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_config.yml
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# Welcome to Jekyll!
#
# This config file is meant for settings that affect your whole blog, values
# which you are expected to set up once and rarely edit after that. If you find
# yourself editing this file very often, consider using Jekyll's data files
# feature for the data you need to update frequently.
#
# For technical reasons, this file is *NOT* reloaded automatically when you use
# 'bundle exec jekyll serve'. If you change this file, please restart the server process.
# Site settings
# These are used to personalize your new site. If you look in the HTML files,
# you will see them accessed via {{ site.title }}, {{ site.email }}, and so on.
# You can create any custom variable you would like, and they will be accessible
# in the templates via {{ site.myvariable }}.
# -----------------------------------------------------------------------------
# User configuration
# -----------------------------------------------------------------------------
title: BGGN 213
# The unique resource location of your page.
# Set to `https://<username>.github.io` when hosting on GitHub Pages
url: https://bioboot.github.io
# Set to '' when hosting a blog on GitHub Pages, ie on `//<username>.github.io`
# Set to '/<reponame>' when using the `gh-pages` branch of a repository
baseurl: /bggn213_F23
# A very short description of your page
tagline: An introductory hands-on course in Bioinformatics for Biology majors at UCSD.
# A short description of the page, used in the sidebar and as fallback for the meta description tag.
# Markdown enabled, but don't use more than one paragraph (enforced by `>`)
description: >
A hands-on introduction to the computer-based analysis of genomic and biomolecular data from the [Division of Biological Sciences, UCSD](https://biology.ucsd.edu/).
# This should be the same author as first entry in `_data/authors.yml`
author:
name: Barry Grant
email: [email protected]
# Fallback image and color (note you can have a page specific sidebar image and color from yml)
image: /bggn213_F23/assets/img/dna_BCK.jpg
##-image: '{{ baseurl }}/assets/img/dna.jpg'
color: '#4f86aa'
# The font used for headings. Expects a string that is a valid CSS font-family value.
font_heading: "'Roboto Slab', Helvetica, Arial, sans-serif"
# The text font. Expects a string that is a valid CSS font-family value.
font: "'Noto Sans', Helvetica, Arial, sans-serif"
# The string encoding what fonts to fetch from Google Fonts.
# See: https://qwtel.com/hydejack/docs/configuration/
google_fonts: Roboto+Slab:700|Noto+Sans:400,400i,700,700i
# If you do not use a Google Fonts, uncomment the line below
# no_google_fonts: true
# Set your Google Analytics id to receive `pageview` events.
# To remove Google Anaylics from your page, remove the line below.
##-google_analytics: <UA-XXXXXXXX-X>
# Setting a disqus shortname will enable the comment section on pages with `comments: true` in the front matter
disqus_shortname: bggn213
# This text will appear in the footer of every page. Markdown enabled.
copyright: '© 2023 [Barry J. Grant](). All rights reserved.'
# Format of the permalinks
permalink: pretty
# Pagination configuration (used by the `blog` layout)
##--## paginate: 5
##--## paginate_path: '/page-:num/'
# If you are upgrading form a v5 verison of Hydejack, uncomment the two lines below,
# so that the location of the feed XML stays the same.
# feed:
# path: atom.xml
# Set to true when building with the `--lsi` option
# See: https://jekyllrb.com/docs/variables/#site-variables
# use_lsi: true
# Set to `true` if you don't want to show an icon after each link that opens to an external site
# no_mark_external: true
# Uncomment this line if third party plugins fail to work with dynimically loaded pages
# disable_push_state: true
# Uncomment this line if want to disable the touch drawer on mobile
# disable_drawer: true
# -----------------------------------------------------------------------------
# Collections
# -----------------------------------------------------------------------------
collections:
featured_categories:
permalink: /category/:name/
output: true
featured_tags:
permalink: /tag/:name/
output: true
projects:
permalink: /projects/:path/
output: true
# -----------------------------------------------------------------------------
# Advanced configuration
# -----------------------------------------------------------------------------
plugins:
- jekyll-default-layout
- jekyll-feed
- jekyll-optional-front-matter
- jekyll-paginate
- jekyll-redirect-from
- jekyll-relative-links
- jekyll-sitemap
exclude:
- README.md
- node_modules
- package.json
- package-lock.json
- Gemfile
- Gemfile.lock
kramdown:
footnote_backlink: '↩︎'
math_engine: mathjax
math_engine_opts:
preview: true
preview_as_code: true
compress_html:
comments: ["<!-- ", " -->"]
clippings: all
endings: all
ignore:
envs: [development]
sass:
style: compressed