diff --git a/pages/containers.qmd b/pages/containers.qmd index 284fd073..e0f30883 100644 --- a/pages/containers.qmd +++ b/pages/containers.qmd @@ -194,7 +194,7 @@ curl -o NCTC8325.fa.gz ftp://ftp.ensemblgenomes.org/pub/bacteria/release-37/fast gunzip -c NCTC8325.fa.gz > tempfile ``` -To download and prepare the input for Bowtie2. +to download and prepare the input for Bowtie2. Now try running the following Bash code: @@ -329,7 +329,10 @@ Next up is: SHELL ["/bin/bash", "-c"] ``` -`SHELL` sets the default shell to use i the container. The `SHELL` instruction has to be written in the `["executable", "parameters"]` syntax, which is referred to as "JSON form". Here we set `SHELL` to the `bash` shell (the `-c` flag is used to pass a command to the shell). +`SHELL` sets the default shell to use in the container. The `SHELL` instruction +has to be written in the `["executable", "parameters"]` syntax, which is +referred to as "JSON form". Here we set `SHELL` to the `bash` shell (the `-c` +flag is used to pass a command to the shell). The next few lines introduce the important `RUN` instruction, which is used for executing shell commands: