(text='vinyl composition tile', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'sheet vinyl': PermissibleValue(text='sheet vinyl', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'stone': PermissibleValue(text='stone', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'bamboo': PermissibleValue(text='bamboo', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'cork': PermissibleValue(text='cork', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'terrazo': PermissibleValue(text='terrazo', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'concrete': PermissibleValue(text='concrete', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'none': PermissibleValue(text='none', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'sealed': PermissibleValue(text='sealed', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'clear finish': PermissibleValue(text='clear finish', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'paint': PermissibleValue(text='paint', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'none or unfinished': PermissibleValue(text='none or unfinished', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'tidal_stage_enum': EnumDefinition(name='tidal_stage_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/TidalStageEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'low tide': PermissibleValue(text='low tide', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'ebb tide': PermissibleValue(text='ebb tide', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'flood tide': PermissibleValue(text='flood tide', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'high tide': PermissibleValue(text='high tide', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'train_stat_loc_enum': EnumDefinition(name='train_stat_loc_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/TrainStatLocEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'south station above ground': PermissibleValue(text='south station above ground', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'south station underground': PermissibleValue(text='south station underground', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'south station amtrak': PermissibleValue(text='south station amtrak', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'forest hills': PermissibleValue(text='forest hills', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'riverside': PermissibleValue(text='riverside', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'lithology_enum': EnumDefinition(name='lithology_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/LithologyEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'Basement': PermissibleValue(text='Basement', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Chalk': PermissibleValue(text='Chalk', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Chert': PermissibleValue(text='Chert', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Coal': PermissibleValue(text='Coal', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Conglomerate': PermissibleValue(text='Conglomerate', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Diatomite': PermissibleValue(text='Diatomite', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Dolomite': PermissibleValue(text='Dolomite', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Limestone': PermissibleValue(text='Limestone', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Sandstone': PermissibleValue(text='Sandstone', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Shale': PermissibleValue(text='Shale', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Siltstone': PermissibleValue(text='Siltstone', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Volcanic': PermissibleValue(text='Volcanic', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'other': PermissibleValue(text='other', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'hcr_geol_age_enum': EnumDefinition(name='hcr_geol_age_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/HcrGeolAgeEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'Archean': PermissibleValue(text='Archean', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Cambrian': PermissibleValue(text='Cambrian', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Carboniferous': PermissibleValue(text='Carboniferous', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Cenozoic': PermissibleValue(text='Cenozoic', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Cretaceous': PermissibleValue(text='Cretaceous', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Devonian': PermissibleValue(text='Devonian', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Jurassic': PermissibleValue(text='Jurassic', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Mesozoic': PermissibleValue(text='Mesozoic', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Neogene': PermissibleValue(text='Neogene', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Ordovician': PermissibleValue(text='Ordovician', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Paleogene': PermissibleValue(text='Paleogene', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Paleozoic': PermissibleValue(text='Paleozoic', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Permian': PermissibleValue(text='Permian', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Precambrian': PermissibleValue(text='Precambrian', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Proterozoic': PermissibleValue(text='Proterozoic', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Silurian': PermissibleValue(text='Silurian', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Triassic': PermissibleValue(text='Triassic', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'other': PermissibleValue(text='other', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'hcr_enum': EnumDefinition(name='hcr_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/HcrEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'Oil Reservoir': PermissibleValue(text='Oil Reservoir', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Gas Reservoir': PermissibleValue(text='Gas Reservoir', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Oil Sand': PermissibleValue(text='Oil Sand', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Coalbed': PermissibleValue(text='Coalbed', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Shale': PermissibleValue(text='Shale', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Tight Oil Reservoir': PermissibleValue(text='Tight Oil Reservoir', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Tight Gas Reservoir': PermissibleValue(text='Tight Gas Reservoir', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'other': PermissibleValue(text='other', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'build_occup_type_enum': EnumDefinition(name='build_occup_type_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/BuildOccupTypeEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'office': PermissibleValue(text='office', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'market': PermissibleValue(text='market', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'restaurant': PermissibleValue(text='restaurant', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'residence': PermissibleValue(text='residence', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'school': PermissibleValue(text='school', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'residential': PermissibleValue(text='residential', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'commercial': PermissibleValue(text='commercial', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'low rise': PermissibleValue(text='low rise', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'high rise': PermissibleValue(text='high rise', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'wood framed': PermissibleValue(text='wood framed', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'health care': PermissibleValue(text='health care', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'airport': PermissibleValue(text='airport', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'sports complex': PermissibleValue(text='sports complex', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'window_cover_enum': EnumDefinition(name='window_cover_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/WindowCoverEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'blinds': PermissibleValue(text='blinds', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'curtains': PermissibleValue(text='curtains', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'none': PermissibleValue(text='none', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'ceil_cond_enum': EnumDefinition(name='ceil_cond_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/CeilCondEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'new': PermissibleValue(text='new', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'visible wear': PermissibleValue(text='visible wear', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'needs repair': PermissibleValue(text='needs repair', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'damaged': PermissibleValue(text='damaged', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'rupture': PermissibleValue(text='rupture', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'plant_growth_med_enum': EnumDefinition(name='plant_growth_med_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/PlantGrowthMedEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'other artificial liquid medium': PermissibleValue(text='other artificial liquid medium', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'other artificial solid medium': PermissibleValue(text='other artificial solid medium', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'peat moss': PermissibleValue(text='peat moss', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'perlite': PermissibleValue(text='perlite', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'pumice': PermissibleValue(text='pumice', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'sand': PermissibleValue(text='sand', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'soil': PermissibleValue(text='soil', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'vermiculite': PermissibleValue(text='vermiculite', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'water': PermissibleValue(text='water', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'samp_md_enum': EnumDefinition(name='samp_md_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/SampMdEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'DF': PermissibleValue(text='DF', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'RT': PermissibleValue(text='RT', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'KB': PermissibleValue(text='KB', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'MSL': PermissibleValue(text='MSL', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'other': PermissibleValue(text='other', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'door_direct_enum': EnumDefinition(name='door_direct_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/DoorDirectEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'inward': PermissibleValue(text='inward', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'outward': PermissibleValue(text='outward', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'sideways': PermissibleValue(text='sideways', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'sr_dep_env_enum': EnumDefinition(name='sr_dep_env_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/SrDepEnvEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'Lacustine': PermissibleValue(text='Lacustine', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Fluvioldeltaic': PermissibleValue(text='Fluvioldeltaic', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Fluviomarine': PermissibleValue(text='Fluviomarine', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Marine': PermissibleValue(text='Marine', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'other': PermissibleValue(text='other', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'window_mat_enum': EnumDefinition(name='window_mat_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/WindowMatEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'clad': PermissibleValue(text='clad', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'fiberglass': PermissibleValue(text='fiberglass', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'metal': PermissibleValue(text='metal', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'vinyl': PermissibleValue(text='vinyl', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'wood': PermissibleValue(text='wood', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'sr_kerog_type_enum': EnumDefinition(name='sr_kerog_type_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/SrKerogTypeEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'Type I': PermissibleValue(text='Type I', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Type II': PermissibleValue(text='Type II', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Type III': PermissibleValue(text='Type III', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Type IV': PermissibleValue(text='Type IV', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'other': PermissibleValue(text='other', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'window_horiz_pos_enum': EnumDefinition(name='window_horiz_pos_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/WindowHorizPosEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'left': PermissibleValue(text='left', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'middle': PermissibleValue(text='middle', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'right': PermissibleValue(text='right', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'wall_finish_mat_enum': EnumDefinition(name='wall_finish_mat_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/WallFinishMatEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'plaster': PermissibleValue(text='plaster', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'gypsum plaster': PermissibleValue(text='gypsum plaster', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'veneer plaster': PermissibleValue(text='veneer plaster', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'gypsum board': PermissibleValue(text='gypsum board', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'tile': PermissibleValue(text='tile', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'terrazzo': PermissibleValue(text='terrazzo', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'stone facing': PermissibleValue(text='stone facing', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'acoustical treatment': PermissibleValue(text='acoustical treatment', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'wood': PermissibleValue(text='wood', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'metal': PermissibleValue(text='metal', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'masonry': PermissibleValue(text='masonry', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'depos_env_enum': EnumDefinition(name='depos_env_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/DeposEnvEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'Continental - Alluvial': PermissibleValue(text='Continental - Alluvial', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Continental - Aeolian': PermissibleValue(text='Continental - Aeolian', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Continental - Fluvial': PermissibleValue(text='Continental - Fluvial', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Continental - Lacustrine': PermissibleValue(text='Continental - Lacustrine', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Transitional - Deltaic': PermissibleValue(text='Transitional - Deltaic', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Transitional - Tidal': PermissibleValue(text='Transitional - Tidal', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Transitional - Lagoonal': PermissibleValue(text='Transitional - Lagoonal', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Transitional - Beach': PermissibleValue(text='Transitional - Beach', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Transitional - Lake': PermissibleValue(text='Transitional - Lake', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Marine - Shallow': PermissibleValue(text='Marine - Shallow', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Marine - Deep': PermissibleValue(text='Marine - Deep', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Marine - Reef': PermissibleValue(text='Marine - Reef', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Other - Evaporite': PermissibleValue(text='Other - Evaporite', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Other - Glacial': PermissibleValue(text='Other - Glacial', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Other - Volcanic': PermissibleValue(text='Other - Volcanic', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'other': PermissibleValue(text='other', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'indoor_surf_enum': EnumDefinition(name='indoor_surf_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/IndoorSurfEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'cabinet': PermissibleValue(text='cabinet', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'ceiling': PermissibleValue(text='ceiling', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'counter top': PermissibleValue(text='counter top', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'door': PermissibleValue(text='door', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'shelving': PermissibleValue(text='shelving', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'vent cover': PermissibleValue(text='vent cover', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'window': PermissibleValue(text='window', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'wall': PermissibleValue(text='wall', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'floor_water_mold_enum': EnumDefinition(name='floor_water_mold_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/FloorWaterMoldEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'mold odor': PermissibleValue(text='mold odor', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'wet floor': PermissibleValue(text='wet floor', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'water stains': PermissibleValue(text='water stains', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'wall discoloration': PermissibleValue(text='wall discoloration', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'floor discoloration': PermissibleValue(text='floor discoloration', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'ceiling discoloration': PermissibleValue(text='ceiling discoloration', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'peeling paint or wallpaper': PermissibleValue(text='peeling paint or wallpaper', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'bulging walls': PermissibleValue(text='bulging walls', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'condensation': PermissibleValue(text='condensation', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'freq_clean_enum': EnumDefinition(name='freq_clean_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/FreqCleanEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'Daily': PermissibleValue(text='Daily', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Weekly': PermissibleValue(text='Weekly', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Monthly': PermissibleValue(text='Monthly', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Quarterly': PermissibleValue(text='Quarterly', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Annually': PermissibleValue(text='Annually', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'other': PermissibleValue(text='other', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'heat_cool_type_enum': EnumDefinition(name='heat_cool_type_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/HeatCoolTypeEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'radiant system': PermissibleValue(text='radiant system', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'heat pump': PermissibleValue(text='heat pump', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'forced air system': PermissibleValue(text='forced air system', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'steam forced heat': PermissibleValue(text='steam forced heat', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'wood stove': PermissibleValue(text='wood stove', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'door_comp_type_enum': EnumDefinition(name='door_comp_type_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/DoorCompTypeEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'metal covered': PermissibleValue(text='metal covered', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'revolving': PermissibleValue(text='revolving', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'sliding': PermissibleValue(text='sliding', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'telescopic': PermissibleValue(text='telescopic', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'window_cond_enum': EnumDefinition(name='window_cond_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/WindowCondEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'damaged': PermissibleValue(text='damaged', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'needs repair': PermissibleValue(text='needs repair', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'new': PermissibleValue(text='new', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'rupture': PermissibleValue(text='rupture', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'visible wear': PermissibleValue(text='visible wear', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'ceil_type_enum': EnumDefinition(name='ceil_type_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/CeilTypeEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'cathedral': PermissibleValue(text='cathedral', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'dropped': PermissibleValue(text='dropped', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'concave': PermissibleValue(text='concave', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'barrel-shaped': PermissibleValue(text='barrel-shaped', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'coffered': PermissibleValue(text='coffered', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'cove': PermissibleValue(text='cove', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'stretched': PermissibleValue(text='stretched', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'biotic_relationship_enum': EnumDefinition(name='biotic_relationship_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/BioticRelationshipEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'free living': PermissibleValue(text='free living', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'parasite': PermissibleValue(text='parasite', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'commensal': PermissibleValue(text='commensal', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'symbiont': PermissibleValue(text='symbiont', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'samp_subtype_enum': EnumDefinition(name='samp_subtype_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/SampSubtypeEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'oil phase': PermissibleValue(text='oil phase', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'water phase': PermissibleValue(text='water phase', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'biofilm': PermissibleValue(text='biofilm', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'not applicable': PermissibleValue(text='not applicable', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'other': PermissibleValue(text='other', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'shading_device_type_enum': EnumDefinition(name='shading_device_type_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/ShadingDeviceTypeEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'bahama shutters': PermissibleValue(text='bahama shutters', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'exterior roll blind': PermissibleValue(text='exterior roll blind', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'gambrel awning': PermissibleValue(text='gambrel awning', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'hood awning': PermissibleValue(text='hood awning', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'porchroller awning': PermissibleValue(text='porchroller awning', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'sarasota shutters': PermissibleValue(text='sarasota shutters', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'slatted aluminum': PermissibleValue(text='slatted aluminum', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'solid aluminum awning': PermissibleValue(text='solid aluminum awning', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'sun screen': PermissibleValue(text='sun screen', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'tree': PermissibleValue(text='tree', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'trellis': PermissibleValue(text='trellis', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'venetian awning': PermissibleValue(text='venetian awning', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'specific_enum': EnumDefinition(name='specific_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/SpecificEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'operation': PermissibleValue(text='operation', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'as built': PermissibleValue(text='as built', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'construction': PermissibleValue(text='construction', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'bid': PermissibleValue(text='bid', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'design': PermissibleValue(text='design', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'photos': PermissibleValue(text='photos', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'season_use_enum': EnumDefinition(name='season_use_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/SeasonUseEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'Spring': PermissibleValue(text='Spring', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Summer': PermissibleValue(text='Summer', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Fall': PermissibleValue(text='Fall', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Winter': PermissibleValue(text='Winter', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'door_cond_enum': EnumDefinition(name='door_cond_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/DoorCondEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'damaged': PermissibleValue(text='damaged', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'needs repair': PermissibleValue(text='needs repair', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'new': PermissibleValue(text='new', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'rupture': PermissibleValue(text='rupture', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'visible wear': PermissibleValue(text='visible wear', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'quad_pos_enum': EnumDefinition(name='quad_pos_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/QuadPosEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'North side': PermissibleValue(text='North side', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'West side': PermissibleValue(text='West side', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'South side': PermissibleValue(text='South side', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'East side': PermissibleValue(text='East side', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'samp_weather_enum': EnumDefinition(name='samp_weather_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/SampWeatherEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'clear sky': PermissibleValue(text='clear sky', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'cloudy': PermissibleValue(text='cloudy', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'foggy': PermissibleValue(text='foggy', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'hail': PermissibleValue(text='hail', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'rain': PermissibleValue(text='rain', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'snow': PermissibleValue(text='snow', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'sleet': PermissibleValue(text='sleet', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'sunny': PermissibleValue(text='sunny', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'windy': PermissibleValue(text='windy', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'room_connected_enum': EnumDefinition(name='room_connected_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/RoomConnectedEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'attic': PermissibleValue(text='attic', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'bathroom': PermissibleValue(text='bathroom', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'closet': PermissibleValue(text='closet', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'conference room': PermissibleValue(text='conference room', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'elevator': PermissibleValue(text='elevator', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'examining room': PermissibleValue(text='examining room', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'hallway': PermissibleValue(text='hallway', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'kitchen': PermissibleValue(text='kitchen', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'mail room': PermissibleValue(text='mail room', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'office': PermissibleValue(text='office', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'stairwell': PermissibleValue(text='stairwell', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'gender_restroom_enum': EnumDefinition(name='gender_restroom_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/GenderRestroomEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'all gender': PermissibleValue(text='all gender', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'female': PermissibleValue(text='female', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'gender neurtral': PermissibleValue(text='gender neurtral', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'male': PermissibleValue(text='male', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'male and female': PermissibleValue(text='male and female', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'unisex': PermissibleValue(text='unisex', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'host_sex_enum': EnumDefinition(name='host_sex_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/HostSexEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'female': PermissibleValue(text='female', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'hermaphrodite': PermissibleValue(text='hermaphrodite', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'male': PermissibleValue(text='male', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'neuter': PermissibleValue(text='neuter', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'weekday_enum': EnumDefinition(name='weekday_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/WeekdayEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'Monday': PermissibleValue(text='Monday', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Tuesday': PermissibleValue(text='Tuesday', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Wednesday': PermissibleValue(text='Wednesday', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Thursday': PermissibleValue(text='Thursday', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Friday': PermissibleValue(text='Friday', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Saturday': PermissibleValue(text='Saturday', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Sunday': PermissibleValue(text='Sunday', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'surf_air_cont_enum': EnumDefinition(name='surf_air_cont_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/SurfAirContEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'dust': PermissibleValue(text='dust', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'organic matter': PermissibleValue(text='organic matter', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'particulate matter': PermissibleValue(text='particulate matter', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'volatile organic compounds': PermissibleValue(text='volatile organic compounds', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'biological contaminants': PermissibleValue(text='biological contaminants', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'radon': PermissibleValue(text='radon', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'nutrients': PermissibleValue(text='nutrients', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'biocides': PermissibleValue(text='biocides', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'filter_type_enum': EnumDefinition(name='filter_type_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/FilterTypeEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'particulate air filter': PermissibleValue(text='particulate air filter', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'chemical air filter': PermissibleValue(text='chemical air filter', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'low-MERV pleated media': PermissibleValue(text='low-MERV pleated media', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'HEPA': PermissibleValue(text='HEPA', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'electrostatic': PermissibleValue(text='electrostatic', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'gas-phase or ultraviolet air treatments': PermissibleValue(text='gas-phase or ultraviolet air treatments', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'light_type_enum': EnumDefinition(name='light_type_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/LightTypeEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'natural light': PermissibleValue(text='natural light', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'electric light': PermissibleValue(text='electric light', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'desk lamp': PermissibleValue(text='desk lamp', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'flourescent lights': PermissibleValue(text='flourescent lights', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'none': PermissibleValue(text='none', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'arch_struc_enum': EnumDefinition(name='arch_struc_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/ArchStrucEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'building': PermissibleValue(text='building', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'shed': PermissibleValue(text='shed', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'home': PermissibleValue(text='home', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'wall_const_type_enum': EnumDefinition(name='wall_const_type_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/WallConstTypeEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'frame construction': PermissibleValue(text='frame construction', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'joisted masonry': PermissibleValue(text='joisted masonry', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'light noncombustible': PermissibleValue(text='light noncombustible', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'masonry noncombustible': PermissibleValue(text='masonry noncombustible', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'modified fire resistive': PermissibleValue(text='modified fire resistive', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'fire resistive': PermissibleValue(text='fire resistive', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'occup_document_enum': EnumDefinition(name='occup_document_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/OccupDocumentEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'automated count': PermissibleValue(text='automated count', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'estimate': PermissibleValue(text='estimate', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'manual count': PermissibleValue(text='manual count', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'videos': PermissibleValue(text='videos', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'drainage_class_enum': EnumDefinition(name='drainage_class_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/DrainageClassEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'very poorly': PermissibleValue(text='very poorly', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'poorly': PermissibleValue(text='poorly', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'somewhat poorly': PermissibleValue(text='somewhat poorly', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'moderately well': PermissibleValue(text='moderately well', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'well': PermissibleValue(text='well', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'excessively drained': PermissibleValue(text='excessively drained', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'room_type_enum': EnumDefinition(name='room_type_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/RoomTypeEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'attic': PermissibleValue(text='attic', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'bathroom': PermissibleValue(text='bathroom', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'closet': PermissibleValue(text='closet', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'conference room': PermissibleValue(text='conference room', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'elevator': PermissibleValue(text='elevator', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'examining room': PermissibleValue(text='examining room', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'hallway': PermissibleValue(text='hallway', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'kitchen': PermissibleValue(text='kitchen', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'mail room': PermissibleValue(text='mail room', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'private office': PermissibleValue(text='private office', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'open office': PermissibleValue(text='open office', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'stairwell': PermissibleValue(text='stairwell', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), ',restroom': PermissibleValue(text=',restroom', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'lobby': PermissibleValue(text='lobby', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'vestibule': PermissibleValue(text='vestibule', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'mechanical or electrical room': PermissibleValue(text='mechanical or electrical room', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'data center': PermissibleValue(text='data center', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'laboratory_wet': PermissibleValue(text='laboratory_wet', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'laboratory_dry': PermissibleValue(text='laboratory_dry', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'gymnasium': PermissibleValue(text='gymnasium', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'natatorium': PermissibleValue(text='natatorium', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'auditorium': PermissibleValue(text='auditorium', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'lockers': PermissibleValue(text='lockers', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'cafe': PermissibleValue(text='cafe', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'warehouse': PermissibleValue(text='warehouse', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'room_loc_enum': EnumDefinition(name='room_loc_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/RoomLocEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'corner room': PermissibleValue(text='corner room', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'interior room': PermissibleValue(text='interior room', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'exterior wall': PermissibleValue(text='exterior wall', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'int_wall_cond_enum': EnumDefinition(name='int_wall_cond_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/IntWallCondEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'new': PermissibleValue(text='new', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'visible wear': PermissibleValue(text='visible wear', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'needs repair': PermissibleValue(text='needs repair', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'damaged': PermissibleValue(text='damaged', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'rupture': PermissibleValue(text='rupture', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'cur_land_use_enum': EnumDefinition(name='cur_land_use_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/CurLandUseEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'badlands': PermissibleValue(text='badlands', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'cities': PermissibleValue(text='cities', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'conifers': PermissibleValue(text='conifers', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'originally': Annotation(tag='originally', value='conifers (e.g. pine,spruce,fir,cypress)', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[Example(value='cypress', description=None, object=None), Example(value='fir', description=None, object=None), Example(value='pine', description=None, object=None), Example(value='spruce', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'crop trees': PermissibleValue(text='crop trees', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'originally': Annotation(tag='originally', value='crop trees (nuts,fruit,christmas trees,nursery trees)', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[Example(value='christmas trees', description=None, object=None), Example(value='fruit', description=None, object=None), Example(value='nursery trees', description=None, object=None), Example(value='nuts', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'farmstead': PermissibleValue(text='farmstead', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'gravel': PermissibleValue(text='gravel', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'hardwoods': PermissibleValue(text='hardwoods', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'originally': Annotation(tag='originally', value='hardwoods (e.g. oak,hickory,elm,aspen)', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[Example(value='aspen', description=None, object=None), Example(value='elm', description=None, object=None), Example(value='hickory', description=None, object=None), Example(value='oak', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'hayland': PermissibleValue(text='hayland', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'horticultural plants': PermissibleValue(text='horticultural plants', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'originally': Annotation(tag='originally', value='horticultural plants (e.g. tulips)', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[Example(value='tulips', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'industrial areas': PermissibleValue(text='industrial areas', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'intermixed hardwood and conifers': PermissibleValue(text='intermixed hardwood and conifers', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'marshlands': PermissibleValue(text='marshlands', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'originally': Annotation(tag='originally', value='marshlands (grass,sedges,rushes)', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[Example(value='grass', description=None, object=None), Example(value='rushes', description=None, object=None), Example(value='sedgees', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'meadows': PermissibleValue(text='meadows', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'originally': Annotation(tag='originally', value='meadows (grasses,alfalfa,fescue,bromegrass,timothy)', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[Example(value='alfalfa', description=None, object=None), Example(value='bromegrass', description=None, object=None), Example(value='fescue', description=None, object=None), Example(value='grasses', description=None, object=None), Example(value='timothy', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'mines/quarries': PermissibleValue(text='mines/quarries', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'mudflats': PermissibleValue(text='mudflats', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'oil waste areas': PermissibleValue(text='oil waste areas', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'pastureland': PermissibleValue(text='pastureland', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'originally': Annotation(tag='originally', value='pastureland (grasslands used for livestock grazing)', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=['grasslands used for livestock grazing'], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'permanent snow or ice': PermissibleValue(text='permanent snow or ice', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'rainforest': PermissibleValue(text='rainforest', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'originally': Annotation(tag='originally', value='rainforest (evergreen forest receiving greater than 406 cm annual rainfall)', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=['evergreen forest receiving greater than 406 cm annual rainfall'], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'rangeland': PermissibleValue(text='rangeland', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'roads/railroads': PermissibleValue(text='roads/railroads', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'rock': PermissibleValue(text='rock', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'row crops': PermissibleValue(text='row crops', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'saline seeps': PermissibleValue(text='saline seeps', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'salt flats': PermissibleValue(text='salt flats', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'sand': PermissibleValue(text='sand', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'shrub crops': PermissibleValue(text='shrub crops', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'originally': Annotation(tag='originally', value='shrub crops (blueberries,nursery ornamentals,filberts)', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[Example(value='blueberries', description=None, object=None), Example(value='filberts', description=None, object=None), Example(value='nursery ornamentals', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'shrub land': PermissibleValue(text='shrub land', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'originally': Annotation(tag='originally', value='shrub land (e.g. mesquite,sage-brush,creosote bush,shrub oak,eucalyptus)', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[Example(value='creosote bush', description=None, object=None), Example(value='eucalyptus', description=None, object=None), Example(value='mesquite', description=None, object=None), Example(value='sage-brush', description=None, object=None), Example(value='shrub oak', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'small grains': PermissibleValue(text='small grains', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'successional shrub land': PermissibleValue(text='successional shrub land', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'originally': Annotation(tag='originally', value='successional shrub land (tree saplings,hazels,sumacs,chokecherry,shrub dogwoods,blackberries)', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[Example(value='blackberries', description=None, object=None), Example(value='chokecherry', description=None, object=None), Example(value='hazels', description=None, object=None), Example(value='shrub dogwoods', description=None, object=None), Example(value='sumacs', description=None, object=None), Example(value='tree saplings', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'swamp': PermissibleValue(text='swamp', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'originally': Annotation(tag='originally', value='swamp (permanent or semi-permanent water body dominated by woody plants)', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=['permanent or semi-permanent water body dominated by woody plants'], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'tropical': PermissibleValue(text='tropical', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'originally': Annotation(tag='originally', value='tropical (e.g. mangrove,palms)', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[Example(value='mangrove', description=None, object=None), Example(value='palms', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'tundra': PermissibleValue(text='tundra', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'originally': Annotation(tag='originally', value='tundra (mosses,lichens)', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[Example(value='lichens', description=None, object=None), Example(value='mosses', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'vegetable crops': PermissibleValue(text='vegetable crops', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'vine crops': PermissibleValue(text='vine crops', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={'originally': Annotation(tag='originally', value='vine crops (grapes)', extensions={}, annotations={})}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[Example(value='grapes', description=None, object=None)], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'door_mat_enum': EnumDefinition(name='door_mat_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/DoorMatEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'aluminum': PermissibleValue(text='aluminum', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'cellular PVC': PermissibleValue(text='cellular PVC', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'engineered plastic': PermissibleValue(text='engineered plastic', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'fiberboard': PermissibleValue(text='fiberboard', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'fiberglass': PermissibleValue(text='fiberglass', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'metal': PermissibleValue(text='metal', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'thermoplastic alloy': PermissibleValue(text='thermoplastic alloy', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'vinyl': PermissibleValue(text='vinyl', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'wood': PermissibleValue(text='wood', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'wood/plastic composite': PermissibleValue(text='wood/plastic composite', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'fao_class_enum': EnumDefinition(name='fao_class_enum', id_prefixes=[], definition_uri='https://w3id.org/mixs/FaoClassEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'Acrisols': PermissibleValue(text='Acrisols', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Andosols': PermissibleValue(text='Andosols', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Arenosols': PermissibleValue(text='Arenosols', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Cambisols': PermissibleValue(text='Cambisols', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Chernozems': PermissibleValue(text='Chernozems', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Ferralsols': PermissibleValue(text='Ferralsols', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Fluvisols': PermissibleValue(text='Fluvisols', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Gleysols': PermissibleValue(text='Gleysols', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Greyzems': PermissibleValue(text='Greyzems', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Gypsisols': PermissibleValue(text='Gypsisols', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Histosols': PermissibleValue(text='Histosols', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Kastanozems': PermissibleValue(text='Kastanozems', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Lithosols': PermissibleValue(text='Lithosols', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Luvisols': PermissibleValue(text='Luvisols', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Nitosols': PermissibleValue(text='Nitosols', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Phaeozems': PermissibleValue(text='Phaeozems', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Planosols': PermissibleValue(text='Planosols', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Podzols': PermissibleValue(text='Podzols', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Podzoluvisols': PermissibleValue(text='Podzoluvisols', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Rankers': PermissibleValue(text='Rankers', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Regosols': PermissibleValue(text='Regosols', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Rendzinas': PermissibleValue(text='Rendzinas', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Solonchaks': PermissibleValue(text='Solonchaks', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Solonetz': PermissibleValue(text='Solonetz', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Vertisols': PermissibleValue(text='Vertisols', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Yermosols': PermissibleValue(text='Yermosols', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'sample_type_enum': EnumDefinition(name='sample_type_enum', id_prefixes=[], definition_uri='https://w3id.org/nmdc/SampleTypeEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/portal/emsl', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'soil': PermissibleValue(text='soil', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'water_extract_soil': PermissibleValue(text='water_extract_soil', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'dna_sample_format_enum': EnumDefinition(name='dna_sample_format_enum', id_prefixes=[], definition_uri='https://w3id.org/nmdc/DnaSampleFormatEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/portal/jgi_metagenomics', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'10 mM Tris-HCl': PermissibleValue(text='10 mM Tris-HCl', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'DNAStable': PermissibleValue(text='DNAStable', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Ethanol': PermissibleValue(text='Ethanol', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Low EDTA TE': PermissibleValue(text='Low EDTA TE', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'MDA reaction buffer': PermissibleValue(text='MDA reaction buffer', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'PBS': PermissibleValue(text='PBS', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Pellet': PermissibleValue(text='Pellet', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'RNAStable': PermissibleValue(text='RNAStable', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'TE': PermissibleValue(text='TE', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Water': PermissibleValue(text='Water', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Gentegra-DNA': PermissibleValue(text='Gentegra-DNA', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Gentegra-RNA': PermissibleValue(text='Gentegra-RNA', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'rna_sample_format_enum': EnumDefinition(name='rna_sample_format_enum', id_prefixes=[], definition_uri='https://w3id.org/nmdc/RnaSampleFormatEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/portal/jgi_metatranscriptomics', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'10 mM Tris-HCl': PermissibleValue(text='10 mM Tris-HCl', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'DNAStable': PermissibleValue(text='DNAStable', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Ethanol': PermissibleValue(text='Ethanol', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Low EDTA TE': PermissibleValue(text='Low EDTA TE', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'MDA reaction buffer': PermissibleValue(text='MDA reaction buffer', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'PBS': PermissibleValue(text='PBS', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Pellet': PermissibleValue(text='Pellet', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'RNAStable': PermissibleValue(text='RNAStable', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'TE': PermissibleValue(text='TE', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Water': PermissibleValue(text='Water', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Gentegra-DNA': PermissibleValue(text='Gentegra-DNA', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'Gentegra-RNA': PermissibleValue(text='Gentegra-RNA', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'analysis_type_enum': EnumDefinition(name='analysis_type_enum', id_prefixes=[], definition_uri='https://w3id.org/nmdc/AnalysisTypeEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/portal/sample_id', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'metabolomics': PermissibleValue(text='metabolomics', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'metagenomics': PermissibleValue(text='metagenomics', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'metaproteomics': PermissibleValue(text='metaproteomics', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'metatranscriptomics': PermissibleValue(text='metatranscriptomics', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'natural organic matter': PermissibleValue(text='natural organic matter', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'ContainerTypeEnum': EnumDefinition(name='ContainerTypeEnum', id_prefixes=[], definition_uri='https://w3id.org/nmdc/ContainerTypeEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title='Container type enumeration', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/sample_prep', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'screw_top_conical': PermissibleValue(text='screw_top_conical', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title='Screw top conical tube', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=['falcon tube'], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'DeviceTypeEnum': EnumDefinition(name='DeviceTypeEnum', id_prefixes=[], definition_uri='https://w3id.org/nmdc/DeviceTypeEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title='Shaker type enumeration', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/sample_prep', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'orbital_shaker': PermissibleValue(text='orbital_shaker', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title='Orbital shaker', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'thermomixer': PermissibleValue(text='thermomixer', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title='Thermomixer', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'SamplingMethodEnum': EnumDefinition(name='SamplingMethodEnum', id_prefixes=[], definition_uri='https://w3id.org/nmdc/SamplingMethodEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/sample_prep', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'weighing': PermissibleValue(text='weighing', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title='Weighing', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[]), 'SolventEnum': EnumDefinition(name='SolventEnum', id_prefixes=[], definition_uri='https://w3id.org/nmdc/SolventEnum', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title='Solvent enumeration', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/sample_prep', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, is_a=None, abstract=None, mixin=None, mixins=[], apply_to=[], values_from=[], string_serialization=None, enum_uri=None, code_set=None, code_set_tag=None, code_set_version=None, pv_formula=None, permissible_values={'deionized_water': PermissibleValue(text='deionized_water', description=None, meaning=None, unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title='Deionized water', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=['CHEBI:15377'], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'methanol': PermissibleValue(text='methanol', description=None, meaning='CHEBI:17790', unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title='Methanol', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None), 'chloroform': PermissibleValue(text='chloroform', description=None, meaning='CHEBI:35255', unit=None, is_a=None, mixins=[], extensions={}, annotations={}, alt_descriptions={}, title='Chloroform', deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema=None, imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None)}, include=[], minus=[], inherits=[], reachable_from=None, matches=None, concepts=[])}" ; + linkml:id "https://w3id.org/nmdc/nmdc" ; + linkml:imports "annotation", + "basic_slots", + "core", + "external_identifiers", + "linkml:types", + "mixs", + "portal/emsl", + "portal/jgi_metagenomics", + "portal/jgi_metatranscriptomics", + "portal/mixs_inspired", + "portal/sample_id", + "prov", + "sample_prep", + "workflow_execution_activity" ; + linkml:types "{'bytes': TypeDefinition(name='bytes', id_prefixes=[], definition_uri='https://w3id.org/nmdc/Bytes', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='An integer value that corresponds to a size in bytes', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/core', imported_from=None, source=None, in_language=None, see_also=['UO:0000233'], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='int', uri='xsd:long', repr=None, union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'decimal degree': TypeDefinition(name='decimal degree', id_prefixes=[], definition_uri='https://w3id.org/nmdc/DecimalDegree', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A decimal degree expresses latitude or longitude as decimal fractions.', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/core', imported_from=None, source=None, in_language=None, see_also=['https://en.wikipedia.org/wiki/Decimal_degrees'], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='float', uri='xsd:decimal', repr=None, union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'language code': TypeDefinition(name='language code', id_prefixes=[], definition_uri='https://w3id.org/nmdc/LanguageCode', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A language code conforming to ISO_639-1', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/core', imported_from=None, source=None, in_language=None, see_also=['https://en.wikipedia.org/wiki/ISO_639-1'], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='str', uri='xsd:language', repr=None, union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'unit': TypeDefinition(name='unit', id_prefixes=[], definition_uri='https://w3id.org/nmdc/Unit', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description=None, alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/core', imported_from=None, source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=['qud:Unit', 'UO:0000000'], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='str', uri='xsd:string', repr=None, union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'external identifier': TypeDefinition(name='external identifier', id_prefixes=[], definition_uri='https://w3id.org/nmdc/ExternalIdentifier', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A CURIE representing an external identifier', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/nmdc/external_identifiers', imported_from=None, source=None, in_language=None, see_also=['https://microbiomedata.github.io/nmdc-schema/identifiers.html'], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof='uriorcurie', base='URIorCURIE', uri='xsd:anyURI', repr='str', union_of=[], pattern='^[a-zA-Z0-9][a-zA-Z0-9_\\\\.]+:[a-zA-Z0-9_][a-zA-Z0-9_\\\\/\\\\.]*$', structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'string': TypeDefinition(name='string', id_prefixes=[], definition_uri='https://w3id.org/linkml/String', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A character string', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=['schema:Text'], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='str', uri='xsd:string', repr=None, union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'integer': TypeDefinition(name='integer', id_prefixes=[], definition_uri='https://w3id.org/linkml/Integer', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='An integer', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=['schema:Integer'], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='int', uri='xsd:integer', repr=None, union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'boolean': TypeDefinition(name='boolean', id_prefixes=[], definition_uri='https://w3id.org/linkml/Boolean', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A binary (true or false) value', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=['schema:Boolean'], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='Bool', uri='xsd:boolean', repr='bool', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'float': TypeDefinition(name='float', id_prefixes=[], definition_uri='https://w3id.org/linkml/Float', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A real number that conforms to the xsd:float specification', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=['schema:Float'], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='float', uri='xsd:float', repr=None, union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'double': TypeDefinition(name='double', id_prefixes=[], definition_uri='https://w3id.org/linkml/Double', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A real number that conforms to the xsd:double specification', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=['schema:Float'], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='float', uri='xsd:double', repr=None, union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'decimal': TypeDefinition(name='decimal', id_prefixes=[], definition_uri='https://w3id.org/linkml/Decimal', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A real number with arbitrary precision that conforms to the xsd:decimal specification', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=['schema:Number'], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='Decimal', uri='xsd:decimal', repr=None, union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'time': TypeDefinition(name='time', id_prefixes=[], definition_uri='https://w3id.org/linkml/Time', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A time object represents a (local) time of day, independent of any particular day', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=['URI is dateTime because OWL reasoners do not work with straight date or time'], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=['schema:Time'], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='XSDTime', uri='xsd:time', repr='str', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'date': TypeDefinition(name='date', id_prefixes=[], definition_uri='https://w3id.org/linkml/Date', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='a date (year, month and day) in an idealized calendar', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[\"URI is dateTime because OWL reasoners don't work with straight date or time\"], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=['schema:Date'], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='XSDDate', uri='xsd:date', repr='str', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'datetime': TypeDefinition(name='datetime', id_prefixes=[], definition_uri='https://w3id.org/linkml/Datetime', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='The combination of a date and time', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=['schema:DateTime'], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='XSDDateTime', uri='xsd:dateTime', repr='str', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'date_or_datetime': TypeDefinition(name='date_or_datetime', id_prefixes=[], definition_uri='https://w3id.org/linkml/DateOrDatetime', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='Either a date or a datetime', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='str', uri='linkml:DateOrDatetime', repr='str', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'uriorcurie': TypeDefinition(name='uriorcurie', id_prefixes=[], definition_uri='https://w3id.org/linkml/Uriorcurie', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='a URI or a CURIE', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='URIorCURIE', uri='xsd:anyURI', repr='str', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'curie': TypeDefinition(name='curie', id_prefixes=[], definition_uri='https://w3id.org/linkml/Curie', local_names={}, conforms_to='https://www.w3.org/TR/curie/', implements=[], extensions={}, annotations={}, description='a compact URI', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=['in RDF serializations this MUST be expanded to a URI', 'in non-RDF serializations MAY be serialized as the compact representation'], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='Curie', uri='xsd:string', repr='str', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'uri': TypeDefinition(name='uri', id_prefixes=[], definition_uri='https://w3id.org/linkml/Uri', local_names={}, conforms_to='https://www.ietf.org/rfc/rfc3987.txt', implements=[], extensions={}, annotations={}, description='a complete URI', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=['in RDF serializations a slot with range of uri is treated as a literal or type xsd:anyURI unless it is an identifier or a reference to an identifier, in which case it is translated directly to a node'], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=['schema:URL'], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='URI', uri='xsd:anyURI', repr='str', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'ncname': TypeDefinition(name='ncname', id_prefixes=[], definition_uri='https://w3id.org/linkml/Ncname', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='Prefix part of CURIE', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='NCName', uri='xsd:string', repr='str', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'objectidentifier': TypeDefinition(name='objectidentifier', id_prefixes=[], definition_uri='https://w3id.org/linkml/Objectidentifier', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A URI or CURIE that represents an object in the model.', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=['Used for inheritence and type checking'], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='ElementIdentifier', uri='shex:iri', repr='str', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[]), 'nodeidentifier': TypeDefinition(name='nodeidentifier', id_prefixes=[], definition_uri='https://w3id.org/linkml/Nodeidentifier', local_names={}, conforms_to=None, implements=[], extensions={}, annotations={}, description='A URI, CURIE or BNODE that represents a node in a model.', alt_descriptions={}, title=None, deprecated=None, todos=[], notes=[], comments=[], examples=[], in_subset=[], from_schema='https://w3id.org/linkml/types', imported_from='linkml:types', source=None, in_language=None, see_also=[], deprecated_element_has_exact_replacement=None, deprecated_element_has_possible_replacement=None, aliases=[], structured_aliases={}, mappings=[], exact_mappings=[], close_mappings=[], related_mappings=[], narrow_mappings=[], broad_mappings=[], created_by=None, created_on=None, last_updated_on=None, modified_by=None, status=None, rank=None, typeof=None, base='NodeIdentifier', uri='shex:nonLiteral', repr='str', union_of=[], pattern=None, structured_pattern=None, unit=None, implicit_prefix=None, equals_string=None, equals_string_in=[], equals_number=None, minimum_value=None, maximum_value=None, none_of=[], exactly_one_of=[], any_of=[], all_of=[])}" . + nmdc:sample_collection_day a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "sample_collection_day" ; @@ -429,12 +428,12 @@ nmdc:BiosampleProcessing a owl:Class, linkml:ClassDefinition ; rdfs:label "BiosampleProcessing" ; rdfs:subClassOf [ a owl:Restriction ; + owl:allValuesFrom nmdc:Biosample ; + owl:onProperty nmdc:has_input ], + [ a owl:Restriction ; owl:onClass linkml:Uriorcurie ; owl:onProperty nmdc:id ; owl:qualifiedCardinality 1 ], - [ a owl:Restriction ; - owl:allValuesFrom nmdc:Biosample ; - owl:onProperty nmdc:has_input ], nmdc:NamedThing ; skos:altLabel "material processing" ; skos:broadMatch ; @@ -448,22 +447,22 @@ nmdc:ProteinQuantification a owl:Class, rdfs:subClassOf [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Integer ; - owl:onProperty nmdc:protein_spectral_count ], + owl:onProperty nmdc:protein_sum_masic_abundance ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Integer ; - owl:onProperty nmdc:protein_sum_masic_abundance ], + owl:onProperty nmdc:peptide_sequence_count ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass nmdc:GeneProduct ; + owl:onProperty nmdc:best_protein ], [ a owl:Restriction ; owl:allValuesFrom nmdc:GeneProduct ; owl:onProperty nmdc:all_proteins ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Integer ; - owl:onProperty nmdc:peptide_sequence_count ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:GeneProduct ; - owl:onProperty nmdc:best_protein ] ; + owl:onProperty nmdc:protein_spectral_count ] ; skos:definition "This is used to link a metaproteomics analysis workflow to a specific protein" ; linkml:attributes "{}" . @@ -473,11 +472,10 @@ nmdc:Reaction a owl:Class, rdfs:subClassOf [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Boolean ; - owl:onProperty nmdc:is_stereo ], + owl:onProperty nmdc:is_fully_characterized ], [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:Boolean ; - owl:onProperty nmdc:is_diastereoselective ], + owl:allValuesFrom nmdc:ReactionParticipant ; + owl:onProperty nmdc:left_participants ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Boolean ; @@ -486,10 +484,6 @@ nmdc:Reaction a owl:Class, owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; owl:onProperty nmdc:direction ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:smarts_string ], [ a owl:Restriction ; owl:allValuesFrom nmdc:ReactionParticipant ; owl:onProperty nmdc:right_participants ], @@ -500,10 +494,15 @@ nmdc:Reaction a owl:Class, [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Boolean ; - owl:onProperty nmdc:is_fully_characterized ], + owl:onProperty nmdc:is_diastereoselective ], [ a owl:Restriction ; - owl:allValuesFrom nmdc:ReactionParticipant ; - owl:onProperty nmdc:left_participants ], + owl:maxQualifiedCardinality 1 ; + owl:onClass linkml:Boolean ; + owl:onProperty nmdc:is_stereo ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass linkml:String ; + owl:onProperty nmdc:smarts_string ], nmdc:FunctionalAnnotationTerm ; skos:definition "An individual biochemical transformation carried out by a functional unit of an organism, in which a collection of substrates are transformed into a collection of products. Can also represent transporters" ; skos:exactMatch ; @@ -2237,10 +2236,6 @@ nmdc:zinc a owl:ObjectProperty, nmdc:occurrence "1" ; nmdc:preferred_unit "mg/kg (ppm)" . -EFO:0001741 a owl:Class, - nmdc:CreditEnum ; - rdfs:label "Submitter" . - a owl:Class, nmdc:SolventEnum ; rdfs:label "methanol" . @@ -2260,6 +2255,10 @@ EFO:0001741 a owl:Class, skos:definition "An email address for an entity such as a person. This should be the primary email address used." ; skos:exactMatch . +EFO:0001741 a owl:Class, + nmdc:CreditEnum ; + rdfs:label "Submitter" . + a owl:ObjectProperty, linkml:SlotDefinition ; rdfs:label "latitude" ; @@ -11749,7 +11748,13 @@ nmdc:CollectingBiosamplesFromSite a owl:Class, linkml:ClassDefinition ; rdfs:label "CollectingBiosamplesFromSite" ; dcterms:title "Collecting Biosamples From Site" ; - rdfs:subClassOf [ a owl:Restriction ; + rdfs:subClassOf [ a owl:Class ; + owl:intersectionOf ( [ a owl:Restriction ; + owl:allValuesFrom nmdc:Biosample ; + owl:onProperty nmdc:has_output ] [ a owl:Restriction ; + owl:onProperty nmdc:has_output ; + owl:someValuesFrom nmdc:Biosample ] ) ], + [ a owl:Restriction ; owl:onClass linkml:Uriorcurie ; owl:onProperty nmdc:id ; owl:qualifiedCardinality 1 ], @@ -11759,12 +11764,6 @@ nmdc:CollectingBiosamplesFromSite a owl:Class, owl:onProperty nmdc:has_input ] [ a owl:Restriction ; owl:onProperty nmdc:has_input ; owl:someValuesFrom nmdc:Site ] ) ], - [ a owl:Class ; - owl:intersectionOf ( [ a owl:Restriction ; - owl:allValuesFrom nmdc:Biosample ; - owl:onProperty nmdc:has_output ] [ a owl:Restriction ; - owl:onProperty nmdc:has_output ; - owl:someValuesFrom nmdc:Biosample ] ) ], nmdc:PlannedProcess ; linkml:attributes "{}" ; linkml:is_a "PlannedProcess" . @@ -11833,17 +11832,13 @@ nmdc:DataObject a owl:Class, linkml:ClassDefinition ; rdfs:label "DataObject" ; rdfs:subClassOf [ a owl:Restriction ; - owl:onClass linkml:String ; - owl:onProperty dcterms:description ; - owl:qualifiedCardinality 1 ], - [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:FileTypeEnum ; - owl:onProperty nmdc:data_object_type ], + owl:onClass linkml:String ; + owl:onProperty nmdc:url ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:md5_checksum ], + owl:onProperty nmdc:type ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:Bytes ; @@ -11853,9 +11848,13 @@ nmdc:DataObject a owl:Class, owl:onClass nmdc:Activity ; owl:onProperty nmdc:was_generated_by ], [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:url ], + owl:onProperty dcterms:description ; + owl:qualifiedCardinality 1 ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass nmdc:FileTypeEnum ; + owl:onProperty nmdc:data_object_type ], [ a owl:Restriction ; owl:onClass linkml:String ; owl:onProperty nmdc:name ; @@ -11863,11 +11862,11 @@ nmdc:DataObject a owl:Class, [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:type ], + owl:onProperty nmdc:compression_type ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:compression_type ], + owl:onProperty nmdc:md5_checksum ], [ a owl:Restriction ; owl:onClass linkml:Uriorcurie ; owl:onProperty nmdc:id ; @@ -11936,11 +11935,7 @@ nmdc:DataObject a owl:Class, nmdc:Extraction a owl:Class, linkml:ClassDefinition ; rdfs:label "Extraction" ; - rdfs:subClassOf [ a owl:Restriction ; - owl:onClass linkml:Uriorcurie ; - owl:onProperty nmdc:id ; - owl:qualifiedCardinality 1 ], - [ a owl:Class ; + rdfs:subClassOf [ a owl:Class ; owl:intersectionOf ( [ a owl:Restriction ; owl:allValuesFrom nmdc:NamedThing ; owl:onProperty nmdc:has_input ] [ a owl:Restriction ; @@ -11948,8 +11943,12 @@ nmdc:Extraction a owl:Class, owl:someValuesFrom nmdc:NamedThing ] ) ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:QualityControlReport ; - owl:onProperty nmdc:quality_control_report ], + owl:onClass linkml:String ; + owl:onProperty nmdc:extraction_method ], + [ a owl:Restriction ; + owl:onClass linkml:Uriorcurie ; + owl:onProperty nmdc:id ; + owl:qualifiedCardinality 1 ], [ a owl:Class ; owl:intersectionOf ( [ a owl:Restriction ; owl:allValuesFrom nmdc:NamedThing ; @@ -11958,8 +11957,8 @@ nmdc:Extraction a owl:Class, owl:someValuesFrom nmdc:NamedThing ] ) ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:extraction_method ], + owl:onClass nmdc:QuantityValue ; + owl:onProperty nmdc:sample_mass ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:ExtractionTargetEnum ; @@ -11970,8 +11969,8 @@ nmdc:Extraction a owl:Class, owl:onProperty nmdc:processing_institution ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:QuantityValue ; - owl:onProperty nmdc:sample_mass ], + owl:onClass nmdc:QualityControlReport ; + owl:onProperty nmdc:quality_control_report ], nmdc:PlannedProcess ; linkml:attributes "{}" ; linkml:is_a "PlannedProcess" . @@ -12274,7 +12273,7 @@ nmdc:ImageValue a owl:Class, rdfs:subClassOf [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty dcterms:description ], + owl:onProperty nmdc:url ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; @@ -12282,7 +12281,7 @@ nmdc:ImageValue a owl:Class, [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:url ], + owl:onProperty dcterms:description ], nmdc:AttributeValue ; skos:definition "An attribute value representing an image." ; linkml:attributes "{}" ; @@ -12292,10 +12291,6 @@ nmdc:InstrumentValue a owl:Class, linkml:ClassDefinition ; rdfs:label "InstrumentValue" ; rdfs:subClassOf [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:Float ; - owl:onProperty nmdc:has_numeric_value ], - [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:Unit ; owl:onProperty nmdc:has_unit ], @@ -12303,8 +12298,12 @@ nmdc:InstrumentValue a owl:Class, owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; owl:onProperty nmdc:instrument_name ], - nmdc:AttributeValue ; - linkml:attributes "{}" ; + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass linkml:Float ; + owl:onProperty nmdc:has_numeric_value ], + nmdc:AttributeValue ; + linkml:attributes "{}" ; linkml:is_a "AttributeValue" . a owl:Class, @@ -12327,37 +12326,37 @@ nmdc:LibraryPreparation a owl:Class, linkml:ClassDefinition ; rdfs:label "LibraryPreparation" ; rdfs:subClassOf [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:LibraryTypeEnum ; - owl:onProperty nmdc:library_type ], - [ a owl:Restriction ; - owl:onClass linkml:Uriorcurie ; - owl:onProperty nmdc:id ; - owl:qualifiedCardinality 1 ], - [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:ProcessingInstitutionEnum ; owl:onProperty nmdc:processing_institution ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:library_preparation_kit ], + owl:onClass linkml:Integer ; + owl:onProperty nmdc:pcr_cycles ], + [ a owl:Restriction ; + owl:onClass linkml:Uriorcurie ; + owl:onProperty nmdc:id ; + owl:qualifiedCardinality 1 ], [ a owl:Class ; owl:intersectionOf ( [ a owl:Restriction ; owl:allValuesFrom nmdc:NamedThing ; - owl:onProperty nmdc:has_input ] [ a owl:Restriction ; - owl:onProperty nmdc:has_input ; + owl:onProperty nmdc:has_output ] [ a owl:Restriction ; + owl:onProperty nmdc:has_output ; owl:someValuesFrom nmdc:NamedThing ] ) ], [ a owl:Class ; owl:intersectionOf ( [ a owl:Restriction ; owl:allValuesFrom nmdc:NamedThing ; - owl:onProperty nmdc:has_output ] [ a owl:Restriction ; - owl:onProperty nmdc:has_output ; + owl:onProperty nmdc:has_input ] [ a owl:Restriction ; + owl:onProperty nmdc:has_input ; owl:someValuesFrom nmdc:NamedThing ] ) ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:Integer ; - owl:onProperty nmdc:pcr_cycles ], + owl:onClass nmdc:LibraryTypeEnum ; + owl:onProperty nmdc:library_type ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass linkml:String ; + owl:onProperty nmdc:library_preparation_kit ], nmdc:PlannedProcess ; skos:altLabel "LibraryConstruction" ; skos:closeMatch ; @@ -12377,28 +12376,17 @@ nmdc:MagsAnalysisActivity a owl:Class, rdfs:label "MagsAnalysisActivity" ; dcterms:title "Metagenome-Assembled Genome analysis activity" ; rdfs:subClassOf [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:Integer ; - owl:onProperty nmdc:input_contig_num ], - [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Integer ; owl:onProperty nmdc:too_short_contig_num ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Integer ; - owl:onProperty nmdc:binned_contig_num ], - [ a owl:Restriction ; - owl:onClass linkml:Uriorcurie ; - owl:onProperty nmdc:id ; - owl:qualifiedCardinality 1 ], - [ a owl:Restriction ; - owl:allValuesFrom nmdc:MagBin ; - owl:onProperty nmdc:mags_list ], + owl:onProperty nmdc:unbinned_contig_num ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Integer ; - owl:onProperty nmdc:unbinned_contig_num ], + owl:onProperty nmdc:low_depth_contig_num ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; @@ -12406,7 +12394,18 @@ nmdc:MagsAnalysisActivity a owl:Class, [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Integer ; - owl:onProperty nmdc:low_depth_contig_num ], + owl:onProperty nmdc:input_contig_num ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass linkml:Integer ; + owl:onProperty nmdc:binned_contig_num ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:MagBin ; + owl:onProperty nmdc:mags_list ], + [ a owl:Restriction ; + owl:onClass linkml:Uriorcurie ; + owl:onProperty nmdc:id ; + owl:qualifiedCardinality 1 ], nmdc:WorkflowExecutionActivity ; skos:definition "A workflow execution activity that uses computational binning tools to group assembled contigs into genomes" ; linkml:attributes "{}" ; @@ -12417,8 +12416,8 @@ nmdc:MetabolomicsAnalysisActivity a owl:Class, rdfs:label "MetabolomicsAnalysisActivity" ; rdfs:subClassOf [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:has_calibration ], + owl:onClass nmdc:Instrument ; + owl:onProperty nmdc:used ], [ a owl:Restriction ; owl:onClass linkml:Uriorcurie ; owl:onProperty nmdc:id ; @@ -12428,8 +12427,8 @@ nmdc:MetabolomicsAnalysisActivity a owl:Class, owl:onProperty nmdc:has_metabolite_quantifications ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:Instrument ; - owl:onProperty nmdc:used ], + owl:onClass linkml:String ; + owl:onProperty nmdc:has_calibration ], nmdc:WorkflowExecutionActivity ; linkml:attributes "{}" ; linkml:is_a "WorkflowExecutionActivity" . @@ -12440,71 +12439,71 @@ nmdc:MetagenomeAssembly a owl:Class, rdfs:subClassOf [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:asm_score ], + owl:onProperty nmdc:scaf_n_gt50k ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:ctg_max ], + owl:onProperty nmdc:num_input_reads ], + [ a owl:Restriction ; + owl:onClass linkml:Uriorcurie ; + owl:onProperty nmdc:id ; + owl:qualifiedCardinality 1 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:ctg_l90 ], + owl:onProperty nmdc:scaf_logsum ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:scaffolds ], + owl:onProperty nmdc:scaf_pct_gt50k ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:type ], + owl:onClass linkml:Float ; + owl:onProperty nmdc:scaffolds ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:scaf_logsum ], + owl:onProperty nmdc:ctg_max ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:scaf_pct_gt50k ], + owl:onProperty nmdc:gc_std ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:scaf_l90 ], + owl:onProperty nmdc:ctg_powsum ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:scaf_n_gt50k ], + owl:onProperty nmdc:ctg_l90 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:ctg_l50 ], + owl:onProperty nmdc:scaf_l_gt50k ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:Float ; - owl:onProperty nmdc:num_aligned_reads ], + owl:onClass linkml:String ; + owl:onProperty nmdc:type ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:contig_bp ], + owl:onProperty nmdc:ctg_logsum ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:gap_pct ], - [ a owl:Restriction ; - owl:onClass linkml:Uriorcurie ; - owl:onProperty nmdc:id ; - owl:qualifiedCardinality 1 ], + owl:onProperty nmdc:scaf_bp ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:scaf_n90 ], + owl:onProperty nmdc:gc_avg ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:ctg_n50 ], + owl:onProperty nmdc:num_aligned_reads ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:ctg_logsum ], + owl:onProperty nmdc:ctg_n50 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; @@ -12512,11 +12511,11 @@ nmdc:MetagenomeAssembly a owl:Class, [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:gc_std ], + owl:onProperty nmdc:gap_pct ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:gc_avg ], + owl:onProperty nmdc:scaf_l90 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; @@ -12524,19 +12523,19 @@ nmdc:MetagenomeAssembly a owl:Class, [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:ctg_powsum ], + owl:onProperty nmdc:scaf_n90 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:scaf_bp ], + owl:onProperty nmdc:contig_bp ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:num_input_reads ], + owl:onProperty nmdc:ctg_l50 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:scaf_l_gt50k ], + owl:onProperty nmdc:scaf_l50 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; @@ -12548,7 +12547,7 @@ nmdc:MetagenomeAssembly a owl:Class, [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:scaf_l50 ], + owl:onProperty nmdc:contigs ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; @@ -12556,7 +12555,7 @@ nmdc:MetagenomeAssembly a owl:Class, [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty nmdc:contigs ], + owl:onProperty nmdc:asm_score ], nmdc:WorkflowExecutionActivity ; skos:definition "A workflow execution activity that converts sequencing reads into an assembled metagenome." ; linkml:attributes "{}" ; @@ -12582,13 +12581,13 @@ nmdc:MetaproteomicsAnalysisActivity a owl:Class, owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:Instrument ; owl:onProperty nmdc:used ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:PeptideQuantification ; + owl:onProperty nmdc:has_peptide_quantifications ], [ a owl:Restriction ; owl:onClass linkml:Uriorcurie ; owl:onProperty nmdc:id ; owl:qualifiedCardinality 1 ], - [ a owl:Restriction ; - owl:allValuesFrom nmdc:PeptideQuantification ; - owl:onProperty nmdc:has_peptide_quantifications ], nmdc:WorkflowExecutionActivity ; linkml:attributes "{}" ; linkml:is_a "WorkflowExecutionActivity" . @@ -12597,13 +12596,13 @@ nmdc:MetatranscriptomeActivity a owl:Class, linkml:ClassDefinition ; rdfs:label "MetatranscriptomeActivity" ; rdfs:subClassOf [ a owl:Restriction ; - owl:onClass linkml:Uriorcurie ; - owl:onProperty nmdc:id ; - owl:qualifiedCardinality 1 ], - [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; owl:onProperty nmdc:type ], + [ a owl:Restriction ; + owl:onClass linkml:Uriorcurie ; + owl:onProperty nmdc:id ; + owl:qualifiedCardinality 1 ], nmdc:WorkflowExecutionActivity ; skos:definition "A metatranscriptome activity that e.g. pools assembly and annotation activity." ; linkml:attributes "{}" ; @@ -12632,12 +12631,9 @@ nmdc:OmicsProcessing a owl:Class, linkml:ClassDefinition ; rdfs:label "OmicsProcessing" ; rdfs:subClassOf [ a owl:Restriction ; - owl:allValuesFrom nmdc:NamedThing ; - owl:onProperty dcterms:isPartOf ], - [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:TextValue ; - owl:onProperty ], + owl:onClass linkml:String ; + owl:onProperty nmdc:mod_date ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:ProcessingInstitutionEnum ; @@ -12645,33 +12641,23 @@ nmdc:OmicsProcessing a owl:Class, [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:ncbi_project_name ], - [ a owl:Restriction ; - owl:allValuesFrom nmdc:ExternalIdentifier ; - owl:onProperty nmdc:insdc_experiment_identifiers ], + owl:onProperty nmdc:type ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:TextValue ; - owl:onProperty ], - [ a owl:Restriction ; - owl:allValuesFrom nmdc:ExternalIdentifier ; - owl:onProperty nmdc:gold_sequencing_project_identifiers ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:TextValue ; - owl:onProperty ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:PersonValue ; - owl:onProperty nmdc:principal_investigator ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:QuantityValue ; - owl:onProperty ], + owl:onClass nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:mod_date ], + owl:onClass nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; @@ -12679,49 +12665,62 @@ nmdc:OmicsProcessing a owl:Class, [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:TextValue ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:TextValue ; - owl:onProperty ], - [ a owl:Restriction ; - owl:allValuesFrom nmdc:NamedThing ; - owl:onProperty nmdc:has_input ], + owl:onProperty ], [ a owl:Restriction ; - owl:allValuesFrom nmdc:NamedThing ; - owl:onProperty nmdc:has_output ], + owl:maxQualifiedCardinality 1 ; + owl:onClass nmdc:QuantityValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:TextValue ; - owl:onProperty ], + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:ExternalIdentifier ; + owl:onProperty nmdc:gold_sequencing_project_identifiers ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:type ], + owl:onClass nmdc:PersonValue ; + owl:onProperty nmdc:principal_investigator ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:ControlledTermValue ; owl:onProperty nmdc:omics_type ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:ExternalIdentifier ; + owl:onProperty nmdc:insdc_experiment_identifiers ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:NamedThing ; + owl:onProperty dcterms:isPartOf ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:NamedThing ; + owl:onProperty nmdc:has_input ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:add_date ], + owl:onProperty nmdc:ncbi_project_name ], [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:TextValue ; - owl:onProperty ], + owl:allValuesFrom nmdc:NamedThing ; + owl:onProperty nmdc:has_output ], [ a owl:Restriction ; - owl:onClass linkml:Uriorcurie ; - owl:onProperty nmdc:id ; - owl:qualifiedCardinality 1 ], + owl:maxQualifiedCardinality 1 ; + owl:onClass linkml:String ; + owl:onProperty nmdc:add_date ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:TextValue ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:TextValue ; - owl:onProperty ], + owl:onProperty ], + [ a owl:Restriction ; + owl:onClass linkml:Uriorcurie ; + owl:onProperty nmdc:id ; + owl:qualifiedCardinality 1 ], nmdc:BiosampleProcessing ; skos:altLabel "experiment", "omics assay", @@ -12754,21 +12753,9 @@ nmdc:ProcessedSample a owl:Class, rdfs:label "ProcessedSample" ; dcterms:title "Processed Sample" ; rdfs:subClassOf [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:Float ; - owl:onProperty nmdc:dna_concentration ], - [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; owl:onProperty nmdc:dna_absorb1 ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:InstrumentValue ; - owl:onProperty nmdc:nucleic_acid_concentration ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:QuantityValue ; - owl:onProperty nmdc:biomaterial_purity ], [ a owl:Restriction ; owl:onClass linkml:Uriorcurie ; owl:onProperty nmdc:id ; @@ -12776,6 +12763,18 @@ nmdc:ProcessedSample a owl:Class, [ a owl:Restriction ; owl:allValuesFrom nmdc:ExternalIdentifier ; owl:onProperty nmdc:external_database_identifiers ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass nmdc:QuantityValue ; + owl:onProperty nmdc:biomaterial_purity ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass linkml:Float ; + owl:onProperty nmdc:dna_concentration ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass nmdc:InstrumentValue ; + owl:onProperty nmdc:nucleic_acid_concentration ], nmdc:MaterialEntity ; linkml:attributes "{}" ; linkml:is_a "MaterialEntity" . @@ -12785,13 +12784,13 @@ nmdc:ReadBasedTaxonomyAnalysisActivity a owl:Class, rdfs:label "ReadBasedTaxonomyAnalysisActivity" ; dcterms:title "Read based analysis activity" ; rdfs:subClassOf [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:type ], - [ a owl:Restriction ; owl:onClass linkml:Uriorcurie ; owl:onProperty nmdc:id ; owl:qualifiedCardinality 1 ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass linkml:String ; + owl:onProperty nmdc:type ], nmdc:WorkflowExecutionActivity ; skos:definition "A workflow execution activity that performs taxonomy classification using sequencing reads" ; linkml:attributes "{}" ; @@ -12802,29 +12801,13 @@ nmdc:ReadQcAnalysisActivity a owl:Class, rdfs:label "ReadQcAnalysisActivity" ; dcterms:title "Read quality control analysis activity" ; rdfs:subClassOf [ a owl:Restriction ; - owl:onClass linkml:Uriorcurie ; - owl:onProperty nmdc:id ; - owl:qualifiedCardinality 1 ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:Float ; - owl:onProperty nmdc:output_read_bases ], - [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; owl:onProperty nmdc:output_base_count ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:Float ; - owl:onProperty nmdc:output_read_count ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; owl:onProperty nmdc:input_base_count ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:Float ; - owl:onProperty nmdc:input_read_count ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; @@ -12833,10 +12816,26 @@ nmdc:ReadQcAnalysisActivity a owl:Class, owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; owl:onProperty nmdc:version ], + [ a owl:Restriction ; + owl:onClass linkml:Uriorcurie ; + owl:onProperty nmdc:id ; + owl:qualifiedCardinality 1 ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass linkml:Float ; + owl:onProperty nmdc:output_read_count ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass linkml:Float ; + owl:onProperty nmdc:input_read_count ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; owl:onProperty nmdc:input_read_bases ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass linkml:Float ; + owl:onProperty nmdc:output_read_bases ], nmdc:WorkflowExecutionActivity ; skos:definition "A workflow execution activity that performs quality control on raw Illumina reads including quality trimming, artifact removal, linker trimming, adapter trimming, spike-in removal, and human/cat/dog/mouse/microbe contaminant removal" ; linkml:attributes "{}" ; @@ -13548,20 +13547,20 @@ nmdc:ChemicalEntity a owl:Class, linkml:ClassDefinition ; rdfs:label "ChemicalEntity" ; rdfs:subClassOf [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:smiles ], - [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:chemical_formula ], + owl:onProperty nmdc:inchi_key ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:inchi_key ], + owl:onProperty nmdc:inchi ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:inchi ], + owl:onProperty nmdc:chemical_formula ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:smiles ], nmdc:OntologyClass ; skos:altLabel "chemical", "chemical compound", @@ -13584,20 +13583,16 @@ nmdc:DissolvingActivity a owl:Class, dcterms:title "Dissolving activity" ; rdfs:subClassOf [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:QuantityValue ; - owl:onProperty nmdc:dissolution_volume ], + owl:onClass nmdc:LabDevice ; + owl:onProperty nmdc:dissolution_aided_by ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:MaterialContainer ; owl:onProperty nmdc:dissolved_in ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:LabDevice ; - owl:onProperty nmdc:dissolution_aided_by ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:MaterialSample ; - owl:onProperty nmdc:material_input ], + owl:onClass nmdc:QuantityValue ; + owl:onProperty nmdc:dissolution_volume ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:SolventEnum ; @@ -13605,7 +13600,11 @@ nmdc:DissolvingActivity a owl:Class, [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:MaterialSample ; - owl:onProperty nmdc:material_output ] ; + owl:onProperty nmdc:material_output ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass nmdc:MaterialSample ; + owl:onProperty nmdc:material_input ] ; skos:altLabel "dissolution-activity" ; skos:exactMatch ; linkml:attributes "{}" . @@ -13614,21 +13613,21 @@ nmdc:FunctionalAnnotation a owl:Class, linkml:ClassDefinition ; rdfs:label "FunctionalAnnotation" ; rdfs:subClassOf [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:MetagenomeAnnotationActivity ; - owl:onProperty nmdc:was_generated_by ], - [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:OntologyClass ; owl:onProperty nmdc:type ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:has_function ], + owl:onClass nmdc:MetagenomeAnnotationActivity ; + owl:onProperty nmdc:was_generated_by ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:GeneProduct ; - owl:onProperty nmdc:subject ] ; + owl:onProperty nmdc:subject ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass linkml:String ; + owl:onProperty nmdc:has_function ] ; skos:definition "An assignment of a function term (e.g. reaction or pathway) that is executed by a gene product, or which the gene product plays an active role in. Functional annotations can be assigned manually by curators, or automatically in workflows. In the context of NMDC, all function annotation is performed automatically, typically using HMM or Blast type methods" ; skos:narrowMatch ; linkml:attributes "{}" . @@ -13647,37 +13646,37 @@ nmdc:GenomeFeature a owl:Class, linkml:ClassDefinition ; rdfs:label "GenomeFeature" ; rdfs:subClassOf [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Integer ; - owl:onProperty nmdc:phase ], + owl:onProperty nmdc:end ; + owl:qualifiedCardinality 1 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:OntologyClass ; owl:onProperty nmdc:type ], [ a owl:Restriction ; - owl:onClass linkml:Integer ; - owl:onProperty nmdc:start ; - owl:qualifiedCardinality 1 ], + owl:maxQualifiedCardinality 1 ; + owl:onClass linkml:String ; + owl:onProperty nmdc:feature_type ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:GeneProduct ; owl:onProperty nmdc:encodes ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:feature_type ], [ a owl:Restriction ; owl:onClass linkml:String ; owl:onProperty nmdc:seqid ; owl:qualifiedCardinality 1 ], [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:strand ], + owl:onClass linkml:Integer ; + owl:onProperty nmdc:start ; + owl:qualifiedCardinality 1 ], [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Integer ; - owl:onProperty nmdc:end ; - owl:qualifiedCardinality 1 ] ; + owl:onProperty nmdc:phase ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass linkml:String ; + owl:onProperty nmdc:strand ] ; skos:definition "A feature localized to an interval along a genome" ; linkml:attributes "{}" . @@ -13701,39 +13700,35 @@ nmdc:MagBin a owl:Class, rdfs:subClassOf [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:type ], + owl:onProperty nmdc:total_bases ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:Integer ; - owl:onProperty nmdc:num_23s ], + owl:onClass linkml:String ; + owl:onProperty nmdc:gtdbtk_genus ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; owl:onProperty nmdc:gtdbtk_species ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:Float ; - owl:onProperty nmdc:contamination ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:bin_name ], + owl:onProperty nmdc:type ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Integer ; - owl:onProperty nmdc:num_t_rna ], + owl:onProperty nmdc:number_of_contig ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Integer ; - owl:onProperty nmdc:gene_count ], + owl:onProperty nmdc:num_23s ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:gtdbtk_genus ], + owl:onProperty nmdc:gtdbtk_order ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:gtdbtk_phylum ], + owl:onClass linkml:Integer ; + owl:onProperty nmdc:num_5s ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; @@ -13742,6 +13737,10 @@ nmdc:MagBin a owl:Class, owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Integer ; owl:onProperty nmdc:num_16s ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass linkml:Float ; + owl:onProperty nmdc:contamination ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; @@ -13749,31 +13748,31 @@ nmdc:MagBin a owl:Class, [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:total_bases ], + owl:onProperty nmdc:gtdbtk_class ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:Integer ; - owl:onProperty nmdc:num_5s ], + owl:onClass linkml:Float ; + owl:onProperty nmdc:completeness ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:gtdbtk_class ], + owl:onProperty nmdc:members_id ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:members_id ], + owl:onClass linkml:Integer ; + owl:onProperty nmdc:num_t_rna ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:Float ; - owl:onProperty nmdc:completeness ], + owl:onClass linkml:String ; + owl:onProperty nmdc:gtdbtk_phylum ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Integer ; - owl:onProperty nmdc:number_of_contig ], + owl:onProperty nmdc:gene_count ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:gtdbtk_order ], + owl:onProperty nmdc:bin_name ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; @@ -13785,6 +13784,10 @@ nmdc:MaterialSamplingActivity a owl:Class, rdfs:label "MaterialSamplingActivity" ; dcterms:title "Material sampling activity" ; rdfs:subClassOf [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass nmdc:MaterialSample ; + owl:onProperty nmdc:material_output ], + [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; owl:onProperty nmdc:amount_collected ], @@ -13792,10 +13795,6 @@ nmdc:MaterialSamplingActivity a owl:Class, owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:SamplingMethodEnum ; owl:onProperty nmdc:sampling_method ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:MaterialSample ; - owl:onProperty nmdc:material_output ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:MaterialContainer ; @@ -13811,13 +13810,13 @@ nmdc:MetaboliteQuantification a owl:Class, owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; owl:onProperty nmdc:highest_similarity_score ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:Uriorcurie ; - owl:onProperty nmdc:alternative_identifiers ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:ChemicalEntity ; - owl:onProperty nmdc:metabolite_quantified ] ; + owl:onProperty nmdc:metabolite_quantified ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Uriorcurie ; + owl:onProperty nmdc:alternative_identifiers ] ; skos:definition "This is used to link a metabolomics analysis workflow to a specific metabolite" ; linkml:attributes "{}" . @@ -13847,10 +13846,17 @@ nmdc:PeptideQuantification a owl:Class, owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; owl:onProperty nmdc:min_q_value ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:GeneProduct ; + owl:onProperty nmdc:all_proteins ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Integer ; owl:onProperty nmdc:peptide_sum_masic_abundance ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass linkml:String ; + owl:onProperty nmdc:peptide_sequence ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Integer ; @@ -13858,14 +13864,7 @@ nmdc:PeptideQuantification a owl:Class, [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:GeneProduct ; - owl:onProperty nmdc:best_protein ], - [ a owl:Restriction ; - owl:allValuesFrom nmdc:GeneProduct ; - owl:onProperty nmdc:all_proteins ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:peptide_sequence ] ; + owl:onProperty nmdc:best_protein ] ; skos:definition "This is used to link a metaproteomics analysis workflow to a specific peptide sequence and related information" ; linkml:attributes "{}" . @@ -13901,20 +13900,20 @@ nmdc:ReactionActivity a owl:Class, dcterms:title "Reaction activity" ; rdfs:subClassOf [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:reaction_temperature ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:QuantityValue ; - owl:onProperty nmdc:reaction_time ], + owl:onClass nmdc:MaterialSample ; + owl:onProperty nmdc:material_output ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:MaterialSample ; owl:onProperty nmdc:material_input ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:MaterialSample ; - owl:onProperty nmdc:material_output ], + owl:onClass linkml:String ; + owl:onProperty nmdc:reaction_temperature ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass nmdc:QuantityValue ; + owl:onProperty nmdc:reaction_time ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:LabDevice ; @@ -14026,29 +14025,9 @@ nmdc:FieldResearchSite a owl:Class, owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:TextValue ; owl:onProperty ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:habitat ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:QuantityValue ; - owl:onProperty ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:TextValue ; - owl:onProperty ], [ a owl:Restriction ; owl:allValuesFrom nmdc:NamedThing ; owl:onProperty dcterms:isPartOf ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:GeolocationValue ; - owl:onProperty ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:TextValue ; - owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:TextValue ; @@ -14057,10 +14036,18 @@ nmdc:FieldResearchSite a owl:Class, owl:onClass linkml:Uriorcurie ; owl:onProperty nmdc:id ; owl:qualifiedCardinality 1 ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass nmdc:QuantityValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:neon_soil_type ], + owl:onProperty nmdc:habitat ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass linkml:String ; + owl:onProperty nmdc:neon_deims_sdr_link ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; @@ -14068,7 +14055,19 @@ nmdc:FieldResearchSite a owl:Class, [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:neon_deims_sdr_link ], + owl:onProperty nmdc:neon_soil_type ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass nmdc:GeolocationValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass nmdc:TextValue ; + owl:onProperty ], nmdc:Site ; skos:altLabel "research plot" ; skos:definition "A site, outside of a laboratory, from which biosamples may be collected." ; @@ -14111,12 +14110,15 @@ nmdc:PlannedProcess a owl:Class, rdfs:label "PlannedProcess" ; dcterms:title "Planned Process" ; rdfs:subClassOf [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:Protocol ; - owl:onProperty nmdc:protocol_link ], + owl:allValuesFrom nmdc:NamedThing ; + owl:onProperty nmdc:has_output ], [ a owl:Restriction ; owl:allValuesFrom nmdc:NamedThing ; owl:onProperty nmdc:has_input ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass nmdc:Protocol ; + owl:onProperty nmdc:protocol_link ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; @@ -14125,9 +14127,6 @@ nmdc:PlannedProcess a owl:Class, owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; owl:onProperty nmdc:end_date ], - [ a owl:Restriction ; - owl:allValuesFrom nmdc:NamedThing ; - owl:onProperty nmdc:has_output ], nmdc:NamedThing ; skos:exactMatch ; linkml:attributes "{}" ; @@ -14302,6 +14301,10 @@ nmdc:GeolocationValue a owl:Class, linkml:ClassDefinition ; rdfs:label "GeolocationValue" ; rdfs:subClassOf [ a owl:Restriction ; + owl:onClass nmdc:DecimalDegree ; + owl:onProperty ; + owl:qualifiedCardinality 1 ], + [ a owl:Restriction ; owl:onClass nmdc:DecimalDegree ; owl:onProperty ; owl:qualifiedCardinality 1 ], @@ -14309,10 +14312,6 @@ nmdc:GeolocationValue a owl:Class, owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; owl:onProperty nmdc:has_raw_value ], - [ a owl:Restriction ; - owl:onClass nmdc:DecimalDegree ; - owl:onProperty ; - owl:qualifiedCardinality 1 ], nmdc:AttributeValue ; skos:definition "A normalized value for a location on the earth's surface" ; skos:exactMatch ; @@ -14326,11 +14325,11 @@ nmdc:LabDevice a owl:Class, rdfs:subClassOf [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty nmdc:activity_time ], + owl:onProperty nmdc:activity_speed ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty nmdc:activity_speed ], + owl:onProperty nmdc:activity_time ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:DeviceTypeEnum ; @@ -14545,2199 +14544,2198 @@ nmdc:Biosample a owl:Class, rdfs:label "Biosample" ; rdfs:subClassOf [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass ; - owl:onProperty ], + owl:onClass nmdc:QuantityValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:TextValue ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty ], + owl:onProperty nmdc:non_microb_biomass ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:dna_cont_well ], + owl:onClass ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:TextValue ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:TimestampValue ; - owl:onProperty ], + owl:onClass nmdc:QuantityValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:RnaSampleFormatEnum ; - owl:onProperty nmdc:rna_sample_format ], + owl:onClass ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:TextValue ; - owl:onProperty ], + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass ; - owl:onProperty ], - [ a owl:Restriction ; - owl:allValuesFrom nmdc:TextValue ; - owl:onProperty ], + owl:onClass nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:TextValue ; - owl:onProperty ], + owl:onClass nmdc:QuantityValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:Float ; - owl:onProperty nmdc:rna_volume ], + owl:onClass ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:TextValue ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:add_date ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:QuantityValue ; - owl:onProperty ], + owl:onClass nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:TextValue ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:QuantityValue ; - owl:onProperty ], + owl:onClass ; + owl:onProperty ], [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:QuantityValue ; - owl:onProperty ], + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:non_microb_biomass_method ], + owl:allValuesFrom ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:TextValue ; - owl:onProperty ], + owl:onProperty ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass linkml:String ; + owl:onProperty nmdc:proposal_dna ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty ], + owl:onProperty nmdc:lbc_thirty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty ], + owl:onProperty ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass ; + owl:onProperty ], [ a owl:Restriction ; owl:allValuesFrom nmdc:TextValue ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:QuantityValue ; - owl:onProperty ], + owl:onClass nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:rna_seq_project ], + owl:onProperty nmdc:experimental_factor_other ], [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:TextValue ; - owl:onProperty ], + owl:onClass linkml:Uriorcurie ; + owl:onProperty nmdc:id ; + owl:qualifiedCardinality 1 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:TextValue ; - owl:onProperty ], + owl:onClass nmdc:QuantityValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:dna_sample_name ], + owl:onClass nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:dna_samp_id ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:TextValue ; - owl:onProperty ], + owl:onClass linkml:String ; + owl:onProperty nmdc:rna_seq_project ], [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:ControlledIdentifiedTermValue ; - owl:onProperty ; - owl:qualifiedCardinality 1 ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:TextValue ; - owl:onProperty ], - [ a owl:Restriction ; - owl:allValuesFrom nmdc:TextValue ; - owl:onProperty ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:Float ; - owl:onProperty nmdc:dna_absorb2 ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:rna_cont_well ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:SampleTypeEnum ; - owl:onProperty nmdc:sample_type ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:TextValue ; - owl:onProperty ], + owl:onClass nmdc:QuantityValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:TextValue ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:TextValue ; - owl:onProperty ], + owl:onClass ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:QuantityValue ; - owl:onProperty ], + owl:onClass linkml:String ; + owl:onProperty nmdc:ecosystem ], [ a owl:Restriction ; - owl:allValuesFrom nmdc:AnalysisTypeEnum ; - owl:onProperty nmdc:analysis_type ], + owl:allValuesFrom ; + owl:onProperty ], [ a owl:Restriction ; owl:allValuesFrom nmdc:TextValue ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass ; - owl:onProperty ], + owl:onClass nmdc:QuantityValue ; + owl:onProperty ], [ a owl:Restriction ; - owl:allValuesFrom nmdc:TextValue ; - owl:onProperty ], + owl:maxQualifiedCardinality 1 ; + owl:onClass linkml:String ; + owl:onProperty nmdc:soluble_iron_micromol ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty nmdc:subsurface_depth ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:ControlledTermValue ; - owl:onProperty ], + owl:onClass nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:QuantityValue ; - owl:onProperty ], + owl:onClass nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:ExternalIdentifier ; + owl:onProperty nmdc:gold_biosample_identifiers ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:QuantityValue ; - owl:onProperty ], + owl:onClass linkml:String ; + owl:onProperty nmdc:rna_cont_well ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:YesNoEnum ; - owl:onProperty nmdc:dnase_rna ], + owl:onClass linkml:String ; + owl:onProperty nmdc:filter_method ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass ; - owl:onProperty ], + owl:onClass nmdc:QuantityValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass ; - owl:onProperty ], + owl:onClass nmdc:QuantityValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:TextValue ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:ControlledTermValue ; - owl:onProperty ], + owl:onClass nmdc:QuantityValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:TextValue ; - owl:onProperty ], + owl:onClass linkml:String ; + owl:onProperty nmdc:rna_seq_project_name ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:QuantityValue ; - owl:onProperty ], + owl:onClass nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:rna_seq_project_pi ], + owl:onClass nmdc:QuantityValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass ; - owl:onProperty ], + owl:onProperty nmdc:rna_collect_site ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:TextValue ; - owl:onProperty ], + owl:onClass ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:ecosystem_subtype ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass ; - owl:onProperty ], + owl:onProperty nmdc:sample_collection_site ], + [ a owl:Class ; + owl:intersectionOf ( [ a owl:Restriction ; + owl:allValuesFrom nmdc:Study ; + owl:onProperty dcterms:isPartOf ] [ a owl:Restriction ; + owl:onProperty dcterms:isPartOf ; + owl:someValuesFrom nmdc:Study ] ) ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:TimestampValue ; - owl:onProperty ], + owl:onClass nmdc:QuantityValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:TextValue ; - owl:onProperty ], + owl:onClass linkml:String ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass ; - owl:onProperty ], - [ a owl:Restriction ; - owl:allValuesFrom nmdc:TextValue ; - owl:onProperty ], + owl:onClass nmdc:QuantityValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:TextValue ; - owl:onProperty ], + owl:onClass ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:host_name ], + owl:onClass nmdc:TimestampValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:TextValue ; - owl:onProperty ], + owl:onClass nmdc:QuantityValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:TextValue ; - owl:onProperty ], + owl:onClass linkml:Float ; + owl:onProperty nmdc:dna_absorb1 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:TextValue ; - owl:onProperty ], + owl:onClass nmdc:QuantityValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:TextValue ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass ; - owl:onProperty ], + owl:onClass nmdc:QuantityValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:QuantityValue ; - owl:onProperty nmdc:nitrite_nitrogen ], + owl:onClass ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass ; - owl:onProperty ], + owl:onClass nmdc:QuantityValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:TextValue ; - owl:onProperty ], + owl:onClass linkml:String ; + owl:onProperty ], [ a owl:Restriction ; - owl:allValuesFrom ; - owl:onProperty ], + owl:allValuesFrom nmdc:ExternalIdentifier ; + owl:onProperty nmdc:emsl_biosample_identifiers ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:ControlledTermValue ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:experimental_factor_other ], + owl:onClass linkml:Float ; + owl:onProperty nmdc:rna_volume ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:TimestampValue ; - owl:onProperty ], + owl:onClass linkml:Boolean ; + owl:onProperty nmdc:embargoed ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:TextValue ; - owl:onProperty ], + owl:onClass ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty nmdc:lbceq ], - [ a owl:Restriction ; - owl:allValuesFrom nmdc:ExternalIdentifier ; - owl:onProperty nmdc:gold_biosample_identifiers ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty ], + owl:onProperty nmdc:habitat ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass ; - owl:onProperty ], + owl:onClass nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:TextValue ; - owl:onProperty ], + owl:onProperty ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass nmdc:ControlledTermValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty ], + owl:onClass nmdc:QuantityValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass ; - owl:onProperty ], + owl:onClass linkml:String ; + owl:onProperty nmdc:dna_collect_site ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:TextValue ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass ; - owl:onProperty ], + owl:onClass nmdc:QuantityValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:dna_container_id ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:ControlledTermValue ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:micro_biomass_n_meth ], + owl:onClass nmdc:QuantityValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:Float ; - owl:onProperty nmdc:dna_absorb1 ], + owl:onClass nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:TextValue ; - owl:onProperty ], + owl:onClass linkml:String ; + owl:onProperty nmdc:collection_date_inc ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:TextValue ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:allValuesFrom nmdc:TextValue ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:QuantityValue ; - owl:onProperty ], + owl:onClass nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:QuantityValue ; - owl:onProperty ], + owl:onClass ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:TextValue ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass ; - owl:onProperty ], + owl:onClass nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:QuantityValue ; - owl:onProperty ], + owl:onClass ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:TextValue ; - owl:onProperty ], + owl:onClass nmdc:ControlledTermValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:QuantityValue ; - owl:onProperty ], + owl:onClass linkml:String ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:TextValue ; - owl:onProperty ], - [ a owl:Restriction ; - owl:allValuesFrom nmdc:TextValue ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass ; - owl:onProperty ], + owl:onClass ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:ExternalIdentifier ; + owl:onProperty nmdc:insdc_biosample_identifiers ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass ; - owl:onProperty ], + owl:onClass nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:TextValue ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass ; - owl:onProperty ], + owl:onClass nmdc:QuantityValue ; + owl:onProperty ], [ a owl:Restriction ; owl:allValuesFrom nmdc:TextValue ; owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:QuantityValue ; - owl:onProperty ], + owl:onClass linkml:String ; + owl:onProperty nmdc:rna_seq_project_pi ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; 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owl:onClass nmdc:QuantityValue ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty ], + owl:onClass nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:allValuesFrom nmdc:TextValue ; - owl:onProperty ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass ; - owl:onProperty ], + owl:onClass nmdc:QuantityValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:dna_project_contact ], + owl:onClass ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:TextValue ; - owl:onProperty ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:TextValue ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:TextValue ; - owl:onProperty ], + owl:onClass nmdc:QuantityValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:dna_seq_project ], + owl:onClass ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty nmdc:lbc_thirty ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:QuantityValue ; - owl:onProperty ], + owl:onClass linkml:String ; + owl:onProperty ], [ a owl:Restriction ; owl:onClass nmdc:ControlledIdentifiedTermValue ; - owl:onProperty ; + owl:onProperty ; owl:qualifiedCardinality 1 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:TextValue ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:other_treatment ], + owl:onClass linkml:Double ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:QuantityValue ; - owl:onProperty ], - [ a owl:Restriction ; - owl:allValuesFrom ; - owl:onProperty ], + owl:onClass linkml:String ; + owl:onProperty nmdc:salinity_category ], [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:GeolocationValue ; - owl:onProperty ], + owl:allValuesFrom linkml:String ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:Double ; - owl:onProperty ], + owl:onClass linkml:String ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty ], - [ a owl:Restriction ; - owl:allValuesFrom nmdc:ControlledTermValue ; - owl:onProperty ], - [ a owl:Restriction ; - owl:allValuesFrom nmdc:TextValue ; - owl:onProperty ], + owl:onProperty nmdc:zinc ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:TextValue ; - owl:onProperty ], - [ a owl:Restriction ; - owl:allValuesFrom nmdc:TextValue ; - owl:onProperty ], + owl:onClass linkml:String ; + owl:onProperty nmdc:technical_reps ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass ; - owl:onProperty ], + owl:onClass nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty ], + owl:onClass ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty ], + owl:onProperty ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass nmdc:QuantityValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:sample_collection_site ], + owl:onProperty ], [ a owl:Restriction ; - owl:allValuesFrom nmdc:TextValue ; - owl:onProperty ], + owl:maxQualifiedCardinality 1 ; + owl:onClass nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass ; - owl:onProperty ], + owl:onClass nmdc:QuantityValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:TextValue ; - owl:onProperty ], + owl:onClass nmdc:QuantityValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:specific_ecosystem ], + owl:onClass ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:DnaSampleFormatEnum ; - owl:onProperty nmdc:dna_sample_format ], + owl:onClass nmdc:QuantityValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:ControlledTermValue ; - owl:onProperty ], + owl:onClass nmdc:QuantityValue ; + owl:onProperty nmdc:lbceq ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:Float ; - owl:onProperty nmdc:rna_absorb2 ], + owl:onClass nmdc:QuantityValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:dna_isolate_meth ], + owl:onProperty nmdc:dna_seq_project ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:QuantityValue ; - owl:onProperty ], + owl:onClass ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:TextValue ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:QuantityValue ; - owl:onProperty ], + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:technical_reps ], + owl:onClass nmdc:ControlledIdentifiedTermValue ; + owl:onProperty ; + owl:qualifiedCardinality 1 ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:QuantityValue ; - owl:onProperty ], + owl:onClass ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:TextValue ; - owl:onProperty ], + owl:onClass linkml:Float ; + owl:onProperty nmdc:dna_concentration ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:TextValue ; - owl:onProperty ], + owl:onClass ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass ; - owl:onProperty ], + owl:onClass nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass ; - owl:onProperty ], + owl:onClass linkml:String ; + owl:onProperty nmdc:microbial_biomass_n ], [ a owl:Restriction ; - owl:allValuesFrom ; - owl:onProperty ], + owl:allValuesFrom nmdc:AnalysisTypeEnum ; + owl:onProperty nmdc:analysis_type ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass ; - owl:onProperty ], + owl:onClass nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:ControlledIdentifiedTermValue ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:TextValue ; - owl:onProperty ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass ; - owl:onProperty ], + owl:onClass nmdc:QuantityValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:proposal_rna ], + owl:onProperty nmdc:org_nitro_method ], + [ a owl:Restriction ; + owl:allValuesFrom ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass ; - owl:onProperty ], + owl:onClass ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:TextValue ; - owl:onProperty ], + owl:onClass nmdc:QuantityValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:TextValue ; @@ -16745,115 +16743,116 @@ nmdc:Biosample a owl:Class, [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:TextValue ; - owl:onProperty ], + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass ; - owl:onProperty ], + owl:onClass nmdc:TextValue ; + owl:onProperty ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:ecosystem ], + owl:onProperty nmdc:isotope_exposure ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:QuantityValue ; - owl:onProperty ], + owl:onClass ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty ], + owl:onProperty ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:TextValue ; - owl:onProperty ], + owl:onClass nmdc:QuantityValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:Float ; - owl:onProperty nmdc:dna_concentration ], + owl:onClass linkml:String ; + owl:onProperty nmdc:dna_isolate_meth ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Uriorcurie ; + owl:onProperty nmdc:alternative_identifiers ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:TextValue ; - owl:onProperty ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass ; - owl:onProperty ], + owl:allValuesFrom nmdc:ControlledTermValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:TextValue ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:QuantityValue ; - owl:onProperty ], + owl:allValuesFrom nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:QuantityValue ; - owl:onProperty ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:TextValue ; - owl:onProperty ], - [ a owl:Restriction ; - owl:allValuesFrom nmdc:TextValue ; - owl:onProperty ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass ; - owl:onProperty ], + owl:onClass nmdc:QuantityValue ; + owl:onProperty ], [ a owl:Restriction ; - owl:allValuesFrom nmdc:TextValue ; - owl:onProperty ], + owl:allValuesFrom linkml:String ; + owl:onProperty ], [ a owl:Restriction ; - owl:allValuesFrom nmdc:TextValue ; - owl:onProperty ], + owl:maxQualifiedCardinality 1 ; + owl:onClass ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:rna_isolate_meth ], - [ a owl:Restriction ; - owl:allValuesFrom nmdc:ExternalIdentifier ; - owl:onProperty nmdc:neon_biosample_identifiers ], + owl:onProperty nmdc:non_microb_biomass_method ], [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:QuantityValue ; - owl:onProperty ], + owl:onClass nmdc:ControlledIdentifiedTermValue ; + owl:onProperty ; + owl:qualifiedCardinality 1 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:QuantityValue ; - owl:onProperty ], + owl:onClass ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:JgiContTypeEnum ; - owl:onProperty nmdc:rna_cont_type ], + owl:onClass nmdc:TextValue ; + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:QuantityValue ; - owl:onProperty ], + owl:onClass linkml:String ; + owl:onProperty nmdc:dna_samp_id ], nmdc:MaterialEntity ; skos:altLabel "biospecimen", "material sample", @@ -16869,10 +16868,12 @@ nmdc:Biosample a owl:Class, nmdc:CreditAssociation a owl:Class, linkml:ClassDefinition ; rdfs:label "CreditAssociation" ; - rdfs:subClassOf [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:type ], + rdfs:subClassOf [ a owl:Class ; + owl:intersectionOf ( [ a owl:Restriction ; + owl:allValuesFrom nmdc:CreditEnum ; + owl:onProperty nmdc:applied_roles ] [ a owl:Restriction ; + owl:onProperty nmdc:applied_roles ; + owl:someValuesFrom nmdc:CreditEnum ] ) ], [ a owl:Restriction ; owl:onClass nmdc:PersonValue ; owl:onProperty nmdc:applies_to_person ; @@ -16881,12 +16882,10 @@ nmdc:CreditAssociation a owl:Class, owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:CreditEnum ; owl:onProperty prov:hadRole ], - [ a owl:Class ; - owl:intersectionOf ( [ a owl:Restriction ; - owl:allValuesFrom nmdc:CreditEnum ; - owl:onProperty nmdc:applied_roles ] [ a owl:Restriction ; - owl:onProperty nmdc:applied_roles ; - owl:someValuesFrom nmdc:CreditEnum ] ) ] ; + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass linkml:String ; + owl:onProperty nmdc:type ] ; skos:altLabel "associated researchers", "credit table", "study role" ; @@ -16914,13 +16913,18 @@ nmdc:Study a owl:Class, linkml:ClassDefinition ; rdfs:label "Study" ; rdfs:subClassOf [ a owl:Restriction ; - owl:onClass linkml:Uriorcurie ; - owl:onProperty nmdc:id ; - owl:qualifiedCardinality 1 ], + owl:allValuesFrom nmdc:ExternalIdentifier ; + owl:onProperty nmdc:gnps_task_identifiers ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:ess_dive_datasets ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:ecosystem_category ], + owl:onProperty nmdc:notes ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:ExternalIdentifier ; + owl:onProperty nmdc:neon_study_identifiers ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; @@ -16928,109 +16932,104 @@ nmdc:Study a owl:Class, [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:title ], + owl:onProperty nmdc:type ], [ a owl:Restriction ; - owl:allValuesFrom nmdc:ExternalIdentifier ; - owl:onProperty nmdc:gold_study_identifiers ], + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:websites ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:alternative_titles ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:ecosystem ], + owl:onProperty dcterms:description ], [ a owl:Restriction ; - owl:allValuesFrom nmdc:ImageValue ; - owl:onProperty nmdc:study_image ], + owl:onClass linkml:Uriorcurie ; + owl:onProperty nmdc:id ; + owl:qualifiedCardinality 1 ], [ a owl:Restriction ; owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:publications ], + owl:onProperty nmdc:relevant_protocols ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:type ], - [ a owl:Restriction ; - owl:allValuesFrom nmdc:ExternalIdentifier ; - owl:onProperty nmdc:gnps_task_identifiers ], + owl:onProperty nmdc:ecosystem_subtype ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:specific_ecosystem ], + owl:onProperty nmdc:abstract ], [ a owl:Restriction ; owl:allValuesFrom nmdc:ExternalIdentifier ; - owl:onProperty nmdc:insdc_bioproject_identifiers ], - [ a owl:Restriction ; - owl:allValuesFrom nmdc:CreditAssociation ; - owl:onProperty prov:qualifiedAssociation ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:ess_dive_datasets ], + owl:onProperty nmdc:mgnify_project_identifiers ], [ a owl:Restriction ; - owl:allValuesFrom nmdc:ExternalIdentifier ; - owl:onProperty nmdc:neon_study_identifiers ], + owl:maxQualifiedCardinality 1 ; + owl:onClass linkml:String ; + owl:onProperty nmdc:objective ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:PersonValue ; - owl:onProperty nmdc:principal_investigator ], + owl:onClass linkml:String ; + owl:onProperty nmdc:title ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty dcterms:description ], + owl:onProperty nmdc:ecosystem_category ], [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:relevant_protocols ], + owl:allValuesFrom nmdc:ExternalIdentifier ; + owl:onProperty nmdc:massive_study_identifiers ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:ecosystem_type ], + owl:onProperty nmdc:related_identifiers ], [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:alternative_titles ], + owl:maxQualifiedCardinality 1 ; + owl:onClass linkml:String ; + owl:onProperty nmdc:ecosystem ], [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:alternative_descriptions ], + owl:allValuesFrom nmdc:ImageValue ; + owl:onProperty nmdc:study_image ], [ a owl:Restriction ; - owl:allValuesFrom linkml:Uriorcurie ; - owl:onProperty nmdc:alternative_identifiers ], + owl:allValuesFrom nmdc:CreditAssociation ; + owl:onProperty prov:qualifiedAssociation ], [ a owl:Restriction ; owl:allValuesFrom linkml:String ; owl:onProperty nmdc:funding_sources ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:AttributeValue ; - owl:onProperty nmdc:doi ], [ a owl:Restriction ; owl:allValuesFrom nmdc:ExternalIdentifier ; owl:onProperty nmdc:emsl_project_dois ], [ a owl:Restriction ; owl:allValuesFrom nmdc:ExternalIdentifier ; - owl:onProperty nmdc:massive_study_identifiers ], + owl:onProperty nmdc:insdc_bioproject_identifiers ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:notes ], + owl:onProperty nmdc:ecosystem_type ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:objective ], + owl:onClass nmdc:AttributeValue ; + owl:onProperty nmdc:doi ], [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:abstract ], + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:alternative_names ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:related_identifiers ], + owl:onClass nmdc:PersonValue ; + owl:onProperty nmdc:principal_investigator ], [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:ecosystem_subtype ], + owl:allValuesFrom linkml:Uriorcurie ; + owl:onProperty nmdc:alternative_identifiers ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:ExternalIdentifier ; + owl:onProperty nmdc:gold_study_identifiers ], [ a owl:Restriction ; owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:websites ], + owl:onProperty nmdc:alternative_descriptions ], [ a owl:Restriction ; owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:alternative_names ], + owl:onProperty nmdc:publications ], [ a owl:Restriction ; - owl:allValuesFrom nmdc:ExternalIdentifier ; - owl:onProperty nmdc:mgnify_project_identifiers ], + owl:maxQualifiedCardinality 1 ; + owl:onClass linkml:String ; + owl:onProperty nmdc:specific_ecosystem ], nmdc:NamedThing ; skos:altLabel "investigation", "project", @@ -17279,18 +17278,18 @@ nmdc:PersonValue a owl:Class, rdfs:subClassOf [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:name ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty nmdc:websites ], + owl:onProperty nmdc:profile_image_url ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:orcid ], + owl:onProperty ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty ], + owl:onProperty nmdc:name ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty nmdc:websites ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; @@ -17298,7 +17297,7 @@ nmdc:PersonValue a owl:Class, [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:profile_image_url ], + owl:onProperty nmdc:orcid ], nmdc:AttributeValue ; skos:definition "An attribute value representing a person" ; linkml:attributes "{}" ; @@ -17535,25 +17534,25 @@ nmdc:Activity a owl:Class, linkml:ClassDefinition ; rdfs:label "Activity" ; rdfs:subClassOf [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:Datetime ; - owl:onProperty nmdc:started_at_time ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:Datetime ; - owl:onProperty nmdc:ended_at_time ], - [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; owl:onProperty nmdc:name ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass nmdc:Activity ; + owl:onProperty nmdc:was_informed_by ], [ a owl:Restriction ; owl:onClass linkml:Uriorcurie ; owl:onProperty nmdc:id ; owl:qualifiedCardinality 1 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:Activity ; - owl:onProperty nmdc:was_informed_by ], + owl:onClass linkml:Datetime ; + owl:onProperty nmdc:ended_at_time ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass linkml:Datetime ; + owl:onProperty nmdc:started_at_time ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; @@ -17959,12 +17958,14 @@ nmdc:RnaSampleFormatEnum a owl:Class, nmdc:WorkflowExecutionActivity a owl:Class, linkml:ClassDefinition ; rdfs:label "WorkflowExecutionActivity" ; - rdfs:subClassOf [ a owl:Class ; - owl:intersectionOf ( [ a owl:Restriction ; - owl:allValuesFrom nmdc:NamedThing ; - owl:onProperty nmdc:has_output ] [ a owl:Restriction ; - owl:onProperty nmdc:has_output ; - owl:someValuesFrom nmdc:NamedThing ] ) ], + rdfs:subClassOf [ a owl:Restriction ; + owl:onClass linkml:Datetime ; + owl:onProperty nmdc:started_at_time ; + owl:qualifiedCardinality 1 ], + [ a owl:Restriction ; + owl:onClass linkml:Datetime ; + owl:onProperty nmdc:ended_at_time ; + owl:qualifiedCardinality 1 ], [ a owl:Restriction ; owl:allValuesFrom nmdc:NamedThing ; owl:onProperty dcterms:isPartOf ], @@ -17973,21 +17974,17 @@ nmdc:WorkflowExecutionActivity a owl:Class, owl:onProperty nmdc:id ; owl:qualifiedCardinality 1 ], [ a owl:Restriction ; - owl:onClass linkml:String ; - owl:onProperty nmdc:execution_resource ; + owl:onClass nmdc:Activity ; + owl:onProperty nmdc:was_informed_by ; owl:qualifiedCardinality 1 ], [ a owl:Restriction ; owl:onClass linkml:String ; owl:onProperty nmdc:type ; owl:qualifiedCardinality 1 ], [ a owl:Restriction ; - owl:onClass nmdc:Activity ; - owl:onProperty nmdc:was_informed_by ; - owl:qualifiedCardinality 1 ], - [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:git_url ; - owl:qualifiedCardinality 1 ], + owl:onProperty nmdc:version ], [ a owl:Class ; owl:intersectionOf ( [ a owl:Restriction ; owl:allValuesFrom nmdc:NamedThing ; @@ -17995,16 +17992,18 @@ nmdc:WorkflowExecutionActivity a owl:Class, owl:onProperty nmdc:has_input ; owl:someValuesFrom nmdc:NamedThing ] ) ], [ a owl:Restriction ; - owl:onClass linkml:Datetime ; - owl:onProperty nmdc:ended_at_time ; + owl:onClass linkml:String ; + owl:onProperty nmdc:git_url ; owl:qualifiedCardinality 1 ], + [ a owl:Class ; + owl:intersectionOf ( [ a owl:Restriction ; + owl:allValuesFrom nmdc:NamedThing ; + owl:onProperty nmdc:has_output ] [ a owl:Restriction ; + owl:onProperty nmdc:has_output ; + owl:someValuesFrom nmdc:NamedThing ] ) ], [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:version ], - [ a owl:Restriction ; - owl:onClass linkml:Datetime ; - owl:onProperty nmdc:started_at_time ; + owl:onProperty nmdc:execution_resource ; owl:qualifiedCardinality 1 ], nmdc:Activity ; skos:altLabel "analysis" ; @@ -18090,15 +18089,15 @@ nmdc:AttributeValue a owl:Class, rdfs:subClassOf [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty nmdc:type ], + owl:onProperty nmdc:has_raw_value ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass nmdc:Activity ; - owl:onProperty nmdc:was_generated_by ], + owl:onClass linkml:String ; + owl:onProperty nmdc:type ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:has_raw_value ] ; + owl:onClass nmdc:Activity ; + owl:onProperty nmdc:was_generated_by ] ; skos:definition "The value for any value of a attribute for a sample. This object can hold both the un-normalized atomic value and the structured value" ; linkml:attributes "{}" . @@ -18252,8 +18251,8 @@ nmdc:CreditEnum a owl:Class, linkml:EnumDefinition ; rdfs:label "credit enum" ; owl:unionOf ( EFO:0001741 ) ; - linkml:permissible_values EFO:0001741, - , + linkml:permissible_values , + EFO:0001741, , , , @@ -18292,63 +18291,33 @@ nmdc:Database a owl:Class, linkml:ClassDefinition ; rdfs:label "Database" ; rdfs:subClassOf [ a owl:Restriction ; - owl:allValuesFrom nmdc:ProcessedSample ; - owl:onProperty nmdc:processed_sample_set ], + owl:allValuesFrom nmdc:FunctionalAnnotation ; + owl:onProperty nmdc:functional_annotation_set ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:WorkflowExecutionActivity ; + owl:onProperty nmdc:activity_set ], [ a owl:Restriction ; owl:allValuesFrom nmdc:DataObject ; owl:onProperty nmdc:data_object_set ], [ a owl:Restriction ; - owl:allValuesFrom nmdc:DissolvingActivity ; - owl:onProperty nmdc:dissolving_activity_set ], - [ a owl:Restriction ; - owl:allValuesFrom nmdc:MetabolomicsAnalysisActivity ; - owl:onProperty nmdc:metabolomics_analysis_activity_set ], - [ a owl:Restriction ; - owl:allValuesFrom nmdc:MetagenomeAnnotationActivity ; - owl:onProperty nmdc:metagenome_annotation_activity_set ], + owl:maxQualifiedCardinality 1 ; + owl:onClass linkml:String ; + owl:onProperty nmdc:etl_software_version ], [ a owl:Restriction ; - owl:allValuesFrom nmdc:MagsAnalysisActivity ; - owl:onProperty nmdc:mags_activity_set ], + owl:allValuesFrom nmdc:ReactionActivity ; + owl:onProperty nmdc:reaction_activity_set ], [ a owl:Restriction ; owl:allValuesFrom nmdc:MetagenomeSequencingActivity ; owl:onProperty nmdc:metagenome_sequencing_activity_set ], [ a owl:Restriction ; - owl:allValuesFrom nmdc:MaterialSample ; - owl:onProperty nmdc:material_sample_set ], - [ a owl:Restriction ; - owl:allValuesFrom nmdc:MetaproteomicsAnalysisActivity ; - owl:onProperty nmdc:metaproteomics_analysis_activity_set ], - [ a owl:Restriction ; - owl:allValuesFrom nmdc:Extraction ; - owl:onProperty nmdc:extraction_set ], - [ a owl:Restriction ; - owl:allValuesFrom nmdc:Pooling ; - owl:onProperty nmdc:pooling_set ], - [ a owl:Restriction ; - owl:allValuesFrom nmdc:LibraryPreparation ; - owl:onProperty nmdc:library_preparation_set ], - [ a owl:Restriction ; - owl:allValuesFrom nmdc:FieldResearchSite ; - owl:onProperty nmdc:field_research_site_set ], - [ a owl:Restriction ; - owl:allValuesFrom nmdc:ReadQcAnalysisActivity ; - owl:onProperty nmdc:read_qc_analysis_activity_set ], + owl:allValuesFrom nmdc:Biosample ; + owl:onProperty nmdc:biosample_set ], [ a owl:Restriction ; owl:allValuesFrom nmdc:MaterialSamplingActivity ; owl:onProperty nmdc:material_sampling_activity_set ], [ a owl:Restriction ; - owl:allValuesFrom nmdc:Study ; - owl:onProperty nmdc:study_set ], - [ a owl:Restriction ; - owl:allValuesFrom nmdc:GenomeFeature ; - owl:onProperty nmdc:genome_feature_set ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:etl_software_version ], - [ a owl:Restriction ; - owl:allValuesFrom nmdc:FunctionalAnnotation ; - owl:onProperty nmdc:functional_annotation_set ], + owl:allValuesFrom nmdc:MetaproteomicsAnalysisActivity ; + owl:onProperty nmdc:metaproteomics_analysis_activity_set ], [ a owl:Restriction ; owl:allValuesFrom nmdc:MetagenomeAssembly ; owl:onProperty nmdc:metagenome_assembly_set ], @@ -18358,28 +18327,58 @@ nmdc:Database a owl:Class, [ a owl:Restriction ; owl:allValuesFrom nmdc:NomAnalysisActivity ; owl:onProperty nmdc:nom_analysis_activity_set ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:MetabolomicsAnalysisActivity ; + owl:onProperty nmdc:metabolomics_analysis_activity_set ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:MagsAnalysisActivity ; + owl:onProperty nmdc:mags_activity_set ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:DissolvingActivity ; + owl:onProperty nmdc:dissolving_activity_set ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:OmicsProcessing ; + owl:onProperty nmdc:omics_processing_set ], [ a owl:Restriction ; owl:allValuesFrom nmdc:MetatranscriptomeActivity ; owl:onProperty nmdc:metatranscriptome_activity_set ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:FieldResearchSite ; + owl:onProperty nmdc:field_research_site_set ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:CollectingBiosamplesFromSite ; + owl:onProperty nmdc:collecting_biosamples_from_site_set ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:Pooling ; + owl:onProperty nmdc:pooling_set ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; owl:onProperty nmdc:date_created ], [ a owl:Restriction ; - owl:allValuesFrom nmdc:Biosample ; - owl:onProperty nmdc:biosample_set ], + owl:allValuesFrom nmdc:LibraryPreparation ; + owl:onProperty nmdc:library_preparation_set ], [ a owl:Restriction ; - owl:allValuesFrom nmdc:CollectingBiosamplesFromSite ; - owl:onProperty nmdc:collecting_biosamples_from_site_set ], + owl:allValuesFrom nmdc:ReadQcAnalysisActivity ; + owl:onProperty nmdc:read_qc_analysis_activity_set ], [ a owl:Restriction ; - owl:allValuesFrom nmdc:ReactionActivity ; - owl:onProperty nmdc:reaction_activity_set ], + owl:allValuesFrom nmdc:MetagenomeAnnotationActivity ; + owl:onProperty nmdc:metagenome_annotation_activity_set ], [ a owl:Restriction ; - owl:allValuesFrom nmdc:WorkflowExecutionActivity ; - owl:onProperty nmdc:activity_set ], + owl:allValuesFrom nmdc:ProcessedSample ; + owl:onProperty nmdc:processed_sample_set ], [ a owl:Restriction ; - owl:allValuesFrom nmdc:OmicsProcessing ; - owl:onProperty nmdc:omics_processing_set ] ; + owl:allValuesFrom nmdc:GenomeFeature ; + owl:onProperty nmdc:genome_feature_set ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:Study ; + owl:onProperty nmdc:study_set ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:Extraction ; + owl:onProperty nmdc:extraction_set ], + [ a owl:Restriction ; + owl:allValuesFrom nmdc:MaterialSample ; + owl:onProperty nmdc:material_sample_set ] ; skos:altLabel "NMDC metadata object" ; skos:definition "An abstract holder for any set of metadata and data. It does not need to correspond to an actual managed database top level holder class. When translated to JSON-Schema this is the 'root' object. It should contain pointers to other objects of interest" ; linkml:attributes "{}" . @@ -18537,13 +18536,13 @@ nmdc:NamedThing a owl:Class, owl:onClass linkml:Uriorcurie ; owl:onProperty nmdc:id ; owl:qualifiedCardinality 1 ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Uriorcurie ; + owl:onProperty nmdc:alternative_identifiers ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; owl:onProperty nmdc:name ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:Uriorcurie ; - owl:onProperty nmdc:alternative_identifiers ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; @@ -18652,25 +18651,25 @@ nmdc:QuantityValue a owl:Class, linkml:ClassDefinition ; rdfs:label "QuantityValue" ; rdfs:subClassOf [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:Double ; - owl:onProperty nmdc:has_numeric_value ], - [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; owl:onProperty nmdc:has_minimum_numeric_value ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:Float ; - owl:onProperty nmdc:has_maximum_numeric_value ], + owl:onClass linkml:String ; + owl:onProperty nmdc:has_raw_value ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass nmdc:Unit ; owl:onProperty nmdc:has_unit ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty nmdc:has_raw_value ], + owl:onClass linkml:Float ; + owl:onProperty nmdc:has_maximum_numeric_value ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass linkml:Double ; + owl:onProperty nmdc:has_numeric_value ], nmdc:AttributeValue ; skos:definition "A simple quantity, e.g. 2cm" ; skos:exactMatch ; diff --git a/src/schema/mixs.yaml b/src/schema/mixs.yaml index 193c6e15e4..c9473a96d9 100644 --- a/src/schema/mixs.yaml +++ b/src/schema/mixs.yaml @@ -33,164 +33,177 @@ subsets: description: A combination of a checklist and a package from_schema: http://w3id.org/mixs/terms enums: - door_comp_type_enum: + wall_loc_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - metal covered: {} - revolving: {} - sliding: {} - telescopic: {} - organism_count_enum: + north: {} + south: {} + east: {} + west: {} + wall_texture_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - ATP: {} - MPN: {} - other: {} - light_type_enum: + crows feet: {} + crows-foot stomp: {} + '': {} + double skip: {} + hawk and trowel: {} + knockdown: {} + popcorn: {} + orange peel: {} + rosebud stomp: {} + Santa-Fe texture: {} + skip trowel: {} + smooth: {} + stomp knockdown: {} + swirl: {} + door_type_metal_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - natural light: {} - electric light: {} - desk lamp: {} - flourescent lights: {} - none: {} - freq_clean_enum: + collapsible: {} + corrugated steel: {} + hollow: {} + rolling shutters: {} + steel plate: {} + water_feat_type_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - Daily: {} - Weekly: {} - Monthly: {} - Quarterly: {} - Annually: {} - other: {} - substructure_type_enum: + fountain: {} + pool: {} + standing feature: {} + stream: {} + waterfall: {} + organism_count_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - crawlspace: {} - slab on grade: {} - basement: {} - depos_env_enum: + ATP: {} + MPN: {} + other: {} + growth_habit_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - Continental - Alluvial: {} - Continental - Aeolian: {} - Continental - Fluvial: {} - Continental - Lacustrine: {} - Transitional - Deltaic: {} - Transitional - Tidal: {} - Transitional - Lagoonal: {} - Transitional - Beach: {} - Transitional - Lake: {} - Marine - Shallow: {} - Marine - Deep: {} - Marine - Reef: {} - Other - Evaporite: {} - Other - Glacial: {} - Other - Volcanic: {} - other: {} - shading_device_cond_enum: + erect: {} + semi-erect: {} + spreading: {} + prostrate: {} + room_samp_pos_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - damaged: {} - needs repair: {} - new: {} - rupture: {} - visible wear: {} - quad_pos_enum: + north corner: {} + south corner: {} + west corner: {} + east corner: {} + northeast corner: {} + northwest corner: {} + southeast corner: {} + southwest corner: {} + center: {} + rel_samp_loc_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - North side: {} - West side: {} - South side: {} - East side: {} - samp_floor_enum: + edge of car: {} + center of car: {} + under a seat: {} + wall_surf_treatment_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - 1st floor: {} - 2nd floor: {} - basement: {} - lobby: {} - floor_cond_enum: + painted: {} + wall paper: {} + no treatment: {} + paneling: {} + stucco: {} + fabric: {} + train_line_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - new: {} - visible wear: {} - needs repair: {} - damaged: {} - rupture: {} - specific_enum: + red: {} + green: {} + orange: {} + window_loc_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - operation: {} - as built: {} - construction: {} - bid: {} - design: {} - photos: {} - ceil_cond_enum: + north: {} + south: {} + east: {} + west: {} + ceil_texture_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - new: {} - visible wear: {} - needs repair: {} - damaged: {} - rupture: {} + crows feet: {} + crows-foot stomp: {} + double skip: {} + hawk and trowel: {} + knockdown: {} + popcorn: {} + orange peel: {} + rosebud stomp: {} + Santa-Fe texture: {} + skip trowel: {} + smooth: {} + stomp knockdown: {} + swirl: {} oxy_stat_samp_enum: from_schema: http://w3id.org/mixs/terms permissible_values: aerobic: {} anaerobic: {} other: {} - shading_device_type_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - bahama shutters: {} - exterior roll blind: {} - gambrel awning: {} - hood awning: {} - porchroller awning: {} - sarasota shutters: {} - slatted aluminum: {} - solid aluminum awning: {} - sun screen: {} - tree: {} - trellis: {} - venetian awning: {} - vis_media_enum: + plant_sex_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - photos: {} - videos: {} - commonly of the building: {} - site context (adjacent buildings, vegetation, terrain, streets): {} - interiors: {} - equipment: {} - 3D scans: {} - drawings_enum: + Androdioecious: {} + Androecious: {} + Androgynous: {} + Androgynomonoecious: {} + Andromonoecious: {} + Bisexual: {} + Dichogamous: {} + Diclinous: {} + Dioecious: {} + Gynodioecious: {} + Gynoecious: {} + Gynomonoecious: {} + Hermaphroditic: {} + Imperfect: {} + Monoclinous: {} + Monoecious: {} + Perfect: {} + Polygamodioecious: {} + Polygamomonoecious: {} + Polygamous: {} + Protandrous: {} + Protogynous: {} + Subandroecious: {} + Subdioecious: {} + Subgynoecious: {} + Synoecious: {} + Trimonoecious: {} + Trioecious: {} + Unisexual: {} + ext_wall_orient_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - operation: {} - as built: {} - construction: {} - bid: {} - design: {} - building navigation map: {} - diagram: {} - sketch: {} - window_cover_enum: + north: {} + south: {} + east: {} + west: {} + northeast: {} + southeast: {} + southwest: {} + northwest: {} + furniture_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - blinds: {} - curtains: {} - none: {} - hc_produced_enum: + cabinet: {} + chair: {} + desks: {} + sr_lithology_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - Oil: {} - Gas-Condensate: {} - Gas: {} - Bitumen: {} - Coalbed Methane: {} + Clastic: {} + Carbonate: {} + Coal: {} + Biosilicieous: {} other: {} train_stop_loc_enum: from_schema: http://w3id.org/mixs/terms @@ -198,73 +211,153 @@ enums: end: {} mid: {} downtown: {} - build_occup_type_enum: + substructure_type_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - office: {} - market: {} - restaurant: {} - residence: {} - school: {} - residential: {} - commercial: {} - low rise: {} - high rise: {} - wood framed: {} - health care: {} - airport: {} - sports complex: {} - rel_samp_loc_enum: + crawlspace: {} + slab on grade: {} + basement: {} + ceil_finish_mat_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - edge of car: {} - center of car: {} - under a seat: {} - occup_document_enum: + drywall: {} + mineral fibre: {} + tiles: {} + PVC: {} + plasterboard: {} + metal: {} + fiberglass: {} + stucco: {} + mineral wool/calcium silicate: {} + wood: {} + door_type_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - automated count: {} - estimate: {} - manual count: {} - videos: {} - weekday_enum: + composite: {} + metal: {} + wooden: {} + biol_stat_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - Monday: {} - Tuesday: {} - Wednesday: {} - Thursday: {} - Friday: {} - Saturday: {} - Sunday: {} - soil_horizon_enum: + wild: {} + natural: {} + semi-natural: {} + inbred line: {} + breeder's line: {} + hybrid: {} + clonal selection: {} + mutant: {} + window_vert_pos_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - O horizon: {} - A horizon: {} - E horizon: {} - B horizon: {} - C horizon: {} - R layer: {} - Permafrost: {} - M horizon: {} - room_loc_enum: + bottom: {} + middle: {} + top: {} + low: {} + high: {} + tillage_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - corner room: {} - interior room: {} - exterior wall: {} - indoor_surf_enum: + drill: {} + cutting disc: {} + ridge till: {} + strip tillage: {} + zonal tillage: {} + chisel: {} + tined: {} + mouldboard: {} + disc plough: {} + build_docs_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - cabinet: {} - ceiling: {} - counter top: {} - door: {} - shelving: {} - vent cover: {} - window: {} - wall: {} + building information model: {} + commissioning report: {} + complaint logs: {} + contract administration: {} + cost estimate: {} + janitorial schedules or logs: {} + maintenance plans: {} + schedule: {} + sections: {} + shop drawings: {} + submittals: {} + ventilation system: {} + windows: {} + window_type_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + single-hung sash window: {} + horizontal sash window: {} + fixed window: {} + mech_struc_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + subway: {} + coach: {} + carriage: {} + elevator: {} + escalator: {} + boat: {} + train: {} + car: {} + bus: {} + door_loc_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + north: {} + south: {} + east: {} + west: {} + shading_device_cond_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + damaged: {} + needs repair: {} + new: {} + rupture: {} + visible wear: {} + samp_floor_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + 1st floor: {} + 2nd floor: {} + basement: {} + lobby: {} + samp_collect_point_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + well: {} + test well: {} + drilling rig: {} + wellhead: {} + separator: {} + storage tank: {} + other: {} + sediment_type_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + biogenous: {} + cosmogenous: {} + hydrogenous: {} + lithogenous: {} + indoor_space_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + bedroom: {} + office: {} + bathroom: {} + foyer: {} + kitchen: {} + locker room: {} + hallway: {} + elevator: {} + handidness_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + ambidexterity: {} + left handedness: {} + mixed-handedness: {} + right handedness: {} door_type_wood_enum: from_schema: http://w3id.org/mixs/terms permissible_values: @@ -288,44 +381,25 @@ enums: sprung floor: {} wood-framed: {} concrete: {} - door_type_metal_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - collapsible: {} - corrugated steel: {} - hollow: {} - rolling shutters: {} - steel plate: {} - samp_weather_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - clear sky: {} - cloudy: {} - foggy: {} - hail: {} - rain: {} - snow: {} - sleet: {} - sunny: {} - windy: {} - ext_window_orient_enum: + floor_cond_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - north: {} - south: {} - east: {} - west: {} - northeast: {} - southeast: {} - southwest: {} - northwest: {} - sediment_type_enum: + new: {} + visible wear: {} + needs repair: {} + damaged: {} + rupture: {} + drawings_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - biogenous: {} - cosmogenous: {} - hydrogenous: {} - lithogenous: {} + operation: {} + as built: {} + construction: {} + bid: {} + design: {} + building navigation map: {} + diagram: {} + sketch: {} room_condt_enum: from_schema: http://w3id.org/mixs/terms permissible_values: @@ -335,438 +409,108 @@ enums: damaged: {} rupture: {} visible signs of mold/mildew: {} - sr_dep_env_enum: + hc_produced_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - Lacustine: {} - Fluvioldeltaic: {} - Fluviomarine: {} - Marine: {} + Oil: {} + Gas-Condensate: {} + Gas: {} + Bitumen: {} + Coalbed Methane: {} other: {} - wall_surf_treatment_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - painted: {} - wall paper: {} - no treatment: {} - paneling: {} - stucco: {} - fabric: {} - water_feat_type_enum: + surf_material_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - fountain: {} - pool: {} - standing feature: {} - stream: {} - waterfall: {} - window_mat_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - clad: {} - fiberglass: {} - metal: {} - vinyl: {} - wood: {} - furniture_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - cabinet: {} - chair: {} - desks: {} - building_setting_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - urban: {} - suburban: {} - exurban: {} - rural: {} - door_direct_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - inward: {} - outward: {} - sideways: {} - window_horiz_pos_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - left: {} - middle: {} - right: {} - samp_dis_stage_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - dissemination: {} - growth and reproduction: {} - infection: {} - inoculation: {} - penetration: {} - other: {} - door_cond_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - damaged: {} - needs repair: {} - new: {} - rupture: {} - visible wear: {} - filter_type_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - particulate air filter: {} - chemical air filter: {} - low-MERV pleated media: {} - HEPA: {} - electrostatic: {} - gas-phase or ultraviolet air treatments: {} - window_type_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - single-hung sash window: {} - horizontal sash window: {} - fixed window: {} - build_docs_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - building information model: {} - commissioning report: {} - complaint logs: {} - contract administration: {} - cost estimate: {} - janitorial schedules or logs: {} - maintenance plans: {} - schedule: {} - sections: {} - shop drawings: {} - submittals: {} - ventilation system: {} - windows: {} - cur_land_use_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - badlands: {} - cities: {} - conifers: - annotations: - originally: conifers (e.g. pine,spruce,fir,cypress) - examples: - - value: cypress - - value: fir - - value: pine - - value: spruce - crop trees: - annotations: - originally: crop trees (nuts,fruit,christmas trees,nursery trees) - examples: - - value: christmas trees - - value: fruit - - value: nursery trees - - value: nuts - farmstead: {} - gravel: {} - hardwoods: - annotations: - originally: hardwoods (e.g. oak,hickory,elm,aspen) - examples: - - value: aspen - - value: elm - - value: hickory - - value: oak - hayland: {} - horticultural plants: - annotations: - originally: horticultural plants (e.g. tulips) - examples: - - value: tulips - industrial areas: {} - intermixed hardwood and conifers: {} - marshlands: - annotations: - originally: marshlands (grass,sedges,rushes) - examples: - - value: grass - - value: rushes - - value: sedgees - meadows: - annotations: - originally: meadows (grasses,alfalfa,fescue,bromegrass,timothy) - examples: - - value: alfalfa - - value: bromegrass - - value: fescue - - value: grasses - - value: timothy - mines/quarries: {} - mudflats: {} - oil waste areas: {} - pastureland: - annotations: - originally: pastureland (grasslands used for livestock grazing) - comments: - - grasslands used for livestock grazing - permanent snow or ice: {} - rainforest: - annotations: - originally: rainforest (evergreen forest receiving greater than 406 cm annual rainfall) - comments: - - evergreen forest receiving greater than 406 cm annual rainfall - rangeland: {} - roads/railroads: {} - rock: {} - row crops: {} - saline seeps: {} - salt flats: {} - sand: {} - shrub crops: - annotations: - originally: shrub crops (blueberries,nursery ornamentals,filberts) - examples: - - value: blueberries - - value: filberts - - value: nursery ornamentals - shrub land: - annotations: - originally: shrub land (e.g. mesquite,sage-brush,creosote bush,shrub oak,eucalyptus) - examples: - - value: creosote bush - - value: eucalyptus - - value: mesquite - - value: sage-brush - - value: shrub oak - small grains: {} - successional shrub land: - annotations: - originally: successional shrub land (tree saplings,hazels,sumacs,chokecherry,shrub dogwoods,blackberries) - examples: - - value: blackberries - - value: chokecherry - - value: hazels - - value: shrub dogwoods - - value: sumacs - - value: tree saplings - swamp: - annotations: - originally: swamp (permanent or semi-permanent water body dominated by woody plants) - comments: - - permanent or semi-permanent water body dominated by woody plants - tropical: - annotations: - originally: tropical (e.g. mangrove,palms) - examples: - - value: mangrove - - value: palms - tundra: - annotations: - originally: tundra (mosses,lichens) - examples: - - value: lichens - - value: mosses - vegetable crops: {} - vine crops: - annotations: - originally: vine crops (grapes) - examples: - - value: grapes - host_sex_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - female: {} - hermaphrodite: {} - male: {} - neuter: {} - samp_collect_point_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - well: {} - test well: {} - drilling rig: {} - wellhead: {} - separator: {} - storage tank: {} - other: {} - train_line_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - red: {} - green: {} - orange: {} - mech_struc_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - subway: {} - coach: {} - carriage: {} - elevator: {} - escalator: {} - boat: {} - train: {} - car: {} - bus: {} - lithology_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - Basement: {} - Chalk: {} - Chert: {} - Coal: {} - Conglomerate: {} - Diatomite: {} - Dolomite: {} - Limestone: {} - Sandstone: {} - Shale: {} - Siltstone: {} - Volcanic: {} - other: {} - door_mat_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - aluminum: {} - cellular PVC: {} - engineered plastic: {} - fiberboard: {} - fiberglass: {} - metal: {} - thermoplastic alloy: {} - vinyl: {} - wood: {} - wood/plastic composite: {} - floor_water_mold_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - mold odor: {} - wet floor: {} - water stains: {} - wall discoloration: {} - floor discoloration: {} - ceiling discoloration: {} - peeling paint or wallpaper: {} - bulging walls: {} - condensation: {} - surf_air_cont_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - dust: {} - organic matter: {} - particulate matter: {} - volatile organic compounds: {} - biological contaminants: {} - radon: {} - nutrients: {} - biocides: {} - ceil_finish_mat_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - drywall: {} - mineral fibre: {} - tiles: {} - PVC: {} - plasterboard: {} + adobe: {} + carpet: {} + cinder blocks: {} + concrete: {} + hay bales: {} + glass: {} metal: {} - fiberglass: {} + paint: {} + plastic: {} + stainless steel: {} + stone: {} stucco: {} - mineral wool/calcium silicate: {} - wood: {} - samp_md_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - DF: {} - RT: {} - KB: {} - MSL: {} - other: {} - wall_finish_mat_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - plaster: {} - gypsum plaster: {} - veneer plaster: {} - gypsum board: {} tile: {} - terrazzo: {} - stone facing: {} - acoustical treatment: {} + vinyl: {} wood: {} - metal: {} - masonry: {} - floor_finish_mat_enum: + vis_media_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - tile: {} - wood strip or parquet: {} - carpet: {} - rug: {} - laminate wood: {} - lineoleum: {} - vinyl composition tile: {} - sheet vinyl: {} - stone: {} - bamboo: {} - cork: {} - terrazo: {} - concrete: {} - none: {} - sealed: {} - clear finish: {} - paint: {} - none or unfinished: {} - sr_kerog_type_enum: + photos: {} + videos: {} + commonly of the building: {} + site context (adjacent buildings, vegetation, terrain, streets): {} + interiors: {} + equipment: {} + 3D scans: {} + samp_dis_stage_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - Type I: {} - Type II: {} - Type III: {} - Type IV: {} + dissemination: {} + growth and reproduction: {} + infection: {} + inoculation: {} + penetration: {} other: {} - biotic_relationship_enum: + profile_position_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - free living: {} - parasite: {} - commensal: {} - symbiont: {} - room_connected_enum: + summit: {} + shoulder: {} + backslope: {} + footslope: {} + toeslope: {} + building_setting_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - attic: {} - bathroom: {} - closet: {} - conference room: {} - elevator: {} - examining room: {} - hallway: {} - kitchen: {} - mail room: {} - office: {} - stairwell: {} - growth_habit_enum: + urban: {} + suburban: {} + exurban: {} + rural: {} + sr_geol_age_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - erect: {} - semi-erect: {} - spreading: {} - prostrate: {} - samp_subtype_enum: + Archean: {} + Cambrian: {} + Carboniferous: {} + Cenozoic: {} + Cretaceous: {} + Devonian: {} + Jurassic: {} + Mesozoic: {} + Neogene: {} + Ordovician: {} + Paleogene: {} + Paleozoic: {} + Permian: {} + Precambrian: {} + Proterozoic: {} + Silurian: {} + Triassic: {} + other: {} + samp_capt_status_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - oil phase: {} - water phase: {} - biofilm: {} - not applicable: {} + active surveillance in response to an outbreak: {} + active surveillance not initiated by an outbreak: {} + farm sample: {} + market sample: {} other: {} - plant_growth_med_enum: + soil_horizon_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - other artificial liquid medium: {} - other artificial solid medium: {} - peat moss: {} - perlite: {} - pumice: {} - sand: {} - soil: {} - vermiculite: {} - water: {} - ext_wall_orient_enum: + O horizon: {} + A horizon: {} + E horizon: {} + B horizon: {} + C horizon: {} + R layer: {} + Permafrost: {} + M horizon: {} + ext_window_orient_enum: from_schema: http://w3id.org/mixs/terms permissible_values: north: {} @@ -777,6 +521,13 @@ enums: southeast: {} southwest: {} northwest: {} + heat_deliv_loc_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + north: {} + south: {} + east: {} + west: {} door_move_enum: from_schema: http://w3id.org/mixs/terms permissible_values: @@ -786,74 +537,113 @@ enums: rolling shutter: {} sliding: {} swinging: {} - ceil_type_enum: + floor_finish_mat_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - cathedral: {} - dropped: {} - concave: {} - barrel-shaped: {} - coffered: {} - cove: {} - stretched: {} - heat_cool_type_enum: + tile: {} + wood strip or parquet: {} + carpet: {} + rug: {} + laminate wood: {} + lineoleum: {} + vinyl composition tile: {} + sheet vinyl: {} + stone: {} + bamboo: {} + cork: {} + terrazo: {} + concrete: {} + none: {} + sealed: {} + clear finish: {} + paint: {} + none or unfinished: {} + tidal_stage_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - radiant system: {} - heat pump: {} - forced air system: {} - steam forced heat: {} - wood stove: {} - window_vert_pos_enum: + low tide: {} + ebb tide: {} + flood tide: {} + high tide: {} + train_stat_loc_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + south station above ground: {} + south station underground: {} + south station amtrak: {} + forest hills: {} + riverside: {} + lithology_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + Basement: {} + Chalk: {} + Chert: {} + Coal: {} + Conglomerate: {} + Diatomite: {} + Dolomite: {} + Limestone: {} + Sandstone: {} + Shale: {} + Siltstone: {} + Volcanic: {} + other: {} + hcr_geol_age_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + Archean: {} + Cambrian: {} + Carboniferous: {} + Cenozoic: {} + Cretaceous: {} + Devonian: {} + Jurassic: {} + Mesozoic: {} + Neogene: {} + Ordovician: {} + Paleogene: {} + Paleozoic: {} + Permian: {} + Precambrian: {} + Proterozoic: {} + Silurian: {} + Triassic: {} + other: {} + hcr_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - bottom: {} - middle: {} - top: {} - low: {} - high: {} - indoor_space_enum: + Oil Reservoir: {} + Gas Reservoir: {} + Oil Sand: {} + Coalbed: {} + Shale: {} + Tight Oil Reservoir: {} + Tight Gas Reservoir: {} + other: {} + build_occup_type_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - bedroom: {} office: {} - bathroom: {} - foyer: {} - kitchen: {} - locker room: {} - hallway: {} - elevator: {} - tidal_stage_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - low tide: {} - ebb tide: {} - flood tide: {} - high tide: {} - wall_texture_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - crows feet: {} - crows-foot stomp: {} - '': {} - double skip: {} - hawk and trowel: {} - knockdown: {} - popcorn: {} - orange peel: {} - rosebud stomp: {} - Santa-Fe texture: {} - skip trowel: {} - smooth: {} - stomp knockdown: {} - swirl: {} - door_type_enum: + market: {} + restaurant: {} + residence: {} + school: {} + residential: {} + commercial: {} + low rise: {} + high rise: {} + wood framed: {} + health care: {} + airport: {} + sports complex: {} + window_cover_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - composite: {} - metal: {} - wooden: {} - int_wall_cond_enum: + blinds: {} + curtains: {} + none: {} + ceil_cond_enum: from_schema: http://w3id.org/mixs/terms permissible_values: new: {} @@ -861,151 +651,142 @@ enums: needs repair: {} damaged: {} rupture: {} - profile_position_enum: + plant_growth_med_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - summit: {} - shoulder: {} - backslope: {} - footslope: {} - toeslope: {} - arch_struc_enum: + other artificial liquid medium: {} + other artificial solid medium: {} + peat moss: {} + perlite: {} + pumice: {} + sand: {} + soil: {} + vermiculite: {} + water: {} + samp_md_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - building: {} - shed: {} - home: {} - surf_material_enum: + DF: {} + RT: {} + KB: {} + MSL: {} + other: {} + door_direct_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - adobe: {} - carpet: {} - cinder blocks: {} - concrete: {} - hay bales: {} - glass: {} + inward: {} + outward: {} + sideways: {} + sr_dep_env_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + Lacustine: {} + Fluvioldeltaic: {} + Fluviomarine: {} + Marine: {} + other: {} + window_mat_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + clad: {} + fiberglass: {} metal: {} - paint: {} - plastic: {} - stainless steel: {} - stone: {} - stucco: {} - tile: {} vinyl: {} wood: {} - season_use_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - Spring: {} - Summer: {} - Fall: {} - Winter: {} - drainage_class_enum: + sr_kerog_type_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - very poorly: {} - poorly: {} - somewhat poorly: {} - moderately well: {} - well: {} - excessively drained: {} - wall_loc_enum: + Type I: {} + Type II: {} + Type III: {} + Type IV: {} + other: {} + window_horiz_pos_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - north: {} - south: {} - east: {} - west: {} - biol_stat_enum: + left: {} + middle: {} + right: {} + wall_finish_mat_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - wild: {} - natural: {} - semi-natural: {} - inbred line: {} - breeder's line: {} - hybrid: {} - clonal selection: {} - mutant: {} - sr_lithology_enum: + plaster: {} + gypsum plaster: {} + veneer plaster: {} + gypsum board: {} + tile: {} + terrazzo: {} + stone facing: {} + acoustical treatment: {} + wood: {} + metal: {} + masonry: {} + depos_env_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - Clastic: {} - Carbonate: {} - Coal: {} - Biosilicieous: {} + Continental - Alluvial: {} + Continental - Aeolian: {} + Continental - Fluvial: {} + Continental - Lacustrine: {} + Transitional - Deltaic: {} + Transitional - Tidal: {} + Transitional - Lagoonal: {} + Transitional - Beach: {} + Transitional - Lake: {} + Marine - Shallow: {} + Marine - Deep: {} + Marine - Reef: {} + Other - Evaporite: {} + Other - Glacial: {} + Other - Volcanic: {} other: {} - hcr_geol_age_enum: + indoor_surf_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - Archean: {} - Cambrian: {} - Carboniferous: {} - Cenozoic: {} - Cretaceous: {} - Devonian: {} - Jurassic: {} - Mesozoic: {} - Neogene: {} - Ordovician: {} - Paleogene: {} - Paleozoic: {} - Permian: {} - Precambrian: {} - Proterozoic: {} - Silurian: {} - Triassic: {} - other: {} - fao_class_enum: + cabinet: {} + ceiling: {} + counter top: {} + door: {} + shelving: {} + vent cover: {} + window: {} + wall: {} + floor_water_mold_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - Acrisols: {} - Andosols: {} - Arenosols: {} - Cambisols: {} - Chernozems: {} - Ferralsols: {} - Fluvisols: {} - Gleysols: {} - Greyzems: {} - Gypsisols: {} - Histosols: {} - Kastanozems: {} - Lithosols: {} - Luvisols: {} - Nitosols: {} - Phaeozems: {} - Planosols: {} - Podzols: {} - Podzoluvisols: {} - Rankers: {} - Regosols: {} - Rendzinas: {} - Solonchaks: {} - Solonetz: {} - Vertisols: {} - Yermosols: {} - wall_const_type_enum: + mold odor: {} + wet floor: {} + water stains: {} + wall discoloration: {} + floor discoloration: {} + ceiling discoloration: {} + peeling paint or wallpaper: {} + bulging walls: {} + condensation: {} + freq_clean_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - frame construction: {} - joisted masonry: {} - light noncombustible: {} - masonry noncombustible: {} - modified fire resistive: {} - fire resistive: {} - room_samp_pos_enum: + Daily: {} + Weekly: {} + Monthly: {} + Quarterly: {} + Annually: {} + other: {} + heat_cool_type_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - north corner: {} - south corner: {} - west corner: {} - east corner: {} - northeast corner: {} - northwest corner: {} - southeast corner: {} - southwest corner: {} - center: {} + radiant system: {} + heat pump: {} + forced air system: {} + steam forced heat: {} + wood stove: {} + door_comp_type_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + metal covered: {} + revolving: {} + sliding: {} + telescopic: {} window_cond_enum: from_schema: http://w3id.org/mixs/terms permissible_values: @@ -1014,71 +795,103 @@ enums: new: {} rupture: {} visible wear: {} - sr_geol_age_enum: + ceil_type_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - Archean: {} - Cambrian: {} - Carboniferous: {} - Cenozoic: {} - Cretaceous: {} - Devonian: {} - Jurassic: {} - Mesozoic: {} - Neogene: {} - Ordovician: {} - Paleogene: {} - Paleozoic: {} - Permian: {} - Precambrian: {} - Proterozoic: {} - Silurian: {} - Triassic: {} + cathedral: {} + dropped: {} + concave: {} + barrel-shaped: {} + coffered: {} + cove: {} + stretched: {} + biotic_relationship_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + free living: {} + parasite: {} + commensal: {} + symbiont: {} + samp_subtype_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + oil phase: {} + water phase: {} + biofilm: {} + not applicable: {} other: {} - tillage_enum: + shading_device_type_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - drill: {} - cutting disc: {} - ridge till: {} - strip tillage: {} - zonal tillage: {} - chisel: {} - tined: {} - mouldboard: {} - disc plough: {} - heat_deliv_loc_enum: + bahama shutters: {} + exterior roll blind: {} + gambrel awning: {} + hood awning: {} + porchroller awning: {} + sarasota shutters: {} + slatted aluminum: {} + solid aluminum awning: {} + sun screen: {} + tree: {} + trellis: {} + venetian awning: {} + specific_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - north: {} - south: {} - east: {} - west: {} - handidness_enum: + operation: {} + as built: {} + construction: {} + bid: {} + design: {} + photos: {} + season_use_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - ambidexterity: {} - left handedness: {} - mixed-handedness: {} - right handedness: {} - hcr_enum: + Spring: {} + Summer: {} + Fall: {} + Winter: {} + door_cond_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - Oil Reservoir: {} - Gas Reservoir: {} - Oil Sand: {} - Coalbed: {} - Shale: {} - Tight Oil Reservoir: {} - Tight Gas Reservoir: {} - other: {} - window_loc_enum: + damaged: {} + needs repair: {} + new: {} + rupture: {} + visible wear: {} + quad_pos_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - north: {} - south: {} - east: {} - west: {} + North side: {} + West side: {} + South side: {} + East side: {} + samp_weather_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + clear sky: {} + cloudy: {} + foggy: {} + hail: {} + rain: {} + snow: {} + sleet: {} + sunny: {} + windy: {} + room_connected_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + attic: {} + bathroom: {} + closet: {} + conference room: {} + elevator: {} + examining room: {} + hallway: {} + kitchen: {} + mail room: {} + office: {} + stairwell: {} gender_restroom_enum: from_schema: http://w3id.org/mixs/terms permissible_values: @@ -1088,69 +901,82 @@ enums: male: {} male and female: {} unisex: {} - ceil_texture_enum: + host_sex_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - crows feet: {} - crows-foot stomp: {} - double skip: {} - hawk and trowel: {} - knockdown: {} - popcorn: {} - orange peel: {} - rosebud stomp: {} - Santa-Fe texture: {} - skip trowel: {} - smooth: {} - stomp knockdown: {} - swirl: {} - train_stat_loc_enum: + female: {} + hermaphrodite: {} + male: {} + neuter: {} + weekday_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - south station above ground: {} - south station underground: {} - south station amtrak: {} - forest hills: {} - riverside: {} - plant_sex_enum: + Monday: {} + Tuesday: {} + Wednesday: {} + Thursday: {} + Friday: {} + Saturday: {} + Sunday: {} + surf_air_cont_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - Androdioecious: {} - Androecious: {} - Androgynous: {} - Androgynomonoecious: {} - Andromonoecious: {} - Bisexual: {} - Dichogamous: {} - Diclinous: {} - Dioecious: {} - Gynodioecious: {} - Gynoecious: {} - Gynomonoecious: {} - Hermaphroditic: {} - Imperfect: {} - Monoclinous: {} - Monoecious: {} - Perfect: {} - Polygamodioecious: {} - Polygamomonoecious: {} - Polygamous: {} - Protandrous: {} - Protogynous: {} - Subandroecious: {} - Subdioecious: {} - Subgynoecious: {} - Synoecious: {} - Trimonoecious: {} - Trioecious: {} - Unisexual: {} - door_loc_enum: + dust: {} + organic matter: {} + particulate matter: {} + volatile organic compounds: {} + biological contaminants: {} + radon: {} + nutrients: {} + biocides: {} + filter_type_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + particulate air filter: {} + chemical air filter: {} + low-MERV pleated media: {} + HEPA: {} + electrostatic: {} + gas-phase or ultraviolet air treatments: {} + light_type_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - north: {} - south: {} - east: {} - west: {} + natural light: {} + electric light: {} + desk lamp: {} + flourescent lights: {} + none: {} + arch_struc_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + building: {} + shed: {} + home: {} + wall_const_type_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + frame construction: {} + joisted masonry: {} + light noncombustible: {} + masonry noncombustible: {} + modified fire resistive: {} + fire resistive: {} + occup_document_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + automated count: {} + estimate: {} + manual count: {} + videos: {} + drainage_class_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + very poorly: {} + poorly: {} + somewhat poorly: {} + moderately well: {} + well: {} + excessively drained: {} room_type_enum: from_schema: http://w3id.org/mixs/terms permissible_values: @@ -1179,14 +1005,188 @@ enums: lockers: {} cafe: {} warehouse: {} - samp_capt_status_enum: + room_loc_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - active surveillance in response to an outbreak: {} - active surveillance not initiated by an outbreak: {} - farm sample: {} - market sample: {} - other: {} + corner room: {} + interior room: {} + exterior wall: {} + int_wall_cond_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + new: {} + visible wear: {} + needs repair: {} + damaged: {} + rupture: {} + cur_land_use_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + badlands: {} + cities: {} + conifers: + annotations: + originally: conifers (e.g. pine,spruce,fir,cypress) + examples: + - value: cypress + - value: fir + - value: pine + - value: spruce + crop trees: + annotations: + originally: crop trees (nuts,fruit,christmas trees,nursery trees) + examples: + - value: christmas trees + - value: fruit + - value: nursery trees + - value: nuts + farmstead: {} + gravel: {} + hardwoods: + annotations: + originally: hardwoods (e.g. oak,hickory,elm,aspen) + examples: + - value: aspen + - value: elm + - value: hickory + - value: oak + hayland: {} + horticultural plants: + annotations: + originally: horticultural plants (e.g. tulips) + examples: + - value: tulips + industrial areas: {} + intermixed hardwood and conifers: {} + marshlands: + annotations: + originally: marshlands (grass,sedges,rushes) + examples: + - value: grass + - value: rushes + - value: sedgees + meadows: + annotations: + originally: meadows (grasses,alfalfa,fescue,bromegrass,timothy) + examples: + - value: alfalfa + - value: bromegrass + - value: fescue + - value: grasses + - value: timothy + mines/quarries: {} + mudflats: {} + oil waste areas: {} + pastureland: + annotations: + originally: pastureland (grasslands used for livestock grazing) + comments: + - grasslands used for livestock grazing + permanent snow or ice: {} + rainforest: + annotations: + originally: rainforest (evergreen forest receiving greater than 406 cm annual rainfall) + comments: + - evergreen forest receiving greater than 406 cm annual rainfall + rangeland: {} + roads/railroads: {} + rock: {} + row crops: {} + saline seeps: {} + salt flats: {} + sand: {} + shrub crops: + annotations: + originally: shrub crops (blueberries,nursery ornamentals,filberts) + examples: + - value: blueberries + - value: filberts + - value: nursery ornamentals + shrub land: + annotations: + originally: shrub land (e.g. mesquite,sage-brush,creosote bush,shrub oak,eucalyptus) + examples: + - value: creosote bush + - value: eucalyptus + - value: mesquite + - value: sage-brush + - value: shrub oak + small grains: {} + successional shrub land: + annotations: + originally: successional shrub land (tree saplings,hazels,sumacs,chokecherry,shrub dogwoods,blackberries) + examples: + - value: blackberries + - value: chokecherry + - value: hazels + - value: shrub dogwoods + - value: sumacs + - value: tree saplings + swamp: + annotations: + originally: swamp (permanent or semi-permanent water body dominated by woody plants) + comments: + - permanent or semi-permanent water body dominated by woody plants + tropical: + annotations: + originally: tropical (e.g. mangrove,palms) + examples: + - value: mangrove + - value: palms + tundra: + annotations: + originally: tundra (mosses,lichens) + examples: + - value: lichens + - value: mosses + vegetable crops: {} + vine crops: + annotations: + originally: vine crops (grapes) + examples: + - value: grapes + door_mat_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + aluminum: {} + cellular PVC: {} + engineered plastic: {} + fiberboard: {} + fiberglass: {} + metal: {} + thermoplastic alloy: {} + vinyl: {} + wood: {} + wood/plastic composite: {} + fao_class_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + Acrisols: {} + Andosols: {} + Arenosols: {} + Cambisols: {} + Chernozems: {} + Ferralsols: {} + Fluvisols: {} + Gleysols: {} + Greyzems: {} + Gypsisols: {} + Histosols: {} + Kastanozems: {} + Lithosols: {} + Luvisols: {} + Nitosols: {} + Phaeozems: {} + Planosols: {} + Podzols: {} + Podzoluvisols: {} + Rankers: {} + Regosols: {} + Rendzinas: {} + Solonchaks: {} + Solonetz: {} + Vertisols: {} + Yermosols: {} slots: abs_air_humidity: annotations: @@ -11215,31 +11215,31 @@ slots: sequencing field: from_schema: http://w3id.org/mixs/terms abstract: true + environment field: + description: field describing environmental aspect of a sample + from_schema: http://w3id.org/mixs/terms + abstract: true + investigation field: + description: field describing aspect of the investigation/study to which the sample belongs + from_schema: http://w3id.org/mixs/terms + abstract: true has numeric value: from_schema: http://w3id.org/mixs/ranges owner: QuantityValue range: double - investigation field: - description: field describing aspect of the investigation/study to which the sample belongs + has raw value: + from_schema: http://w3id.org/mixs/ranges + string_serialization: '{has numeric value} {has unit}' + owner: QuantityValue + nucleic acid sequence source field: from_schema: http://w3id.org/mixs/terms abstract: true core field: description: basic fields from_schema: http://w3id.org/mixs/terms abstract: true - nucleic acid sequence source field: - from_schema: http://w3id.org/mixs/terms - abstract: true - environment field: - description: field describing environmental aspect of a sample - from_schema: http://w3id.org/mixs/terms - abstract: true has unit: description: Example "m" from_schema: http://w3id.org/mixs/ranges owner: QuantityValue - has raw value: - from_schema: http://w3id.org/mixs/ranges - string_serialization: '{has numeric value} {has unit}' - owner: QuantityValue source_file: assets/other_mixs_yaml_files/mixs_template.yaml