diff --git a/docs/articles/bioRad_files/header-attrs-2.1/header-attrs.js b/docs/articles/bioRad_files/header-attrs-2.1/header-attrs.js deleted file mode 100644 index dd57d92e0..000000000 --- a/docs/articles/bioRad_files/header-attrs-2.1/header-attrs.js +++ /dev/null @@ -1,12 +0,0 @@ -// Pandoc 2.9 adds attributes on both header and div. We remove the former (to -// be compatible with the behavior of Pandoc < 2.8). -document.addEventListener('DOMContentLoaded', function(e) { - var hs = document.querySelectorAll("div.section[class*='level'] > :first-child"); - var i, h, a; - for (i = 0; i < hs.length; i++) { - h = hs[i]; - if (!/^h[1-6]$/i.test(h.tagName)) continue; // it should be a header h1-h6 - a = h.attributes; - while (a.length > 0) h.removeAttribute(a[0].name); - } -}); diff --git a/docs/articles/ecog12354-fig-0002-m.jpg b/docs/articles/ecog12354-fig-0002-m.jpg deleted file mode 100644 index 3f3cb6c70..000000000 Binary files a/docs/articles/ecog12354-fig-0002-m.jpg and /dev/null differ diff --git a/docs/articles/rad_aero_19_files/header-attrs-2.1/header-attrs.js b/docs/articles/rad_aero_19_files/header-attrs-2.1/header-attrs.js deleted file mode 100644 index dd57d92e0..000000000 --- a/docs/articles/rad_aero_19_files/header-attrs-2.1/header-attrs.js +++ /dev/null @@ -1,12 +0,0 @@ -// Pandoc 2.9 adds attributes on both header and div. We remove the former (to -// be compatible with the behavior of Pandoc < 2.8). -document.addEventListener('DOMContentLoaded', function(e) { - var hs = document.querySelectorAll("div.section[class*='level'] > :first-child"); - var i, h, a; - for (i = 0; i < hs.length; i++) { - h = hs[i]; - if (!/^h[1-6]$/i.test(h.tagName)) continue; // it should be a header h1-h6 - a = h.attributes; - while (a.length > 0) h.removeAttribute(a[0].name); - } -}); diff --git a/docs/articles/range_correction_files/header-attrs-2.1/header-attrs.js b/docs/articles/range_correction_files/header-attrs-2.1/header-attrs.js deleted file mode 100644 index dd57d92e0..000000000 --- a/docs/articles/range_correction_files/header-attrs-2.1/header-attrs.js +++ /dev/null @@ -1,12 +0,0 @@ -// Pandoc 2.9 adds attributes on both header and div. We remove the former (to -// be compatible with the behavior of Pandoc < 2.8). -document.addEventListener('DOMContentLoaded', function(e) { - var hs = document.querySelectorAll("div.section[class*='level'] > :first-child"); - var i, h, a; - for (i = 0; i < hs.length; i++) { - h = hs[i]; - if (!/^h[1-6]$/i.test(h.tagName)) continue; // it should be a header h1-h6 - a = h.attributes; - while (a.length > 0) h.removeAttribute(a[0].name); - } -}); diff --git a/docs/reference/apply_mistnet-1.png b/docs/reference/apply_mistnet-1.png deleted file mode 100644 index fad5de8e9..000000000 Binary files a/docs/reference/apply_mistnet-1.png and /dev/null differ diff --git a/docs/reference/apply_mistnet-2.png b/docs/reference/apply_mistnet-2.png deleted file mode 100644 index 3ad066cde..000000000 Binary files a/docs/reference/apply_mistnet-2.png and /dev/null differ diff --git a/docs/reference/apply_mistnet-3.png b/docs/reference/apply_mistnet-3.png deleted file mode 100644 index 8f515a2d9..000000000 Binary files a/docs/reference/apply_mistnet-3.png and /dev/null differ diff --git a/docs/reference/apply_mistnet-4.png b/docs/reference/apply_mistnet-4.png deleted file mode 100644 index 83aaec314..000000000 Binary files a/docs/reference/apply_mistnet-4.png and /dev/null differ diff --git a/docs/reference/as.data.frame.vpts.html b/docs/reference/as.data.frame.vpts.html deleted file mode 100644 index f81fc37c3..000000000 --- a/docs/reference/as.data.frame.vpts.html +++ /dev/null @@ -1,340 +0,0 @@ - - - - - - - - -Convert a time series of vertical profiles (<code>vpts</code>) to a data frame — as.data.frame.vpts • bioRad - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
-
- - - - -
- -
-
-
-

Convert a time series of vertical profiles (vpts) to a data frame

- Source: R/vpts.R - -
- -
-

Converts vertical profile time series (objects of class vpts) to a -data Frame, and optionally adds information on sunrise/sunset, day/night -and derived quantities like migration traffic rates.

-
- - 
# S3 method for vpts
-as.data.frame(
-  x,
-  row.names = NULL,
-  optional = FALSE,
-  quantities = names(x$data),
-  suntime = TRUE,
-  geo = TRUE,
-  elev = -0.268,
-  lat = NULL,
-  lon = NULL,
-  ...
-)
- -

Arguments

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
x

An object of class vpts.

row.names

NULL or a character vector giving the row names for -the data frame. Missing values are not allowed.

optional

If FALSE then the names of the variables in the data -frame are checked to ensure that they are syntactically valid variable names -and are not duplicated.

quantities

An optional character vector with the names of the -quantities to include as columns in the data frame.

suntime

Logical, when TRUE, adds sunrise/sunset and day/night -information to each row.

geo

Logical, when TRUE, adds latitude, longitude and antenna height -of the radar to each row.

elev

Sun elevation in degrees, see sunrise/sunset.

lat

Radar latitude in decimal degrees. When set, overrides the -latitude stored in x in sunrise/sunset calculations.

lon

Radar longitude in decimal degrees. When set, overrides the -longitude stored in x in sunrise/sunset calculations.

...

Additional arguments to be passed to or from methods.

- -

Value

- -

An object of class data.frame.

-

Details

- -

Note that only the 'dens' quantity is thresholded for radial velocity -standard deviation by sd_vvp_threshold. Note that this is different from the -default plot.vp, plot.vpts and get_quantity.vp -functions, where quantities "eta", "dbz", "ff", "u", "v", "w", "dd" are all -thresholded by sd_vvp_threshold.

- -

Examples

- 
# load an example vertical profile time series object
-data(example_vpts)
-example_vpts
#>                    Irregular time series of vertical profiles (class vpts)
-#> 
-#>            radar:  KBGM 
-#>       # profiles:  1934 
-#> time range (UTC):  2016-09-01 00:02:00 - 2016-09-10 11:56:00 
-#>    time step (s):  min: 180     max:  16320 

-# convert the object to a data.frame
-df <- as.data.frame(example_vpts)
-
-# do not compute sunrise/sunset information
-df <- as.data.frame(example_vpts, suntime = FALSE)
-
-# override the latitude/longitude information stored in the object
-# when calculating sunrise / sunset
-df <- as.data.frame(example_vpts, suntime = TRUE, lat = 50, lon = 4)
-
-# print first then rows of data.frame to console:
-df[1:10, ]
#>    radar            datetime height    u     v     w   ff    dd sd_vvp   gap
-#> 1   KBGM 2016-09-01 00:02:00      0  NaN   NaN   NaN  NaN   NaN    NaN  TRUE
-#> 2   KBGM 2016-09-01 00:02:00    200  NaN   NaN   NaN  NaN   NaN    NaN  TRUE
-#> 3   KBGM 2016-09-01 00:02:00    400  NaN   NaN   NaN  NaN   NaN   2.81  TRUE
-#> 4   KBGM 2016-09-01 00:02:00    600 4.14  3.84 12.17 5.65  47.2   2.80 FALSE
-#> 5   KBGM 2016-09-01 00:02:00    800 5.06  0.24 15.17 5.07  87.2   2.42 FALSE
-#> 6   KBGM 2016-09-01 00:02:00   1000 4.74 -2.69 18.48 5.45 119.6   2.38 FALSE
-#> 7   KBGM 2016-09-01 00:02:00   1200 4.41 -4.09 -2.49 6.02 132.9   2.29 FALSE
-#> 8   KBGM 2016-09-01 00:02:00   1400 4.78 -3.55 -2.96 5.96 126.6   2.34 FALSE
-#> 9   KBGM 2016-09-01 00:02:00   1600 3.75 -3.03 -7.32 4.82 128.9   2.62 FALSE
-#> 10  KBGM 2016-09-01 00:02:00   1800 4.14 -2.03 -5.69 4.61 116.1   3.06 FALSE
-#>       dbz  eta        dens   DBZH    n n_dbz n_all n_dbz_all lat lon
-#> 1     NaN  NaN         NaN    NaN    0     0     0         0  50   4
-#> 2     NaN  NaN         NaN    NaN    0     0     0         0  50   4
-#> 3    1.54 30.8 2.800000000   3.77  326   356 22485     28416  50   4
-#> 4    3.36 46.9 4.263636364   0.50 9006 13442 65947    104455  50   4
-#> 5   -7.89  3.5 0.318181818 -10.33 2313 11145 21321     63542  50   4
-#> 6  -16.17  0.5 0.045454545 -15.58  652  8851 11789     38006  50   4
-#> 7  -19.61  0.2 0.018181818 -16.93  990  8026  8434     25583  50   4
-#> 8  -22.72  0.1 0.009090909 -19.60  407  9945  2718     20376  50   4
-#> 9  -24.65  0.1 0.009090909 -24.28  247 11786   442     14716  50   4
-#> 10 -25.29  0.1 0.009090909 -25.38  154 10878   163     11482  50   4
-#>    height_antenna   day             sunrise              sunset
-#> 1             519 FALSE 2016-09-01 05:03:05 2016-09-01 18:23:38
-#> 2             519 FALSE 2016-09-01 05:03:05 2016-09-01 18:23:38
-#> 3             519 FALSE 2016-09-01 05:03:05 2016-09-01 18:23:38
-#> 4             519 FALSE 2016-09-01 05:03:05 2016-09-01 18:23:38
-#> 5             519 FALSE 2016-09-01 05:03:05 2016-09-01 18:23:38
-#> 6             519 FALSE 2016-09-01 05:03:05 2016-09-01 18:23:38
-#> 7             519 FALSE 2016-09-01 05:03:05 2016-09-01 18:23:38
-#> 8             519 FALSE 2016-09-01 05:03:05 2016-09-01 18:23:38
-#> 9             519 FALSE 2016-09-01 05:03:05 2016-09-01 18:23:38
-#> 10            519 FALSE 2016-09-01 05:03:05 2016-09-01 18:23:38
-
- -
- - - -
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-
- - - - -
- -
-
-
-

Print method for class param

- Source: R/param.R - -
- -
-

Print method for class param

-
- - 
# S3 method for param
-print(x, digits = max(3L, getOption("digits") - 3L), ...)
- -

Arguments

- - - - - - -
x

An object of class param, a polar scan parameter.

- - -
- -
- - - -
- - - - - - - - - - - diff --git a/docs/reference/print.ppi.html b/docs/reference/print.ppi.html deleted file mode 100644 index acdfcf0cb..000000000 --- a/docs/reference/print.ppi.html +++ /dev/null @@ -1,218 +0,0 @@ - - - - - - - - -Print method for class <code>ppi</code> — print.ppi • bioRad - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
-
- - - - -
- -
-
-
-

Print method for class ppi

- Source: R/ppi.R - -
- -
-

Print method for class ppi

-
- - 
# S3 method for ppi
-print(x, digits = max(3L, getOption("digits") - 3L), ...)
- -

Arguments

- - - - - - -
x

An object of class ppi.

- - -
- -
- - - -
- - - - - - - - - - - diff --git a/docs/reference/print.pvol.html b/docs/reference/print.pvol.html deleted file mode 100644 index 4b1d1153c..000000000 --- a/docs/reference/print.pvol.html +++ /dev/null @@ -1,218 +0,0 @@ - - - - - - - - -Print method for class <code>pvol</code> — print.pvol • bioRad - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
-
- - - - -
- -
-
-
-

Print method for class pvol

- Source: R/pvol.R - -
- -
-

Print method for class pvol

-
- - 
# S3 method for pvol
-print(x, digits = max(3L, getOption("digits") - 3L), ...)
- -

Arguments

- - - - - - -
x

An object of class pvol, a polar volume

- - -
- -
- - - -
- - - - - - - - - - - diff --git a/docs/reference/print.scan.html b/docs/reference/print.scan.html deleted file mode 100644 index ac2e29c5f..000000000 --- a/docs/reference/print.scan.html +++ /dev/null @@ -1,218 +0,0 @@ - - - - - - - - -Print method for class <code>scan</code> — print.scan • bioRad - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
-
- - - - -
- -
-
-
-

Print method for class scan

- Source: R/scan.R - -
- -
-

Print method for class scan

-
- - 
# S3 method for scan
-print(x, digits = max(3L, getOption("digits") - 3L), ...)
- -

Arguments

- - - - - - -
x

An object of class scan, a polar scan.

- - -
- -
- - - -
- - - - - - - - - - - diff --git a/docs/reference/print.vp.html b/docs/reference/print.vp.html deleted file mode 100644 index f59cece6d..000000000 --- a/docs/reference/print.vp.html +++ /dev/null @@ -1,219 +0,0 @@ - - - - - - - - -Print method for class <code>vp</code> — print.vp • bioRad - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
-
- - - - -
- -
-
-
-

Print method for class vp

- Source: R/vp.R - -
- -
-

Print method for class vp

-
- - 
# S3 method for vp
-print(x, digits = max(3L, getOption("digits") - 3L), ...)
- -

Arguments

- - - - - - -
x

An object of class vp, like the result of a call to -read_vpfiles.

- - -
- -
- - - -
- - - - - - - - - - - diff --git a/docs/reference/print.vpts.html b/docs/reference/print.vpts.html deleted file mode 100644 index 8383f82e2..000000000 --- a/docs/reference/print.vpts.html +++ /dev/null @@ -1,219 +0,0 @@ - - - - - - - - -Print method for class <code>vpts</code> — print.vpts • bioRad - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
-
- - - - -
- -
-
-
-

Print method for class vpts

- Source: R/vpts.R - -
- -
-

Print method for class vpts

-
- - 
# S3 method for vpts
-print(x, digits = max(3L, getOption("digits") - 3L), ...)
- -

Arguments

- - - - - - -
x

An object of class vpts, usually a result of a call -to bind_into_vpts.

- - -
- -
- - - -
- - - - - - - - - - -