NAMESPACE

# Generated by roxygen2: do not edit by hand

export(annotateNetwork)
export(filterPatterns)
export(find)
export(find.patterns.class)
export(findFormula)
export(findGNPSComponents)
export(findMz)
export(findPatternsExplainingComponents)
export(getExtendedSpec)
export(getInfo)
export(lossesTable)
export(ms2Lib)
export(penalizedLossesDefault)
export(plotPatterns)
export(recognisedFormat)
export(select)
exportClasses(ms2Lib)
exportMethods("[")
exportMethods(calculateCoverage)
exportMethods(discretizeMassLosses)
exportMethods(length)
exportMethods(mineClosedSubgraphs)
exportMethods(plot)
exportMethods(plotOccurences)
exportMethods(setComponents)
exportMethods(setIds)
exportMethods(show)
exportMethods(vrange)
import(Rcpp)
importFrom(MSnbase,intensity)
importFrom(MSnbase,mz)
importFrom(MSnbase,precursorMz)
importFrom(MSnbase,readMgfData)
importFrom(MSnbase,removePeaks)
importFrom(Matrix,Matrix)
importFrom(grDevices,rainbow)
importFrom(graphics,layout)
importFrom(graphics,lines)
importFrom(graphics,mtext)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,points)
importFrom(graphics,text)
importFrom(igraph,"%--%")
importFrom(igraph,"edge_attr<-")
importFrom(igraph,E)
importFrom(igraph,V)
importFrom(igraph,add_edges)
importFrom(igraph,adjacent_vertices)
importFrom(igraph,as_data_frame)
importFrom(igraph,components)
importFrom(igraph,delete_edges)
importFrom(igraph,delete_vertices)
importFrom(igraph,ecount)
importFrom(igraph,edge_attr)
importFrom(igraph,get.edge.ids)
importFrom(igraph,graph.empty)
importFrom(igraph,graph_from_data_frame)
importFrom(igraph,head_of)
importFrom(igraph,incident)
importFrom(igraph,incident_edges)
importFrom(igraph,induced_subgraph)
importFrom(igraph,largest.cliques)
importFrom(igraph,layout_with_sugiyama)
importFrom(igraph,make_empty_graph)
importFrom(igraph,plot.igraph)
importFrom(igraph,set_edge_attr)
importFrom(igraph,set_vertex_attr)
importFrom(igraph,tail_of)
importFrom(igraph,tkplot)
importFrom(igraph,vcount)
importFrom(igraph,vertex_attr)
importFrom(igraph,write_graph)
importFrom(stats,density)
importFrom(stats,median)
importFrom(stats,na.omit)
importFrom(stats,pnorm)
importFrom(stringr,fixed)
importFrom(stringr,str_detect)
importFrom(stringr,str_replace)
importFrom(stringr,str_split)
importFrom(stringr,str_sub)
importFrom(utils,setTxtProgressBar)
importFrom(utils,tail)
importFrom(utils,txtProgressBar)
importMethodsFrom(MSnbase,clean)
importMethodsFrom(MSnbase,fData)
importMethodsFrom(MSnbase,plot)
useDynLib(mineMS2)