We read every piece of feedback, and take your input very seriously.
To see all available qualifiers, see our documentation.
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Seems that we need a fortran requirement for msnbase ... or is it something different like gcc?
library(MSnbase) Loading required package: BiocGenerics Loading required package: parallel Attaching package: ‘BiocGenerics’ The following objects are masked from ‘package:parallel’: clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, clusterExport, clusterMap, parApply, parCapply, parLapply, parLapplyLB, parRapply, parSapply, parSapplyLB The following objects are masked from ‘package:stats’: IQR, mad, sd, var, xtabs The following objects are masked from ‘package:base’: anyDuplicated, append, as.data.frame, basename, cbind, colMeans, colnames, colSums, dirname, do.call, duplicated, eval, evalq, Filter, Find, get, grep, grepl, intersect, is.unsorted, lapply, lengths, Map, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, Position, rank, rbind, Reduce, rowMeans, rownames, rowSums, sapply, setdiff, sort, table, tapply, union, unique, unsplit, which, which.max, which.min Loading required package: Biobase Welcome to Bioconductor Vignettes contain introductory material; view with 'browseVignettes()'. To cite Bioconductor, see 'citation("Biobase")', and for packages 'citation("pkgname")'. Loading required package: mzR Loading required package: Rcpp Loading required package: BiocParallel Error: package or namespace load failed for ‘MSnbase’ in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object '/gpfs1/data/galaxy_server/galaxy/database/dependencies/_conda/envs/mulled-v1-c0cde3dd10ed36abe750c63bc3a68bb64acd685d21223d5fdf53db852d7ccc23/lib/R/library/MSnbase/libs/MSnbase.so': libgfortran.so.4: cannot open shared object file: No such file or directory
Happens in a environment created with:
conda create -y --quiet --override-channels --channel iuc --channel conda-forge --channel bioconda --channel defaults --name mulled-v1-c0cde3dd10ed36abe750c63bc3a68bb64acd685d21223d5fdf53db852d7ccc23 r-snow=0.4_2 bioconductor-xcms=3.0.0 bioconductor-camera=1.34.0 bioconductor-multtest=2.28.0 r-batch=1.1_4 graphicsmagick=1.3.23
ping @chufz
The text was updated successfully, but these errors were encountered:
Hi @bernt-matthias , @cbroeckl recently discovered issues installing xcms via conda, reported in sneumann/xcms#775. Checking https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-xcms I see that the latest xcms would be 4.0.0 from BioC-3.18. Any way to help updating the bioconda recipies ? Yours, Steffen
Sorry, something went wrong.
No branches or pull requests
Seems that we need a fortran requirement for msnbase ... or is it something different like gcc?
Happens in a environment created with:
ping @chufz
The text was updated successfully, but these errors were encountered: