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I have tried using MedSAMSlicer 0.11 and 0.13 with Slicer 5.6.1and Slicer 5.6.2 on my Windows 10 system (without GPU), but I encountered multiple issues:
Error when using MedSAMSlicer-0.11:
Upon starting the module, I receive the following error:
This prevents the MedSAMLite module from being instantiated as well. 3. Freezing Issue When Using the Extension:
After ignoring the errors in the Python console and attempting to use the extension, I attached an ROI and clicked "send image" or "single segmentation".
A progress bar starts to show, indicating "embedding". When the first progress bar reaches 100%, a second one appears, but this one doesn't progress.
Eventually, Slicer becomes unresponsive and freezes.
My system configuration:
Windows 10
No GPU
Questions/Clarifications:
Is this issue caused by my hardware setup (lack of GPU), or is it related to software incompatibilities (Slicer version, MedSAMSlicer version, dependencies)?
How can I resolve the import error related to vtkMRMLMarkupsROINode? Is this class no longer available in Slicer 5.6.1?
What steps can I take to prevent the software from freezing during the segmentation process?
Steps to Reproduce:
Install Slicer 5.6.1 or 5.6.2(no GPU).
Install MedSAMSlicer 0.11 or 0.13.
Attempt to use the "send image" or "single segmentation" options.
Observe the progress bar issue and software freeze.
Additional Information:
I have tried different versions of Slicer (5.6.1 + MedSAMSlicer-0.11, 5.6.1 + MedSAMSlicer-0.13, 5.6.2 + MedSAMSlicer-0.13) but encounter the same errors.
The software freezes after completing the first progress bar in the embedding process.
The text was updated successfully, but these errors were encountered:
System Information:
Description:
I have tried using MedSAMSlicer 0.11 and 0.13 with Slicer 5.6.1and Slicer 5.6.2 on my Windows 10 system (without GPU), but I encountered multiple issues:
This prevents the MedSAMLite module from being instantiated.
2. Error when using MedSAMSlicer-0.13:
A similar error occurs with version 0.13:
This prevents the MedSAMLite module from being instantiated as well.
3. Freezing Issue When Using the Extension:
My system configuration:
Questions/Clarifications:
Additional Information:
I have tried different versions of Slicer (5.6.1 + MedSAMSlicer-0.11, 5.6.1 + MedSAMSlicer-0.13, 5.6.2 + MedSAMSlicer-0.13) but encounter the same errors.
The software freezes after completing the first progress bar in the embedding process.
The text was updated successfully, but these errors were encountered: