From bb22c6315017a7373824e4677cc719813e165cdf Mon Sep 17 00:00:00 2001 From: Erica Goldberger <52005289+egoldber@users.noreply.github.com> Date: Wed, 13 Apr 2022 14:52:59 -0400 Subject: [PATCH 1/2] Update and rename Grad Student.YAML to Full Name with Spaces.yaml updated file to be correct yaml format, changed strings to lists, added funding, birthday --- .../Templates/Full Name with Spaces.yaml | 46 +++++++++++++++++++ Lab Member YAMLs/Templates/Grad Student.YAML | 26 ----------- 2 files changed, 46 insertions(+), 26 deletions(-) create mode 100644 Lab Member YAMLs/Templates/Full Name with Spaces.yaml delete mode 100644 Lab Member YAMLs/Templates/Grad Student.YAML diff --git a/Lab Member YAMLs/Templates/Full Name with Spaces.yaml b/Lab Member YAMLs/Templates/Full Name with Spaces.yaml new file mode 100644 index 0000000..7a3759f --- /dev/null +++ b/Lab Member YAMLs/Templates/Full Name with Spaces.yaml @@ -0,0 +1,46 @@ +name: +birthday: MM.DD +position: (Job Title) (Graduate Student) (Postoctoral Research Scholar/Fellow) +affiliations: > + Weill Cornell Physiology, Biophysics, and Systems Biology PhD Program + Weill Cornell Biochemistry and Structural Biology PhD Program + Tri-Institutional PhD Program in Computational Biology and Medicine + Tri-Institutional PhD Program in Chemical Biology + Louis V. Gerstner, Jr. Graduate School of Biomedical Sciences + Berlin Institute of Health (BIH) Einstein Foundation - Stiftung Charité Group + Joint Mentorship with Name (URL to lab) +fellowships: > + (Any awards you have won) (i.e. MolSSI Investment Fellowship) +funding: > + (list of funding sources) +status: current + start-date: YYYY.MM.DD + end-date: YYYY.MM.DD +email: @choderalab.org +telephone: +twitter: handle (NO@) +linkedin: URL +ORCID: +google-scholar: URL +CV: (URL to PDF) +project(s): > + name +associations: > + perses + espaloma + pymbar + openmmtools + folding@home + yank + rocsalt +interests: > + (List ALL possible buzz words that are interests of yours; below are a few examples) + machine learning + free energy calculations + small molecule + SAMPL challenge + protein-protein interactions + automation + force fields + folding@home + bayesian modeling diff --git a/Lab Member YAMLs/Templates/Grad Student.YAML b/Lab Member YAMLs/Templates/Grad Student.YAML deleted file mode 100644 index c1f323f..0000000 --- a/Lab Member YAMLs/Templates/Grad Student.YAML +++ /dev/null @@ -1,26 +0,0 @@ -- name: - position: Graduate Student - affiliations: > - Weill Cornell Physiology, Biophysics, and Systems Biology PhD Program - Weill Cornell Biochemistry and Structural Biology PhD Program - Tri-Institutional PhD Program in Computational Biology and Medicine - Tri-Institutional PhD Program in Chemical Biology - Louis V. Gerstner, Jr. Graduate School of Biomedical Sciences - Berlin Institute of Health (BIH) Einstein Foundation - Stiftung Charité Group - Joint Mentorship with Dr. Richard Hite (URL to lab) - fellowships: - - MolSSI Investment Fellowship - status: current - start-date: year.month.day - email: - telephone: - twitter: - linkedin: - ORCID: - google-scholar: - CV: - project: name - associations: > - perses, openmmtools, folding@home, yank, rocsalt - interests: > - machine learning, free energy calculations, small molecule, SAMPL challenge, protein-protein interactions, automation, force fields, folding@home, bayesian modeling From a7636f25f9480f33348250bb42c733f22bd280e8 Mon Sep 17 00:00:00 2001 From: Erica Goldberger <52005289+egoldber@users.noreply.github.com> Date: Fri, 15 Apr 2022 10:01:57 -0400 Subject: [PATCH 2/2] Update and rename Full Name with Spaces.yaml to Full Name with Spaces.yaml.yaml --- .../Templates/Full Name with Spaces.yaml | 46 ----------- .../Templates/Full Name with Spaces.yaml.yaml | 79 +++++++++++++++++++ 2 files changed, 79 insertions(+), 46 deletions(-) delete mode 100644 Lab Member YAMLs/Templates/Full Name with Spaces.yaml create mode 100644 Lab Member YAMLs/Templates/Full Name with Spaces.yaml.yaml diff --git a/Lab Member YAMLs/Templates/Full Name with Spaces.yaml b/Lab Member YAMLs/Templates/Full Name with Spaces.yaml deleted file mode 100644 index 7a3759f..0000000 --- a/Lab Member YAMLs/Templates/Full Name with Spaces.yaml +++ /dev/null @@ -1,46 +0,0 @@ -name: -birthday: MM.DD -position: (Job Title) (Graduate Student) (Postoctoral Research Scholar/Fellow) -affiliations: > - Weill Cornell Physiology, Biophysics, and Systems Biology PhD Program - Weill Cornell Biochemistry and Structural Biology PhD Program - Tri-Institutional PhD Program in Computational Biology and Medicine - Tri-Institutional PhD Program in Chemical Biology - Louis V. Gerstner, Jr. Graduate School of Biomedical Sciences - Berlin Institute of Health (BIH) Einstein Foundation - Stiftung Charité Group - Joint Mentorship with Name (URL to lab) -fellowships: > - (Any awards you have won) (i.e. MolSSI Investment Fellowship) -funding: > - (list of funding sources) -status: current - start-date: YYYY.MM.DD - end-date: YYYY.MM.DD -email: @choderalab.org -telephone: -twitter: handle (NO@) -linkedin: URL -ORCID: -google-scholar: URL -CV: (URL to PDF) -project(s): > - name -associations: > - perses - espaloma - pymbar - openmmtools - folding@home - yank - rocsalt -interests: > - (List ALL possible buzz words that are interests of yours; below are a few examples) - machine learning - free energy calculations - small molecule - SAMPL challenge - protein-protein interactions - automation - force fields - folding@home - bayesian modeling diff --git a/Lab Member YAMLs/Templates/Full Name with Spaces.yaml.yaml b/Lab Member YAMLs/Templates/Full Name with Spaces.yaml.yaml new file mode 100644 index 0000000..0043c75 --- /dev/null +++ b/Lab Member YAMLs/Templates/Full Name with Spaces.yaml.yaml @@ -0,0 +1,79 @@ +# This is a template `.yaml` file that we use to keep our lab webpage up to date. +# Please fill out as much as possible and Comment out any fields if they don't apply to you/you do not wish to share (e.g. telephone, twitter, linkedin,etc.) +name: +birthday: Month - DD +position: +# Position can be either your MSKCC Job Title, Graduate Student, Postoctoral Research Scholar, or Postoctoral Research Fellow +affiliations: +# Please LIST any/all that apply to you. Comment out any affiliation/program that you do not belong to or add any that are not listed below +- Weill Cornell Biochemistry and Structural Biology PhD Program +- Tri-Institutional PhD Program in Computational Biology and Medicine +- Tri-Institutional PhD Program in Chemical Biology +- Louis V. Gerstner, Jr. Graduate School of Biomedical Sciences +- Berlin Institute of Health (BIH) Einstein Foundation - Stiftung Charité Group +- Joint Mentorship with Name (URL to lab homepage) +awards: +# Please LIST any and all awards you have received; below are some examples +- Ig Nobel Prize in Economics +- Lithuanian Horticultural Society Outstanding Mentorship Award +- NSF GRFP Graduate Fellowship +- American Philatelic Society Poster Prize +funding: +# Please LIST all of your sources for funding while working in the Chodera lab; below are some examples +- Memorial Sloan-Kettering Cancer Center, "Cycle for Survival" +- NIH GM121505 Quantitative dissection of the origin of kinase inhibitor selectivity +- Interline Therapeutics +- Open Force Field Consortium +- Silicon Therapeutics +- Vir Biosciences +- Bayer +status: current +# status can be either `current` or `alumni` +key dates: +# Please include all key dates. Comment out dates that do not apply to you. + - start-date: YYYY-MM-DD + - ace: YYYY-MM-DD + - committee-meetings: + - YYYY-MM-DD + - YYYY-MM-DD + - thesis-defense: YYYY-MM-DD + - end-date: YYYY-MM-DD +current-position: +# This should be your title of your next position if you know what your next venture is going to be +email: firstname.lastname@choderalab.org +telephone: +twitter: +# twitter handle (if applicable); do not include '@' (e.g.jchodera) +linkedin: URL +ORCID: +# ORCID is required. Please make sure you have one; if not ask Admin how to procure one +google-scholar: URL +CV: URL to PDF +projects: +# Brief descriptions of each project you are involved in (to appear on webpage). This should be a list; below are some examples +- End-to-end differentiable fitting of molecular mechanics force fields +- Alchemical free energy calculations that can learn +- Machine learning for drug discovery +- Large-scale molecular dynamics simulations of transmembrane proteins +contributions: +# Please LIST all of the github repositories you have contributed to/ are associated with; below are some examples +- perses +- espaloma +- pymbar +- openmmtools +- folding@home +- yank +- rocsalt +interests: +# Please LIST ALL possible keywords/buzz words that fall in your scientific interests; below are a few examples +- machine learning +- free energy calculations +- blind predictive modeling challenges +- automation +- cats +- protein-protein interactions +- automation +- force fields +- folding@home +- bayesian modeling +- magnets