pyproject.toml

[tool.poetry]
name = "biosimulators-tellurium"
version = "0.1.44"
description = "BioSimulators-compliant command-line interface to the Tellurium/roadrunner simulator <https://tellurium.readthedocs.io/>."
authors = ["Center for Reproducible Biomedical Modeling <info@biosimulators.org>"]
license = "MIT"
readme = "README.md"
homepage = "https://tellurium.readthedocs.io/en/latest/"
repository = "https://github.com/biosimulators/Biosimulators_tellurium"
classifiers=[
        'Development Status :: 3 - Alpha',
        'Intended Audience :: Science/Research',
        'License :: OSI Approved :: MIT License',
        'Topic :: Scientific/Engineering :: Bio-Informatics',
    ]
keywords=['systems', 'biology', 'modeling', 'simulation']
exclude = ['tests', 'tests.*']

[tool.poetry.dependencies]
python = "^3.10"
tellurium = "^2.2.10"
biosimulators_utils = {version = "^0.2.3", extras = ["logging", "sbml"]}
kisao = "^2.34"
libroadrunner = "^2.7.0"
lxml = "^4.9.2"
numpy = "^1.24.4"
pandas = "^2.0.2"
docker = "^7.1.0"
pyPDF2 = "^3.0.1"

[tool.poetry.group.dev.dependencies]
flake8 = "^7.1.1"
flakey = "^1.0"
pytest = "^8.3.3"
pytest-cov = "^5.0.0"

[tool.poetry.group.docs.dependencies]
pydata-sphinx-theme = "*"
sphinx = ">=1.8"

[tool.poetry.scripts]
biosimulators-tellurium = 'biosimulators_tellurium.__main__:main'
fix-tellurium-generated-combine-archive = 'biosimulators_copasi.__main__:fix_copasi_generated_combine_archive'

[build-system]
requires = ["poetry-core"]
build-backend = "poetry.core.masonry.api"