qsub_HardSweep

#### submit_Admixture job####
#!/bin/bash                         #-- what is the language of this shell

#$ -cwd
# error = Merged with joblog
#$ -o joblog.$JOB_ID.$TASK_ID
#$ -j y
## Edit the line below as needed:
#$ -l h_rt=200:00:00,h_data=13G,highp
## Modify the parallel environment
## and the number of cores as needed:
#$ -pe shared 1
# Notify when
##$ -m e
#  Job array indexes
#$ -t 1-10:1

# echo job info on joblog:
echo "Job $JOB_ID started on:   " `hostname -s`
echo "Job $JOB_ID started on:   " `date `
echo " "


# load the job environment:
. /u/local/Modules/default/init/modules.sh
module load anaconda3
module load python/3.7.3

#activate slim environment
source /u/local/apps/anaconda3/2020.11/etc/profile.d/conda.sh
conda activate slim

is=(null ${is[@]}) # this pads the file with an extra line in the beginning. 
i=${is[$SGE_TASK_ID]}
echo $i


id=$SGE_TASK_ID 

slim -v

sampleSize=177
PF=1
recomb_rate=5e-9

for introduceMut in 280 500 1000; do
for AgeSweep in 40 100 250; do
for s in 0.01 0.0075; do #0.001 0.005 0.1 0.025 0.05
	file=tmp_intermediate_files/HardSweep_tmp_${id}.txt
	echo ${file}
	bash run_HardSweep.sh ${file} $sampleSize $id $introduceMut $PF  $recomb_rate $AgeSweep $s
done
done
done


# echo job info on joblog:
echo "Job $JOB_ID ended on:   " `hostname -s`
echo "Job $JOB_ID ended on:   " `date `
echo " "