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nextflow.config
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process.beforeScript = 'source $HOME/.bashrc'
nextflow.enable.dsl=1
conda.enabled = true
params {
src = "/home/ec2-user/src"
genome = null
// output
outdir = "/shared_drive_hy/out/17112023"
publishdir = "${params.outdir}/results"
infodir = "${params.outdir}/pipeline_info"
}
trace {
enabled = true
file = "${params.infodir}/trace.txt"
trace.overwrite = true
}
timeline {
enabled = true
file = "${params.infodir}/timeline.html"
timeline.overwrite = true
}
docker {
enabled = true
runOptions = '--user root'
}
dag {
enabled = true
file = "${params.infodir}/dag.pdf"
}
report {
enabled = true
file = "${params.infodir}/report.html"
report.overwrite = true
}
profiles {
local {
process.executor = 'local'
}
acrc {
process.executor = 'slurm'
}
}