From 51df77388bc2ccd92030f59b733fdc65d2ac2a92 Mon Sep 17 00:00:00 2001
From: "Joseph Caracappa (NOAA)"
 <57966543+jcaracappa1@users.noreply.github.com>
Date: Fri, 23 Aug 2024 15:49:12 -0400
Subject: [PATCH] fixed wrong species attribution

---
 R/process_atl_output.R | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/R/process_atl_output.R b/R/process_atl_output.R
index a49cb4e..6942e3d 100644
--- a/R/process_atl_output.R
+++ b/R/process_atl_output.R
@@ -817,7 +817,7 @@ process_atl_output = function(param.dir,
     s=1
     for(s in 1:nrow(fgs)){
 
-      spp.vars = grep(paste0('^',fgs$Code[s]),catch.varname,value =T)
+      spp.vars = grep(paste0('^',fgs$Code[s],'_'),catch.varname,value =T)
 
       if(length(spp.vars) == 0){next()}