diff --git a/dev/.documenter-siteinfo.json b/dev/.documenter-siteinfo.json
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--- a/dev/.documenter-siteinfo.json
+++ b/dev/.documenter-siteinfo.json
@@ -1 +1 @@
-{"documenter":{"julia_version":"1.9.4","generation_timestamp":"2023-12-25T00:33:53","documenter_version":"1.2.1"}}
\ No newline at end of file
+{"documenter":{"julia_version":"1.10.0","generation_timestamp":"2024-01-01T06:14:58","documenter_version":"1.2.1"}}
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diff --git a/dev/api/index.html b/dev/api/index.html
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-API documentation · SBMLToolkit.jl ReactionSystem(model::SBML.Model; kwargs...)Create a ReactionSystem from an SBML.Model.
See also ODESystem
source ODESystem(model::SBML.Model; include_zero_odes = true, kwargs...)Create an ODESystem from an SBML.Model.
See also ReactionSystem
source DefaultImporter to use in conjunction with readSBML
source ODESystemImporter to use in conjunction with readSBML
source ReactionSystemImporter to use in conjunction with readSBML
source readSBML(sbmlfile::String, ::DefaultImporter)Create a SBML.Model from an SBML file, using the default import settings for use as Catalyst and ModelingToolkit types.
See also ModelDefaultImporter
source readSBML(sbmlfile::String, ::ODESystemImporter)Create a ModelingToolkit.ODESystem from an SBML file, using the default import settings.
See also ModelODESystemImporter
source readSBML(sbmlfile::String, ::ReactionSystemImporter)Create a Catalyst.ReactionSystem from an SBML file, using the default import settings.
See also ModelReactionSystemImporter
source checksupport_file(filename::String)Check if SBML file is supported by SBMLToolkit.jl.
source checksupport_string(filename::String)Check if SBML passed as string is supported by SBMLToolkit.jl.
source
Theme
documenter-light documenter-dark Automatic (OS)
This document was generated with Documenter.jl version 1.2.1 on Monday 25 December 2023 . Using Julia version 1.9.4.
API documentation · SBMLToolkit.jl ReactionSystem(model::SBML.Model; kwargs...)Create a ReactionSystem from an SBML.Model.
See also ODESystem
source ODESystem(model::SBML.Model; include_zero_odes = true, kwargs...)Create an ODESystem from an SBML.Model.
See also ReactionSystem
source DefaultImporter to use in conjunction with readSBML
source ODESystemImporter to use in conjunction with readSBML
source ReactionSystemImporter to use in conjunction with readSBML
source readSBML(sbmlfile::String, ::DefaultImporter)Create a SBML.Model from an SBML file, using the default import settings for use as Catalyst and ModelingToolkit types.
See also ModelDefaultImporter
source readSBML(sbmlfile::String, ::ODESystemImporter)Create a ModelingToolkit.ODESystem from an SBML file, using the default import settings.
See also ModelODESystemImporter
source readSBML(sbmlfile::String, ::ReactionSystemImporter)Create a Catalyst.ReactionSystem from an SBML file, using the default import settings.
See also ModelReactionSystemImporter
source checksupport_file(filename::String)Check if SBML file is supported by SBMLToolkit.jl.
source checksupport_string(filename::String)Check if SBML passed as string is supported by SBMLToolkit.jl.
source
Theme
documenter-light documenter-dark Automatic (OS)
This document was generated with Documenter.jl version 1.2.1 on Monday 1 January 2024 . Using Julia version 1.10.0.
The package is released under the MIT license .
This package was developed by Paul F. Lang at the University of Oxford, UK and Anand Jain at the University of Chicago, USA.
Please use GitHub issues, the #sciml-sysbio channel in the Julia Slack workspace or email Paul F. Lang or Anand Jain with any questions or comments.
The documentation of this SciML package was built using these direct dependencies, Status `~/work/SBMLToolkit.jl/SBMLToolkit.jl/docs/Project.toml`
[e30172f5] Documenter v1.2.1
- [86080e66] SBMLToolkit v0.1.25 `~/work/SBMLToolkit.jl/SBMLToolkit.jl`and using this machine and Julia version. Julia Version 1.9.4
-Commit 8e5136fa297 (2023-11-14 08:46 UTC)
+ [86080e66] SBMLToolkit v0.1.25 `~/work/SBMLToolkit.jl/SBMLToolkit.jl`and using this machine and Julia version. Julia Version 1.10.0
+Commit 3120989f39b (2023-12-25 18:01 UTC)
Build Info:
Official https://julialang.org/ release
Platform Info:
@@ -25,9 +25,9 @@
CPU: 4 × AMD EPYC 7763 64-Core Processor
WORD_SIZE: 64
LIBM: libopenlibm
- LLVM: libLLVM-14.0.6 (ORCJIT, znver3)
+ LLVM: libLLVM-15.0.7 (ORCJIT, znver3)
Threads: 1 on 4 virtual coresA more complete overview of all dependencies and their versions is also provided. Status `~/work/SBMLToolkit.jl/SBMLToolkit.jl/docs/Manifest.toml`
- [47edcb42] ADTypes v0.2.5
+ [47edcb42] ADTypes v0.2.6
[a4c015fc] ANSIColoredPrinters v0.0.1
[c3fe647b] AbstractAlgebra v0.34.7
[1520ce14] AbstractTrees v0.4.4
@@ -56,8 +56,8 @@
[9a962f9c] DataAPI v1.15.0
[864edb3b] DataStructures v0.18.15
[e2d170a0] DataValueInterfaces v1.0.0
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[163ba53b] DiffResults v1.1.0
[b552c78f] DiffRules v1.15.1
[b4f34e82] Distances v0.10.11
@@ -75,7 +75,7 @@
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[29a986be] FastLapackInterface v2.0.0
[1a297f60] FillArrays v1.9.3
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[59287772] Formatting v0.4.2
[f6369f11] ForwardDiff v0.10.36
[069b7b12] FunctionWrappers v1.1.3
@@ -112,7 +112,7 @@
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[5078a376] LazyArrays v1.8.3
[d3d80556] LineSearches v7.2.0
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[2ab3a3ac] LogExpFunctions v0.3.26
[bdcacae8] LoopVectorization v0.12.166
[d8e11817] MLStyle v0.4.17
@@ -122,17 +122,17 @@
[a3b82374] MatrixFactorizations v2.1.0
[bb5d69b7] MaybeInplace v0.1.1
[e1d29d7a] Missings v1.1.0
- [961ee093] ModelingToolkit v8.74.1
+ [961ee093] ModelingToolkit v8.75.0
[46d2c3a1] MuladdMacro v0.2.4
[102ac46a] MultivariatePolynomials v0.5.3
[d8a4904e] MutableArithmetics v1.4.0
[d41bc354] NLSolversBase v7.8.3
[2774e3e8] NLsolve v4.5.1
[77ba4419] NaNMath v1.0.2
- [8913a72c] NonlinearSolve v3.3.0
+ [8913a72c] NonlinearSolve v3.4.0
[6fe1bfb0] OffsetArrays v1.13.0
[bac558e1] OrderedCollections v1.6.3
- [1dea7af3] OrdinaryDiffEq v6.64.0
+ [1dea7af3] OrdinaryDiffEq v6.66.0
[90014a1f] PDMats v0.11.31
[65ce6f38] PackageExtensionCompat v1.0.2
[d96e819e] Parameters v0.12.3
@@ -140,7 +140,7 @@
[e409e4f3] PoissonRandom v0.4.4
[f517fe37] Polyester v0.7.9
[1d0040c9] PolyesterWeave v0.2.1
- [d236fae5] PreallocationTools v0.4.13
+ [d236fae5] PreallocationTools v0.4.16
[aea7be01] PrecompileTools v1.2.0
[21216c6a] Preferences v1.4.1
[08abe8d2] PrettyTables v2.3.1
@@ -149,7 +149,7 @@
[fb686558] RandomExtensions v0.4.4
[e6cf234a] RandomNumbers v1.5.3
[3cdcf5f2] RecipesBase v1.3.4
- [731186ca] RecursiveArrayTools v3.2.6
+ [731186ca] RecursiveArrayTools v3.3.3
[f2c3362d] RecursiveFactorization v0.2.21
[189a3867] Reexport v1.2.2
[2792f1a3] RegistryInstances v0.1.0
@@ -161,13 +161,13 @@
[fdea26ae] SIMD v3.4.6
[94e857df] SIMDTypes v0.1.0
[476501e8] SLEEFPirates v0.6.42
- [0bca4576] SciMLBase v2.11.6
+ [0bca4576] SciMLBase v2.15.0
[c0aeaf25] SciMLOperators v0.3.7
[efcf1570] Setfield v1.1.1
- [727e6d20] SimpleNonlinearSolve v1.0.3
+ [727e6d20] SimpleNonlinearSolve v1.2.0
[699a6c99] SimpleTraits v0.9.4
[ce78b400] SimpleUnPack v1.1.0
- [a2af1166] SortingAlgorithms v1.2.0
+ [a2af1166] SortingAlgorithms v1.2.1
[47a9eef4] SparseDiffTools v2.15.0
[e56a9233] Sparspak v0.3.9
[276daf66] SpecialFunctions v2.3.1
@@ -180,9 +180,9 @@
[4c63d2b9] StatsFuns v1.3.0
[7792a7ef] StrideArraysCore v0.5.2
[892a3eda] StringManipulation v0.3.4
- [2efcf032] SymbolicIndexingInterface v0.3.0
+ [2efcf032] SymbolicIndexingInterface v0.3.1
[d1185830] SymbolicUtils v1.5.0
- [0c5d862f] Symbolics v5.13.0
+ [0c5d862f] Symbolics v5.14.1
[3783bdb8] TableTraits v1.0.1
[bd369af6] Tables v1.11.1
[8290d209] ThreadingUtilities v0.5.2
@@ -225,7 +225,7 @@
[d6f4376e] Markdown
[a63ad114] Mmap
[ca575930] NetworkOptions v1.2.0
- [44cfe95a] Pkg v1.9.2
+ [44cfe95a] Pkg v1.10.0
[de0858da] Printf
[3fa0cd96] REPL
[9a3f8284] Random
@@ -233,25 +233,26 @@
[9e88b42a] Serialization
[1a1011a3] SharedArrays
[6462fe0b] Sockets
- [2f01184e] SparseArrays
- [10745b16] Statistics v1.9.0
+ [2f01184e] SparseArrays v1.10.0
+ [10745b16] Statistics v1.10.0
[4607b0f0] SuiteSparse
[fa267f1f] TOML v1.0.3
[a4e569a6] Tar v1.10.0
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
- [e66e0078] CompilerSupportLibraries_jll v1.0.5+0
+ [e66e0078] CompilerSupportLibraries_jll v1.0.5+1
[deac9b47] LibCURL_jll v8.4.0+0
+ [e37daf67] LibGit2_jll v1.6.4+0
[29816b5a] LibSSH2_jll v1.11.0+1
- [c8ffd9c3] MbedTLS_jll v2.28.2+0
- [14a3606d] MozillaCACerts_jll v2022.10.11
- [4536629a] OpenBLAS_jll v0.3.21+4
- [05823500] OpenLibm_jll v0.8.1+0
- [efcefdf7] PCRE2_jll v10.42.0+0
- [bea87d4a] SuiteSparse_jll v5.10.1+6
- [83775a58] Zlib_jll v1.2.13+0
- [8e850b90] libblastrampoline_jll v5.8.0+0
+ [c8ffd9c3] MbedTLS_jll v2.28.2+1
+ [14a3606d] MozillaCACerts_jll v2023.1.10
+ [4536629a] OpenBLAS_jll v0.3.23+2
+ [05823500] OpenLibm_jll v0.8.1+2
+ [efcefdf7] PCRE2_jll v10.42.0+1
+ [bea87d4a] SuiteSparse_jll v7.2.1+1
+ [83775a58] Zlib_jll v1.2.13+1
+ [8e850b90] libblastrampoline_jll v5.8.0+1
[8e850ede] nghttp2_jll v1.52.0+1
- [3f19e933] p7zip_jll v17.4.0+0
-Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`You can also download the manifest file and the project file.
Theme
documenter-light documenter-dark Automatic (OS)
This document was generated with Documenter.jl version 1.2.1 on Monday 25 December 2023 . Using Julia version 1.9.4.