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SI.tex
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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% This is a (brief) model paper using the achemso class
%% The document class accepts keyval options, which should include
%% the target journal and optionally the manuscript type.
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\documentclass[journal=jctcce,manuscript=article,layout=singlecolumn]{achemso}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% Place any additional packages needed here. Only include packages
%% which are essential, to avoid problems later.
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\usepackage{chemformula} % Formula subscripts using \ch{}
\usepackage[T1]{fontenc} % Use modern font encodings
\usepackage{epstopdf}
\usepackage{multirow}
\usepackage{adjustbox}
\usepackage{float}
\usepackage{placeins}
\usepackage{easy-todo}
\usepackage{verbatim}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% If issues arise when submitting your manuscript, you may want to
%% un-comment the next line. This provides information on the
%% version of every file you have used.
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%\listfiles
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% Place any additional macros here. Please use \newcommand* where
%% possible, and avoid layout-changing macros (which are not used
%% when typesetting).
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\newcommand*\mycommand[1]{\texttt{\emph{#1}}}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% Meta-data block
%% ---------------
%% Each author should be given as a separate \author command.
%%
%% Corresponding authors should have an e-mail given after the author
%% name as an \email command. Phone and fax numbers can be given
%% using \phone and \fax, respectively; this information is optional.
%%
%% The affiliation of authors is given after the authors; each
%% \affiliation command applies to all preceding authors not already
%% assigned an affiliation.
%%
%% The affiliation takes an option argument for the short name. This
%% will typically be something like "University of Somewhere".
%%
%% The \altaffiliation macro should be used for new address, etc.
%% On the other hand, \alsoaffiliation is used on a per author basis
%% when authors are associated with multiple institutions.
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\author{Hanne S. Antila}
\affiliation{Department of Theory and Bio-Systems, Max Planck Institute of Colloids and Interfaces, 14476 Potsdam, Germany}
\alsoaffiliation{Department of Biomedicine, University of Bergen, 5020 Bergen, Norway}
\email{[email protected]}
\author{Sneha Dixit}
\affiliation{Department of Theory and Bio-Systems, Max Planck Institute of Colloids and Interfaces, 14476 Potsdam, Germany}
\author{Batuhan Kav}
\affiliation{Forschungszentrum Juelich, Germany}
\email{[email protected]}
\author{Jesper J. Madsen}
\affiliation{Department of Molecular Medicine, Morsani College of Medicine, University of South Florida, Tampa, Florida 33612, United States of America}
\alsoaffiliation{Center for Global Health and Infectious Diseases Research, Global and Planetary Health, College of Public Health, University of South Florida, Tampa, Florida 33612, United States of America}
\author{Markus S. Miettinen}
\author{O. H. Samuli Ollila}
\affiliation{VTT Technical Research Centre of Finland, Espoo, Finland}
\alsoaffiliation{Institute of Biotechnology, University of Helsinki, Helsinki, Finland}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% The document title should be given as usual. Some journals require
%% a running title from the author: this should be supplied as an
%% optional argument to \title.
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%\title[An \textsf{achemso} demo]
% {A demonstration of the \textsf{achemso} \LaTeX\
% class\footnote{A footnote for the title}}
%\title{NMRLipids VI: Polarizable Force Fields}
%\title{Do explicitly polarizable force fields give better description of biomembranes?}
%\title{Comparison of polarizable lipid models to high-resolution experimental data reveals room for improvement}
%\title{Benchmarking polarizable lipid force field}
\title{Supplementary Information: Evaluation of polarizable biomembrane simulations against experiments}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% Some journals require a list of abbreviations or keywords to be
%% supplied. These should be set up here, and will be printed after
%% the title and author information, if needed.
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%\abbreviations{IR,NMR,UV}
%\keywords{American Chemical Society, \LaTeX}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% The manuscript does not need to include \maketitle, which is
%% executed automatically.
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\begin{document}
\renewcommand{\thefigure}{S\arabic{figure}}
\setcounter{figure}{0}
\begin{figure}[!h]
\centering
%\includegraphics{Figures/order_parameters.png}
\includegraphics[width=0.8\textwidth]{Figures/quality_Drude2023_replicas.pdf}
\caption{Comparison of different replicas from CHARMM-Drude2023 simulations against experimental X-ray scattering form factors and C-H bond order parameters from the NMRlipids databank.}
\label{fig:order_parameters_replicas}
\end{figure}
\begin{figure}[!hbt]
\centering
\includegraphics{Figures/dihedral_distributions_without_ions.eps}
\caption{The distributions of the torsion angles for the head group atoms. For each torsion angle, the upper and lower rows contain the DOPC (AMOEBA) - POPC (Drude/Drude2023) and POPE lipids, respectively.}
\label{fig:dihedral_no_salt}
\end{figure}
\end{document}