.travis.yml

language: python
python:
  # see travis.ci info on http://conda.pydata.org/docs/travis.html
  # We don't actually use the Travis Python, but this keeps it organized.
  - "2.7"
#  - "3.3"
  - "3.4"
  - "3.5"


# command to install dependencies
##################################

install:

  - "pip install -r requirements.txt"

  - sudo apt-get update

  # We do this conditionally because it saves us some downloading if the version is the same.
  - if [[ "$TRAVIS_PYTHON_VERSION" == "2.7" ]]; then
      wget https://repo.continuum.io/miniconda/Miniconda-latest-Linux-x86_64.sh -O miniconda.sh;
    else
      wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh;
    fi

  - bash miniconda.sh -b -p $HOME/miniconda
  - export PATH="$HOME/miniconda/bin:$PATH"

  - hash -r
  - conda config --set always_yes yes --set changeps1 no
  - conda update -q conda

  # Useful for debugging any issues with conda
  - conda info -a

  # Replace dep1 dep2 ... with your dependencies
  - conda create -q -n test-environment python=$TRAVIS_PYTHON_VERSION  biopython==1.66 cycler==0.9.0 Cython==0.23.4 decorator==4.0.6 numpy==1.10.2 matplotlib
  - source activate test-environment
  - python setup.py install


# command to run tests
######################

# script: nosetests -v --with-cov --cov-report html --cov-config .coveragerc  --cov crispr tests/
# script:  nosetests -v --with-coverage --cover-erase --cover-html
script:  nosetests
after_success:
    - coverallsscr