From 600cfb134f0c025033ab7e235c65d9e105c4781c Mon Sep 17 00:00:00 2001
From: cgreene <cgreene@users.noreply.github.com>
Date: Mon, 20 May 2024 18:56:46 +0000
Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20greenela?=
 =?UTF-8?q?b/greenelab.com@430db52fac36245128fba9e5413b32725a611691=20?=
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MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

---
 2019/01/29/infant-in-arms.html                |  10 +-
 2019/04/06/the-harassment-tax.html            |  10 +-
 .../01/why-do-we-have-application-fees.html   |  10 +-
 2020/10/19/DL-workshop.html                   |  10 +-
 blog/index.html                               |   8 +-
 feed.xml                                      |   8 +-
 members/casey-greene.html                     |  38 +++++-
 redirects.json                                |   2 +-
 sitemap.xml                                   | 112 +++++++++---------
 9 files changed, 119 insertions(+), 89 deletions(-)

diff --git a/2019/01/29/infant-in-arms.html b/2019/01/29/infant-in-arms.html
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     <span data-tooltip="Last updated on">
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-      <span>April 29, 2024</span>
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diff --git a/2019/04/06/the-harassment-tax.html b/2019/04/06/the-harassment-tax.html
index 01aeab45..4acc5caf 100644
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@@ -667,7 +667,7 @@ <h1 class="center">The Harassment Tax</h1>
   
     <span data-tooltip="Last updated on">
       <i class="icon fa-solid fa-clock-rotate-left"></i>
-      <span>April 29, 2024</span>
+      <span>May 20, 2024</span>
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diff --git a/2019/05/01/why-do-we-have-application-fees.html b/2019/05/01/why-do-we-have-application-fees.html
index 148a1da0..5cbcbaae 100644
--- a/2019/05/01/why-do-we-have-application-fees.html
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@@ -68,10 +68,10 @@
 
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@@ -668,7 +668,7 @@ <h1 class="center">Why do we have application fees?</h1>
   
     <span data-tooltip="Last updated on">
       <i class="icon fa-solid fa-clock-rotate-left"></i>
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+      <span>May 20, 2024</span>
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 </div>
diff --git a/2020/10/19/DL-workshop.html b/2020/10/19/DL-workshop.html
index 6a9917cf..ae7d4717 100644
--- a/2020/10/19/DL-workshop.html
+++ b/2020/10/19/DL-workshop.html
@@ -68,10 +68,10 @@
 
   <meta name="author" content="alex-lee">
   <meta property="og:type" content="article">
-  <meta property="og:updated_time" content="2024-04-29T14:40:42+00:00">
+  <meta property="og:updated_time" content="2024-05-20T18:55:21+00:00">
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     "description": "Where data and biology meet",
@@ -667,7 +667,7 @@ <h1 class="center">Deep Learning in Biology Workshop</h1>
   
     <span data-tooltip="Last updated on">
       <i class="icon fa-solid fa-clock-rotate-left"></i>
-      <span>April 29, 2024</span>
+      <span>May 20, 2024</span>
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diff --git a/blog/index.html b/blog/index.html
index 5f57c9ca..9d4f7de4 100644
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     <span data-tooltip="Last updated on">
       <i class="icon fa-solid fa-clock-rotate-left"></i>
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@@ -913,7 +913,7 @@ <h3 id="2019">2019</h3>
   
     <span data-tooltip="Last updated on">
       <i class="icon fa-solid fa-clock-rotate-left"></i>
-      <span>April 29, 2024</span>
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@@ -993,7 +993,7 @@ <h3 id="2019">2019</h3>
   
     <span data-tooltip="Last updated on">
       <i class="icon fa-solid fa-clock-rotate-left"></i>
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+      <span>May 20, 2024</span>
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diff --git a/feed.xml b/feed.xml
index c43f15ba..3d730e5a 100644
--- a/feed.xml
+++ b/feed.xml
@@ -1,4 +1,4 @@
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+<?xml version="1.0" encoding="utf-8"?><feed xmlns="http://www.w3.org/2005/Atom" ><generator uri="https://jekyllrb.com/" version="4.3.2">Jekyll</generator><link href="https://greenelab.com/feed.xml" rel="self" type="application/atom+xml" /><link href="https://greenelab.com/" rel="alternate" type="text/html" /><updated>2024-05-20T18:56:37+00:00</updated><id>https://greenelab.com/feed.xml</id><title type="html">The Greene Lab</title><subtitle>Where data and biology meet</subtitle><entry><title type="html">Deep Learning in Biology Workshop</title><link href="https://greenelab.com/2020/10/19/DL-workshop.html" rel="alternate" type="text/html" title="Deep Learning in Biology Workshop" /><published>2020-10-19T00:00:00+00:00</published><updated>2024-05-20T18:55:21+00:00</updated><id>https://greenelab.com/2020/10/19/DL-workshop</id><content type="html" xml:base="https://greenelab.com/2020/10/19/DL-workshop.html"><![CDATA[<h2 id="discovering-the-beauty-of-math-and-the-fun-of-computer-science">Discovering the beauty of math and the fun of computer science</h2>
 
 <p>My mother saw math in everything around us; in the geometry of a bridge we drove across, in the permutations of numbers that make up my birthday.
 Growing up she would get excited as she explained the solution to a math problem.
@@ -66,7 +66,7 @@ You can find my current research projects on my <a href="https://github.com/ajle
       " alt="figure image" loading="lazy" onerror="this.src = '/images/fallback.svg'; this.onerror = null;" />
   </a>
   
-</figure>]]></content><author><name>alex-lee</name></author><category term="deep learning" /><category term="workshop" /><summary type="html"><![CDATA[Discovering the beauty of math and the fun of computer science]]></summary></entry><entry><title type="html">Why do we have application fees?</title><link href="https://greenelab.com/2019/05/01/why-do-we-have-application-fees.html" rel="alternate" type="text/html" title="Why do we have application fees?" /><published>2019-05-01T00:00:00+00:00</published><updated>2024-04-29T14:40:42+00:00</updated><id>https://greenelab.com/2019/05/01/why-do-we-have-application-fees</id><content type="html" xml:base="https://greenelab.com/2019/05/01/why-do-we-have-application-fees.html"><![CDATA[<h2 id="context">Context</h2>
+</figure>]]></content><author><name>alex-lee</name></author><category term="deep learning" /><category term="workshop" /><summary type="html"><![CDATA[Discovering the beauty of math and the fun of computer science]]></summary></entry><entry><title type="html">Why do we have application fees?</title><link href="https://greenelab.com/2019/05/01/why-do-we-have-application-fees.html" rel="alternate" type="text/html" title="Why do we have application fees?" /><published>2019-05-01T00:00:00+00:00</published><updated>2024-05-20T18:55:21+00:00</updated><id>https://greenelab.com/2019/05/01/why-do-we-have-application-fees</id><content type="html" xml:base="https://greenelab.com/2019/05/01/why-do-we-have-application-fees.html"><![CDATA[<h2 id="context">Context</h2>
 
 <p>I’m considering this question in regards to PhD programs in the biological sciences.
 For a brief bit of context, these are programs where trainees, once they join a program, have their tuition paid for and also receive a stipend.
@@ -126,7 +126,7 @@ I am posting this to the blog in the hopes that another institution will find th
 
 <p><em>Update 5/1/19:</em></p>
 
-<p>After posting, I was pointed to <a href="http://dailynous.com/2017/10/04/carnegie-mellon-philosophy-eliminates-application-fee-guest-post-kevin-zollman/">CMU’s Department of Philosophy’s elimination of application fees in 2017</a>.</p>]]></content><author><name>casey-greene</name></author><summary type="html"><![CDATA[Context]]></summary></entry><entry><title type="html">The Harassment Tax</title><link href="https://greenelab.com/2019/04/06/the-harassment-tax.html" rel="alternate" type="text/html" title="The Harassment Tax" /><published>2019-04-06T00:00:00+00:00</published><updated>2024-04-29T14:40:42+00:00</updated><id>https://greenelab.com/2019/04/06/the-harassment-tax</id><content type="html" xml:base="https://greenelab.com/2019/04/06/the-harassment-tax.html"><![CDATA[<p><em>TL;DR: <a href="https://twitter.com/mhendr1cks/status/1112893604010262530">This twitter thread from Michael Hendricks</a> is on the money.</em></p>
+<p>After posting, I was pointed to <a href="http://dailynous.com/2017/10/04/carnegie-mellon-philosophy-eliminates-application-fee-guest-post-kevin-zollman/">CMU’s Department of Philosophy’s elimination of application fees in 2017</a>.</p>]]></content><author><name>casey-greene</name></author><summary type="html"><![CDATA[Context]]></summary></entry><entry><title type="html">The Harassment Tax</title><link href="https://greenelab.com/2019/04/06/the-harassment-tax.html" rel="alternate" type="text/html" title="The Harassment Tax" /><published>2019-04-06T00:00:00+00:00</published><updated>2024-05-20T18:55:21+00:00</updated><id>https://greenelab.com/2019/04/06/the-harassment-tax</id><content type="html" xml:base="https://greenelab.com/2019/04/06/the-harassment-tax.html"><![CDATA[<p><em>TL;DR: <a href="https://twitter.com/mhendr1cks/status/1112893604010262530">This twitter thread from Michael Hendricks</a> is on the money.</em></p>
 
 <p>In a recent article in Science about the National Academies developing a procedure to expel sexual harassers, Dr. Robert Weinberg (<a href="https://biology.mit.edu/profile/robert-a-weinberg/">Member, Whitehead Institute; and Daniel K. Ludwig Professor for Cancer Research in the Department of Biology at MIT</a>) was quoted as saying, “Before there is a mad rush to approve such an ejection procedure, it might be useful to ask whether sexual harassment by a member has anything whatsoever to do with their credibility as a scientist and the soundness of their research accomplishments—the criteria that were used to elect them in the first place.”
 When scientists reach these milestones by imposing costs on others through falsification, harassment, or other means they are externalizing costs onto the rest of the field.
@@ -169,7 +169,7 @@ The Chancellor of Vanderbilt University, Nick Zeppos, has failed to support her
 It conspicuously ignores Dr. McLaughlin, a <a href="http://news.mit.edu/2018/media-lab-disobedience-award-winners-announced-1128">winner of the MIT Disobedience Prize</a>.</p>
 
 <p>P.S. I gave a talk at UAB recently, where I <a href="https://upenn.box.com/s/hqnry3kd75hg5upjml2z82g4bocgbb9z">included some slides</a> (+ a new bonus slide with Dr. Weinberg’s quotation for a seminar I’m giving at NYU on Monday, April 8).
-You are welcome to use them in your own talks (note the arrangement, which is my own, is CC0 licensed, but certain content is by others and not openly licensed and so uses of those portions must fall under fair use).</p>]]></content><author><name>casey-greene</name></author><summary type="html"><![CDATA[TL;DR: This twitter thread from Michael Hendricks is on the money.]]></summary></entry><entry><title type="html">Infant in arms: Some thoughts from a father traveling solo with an infant</title><link href="https://greenelab.com/2019/01/29/infant-in-arms.html" rel="alternate" type="text/html" title="Infant in arms: Some thoughts from a father traveling solo with an infant" /><published>2019-01-29T00:00:00+00:00</published><updated>2024-04-29T14:40:42+00:00</updated><id>https://greenelab.com/2019/01/29/infant-in-arms</id><content type="html" xml:base="https://greenelab.com/2019/01/29/infant-in-arms.html"><![CDATA[<h2 id="brief-context">Brief Context</h2>
+You are welcome to use them in your own talks (note the arrangement, which is my own, is CC0 licensed, but certain content is by others and not openly licensed and so uses of those portions must fall under fair use).</p>]]></content><author><name>casey-greene</name></author><summary type="html"><![CDATA[TL;DR: This twitter thread from Michael Hendricks is on the money.]]></summary></entry><entry><title type="html">Infant in arms: Some thoughts from a father traveling solo with an infant</title><link href="https://greenelab.com/2019/01/29/infant-in-arms.html" rel="alternate" type="text/html" title="Infant in arms: Some thoughts from a father traveling solo with an infant" /><published>2019-01-29T00:00:00+00:00</published><updated>2024-05-20T18:55:21+00:00</updated><id>https://greenelab.com/2019/01/29/infant-in-arms</id><content type="html" xml:base="https://greenelab.com/2019/01/29/infant-in-arms.html"><![CDATA[<h2 id="brief-context">Brief Context</h2>
 
 <p>As a scientist, I often attend conferences/meetings/etc.
 Making this work as a childless, married academic husband was reasonably straightforward for my wife and me.
diff --git a/members/casey-greene.html b/members/casey-greene.html
index b8a99905..841949d2 100644
--- a/members/casey-greene.html
+++ b/members/casey-greene.html
@@ -767,6 +767,36 @@ <h3 id="2024">2024</h3>
       
       
 
+      <a href="https://doi.org/gtvsrt" class="citation-title">
+        Analysis of science journalism reveals gender and regional disparities in coverage
+      </a>
+
+      <div class="citation-authors" tabindex="0">
+        Natalie R. Davidson, Casey S. Greene
+
+      </div>
+
+      <div class="citation-details">
+        <span class="citation-publisher">eLife Sciences Publications, Ltd</span>
+         · 
+        <span class="citation-date">17 May 2024</span>
+         · 
+        <span class="citation-id">doi:10.7554/eLife.84855.2</span>
+      </div>
+
+      
+    </div>
+  </div>
+</div>
+
+<div class="citation-container">
+  <div class="citation">
+    
+
+    <div class="citation-text">
+      
+      
+
       <a href="https://doi.org/gtsgj7" class="citation-title">
         Missing cell types in single-cell references impact deconvolution of bulk data but are detectable
       </a>
@@ -1522,7 +1552,7 @@ <h3 id="2023">2023</h3>
       
       
 
-      <a href="https://doi.org/10.7554/elife.84855" class="citation-title">
+      <a href="https://doi.org/10.7554/elife.84855.1" class="citation-title">
         Analysis of science journalism reveals gender and regional disparities in coverage
       </a>
 
@@ -1536,7 +1566,7 @@ <h3 id="2023">2023</h3>
          · 
         <span class="citation-date">09 Feb 2023</span>
          · 
-        <span class="citation-id">doi:10.7554/eLife.84855</span>
+        <span class="citation-id">doi:10.7554/eLife.84855.1</span>
       </div>
 
       
@@ -1552,7 +1582,7 @@ <h3 id="2023">2023</h3>
       
       
 
-      <a href="https://doi.org/10.7554/elife.84855.1" class="citation-title">
+      <a href="https://doi.org/10.7554/elife.84855" class="citation-title">
         Analysis of science journalism reveals gender and regional disparities in coverage
       </a>
 
@@ -1566,7 +1596,7 @@ <h3 id="2023">2023</h3>
          · 
         <span class="citation-date">09 Feb 2023</span>
          · 
-        <span class="citation-id">doi:10.7554/eLife.84855.1</span>
+        <span class="citation-id">doi:10.7554/eLife.84855</span>
       </div>
 
       
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\ No newline at end of file
diff --git a/sitemap.xml b/sitemap.xml
index adbe653c..3f6473ad 100644
--- a/sitemap.xml
+++ b/sitemap.xml
@@ -2,202 +2,202 @@
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 <url>
 <loc>https://greenelab.com/members/ace.html</loc>
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 </url>
 <url>
 <loc>https://greenelab.com/members/adriana-ivich.html</loc>
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 </url>
 <url>
 <loc>https://greenelab.com/members/alex-lee.html</loc>
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 </url>
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 </url>
 <url>
 <loc>https://greenelab.com/members/ariel-hippen.html</loc>
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 </url>
 <url>
 <loc>https://greenelab.com/members/ben-heil.html</loc>
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 </url>
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 <url>
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 </url>
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 <url>
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 </url>
 <url>
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 </url>
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 </url>
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 <url>
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 <url>
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 <url>
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 <url>
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 </url>
 <url>
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 </url>
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 </url>
 <url>
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 </url>
 <url>
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 </url>
 <url>
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-<lastmod>2024-04-29T14:40:42+00:00</lastmod>
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 </url>
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