brainpower.yaml

study_id: BrainPower
study_accession:  
study_title: The Promotion of Physical Activity for the Prevention of Alzheimer�s Disease in Adults with Down Syndrome
study_desc: 
url: https://includedcc.org/studies/brainpower
identifier_prefix: https://includedcc.org/fhir/brainpower
dd_prefix: https://includedcc.org/fhir
output_filename: brainpower
id_colname: Participant ID

projection_version: current
whistle_src: _entry.wstl

# This is where the harmony file will be written 
code_harmonization_dir: harmony/brainpower

# This is the prefix associated with the final study harmony file
# This must match whatever is used in the whistle code (which is data-harmony
# at this time)
harmony_prefix: data-harmony

# List each file required to support the level of harmonized terms required
# by this project. 
code_harmonization: 
 - harmony/study.csv
 - harmony/dataset.csv
 - harmony/demographics.csv
 - harmony/encounter.csv
 - harmony/misc.csv
 - harmony/specimen.csv
 - harmony/dsc-conditions.csv
projections: 
  study: projector/study_only
  dataset: projector/dataset
  harmonized: projector/harmonized

require_official: True
curies:
  http://purl.obolibrary.org/obo/hp.owl: HP
  http://purl.obolibrary.org/obo/mondo.owl: MONDO
  http://purl.obolibrary.org/obo/maxo.owl: MAXO
  http://purl.obolibrary.org/obo/ncit.owl: NCIT
projector_lib: projector/study_only/current
env:
  local: dev
  dev: dev
  qa: qa-kf2-inc
  prod: prod-kf2-inc
dataset:
  study_meta: 
    filename: data/tables/BrainPower/study.csv
    data_dictionary:
      filename: data/dd/study.csv
  study_contacts:
    hidden: true
    filename: data/tables/BrainPower/contacts.csv
    data_dictionary: 
      filename: data/dd/contacts.csv
    embed:
      dataset: study_meta
      colname: Study Code
  participant:
    filename: data/tables/BrainPower/BrainPower_Participants_v6.csv
    data_dictionary: 
      filename: data/dd/participant.csv
  condition:
    filename: data/tables/BrainPower/BrainPower_Conditions_v6.csv
    embed:
      dataset: participant
      colname: Participant External ID
    data_dictionary: 
      filename: data/dd/condition.csv
  encounter:
    hidden: true
    filename: data/tables/BrainPower/encounter.csv    
    data_dictionary: 
      filename: data/dd/encounter.csv
active_tables:
  ALL: true
#  family: true