diff --git a/pangolin/__init__.py b/pangolin/__init__.py index 77c48d6..cd78ae9 100644 --- a/pangolin/__init__.py +++ b/pangolin/__init__.py @@ -1,5 +1,5 @@ _program = "pangolin" -__version__ = "3.1.18" +__version__ = "3.1.19" __all__ = ["pangolearn", diff --git a/pangolin/scripts/pangolearn.smk b/pangolin/scripts/pangolearn.smk index 2c416d7..788d20c 100644 --- a/pangolin/scripts/pangolearn.smk +++ b/pangolin/scripts/pangolearn.smk @@ -405,7 +405,7 @@ rule usher_to_report: note += f'; scorpio replaced lineage assignment {lineage}' lineage = scorpio_lineage elif not expanded_scorpio_lineage: - note += f'; scorpio replaced lineage assignment {row["lineage"]}' + note += f'; scorpio replaced lineage assignment {lineage}' lineage = UNASSIGNED_LINEAGE_REPORTED if histogram_note: