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option to over-ride same srcName error? #2

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sorrywm opened this issue May 30, 2019 · 0 comments
Open

option to over-ride same srcName error? #2

sorrywm opened this issue May 30, 2019 · 0 comments

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@sorrywm
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sorrywm commented May 30, 2019

I am trying to use maf_parse to split a maf generated from a hal, which has some blocks where the same source sequence is included multiple times. Is there any way to over-ride the check in maf_block for unique names? I'd be happy to get an output file with multiple sequences with the same name. Here is the relevant error:
ERROR: mafBlock has two alignments with same srcName (repeated_sequence_name)
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