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Single end data fail to normalize #59

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amcooksey opened this issue Apr 18, 2023 · 0 comments
Open

Single end data fail to normalize #59

amcooksey opened this issue Apr 18, 2023 · 0 comments
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@mpoelchau

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@amcooksey
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RNAseq_annotate.py throws this error for single end data:

Normalizing ...
Traceback (most recent call last):
File "/opt/RNA_repo/rnannot/RNAseq_annotate.py", line 394, in
with open(fname, 'r') as infile:
FileNotFoundError: [Errno 2] No such file or directory: '/project/nal_genomics/amanda.cooksey/rnaseq_schgre/2023-04-18-17-41-30/SRR17978912/normalized.fastq'
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@mpoelchau @amcooksey