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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(CalculateDensities)
export(LEEF_1_biomass_bemovi_16)
export(LEEF_1_biomass_bemovi_25)
export(LEEF_1_biomass_bemovi_25_cropped)
export(LEEF_1_biomass_bemovi_25_non_cropped)
export(LEEF_1_biomass_flowcam)
export(LEEF_1_biomass_flowcytometer)
export(LEEF_2_add_experiment_tables)
export(LEEF_2_biomass_bemovi)
export(LEEF_2_biomass_flowcam)
export(LEEF_2_classify_bemovi_archive)
export(LEEF_2_classify_bemovi_files)
export(LEEF_2_classify_flowcam_archive)
export(LEEF_2_classify_flowcam_files)
export(LEEF_2_density_flowcytometer_archive)
export(LEEF_2_extract_traits_flowcytometer_archive)
export(LEEF_2_make_view_density)
export(LEEF_2_make_view_o2)
export(LEEF_2_make_view_toc)
export(LEEF_2_plot_bottles_per_timestamp)
export(LEEF_2_plot_conductivity_per_bottle_per_timestamp)
export(LEEF_2_plot_density_species_per_bottle_per_timestamp)
export(LEEF_2_plot_flowcytometer_individual_per_bottle_per_timestamp)
export(LEEF_2_plot_o2s_per_bottle_per_timestamp)
export(LEEF_2_plot_response_incubator)
export(LEEF_2_plot_tocs_per_bottle_per_timestamp)
export(LEEF_2_rename_composition)
export(LEEF_2_rename_species)
export(LEEF_2_rename_species_prob_columns)
export(LEEF_2_rename_toc)
export(LEEF_2_report_diagnostic)
export(RRD_LEEF_1_rename)
export(RRD_create_indices)
export(RRD_new)
export(SetNotFoundSpeciesTo0)
export(add_experiment_tables)
export(add_extracted_csv_to_db)
export(add_reclassified_to_db)
export(add_to_db)
export(arrow_read_conductivity)
export(arrow_read_density)
export(arrow_read_o2)
export(arrow_read_table)
export(arrow_read_toc)
export(classify_bemovi_archive)
export(classify_bemovi_files)
export(classify_flowcam_archive)
export(classify_flowcam_files)
export(configs)
export(create_rrd_trimmed)
export(db_disconnect)
export(db_read_conductivity)
export(db_read_density)
export(db_read_immigration)
export(db_read_light_decline)
export(db_read_o2)
export(db_read_stressor_levels)
export(db_read_table)
export(db_read_toc)
export(density_flowcytometer_archive)
export(extract_timestamps)
export(extract_traits_flowcytometer_archive)
export(generate_overlays)
export(make_view_conductivity)
export(make_view_density)
export(make_view_immigration_event)
export(make_view_light_decline)
export(make_view_o2)
export(make_view_toc)
export(make_views)
export(object_to_parquet)
export(overlays)
export(overlays_from_folders)
export(overlays_from_reclassification)
export(parquet_add_bemovi_16)
export(parquet_add_bemovi_25)
export(parquet_add_bemovi_25_cropped)
export(parquet_add_conductivity)
export(parquet_add_flowcam)
export(parquet_add_flowcytometer)
export(parquet_add_manualcount)
export(parquet_add_o2)
export(parquet_add_toc)
export(plot_bottles_per_timestamp)
export(plot_density_species_per_bottle_per_timestamp)
export(plot_no_species_per_bottle_per_timestamp)
export(plot_o2s_per_bottle_per_timestamp)
export(plot_response_incubator)
export(plot_species_per_timestamp_per_measure)
export(plot_tocs_per_bottle_per_timestamp)
export(prepare_rrd)
export(read_sql)
export(report_diagnostic)
export(report_flowcytometer)
export(report_interactive)
export(report_reclassification)
export(report_sanity_check)
export(sanity_check)
export(sanity_check_bemovi.mag.16)
export(sanity_check_bemovi.mag.25)
export(sanity_check_flowcam)
export(sanity_check_flowcytometer)
export(sanity_check_general.data)
export(sanity_check_manualcount)
export(sanity_check_o2meter)
export(sanity_get_timestamp)
export(species_set)
export(traits_flowcytometer_archive)
import(data.table)
import(dbplyr)
import(ggplot2)
importFrom(DBI,dbBegin)
importFrom(DBI,dbCommit)
importFrom(DBI,dbConnect)
importFrom(DBI,dbDisconnect)
importFrom(DBI,dbExecute)
importFrom(DBI,dbGetQuery)
importFrom(DBI,dbListTables)
importFrom(DBI,dbWriteTable)
importFrom(RSQLite,SQLITE_RO)
importFrom(RSQLite,SQLite)
importFrom(arrow,open_dataset)
importFrom(dplyr,collect)
importFrom(dplyr,distinct)
importFrom(dplyr,filter)
importFrom(dplyr,full_join)
importFrom(dplyr,group_by)
importFrom(dplyr,mutate)
importFrom(dplyr,n)
importFrom(dplyr,relocate)
importFrom(dplyr,rename)
importFrom(dplyr,select)
importFrom(dplyr,summarise)
importFrom(dplyr,summarize)
importFrom(dplyr,tbl)
importFrom(dplyr,ungroup)
importFrom(magrittr,"%>%")
importFrom(parallel,mclapply)
importFrom(parquetize,write_parquet_at_once)
importFrom(pbapply,pblapply)
importFrom(pbapply,pbsapply)
importFrom(pbmcapply,pbmclapply)
importFrom(quarto,quarto_render)
importFrom(rlang,"!!")
importFrom(rmarkdown,render)
importFrom(rmarkdown,run)
importFrom(stats,na.omit)
importFrom(tibble,as_tibble)
importFrom(utils,browseURL)
importFrom(utils,read.csv)
importFrom(utils,read.table)
importFrom(yaml,read_yaml)
importFrom(yaml,write_yaml)