.pre-commit-config.yaml

repos:
- repo: https://github.com/pre-commit/pre-commit-hooks
  rev: v5.0.0
  hooks:
  - id: check-yaml
  - id: check-toml
  - id: end-of-file-fixer
    exclude: .*\.svg$
  - id: trailing-whitespace
- repo: https://github.com/macisamuele/language-formatters-pre-commit-hooks
  rev: v2.14.0
  hooks:
  - id: pretty-format-yaml
    args: [--autofix]
  - id: pretty-format-toml
    args: [--autofix, --trailing-commas]
    exclude: Cargo.lock
- repo: https://github.com/astral-sh/ruff-pre-commit
  rev: v0.9.1
  hooks:
  - id: ruff
    args: [--fix]
    types_or: [python, pyi, jupyter]
  - id: ruff-format
    types_or: [python, pyi, jupyter]
- repo: https://github.com/RobertCraigie/pyright-python
  rev: v1.1.391
  hooks:
  - id: pyright
- repo: https://github.com/doublify/pre-commit-rust
  rev: v1.0
  hooks:
  - id: cargo-check
  - id: clippy
- repo: local
  hooks:
  - id: fmt
    name: fmt
    description: Format files with cargo fmt
    entry: cargo +nightly fmt --
    language: system
    types: [rust]
    args: []
  - id: nbsetup
    name: nbsetup
    description: Add install preamble to Jupyter Notebooks
    entry: python scripts/nbsetup.py
    language: python
    types: [jupyter]
    additional_dependencies: [nbformat]
    args: []
- repo: https://github.com/flying-sheep/bibfmt
  rev: v4.3.0
  hooks:
  - id: bibfmt
    args:
    - --sort-by-bibkey
    - --drop=abstract
- repo: https://github.com/kynan/nbstripout
  rev: 0.8.1
  hooks:
  - id: nbstripout
    args:
    - --keep-output
- repo: https://github.com/codespell-project/codespell
  rev: v2.3.0
  hooks:
  - id: codespell
    additional_dependencies:
    - tomli
    exclude_types: [jupyter]  # GitHub action will run on Notebooks