diff --git a/.github/workflows/scheduled.yaml b/.github/workflows/scheduled.yaml index f884bfb1..bdaa1b83 100644 --- a/.github/workflows/scheduled.yaml +++ b/.github/workflows/scheduled.yaml @@ -38,6 +38,8 @@ jobs: strategy: ${{ matrix.test-strategy }} additional-env-vars: | PKG_SYSREQS_DRY_RUN=true + extra-deps: | + matrixStats (>= 1.5.0);teal.slice (>= 0.5.1.9021) branch-cleanup: if: > github.event_name == 'schedule' || ( diff --git a/DESCRIPTION b/DESCRIPTION index d824d467..d34d8f67 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -32,8 +32,8 @@ Depends: goshawk (>= 0.1.18), R (>= 3.6), shiny (>= 1.6.0), - teal (>= 0.15.2.9079), - teal.transform (>= 0.5.0.9015) + teal (>= 0.15.2.9103), + teal.transform (>= 0.5.0.9021) Imports: checkmate (>= 2.1.0), colourpicker, @@ -47,20 +47,20 @@ Imports: shinyjs, shinyvalidate, stats, - teal.code (>= 0.5.0.9012), - teal.logger (>= 0.3.0.9003), - teal.reporter (>= 0.2.0), - teal.widgets (>= 0.4.0) + teal.code (>= 0.5.0.9022), + teal.logger (>= 0.3.0.9004), + teal.reporter (>= 0.3.1.9023), + teal.widgets (>= 0.4.2.9025) Suggests: knitr (>= 1.42), nestcolor (>= 0.1.0), rmarkdown (>= 2.23), rvest (>= 1.0.0), - shinytest2, + shinytest2 (>= 0.3.2), stringr (>= 1.4.1), - teal.data (>= 0.6.0.9015), - tern (>= 0.7.10), - testthat (>= 3.0.4), + teal.data (>= 0.6.0.9025), + tern (>= 0.9.7), + testthat (>= 3.2.0), utils VignetteBuilder: knitr, @@ -68,7 +68,7 @@ VignetteBuilder: Remotes: insightsengineering/goshawk Config/Needs/verdepcheck: insightsengineering/goshawk, rstudio/shiny, - insightsengineering/teal, insightsengineering/teal.transform, + insightsengineering/teal, insightsengineering/teal.slice, insightsengineering/teal.transform, mllg/checkmate, daattali/colourpicker, tidyverse/dplyr, rstudio/DT, tidyverse/ggplot2, r-lib/lifecycle, r-lib/rlang, daattali/shinyjs, rstudio/shinyvalidate, insightsengineering/teal.code, diff --git a/man/tm_g_gh_boxplot.Rd b/man/tm_g_gh_boxplot.Rd index 01a20250..12d0e068 100644 --- a/man/tm_g_gh_boxplot.Rd +++ b/man/tm_g_gh_boxplot.Rd @@ -91,10 +91,10 @@ in the legend.} \item{alpha}{numeric vector to define transparency of plotted points.} -\item{pre_output}{(\code{shiny.tag}, optional)\cr +\item{pre_output}{(\code{shiny.tag}) optional,\cr with text placed before the output to put the output into context. For example a title.} -\item{post_output}{(\code{shiny.tag}, optional) with text placed after the output to put the output +\item{post_output}{(\code{shiny.tag}) optional, with text placed after the output to put the output into context. For example the \code{\link[shiny:helpText]{shiny::helpText()}} elements are useful.} \item{transformators}{(\code{list} of \code{teal_transform_module}) that will be applied to transform module's data input. diff --git a/man/tm_g_gh_correlationplot.Rd b/man/tm_g_gh_correlationplot.Rd index 77a4b933..9e039460 100644 --- a/man/tm_g_gh_correlationplot.Rd +++ b/man/tm_g_gh_correlationplot.Rd @@ -117,10 +117,10 @@ naming the label for the arbitrary horizontal lines.} \item{reg_text_size}{font size control for regression line annotations.} -\item{pre_output}{(\code{shiny.tag}, optional)\cr +\item{pre_output}{(\code{shiny.tag}) optional,\cr with text placed before the output to put the output into context. For example a title.} -\item{post_output}{(\code{shiny.tag}, optional) with text placed after the output to put the output +\item{post_output}{(\code{shiny.tag}) optional, with text placed after the output to put the output into context. For example the \code{\link[shiny:helpText]{shiny::helpText()}} elements are useful.} \item{transformators}{(\code{list} of \code{teal_transform_module}) that will be applied to transform module's data input. diff --git a/man/tm_g_gh_density_distribution_plot.Rd b/man/tm_g_gh_density_distribution_plot.Rd index a303e809..cc16697e 100644 --- a/man/tm_g_gh_density_distribution_plot.Rd +++ b/man/tm_g_gh_density_distribution_plot.Rd @@ -69,10 +69,10 @@ naming the label for the arbitrary horizontal lines.} \item{rotate_xlab}{45 degree rotation of \code{x-axis} values.} -\item{pre_output}{(\code{shiny.tag}, optional)\cr +\item{pre_output}{(\code{shiny.tag}) optional,\cr with text placed before the output to put the output into context. For example a title.} -\item{post_output}{(\code{shiny.tag}, optional) with text placed after the output to put the output +\item{post_output}{(\code{shiny.tag}) optional, with text placed after the output to put the output into context. For example the \code{\link[shiny:helpText]{shiny::helpText()}} elements are useful.} \item{transformators}{(\code{list} of \code{teal_transform_module}) that will be applied to transform module's data input. diff --git a/man/tm_g_gh_lineplot.Rd b/man/tm_g_gh_lineplot.Rd index 82af5077..a2b6c6cd 100644 --- a/man/tm_g_gh_lineplot.Rd +++ b/man/tm_g_gh_lineplot.Rd @@ -101,10 +101,10 @@ Default value is waive().} \item{dodge}{controls the position dodge of error bar} -\item{pre_output}{(\code{shiny.tag}, optional)\cr +\item{pre_output}{(\code{shiny.tag}) optional,\cr with text placed before the output to put the output into context. For example a title.} -\item{post_output}{(\code{shiny.tag}, optional) with text placed after the output to put the output +\item{post_output}{(\code{shiny.tag}) optional, with text placed after the output to put the output into context. For example the \code{\link[shiny:helpText]{shiny::helpText()}} elements are useful.} \item{count_threshold}{minimum count of observations (as listed in the output table) to plot diff --git a/man/tm_g_gh_scatterplot.Rd b/man/tm_g_gh_scatterplot.Rd index 08073e75..31568ba3 100644 --- a/man/tm_g_gh_scatterplot.Rd +++ b/man/tm_g_gh_scatterplot.Rd @@ -74,10 +74,10 @@ TRUE.} \item{reg_text_size}{font size control for regression line annotations.} -\item{pre_output}{(\code{shiny.tag}, optional)\cr +\item{pre_output}{(\code{shiny.tag}) optional,\cr with text placed before the output to put the output into context. For example a title.} -\item{post_output}{(\code{shiny.tag}, optional) with text placed after the output to put the output +\item{post_output}{(\code{shiny.tag}) optional, with text placed after the output to put the output into context. For example the \code{\link[shiny:helpText]{shiny::helpText()}} elements are useful.} \item{transformators}{(\code{list} of \code{teal_transform_module}) that will be applied to transform module's data input. diff --git a/man/tm_g_gh_spaghettiplot.Rd b/man/tm_g_gh_spaghettiplot.Rd index 512baaaf..b588f6c6 100644 --- a/man/tm_g_gh_spaghettiplot.Rd +++ b/man/tm_g_gh_spaghettiplot.Rd @@ -114,10 +114,10 @@ naming the label for the arbitrary horizontal lines.} \item{hline_vars_labels}{a character vector naming the labels for the additional horizontal lines that will appear in the legend.} -\item{pre_output}{(\code{shiny.tag}, optional)\cr +\item{pre_output}{(\code{shiny.tag}) optional,\cr with text placed before the output to put the output into context. For example a title.} -\item{post_output}{(\code{shiny.tag}, optional) with text placed after the output to put the output +\item{post_output}{(\code{shiny.tag}) optional, with text placed after the output to put the output into context. For example the \code{\link[shiny:helpText]{shiny::helpText()}} elements are useful.} \item{transformators}{(\code{list} of \code{teal_transform_module}) that will be applied to transform module's data input.