Make.sh

#!/bin/bash
#

Check_Installation() {
    if ! [ -x "$(command -v "$1")" ]; then
        echo -e "\033[6;31mERROR\033[0;31m: $1 is not installed!" >&2;
        exit 1;
    else
        echo -e "\033[1;32mSUCCESS!\033[0m";
    fi
}


echo -e "\033[1mStart Installation...\033[0m"


python3.6 -m pip install --upgrade pip
python3.6 -m pip install  -r requirements.txt

conda install -c https://conda.anaconda.org/biocore scikit-bio --yes
conda install -c https://conda.anaconda.org/biocore scikit-bio --yes
conda install -c etetoolkit ete3 ete_toolchain --yes
conda install -c anaconda scipy=1.7.3 --yes
conda install -c conda-forge xgboost=1.5.1 --yes

conda install -c bioconda geco3 --yes
conda install -c bioconda entrez-direct --yes
conda install -c cobilab gto --yes 

cd scripts/ || exit;
chmod +x ./*.sh

echo -e "\033[1;32mSuccessfully installed tools!\033[0m";