Abundance Barplot

Quick Start

Open rstudio in binder and press knit.

Example Output

Summary

You can explore differences amongst taxa in metabarcoding data in several different ways. This file will help you determine differences amongst categories in the most abundant taxa in your dataset. Outputs include:

A group of barplots of the log abundance of the top 20 taxa in the chosen taxonomic category
An ANOVA with post-hoc Tukey test

Inputs:

otu table
taxa table
mapping file

OR

phyloseq file

Authors

Alia Al-Haj
- Github repo: https://github.com/aliaalhaj
- ORCID: https://orcid.org/0000-0003-1899-5117

Links

Zenodo Binder, doi: LINK_TO_BINDER

Github Binder:

Github Repository: https://github.com/speeding-up-science-workshops/<REPO_NAME>