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NEWS.md

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ggtangle 0.0.6

  • update DESCRIPTION to add citation (2024-12-17, Tue)
    • G Yu (2018) doi:10.1093/molbev/msy194
  • allows using layout name (e.g., 'nicely', 'kk') as in 'ggraph' (2024-12-13, Fri)

ggtangle 0.0.5

  • allows color_edge = "category" to color edges based on the category information in cnetplot() (2024-11-29, Fri)
  • update cnetplot() to address issues (2024-11-15, Fri)
  • update vignette to add a session of cnetplot() (2024-11-06, Wed)
  • 'node_label' can be a vector of selected items/genes to specify the items displayed in cnetplot() (2024-11-06, Wed)
    • if options(cnetplot_subset = TRUE), all the edges and nodes of the genes that are not wanted to labeled will be remove
  • geom_cnet_label() allows detail adjustment of cnetplot() labels (2024-11-06, Wed)
  • 'node_label' in cnetplot() supports new arguments (2024-11-05, Tue)
    • 'exclusive' to label genes that is uniquely belong to categories
    • 'share' to label genes that are shared between categories
    • expresson, like '> 1' or '< 1', to label those genes with foldChange > 1 or foldChange < 1
    • YuLab-SMU/enrichplot#253

ggtangle 0.0.4

  • compatible with more igraph layouts (2024-10-29, Tue)

ggtangle 0.0.3

  • drag_network() from 'enrichplot' (2024-10-24, Thu)
  • cnetplot() method for 'list' (2024-10-24, Thu)
  • re-export ggfun::td_filter() and ggplot2::geom_point()

ggtangle 0.0.2

  • geom_edge() layer to draw network (2024-08-28, Wed)
  • extend ggplot() to support 'igraph' object (2024-08-28, Wed)