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Fix CodeCov.io #154

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hahnd opened this issue Jun 18, 2021 · 1 comment
Open

Fix CodeCov.io #154

hahnd opened this issue Jun 18, 2021 · 1 comment
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@hahnd

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hahnd commented Jun 18, 2021

The code coverage reports have stopped working. The problem needs to be determined and fixed.
@hahnd hahnd added this to the OBS - Jun 2021 milestone Jun 18, 2021
@hahnd hahnd self-assigned this Jun 18, 2021
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hahnd commented Jun 18, 2021

Logs from CodeBuild:

Relevant:

rootdir: /codebuild/output/src113601444/src/github.com/JCSDA-internal/FSOI/python   eebc6062-a756-4306-b4de-37235a87ef1d
collected 8 items   eebc6062-a756-4306-b4de-37235a87ef1d
  eebc6062-a756-4306-b4de-37235a87ef1d
test_datastore.py ... [ 37%]   eebc6062-a756-4306-b4de-37235a87ef1d
test_fortran_format.py . [ 50%]   eebc6062-a756-4306-b4de-37235a87ef1d
test_plots.py . [ 62%]   eebc6062-a756-4306-b4de-37235a87ef1d
test_request_handler.py ... [100%]   eebc6062-a756-4306-b4de-37235a87ef1d

Phase complete: BUILD State: SUCCEEDED eebc6062-a756-4306-b4de-37235a87ef1d
Entering phase POST_BUILD eebc6062-a756-4306-b4de-37235a87ef1d
Running command curl -s https://codecov.io/bash > codecov_temp.sh eebc6062-a756-4306-b4de-37235a87ef1d
eebc6062-a756-4306-b4de-37235a87ef1d
Running command /bin/bash ./codecov_temp.sh -t 597948f4-60e9-4791-abb5-ec207f5ab60a -f python/test/coverage.xml -R $CODEBUILD_SRC_DIR eebc6062-a756-4306-b4de-37235a87ef1d
^[[0;31m-^[[0m file not found at python/test/coverage.xml eebc6062-a756-4306-b4de-37235a87ef1d
^[[0;31m-->^[[0m No coverage data found.

Full Logs:

Waiting for agent ping eebc6062-a756-4306-b4de-37235a87ef1d
Waiting for DOWNLOAD_SOURCE eebc6062-a756-4306-b4de-37235a87ef1d
Phase is DOWNLOAD_SOURCE eebc6062-a756-4306-b4de-37235a87ef1d
CODEBUILD_SRC_DIR=/codebuild/output/src113601444/src/github.com/JCSDA-internal/FSOI eebc6062-a756-4306-b4de-37235a87ef1d
YAML location is /codebuild/output/src113601444/src/github.com/JCSDA-internal/FSOI/buildspec.yml eebc6062-a756-4306-b4de-37235a87ef1d
Processing environment variables eebc6062-a756-4306-b4de-37235a87ef1d
Moving to directory /codebuild/output/src113601444/src/github.com/JCSDA-internal/FSOI eebc6062-a756-4306-b4de-37235a87ef1d
Registering with agent eebc6062-a756-4306-b4de-37235a87ef1d
Phases found in YAML: 3 eebc6062-a756-4306-b4de-37235a87ef1d
INSTALL: 1 commands eebc6062-a756-4306-b4de-37235a87ef1d
BUILD: 5 commands eebc6062-a756-4306-b4de-37235a87ef1d
POST_BUILD: 7 commands eebc6062-a756-4306-b4de-37235a87ef1d
Phase complete: DOWNLOAD_SOURCE State: SUCCEEDED eebc6062-a756-4306-b4de-37235a87ef1d
Phase context status code: Message: eebc6062-a756-4306-b4de-37235a87ef1d
Entering phase INSTALL eebc6062-a756-4306-b4de-37235a87ef1d
Running command echo install stage eebc6062-a756-4306-b4de-37235a87ef1d
install stage eebc6062-a756-4306-b4de-37235a87ef1d
eebc6062-a756-4306-b4de-37235a87ef1d
Phase complete: INSTALL State: SUCCEEDED eebc6062-a756-4306-b4de-37235a87ef1d
Phase context status code: Message: eebc6062-a756-4306-b4de-37235a87ef1d
Entering phase PRE_BUILD eebc6062-a756-4306-b4de-37235a87ef1d
Phase complete: PRE_BUILD State: SUCCEEDED eebc6062-a756-4306-b4de-37235a87ef1d
Phase context status code: Message: eebc6062-a756-4306-b4de-37235a87ef1d
Entering phase BUILD eebc6062-a756-4306-b4de-37235a87ef1d
Running command echo build_stage eebc6062-a756-4306-b4de-37235a87ef1d
build_stage eebc6062-a756-4306-b4de-37235a87ef1d
eebc6062-a756-4306-b4de-37235a87ef1d
Running command source ~/.bashrc eebc6062-a756-4306-b4de-37235a87ef1d
eebc6062-a756-4306-b4de-37235a87ef1d
Running command ls -l /opt/python/bin/pylint eebc6062-a756-4306-b4de-37235a87ef1d
-rwxr-xr-x 1 root root 229 May 1 2020 /opt/python/bin/pylint eebc6062-a756-4306-b4de-37235a87ef1d
eebc6062-a756-4306-b4de-37235a87ef1d
Running command bash build/check_python.sh eebc6062-a756-4306-b4de-37235a87ef1d
Passed. eebc6062-a756-4306-b4de-37235a87ef1d
eebc6062-a756-4306-b4de-37235a87ef1d
Running command bash build/test_python.sh eebc6062-a756-4306-b4de-37235a87ef1d
============================= test session starts ============================== eebc6062-a756-4306-b4de-37235a87ef1d
platform linux -- Python 3.8.3rc1, pytest-5.4.1, py-1.8.1, pluggy-0.13.1 eebc6062-a756-4306-b4de-37235a87ef1d
rootdir: /codebuild/output/src113601444/src/github.com/JCSDA-internal/FSOI/python eebc6062-a756-4306-b4de-37235a87ef1d
collected 8 items eebc6062-a756-4306-b4de-37235a87ef1d
eebc6062-a756-4306-b4de-37235a87ef1d
test_datastore.py ... [ 37%] eebc6062-a756-4306-b4de-37235a87ef1d
test_fortran_format.py . [ 50%] eebc6062-a756-4306-b4de-37235a87ef1d
test_plots.py . [ 62%] eebc6062-a756-4306-b4de-37235a87ef1d
test_request_handler.py ... [100%] eebc6062-a756-4306-b4de-37235a87ef1d
eebc6062-a756-4306-b4de-37235a87ef1d
=============================== warnings summary =============================== eebc6062-a756-4306-b4de-37235a87ef1d
/codebuild/output/src113601444/src/github.com/JCSDA-internal/FSOI/python/src/fsoi/data/s3_datastore.py:482 eebc6062-a756-4306-b4de-37235a87ef1d
/codebuild/output/src113601444/src/github.com/JCSDA-internal/FSOI/python/src/fsoi/data/s3_datastore.py:482: SyntaxWarning: "is not" with a literal. Did you mean "!="? eebc6062-a756-4306-b4de-37235a87ef1d
data_type = descriptor['type'] + ('.' if descriptor['type'] is not '' else '') eebc6062-a756-4306-b4de-37235a87ef1d
eebc6062-a756-4306-b4de-37235a87ef1d
test/test_datastore.py::test_s3_datastore eebc6062-a756-4306-b4de-37235a87ef1d
/codebuild/output/src113601444/src/github.com/JCSDA-internal/FSOI/python/src/fsoi/data/s3_datastore.py:409: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead eebc6062-a756-4306-b4de-37235a87ef1d
log.warn('Trying to delete a non-existant target: s3://%s/%s' % (bucket, key)) eebc6062-a756-4306-b4de-37235a87ef1d
eebc6062-a756-4306-b4de-37235a87ef1d
test/test_fortran_format.py::test_compare_fortran_format_readers eebc6062-a756-4306-b4de-37235a87ef1d
/codebuild/output/src113601444/src/github.com/JCSDA-internal/FSOI/python/test/test_fortran_format.py:16: YAMLLoadWarning: calling yaml.load() without Loader=... is deprecated, as the default Loader is unsafe. Please read https://msg.pyyaml.org/load for full details. eebc6062-a756-4306-b4de-37235a87ef1d
data = yaml.load(open('../test_resources/nrl_sample_input_data.yaml')) eebc6062-a756-4306-b4de-37235a87ef1d
eebc6062-a756-4306-b4de-37235a87ef1d
test/test_request_handler.py::test_pass_requests eebc6062-a756-4306-b4de-37235a87ef1d
/codebuild/output/src113601444/src/github.com/JCSDA-internal/FSOI/python/src/fsoi/stats/lib_obimpact.py:718: RuntimeWarning: divide by zero encountered in log10 eebc6062-a756-4306-b4de-37235a87ef1d
lmin = np.log10(cmin) eebc6062-a756-4306-b4de-37235a87ef1d
eebc6062-a756-4306-b4de-37235a87ef1d
-- Docs: https://docs.pytest.org/en/latest/warnings.html eebc6062-a756-4306-b4de-37235a87ef1d
================== 8 passed, 4 warnings in 625.24s (0:10:25) =================== eebc6062-a756-4306-b4de-37235a87ef1d
/codebuild/output/src113601444/src/github.com/JCSDA-internal/FSOI/python/src/fsoi/data/s3_datastore.py:482: SyntaxWarning: "is not" with a literal. Did you mean "!="? eebc6062-a756-4306-b4de-37235a87ef1d
data_type = descriptor['type'] + ('.' if descriptor['type'] is not '' else '') eebc6062-a756-4306-b4de-37235a87ef1d
No source for code: '/codebuild/output/src113601444/src/github.com/JCSDA-internal/FSOI/python/test/fakesource'. eebc6062-a756-4306-b4de-37235a87ef1d
Aborting report output, consider using -i. eebc6062-a756-4306-b4de-37235a87ef1d
/codebuild/output/src113601444/src/github.com/JCSDA-internal/FSOI/python/src/fsoi/data/s3_datastore.py:482: SyntaxWarning: "is not" with a literal. Did you mean "!="? eebc6062-a756-4306-b4de-37235a87ef1d
data_type = descriptor['type'] + ('.' if descriptor['type'] is not '' else '') eebc6062-a756-4306-b4de-37235a87ef1d
No source for code: '/codebuild/output/src113601444/src/github.com/JCSDA-internal/FSOI/python/test/fakesource'. eebc6062-a756-4306-b4de-37235a87ef1d
Aborting report output, consider using -i. eebc6062-a756-4306-b4de-37235a87ef1d
eebc6062-a756-4306-b4de-37235a87ef1d
Phase complete: BUILD State: SUCCEEDED eebc6062-a756-4306-b4de-37235a87ef1d
Phase context status code: Message: eebc6062-a756-4306-b4de-37235a87ef1d
Entering phase POST_BUILD eebc6062-a756-4306-b4de-37235a87ef1d
Running command echo post_build stage eebc6062-a756-4306-b4de-37235a87ef1d
post_build stage eebc6062-a756-4306-b4de-37235a87ef1d
eebc6062-a756-4306-b4de-37235a87ef1d
Running command curl -s https://codecov.io/bash > codecov_temp.sh eebc6062-a756-4306-b4de-37235a87ef1d
eebc6062-a756-4306-b4de-37235a87ef1d
Running command /bin/bash ./codecov_temp.sh -t 597948f4-60e9-4791-abb5-ec207f5ab60a -f python/test/coverage.xml -R $CODEBUILD_SRC_DIR eebc6062-a756-4306-b4de-37235a87ef1d
eebc6062-a756-4306-b4de-37235a87ef1d
_____ _ eebc6062-a756-4306-b4de-37235a87ef1d
/ | | | eebc6062-a756-4306-b4de-37235a87ef1d
| | ___ __| | ___ ___ _____ __ eebc6062-a756-4306-b4de-37235a87ef1d
| | / _ \ / ` |/ _ / / _ \ \ / / eebc6062-a756-4306-b4de-37235a87ef1d
| || () | (| | __/ (| () \ V / eebc6062-a756-4306-b4de-37235a87ef1d
_____/ _,|_|____/ _/ eebc6062-a756-4306-b4de-37235a87ef1d
Bash-1.0.3 eebc6062-a756-4306-b4de-37235a87ef1d
eebc6062-a756-4306-b4de-37235a87ef1d
eebc6062-a756-4306-b4de-37235a87ef1d
^[[0;36m==>^[[0m git version 2.18.2 found eebc6062-a756-4306-b4de-37235a87ef1d
^[[0;36m==>^[[0m curl 7.61.1 (x86_64-redhat-linux-gnu) libcurl/7.61.1 OpenSSL/1.1.1c zlib/1.2.11 nghttp2/1.33.0 eebc6062-a756-4306-b4de-37235a87ef1d
Release-Date: 2018-09-05 eebc6062-a756-4306-b4de-37235a87ef1d
Protocols: dict file ftp ftps gopher http https imap imaps pop3 pop3s rtsp smb smbs smtp smtps telnet tftp eebc6062-a756-4306-b4de-37235a87ef1d
Features: AsynchDNS IPv6 Largefile GSS-API Kerberos SPNEGO NTLM NTLM_WB SSL libz TLS-SRP HTTP2 UnixSockets HTTPS-proxy Metalink eebc6062-a756-4306-b4de-37235a87ef1d
^[[0;90m==>^[[0m AWS Codebuild detected. eebc6062-a756-4306-b4de-37235a87ef1d
^[[0;90mproject root:^[[0m /codebuild/output/src113601444/src/github.com/JCSDA-internal/FSOI eebc6062-a756-4306-b4de-37235a87ef1d
^[[0;90mYaml found at:^[[0m codecov.yml eebc6062-a756-4306-b4de-37235a87ef1d
^[[0;90m->^[[0m Found 1 reports eebc6062-a756-4306-b4de-37235a87ef1d
^[[0;90m==>^[[0m Detecting git/mercurial file structure eebc6062-a756-4306-b4de-37235a87ef1d
^[[0;90m==>^[[0m Reading reports eebc6062-a756-4306-b4de-37235a87ef1d
^[[0;31m-^[[0m file not found at python/test/coverage.xml eebc6062-a756-4306-b4de-37235a87ef1d
^[[0;31m-->^[[0m No coverage data found.

@fabiolrdiniz fabiolrdiniz removed this from the OBS - Jul 2021 milestone Mar 10, 2022
@climbfuji climbfuji removed the OBS2 label Feb 16, 2023
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