- Fixed major bug causing biod/sambamba#393
- Fixed dub and make files
- Dub test still fails because of GC
- Debian package on the way (thanks https://github.com/atille https://github.com/biod/BioD/issues/50)
- Compiles and tests pass on Debian with dub and ldc 1.17.0
- Restored make so we can compile without dub
- Fasta and fasta indexing (.fai) support added (thanks Emilio Palumbo https://github.com/emi80)
- Mate pair comparison and HI tag support added for BAM (thanks https://github.com/emi80)
- Added Picard-style comparison for BAM (thanks https://github.com/TimurIs)
- Added fast whitespace line splitter/tokenizer, a Phobos-style version and a faster C-style version (thanks https://github.com/pjotrp)
- Added multi-allelic frequencies (MAF) support (thanks https://github.com/pjotrp)
- Name spaces and directories reorganised (thanks George Gethinji https://github.com/george-githinji)
- Pulled in D's undead repo (dropped dependency) and minimalised it to actual used files (@pjotrp)
- Fix bunch of deprecation warnings
- Fixes sort removing tags from @RG header biod/sambamba#356
- Fixes https://github.com/biod/BioD/issues/37
64-bit compilation should be fine on ldc 1.10
- Added FastQ parser (thanks George Githinji @george-githinji)
- Added rewritten Bamreader f4a6c1c55c8903e948b793adbb150704d1e267b2 (thanks Pjotr Prins @pjotrp)
- Improved big-endian support and other bug fixes (thanks Artem Tarasov @lomereiter)
- Include SAM/BAM AH tag (thanks Indraniel Das @indraniel)
- D undeaD compilation fixes (thanks John Colvin @John-Colvin)
- Meson build definition added (thanks Matthias Klumpp @ximion)
- Update outputstream.d (thanks Brett T. Hannigan @godotgildor)
- Moved Cigar into its own module 7994406592f277bc6950739aaf75c5f948cb7928
- Added 'asserte' method which throws an exception on assert (failure)
- Bug fixes:
- #31 Bug in bio/core/utils/outbuffer.d: _heap.length is not correctly set affects reading long SAM records
- biod/sambamba#210 correct pseudo-bin calculation (thanks @jfarek)
- JSON header output fixes #331