From fc2949285451f0fe14456572c5eb09bc2e5fd642 Mon Sep 17 00:00:00 2001
From: unknown <carsen.stringer@gmail.com>
Date: Tue, 29 Oct 2024 10:24:08 -0400
Subject: [PATCH] updating docs

---
 docs/api.rst       | 2 ++
 docs/benchmark.rst | 9 ++++-----
 docs/settings.rst  | 6 ++++--
 3 files changed, 10 insertions(+), 7 deletions(-)

diff --git a/docs/api.rst b/docs/api.rst
index 8f87c927..6ae97b20 100644
--- a/docs/api.rst
+++ b/docs/api.rst
@@ -9,6 +9,8 @@ Cellpose class
 .. autoclass:: cellpose.models.Cellpose
    :members:
 
+.. _cpmclass:
+
 CellposeModel
 ~~~~~~~~~~~~~~~~~~
 
diff --git a/docs/benchmark.rst b/docs/benchmark.rst
index d2dba1a9..ee0a9e3c 100644
--- a/docs/benchmark.rst
+++ b/docs/benchmark.rst
@@ -2,9 +2,8 @@ Timing + memory usage
 ------------------------------------
 
 The algorithm runtime and memory usage increases with the data size. The runtimes 
-shown below are for a single image run for the first time on an A100 with a batch_size of 32 
- - this timing includes warm-up of GPU, thus runtimes 
-will be faster for subsequent images. It will also be faster if you run many images of the same size 
+shown below are for a single image run once on an A100 with a batch_size of 32.
+This timing includes warm-up of GPU, thus runtimes will be faster for subsequent images. It will also be faster if you run many images of the same size 
 input as an array into Cellpose with a large batch_size. The runtimes will also be 
 slightly faster if you have fewer cells/cell pixels.
 
@@ -14,12 +13,12 @@ slightly faster if you have fewer cells/cell pixels.
 Table for 2D:
 
 .. image:: https://www.cellpose.org/static/images/benchmark_2d.png
-    :width: 400
+    :width: 800
 
 Table for 3D:
 
 .. image:: https://www.cellpose.org/static/images/benchmark_3d.png
-    :width: 400
+    :width: 800
 
 If you are running out of GPU memory for your images, you can reduce the 
 ``batch_size`` parameter in the ``model.eval`` function or in the CLI (default is 8).
diff --git a/docs/settings.rst b/docs/settings.rst
index 955373a2..d5fc567c 100644
--- a/docs/settings.rst
+++ b/docs/settings.rst
@@ -4,11 +4,13 @@ Settings
 --------------------------
 
 The important settings are described on this page. 
-See the :ref:`cpclass` for all run options.
+See the :ref:`cpmclass` for all run options.
 
 Here is an example of calling the Cellpose class and
 running a list of images for reference:
-::code-block::
+
+::
+
     from cellpose import models
     from cellpose.io import imread