config.yaml

##### Analysis Mode Parameters #####

discard_low_fire: 0
use_downsampling: False
usespikes: False

#####          Neural data        #####
##### starts from under './data/' #####

ethovision_files: 'mouse1 - base and opto/Raw data-Square50_Opto1_PV5_6-Trial     1.xlsx'
inscopix_files:
  spk: 'mouse1 - base and opto/Square50_B1O1B2O2_PV5_6_Opto1_deconv.xlsx'
  trc: 'mouse1 - base and opto/Square50_B1O1B2O2_PV5_6_Opto1.xlsx'
mouse_num: 1
experiment_name: "PV_1_Opto"
cell_index: [0, 3, 5, 6, 10, 13, 14, 17, 19, 20, 21, 23, 25, 38, 40, 43, 44, 47, 48, 54, 63, 64, 66, 71, 72] #None for all

##### CEBRA paramters #####

dims: [8, 16]
max_iterations: 1000
save_models: False
model_architecture: 'offset10-model'
batch_size: 512
learning_rate: 0.0003
temperature_mode: 'constant'
temperature: 1.3
distance: 'cosine'
conditional: 'time_delta'
time_offsets: 10
hybrid: False

##### Persistant Homology parameters #####

maxdim: 1
seed: 111
importance_threshold: 0.3