.travis.yml

# vim ft=yaml
# Multiple lines can be made a single "virtual line" because of the way that
# Travis munges each line before executing it to print out the exit status.
# It's okay for it to be on multiple physical lines, so long as you remember:
# - There can't be any leading "-"s - All newlines will be removed, so use
# ";"s
sudo: false  # To use travis container infrastructure
language: python
cache:
  directories:
    - $HOME/.cache/pip
addons:
  apt:
    packages:
      - libhdf5-serial-dev

env:
    global:
        - DEPENDS="cython numpy matplotlib h5py nibabel cvxpy"
        - VENV_ARGS="--python=python"
        - INSTALL_TYPE="setup"
        - EXTRA_WHEELS="https://5cf40426d9f06eb7461d-6fe47d9331aba7cd62fc36c7196769e4.ssl.cf2.rackcdn.com"
        - PRE_WHEELS="https://7933911d6844c6c53a7d-47bd50c35cd79bd838daf386af554a83.ssl.cf2.rackcdn.com"
        - EXTRA_PIP_FLAGS="--timeout=60 --find-links=$EXTRA_WHEELS"

python:
    - 3.5
    - 3.6
    - 3.8

matrix:
  include:
    - python: 3.7
      dist: xenial
      env:
        - DEPENDS="$DEPENDS scipy"
    # To test minimum dependencies for Python 3.5:
    - python: 3.5
      env:
        # Check these values against requirements.txt and dipy/info.py
        - DEPENDS="cython==0.29 numpy==1.12.0 scipy==1.0 nibabel==3.0.0 h5py==2.5.0 nose"
    # To test minimum dependencies for Python 3.7:
    - python: 3.7
      dist: xenial
      env:
        # Check these values against requirements.txt and dipy/info.py
        - DEPENDS="cython==0.29 numpy==1.15.0 scipy==1.1 nibabel==3.0.0 h5py==2.8.0"
    # Need to be uncomment when tensorflow and statsmodel available
    #- python: 3.8
    #  dist: xenial
    #  env:
    #    - DEPENDS="$DEPENDS scikit_learn pandas statsmodels==0.9.0 tables scipy==1.3.2 tensorflow"
    - python: 3.7
      dist: xenial
      env:
        - COVERAGE=1
        - DEPENDS="$DEPENDS scikit_learn pandas statsmodels==0.9.0 tables scipy==1.1 tensorflow"
    # To test vtk functionality
    - python: 3.7
      dist: xenial
      sudo: true   # This is set to true for apt-get
      services:
        - xvfb
      env:
        - COVERAGE=1
        - VTK=1
        - TEST_WITH_XVFB=true
        - MESA_GL_VERSION_OVERRIDE=3.3
        - LIBGL_ALWAYS_INDIRECT=y
        - DEPENDS="$DEPENDS scikit_learn vtk fury scipy"

    - python: 3.7
      dist: xenial
      env:
        - INSTALL_TYPE=sdist
        - DEPENDS="$DEPENDS scipy"

    - python: 3.7
      dist: xenial
      env:
        - INSTALL_TYPE=pip
        # Dependency checking should get all needed dependencies
        - DEPENDS=""
    - python: 3.7
      dist: xenial
      env:
        - INSTALL_TYPE=wheel
        - DEPENDS="$DEPENDS scipy"
    - python: 3.7
      dist: xenial
      env:
        - INSTALL_TYPE=requirements
        - DEPENDS=""
    - python: 3.7
      dist: xenial
      # Check against latest available pre-release version of all packages
      env:
        - USE_PRE=1
        - DEPENDS="$DEPENDS scipy"
  allow_failures:
    - python: 3.7
      dist: xenial
      env:
        - USE_PRE=1
        - DEPENDS="$DEPENDS scipy"

before_install:
    - PIPI="pip install $EXTRA_PIP_FLAGS"
    - if [ -n "$USE_PRE" ]; then
        PIPI="$PIPI --find-links=$PRE_WHEELS --pre";
      fi
    - pip install --upgrade virtualenv
    - virtualenv $VENV_ARGS venv
    - source venv/bin/activate
    - python --version # just to check
    # Needed for Python 3.5 wheel fetching
    - $PIPI --upgrade pip setuptools
    - $PIPI pytest
    - $PIPI numpy
    - if [ -n "$DEPENDS" ]; then $PIPI $DEPENDS; fi
    - if [ "${COVERAGE}" == "1" ]; then pip install coverage coveralls codecov; fi
    - if [ "${VTK}" == "1" ]; then
          sudo apt-get update;
          sudo apt-get install -y $VTK_VER;
          sudo apt-get install -y xvfb;
          sudo apt-get install -y python-tk;
          sudo apt-get install -y python-imaging;
          $PIPI xvfbwrapper;
      fi
install:
    - |
      if [ "$INSTALL_TYPE" == "setup" ]; then
        python setup.py install
      elif [ "$INSTALL_TYPE" == "pip" ]; then
        $PIPI .
      elif [ "$INSTALL_TYPE" == "sdist" ]; then
        python setup_egg.py egg_info  # check egg_info while we're here
        python setup_egg.py sdist
        $PIPI dist/*.tar.gz
      elif [ "$INSTALL_TYPE" == "wheel" ]; then
        pip install wheel
        python setup_egg.py bdist_wheel
        $PIPI dist/*.whl
      elif [ "$INSTALL_TYPE" == "requirements" ]; then
        $PIPI -r requirements.txt
        python setup.py install
      fi
# command to run tests, e.g. python setup.py test
script:
    # Change into an innocuous directory and find tests from installation
    - mkdir for_testing
    - cd for_testing
    # We need the setup.cfg for the pytest settings
    - cp ../setup.cfg .
    # No figure windows for mpl; quote to hide : from travis-ci yaml parsing
    - 'echo "backend : agg" > matplotlibrc'
    - if [ "${COVERAGE}" == "1" ]; then
      cp ../.coveragerc .;
      cp ../.codecov.yml .;
      COVER_CMD="coverage run -m ";
      fi
    - $COVER_CMD pytest -s --doctest-modules --verbose --durations=10 --pyargs dipy
after_success:
    - if [ "${COVERAGE}" == "1" ]; then coveralls; codecov; fi