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README.md

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nu-ngs02

Lectures

Day 1
  1. Part 1 | Introduction to genetic variants [Canvas]
  2. Part 2 | Crash tutorial for variant calling
Day 2
  1. Part 1 | Tutorial for GATK Variant calling
Day 3
  1. Part 1 | QC of genetic variants [Canvas]
  2. Part 2 | Tutorial for VCF-tools
  3. Part 2 | Tutorial for variant annotation
Day 4
  1. Part 1 | GWAS Study design [Canvas]
  2. Part 2 | Tutorial of Genome Wide Association Analysis
  3. Part 3 | Tutorial of Meta-GWAS
Day 5
  1. Part 1 | Phasing and imputation [Canvas]
  2. Part 2 | Tutorial for Impute2
  3. Part 3 | Tutorial for Beagle software
Day 6
  1. Part 1 | ChIP-Seq [Canvas]
  2. Part 2 | Tutorial for ChIP-Seq
  3. Part 3 | Long_reads [Canvas]
  4. Part 4 | Tutorial for handling long reads
  5. Part 6 | orthodb
  6. Part 6 | kProcessor