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BUG: the score is different between json and tsv when weight_model=='s' #29

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zhuying412 opened this issue Mar 1, 2022 · 1 comment

zhuying412 commented Mar 1, 2022 •

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when weight_model=='s'

json: in lib/json_format.py, the score is gene_ID[j]][1]/highest_score

gene_info_dict[gene_dict[gene_ID[j]][0]] = {'Rank':str(rank_ave) , 'gene_id':str(gene_ID[j]),'score':str( float(gene_dict[gene_ID[j]][1]/highest_score)), 'status':gene_dict[gene_ID[j]][2]}

tsv: in lib/output.py, the score is gene_dict[gene_symbols[j]][1]

output_file.write(str(rank_ave) + "\t" + gene_dict[gene_symbols[j]][0] + "\t" + str(gene_dict[gene_symbols[j]][-1]) + "\t" + str( gene_dict[gene_symbols[j]][1]  ) + "\t" + gene_dict[gene_symbols[j]][2] + "\n" )

one has highest_score, another not.
I think it's a bug.

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zhuying412 commented Mar 1, 2022

by the way, what's the phen2gene's relationship with phen2gene2?

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