JavaImageToMatlab.m

function [C] = JavaImageToMatlab(javaImage)

 % Copyright (C) 2013-2014 University of Dundee & Open Microscopy Environment.
 % All rights reserved.
 % 
 % This program is free software; you can redistribute it and/or modify
 % it under the terms of the GNU General Public License as published by
 % the Free Software Foundation; either version 2 of the License, or
 % (at your option) any later version.
 % 
 % This program is distributed in the hope that it will be useful,
 % but WITHOUT ANY WARRANTY; without even the implied warranty of
 % MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
 % GNU General Public License for more details.
 % 
 % You should have received a copy of the GNU General Public License along
 % with this program; if not, write to the Free Software Foundation, Inc.,
 % 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.

H = javaImage.getHeight;
W = javaImage.getWidth;
C=uint8(zeros([H,W,3]));
B= javaImage.getData.getPixels(0,0,W,H,[]);
bidx = 1;
for i=1:H
    for j=1:W
        C(i,j,:)=B(bidx:(bidx+2));
        bidx=bidx+3;
    end
end