From d49c159887b90c646e39bb10e312d1a31ec767ea Mon Sep 17 00:00:00 2001
From: Lily Wang <lily@mdanalysis.org>
Date: Wed, 1 Nov 2023 22:25:48 +1100
Subject: [PATCH] moved tools to pyproject

---
 {{cookiecutter.repo_name}}/pyproject.toml | 23 ++++++++++++++
 {{cookiecutter.repo_name}}/setup.cfg      | 37 +----------------------
 2 files changed, 24 insertions(+), 36 deletions(-)

diff --git a/{{cookiecutter.repo_name}}/pyproject.toml b/{{cookiecutter.repo_name}}/pyproject.toml
index 4cdf1d7f..c224ca96 100644
--- a/{{cookiecutter.repo_name}}/pyproject.toml
+++ b/{{cookiecutter.repo_name}}/pyproject.toml
@@ -67,3 +67,26 @@ match = ["*"]
 distance = "{base_version}+{distance}.{vcs}{rev}"
 dirty = "{base_version}+{distance}.{vcs}{rev}.dirty"
 distance-dirty = "{base_version}+{distance}.{vcs}{rev}.dirty"
+
+[tool.coverage.run]
+omit = [
+    # Omit the tests
+    "*/tests/*",
+]
+
+[tool.coverage.report]
+exclude_also = [
+    "if TYPE_CHECKING:",
+]
+
+[tool.isort]
+multi_line_output = 3
+include_trailing_comma = true
+force_grid_wrap = 0
+use_parentheses = true
+line_length = 80
+
+[tool.yapf]
+COLUMN_LIMIT = 80
+INDENT_WIDTH = 4
+USE_TABS = false
diff --git a/{{cookiecutter.repo_name}}/setup.cfg b/{{cookiecutter.repo_name}}/setup.cfg
index df14af4b..3dab725a 100644
--- a/{{cookiecutter.repo_name}}/setup.cfg
+++ b/{{cookiecutter.repo_name}}/setup.cfg
@@ -1,41 +1,6 @@
 # Helper file to handle all configs
 
-[coverage:run]
-# .coveragerc to control coverage.py and pytest-cov
-omit =
-    # Omit the tests
-    */tests/*
-
-[coverage:report]
-exclude_also =
-    if TYPE_CHECKING:
-
-[isort]
-multi_line_output = 3
-include_trailing_comma = True
-force_grid_wrap = 0
-use_parentheses = True
-line_length = 80
-
-
-[yapf]
-# YAPF, in .style.yapf files this shows up as "[style]" header
-COLUMN_LIMIT = 80
-INDENT_WIDTH = 4
-USE_TABS = False
-
 [flake8]
 # Flake8, PyFlakes, etc
+# flake8 does not support pyproject.toml currently
 max-line-length = 80
-
-[aliases]
-test = pytest
-
-[tool:pytest]
-testpaths = {{cookiecutter.repo_name}}/tests
-
-[build_sphinx]
-all-files = 1
-source-dir = docs/
-build-dir = docs/_build
-warning-is-error = 1