21 November 2023
- Drop support for Python 3.7 (Adrien Berchet - #84)
- Remove some warnings (Adrien Berchet - #86)
- Plot improvements (lidakanari - #76)
16 May 2023
- Files with upper-case extensions can be loaded (Adrien Berchet - #78)
28 April 2023
- Update from Copier template (Adrien Berchet - #73)
- Fix license detection (Adrien Berchet - #59)
- Fix citation section and add CITATION.cff file (Adrien Berchet - #58)
- Fix pylint config (Adrien Berchet - #57)
- Fix RTD (Adrien Berchet - #56)
- Make (x/y)lims and (x/y)lim consistent in plot functions (Adrien Berchet - #69)
- Apply copier template (Adrien Berchet - #55)
- Handle default kwargs (Adrien Berchet - #67)
- Use Py37 with precommit (Adrien Berchet - #72)
- Fix title in commitlint job (Adrien Berchet - #70)
- Store tests results as artifacts (Adrien Berchet - #66)
- Fix tests, bump Github actions and add get_by_name method to Population (Adrien Berchet - #64)
- Fix action to publish new releases on Pypi (Adrien Berchet - #53)
- Add new plotting functions to create overview figures for papers (lidakanari - #63)
- Fix load_population to be able to load single files and to raise a proper exception (Adrien Berchet - #54)
22 August 2022
- Update to dendrite types (Alexis Arnaudon - #52)
- Updated copyright year in several files (alex4200 - #51)
9 March 2022
- Add trunk length feature (Adrien Berchet - #44)
- Use points instead of diameters for MorphIO conversion (Adrien Berchet - #47)
- Add missed coverage (Eleftherios Zisis - #49)
- Refactor tests to use pytest & remove warnings (Eleftherios Zisis - #48)
- Improve perf of find_apical_point_distance_smoothed (Adrien Berchet - #46)
- Add tracking of points for bars (lidakanari - #43)
- Fix license (Adrien Berchet - #42)
18 March 2021
- bump morphio version (Alexis Arnaudon - #41)
16 March 2021
- remove enum compat (Alexis Arnaudon - #40)
- Move morphio loader to io module (lidakanari - #38)
- Convert morphio Morphology to tmd Neuron (Eleftherios Zisis - #37)
- Refactor Topology methods (Eleftherios Zisis - #36)
- Create run-tox.yml (Alexis Arnaudon - #34)
- Create publish-sdist.yml (Alexis Arnaudon - #35)
- lint fixes + improvement of some older code (Alexis Arnaudon - #32)
27 April 2020
- new_axes=False + soma outline fix (Alexis Arnaudon - #30)
20 March 2020
- Add apical point function (lidakanari - #29)
11 February 2020
11 February 2020
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check if .asc files as input (Alexis Arnaudon - #24)
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Update enum (kanari - 795a277)
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automate version update with releases (kanari - ceb7437)
17 January 2020
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Version increase (lidakanari - #23)
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Improve apical point definition (lidakanari - #22)
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Move all tests in a single directory (Benoit Coste - #19)
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Fix path distances consistency (lidakanari - #15)
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Updated Tutorial.txt (lidakanari - #12)
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Generalize population loader to accept list of files as input (lidakanari - #6)
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Activate tox envs (Benoît Coste - 3774d12)
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Fixes for review (kanari - 433470e)
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Fix tests, activate tests for p27, pylint, pep8 (kanari - 7d4f427)
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This doesn't work (kanari - 010e53c)
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Fix xrange for python 3 (kanari - 202354a)
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Update Tutorial.txt (lidakanari - 530ed57)
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Changed get_ph_diagram to get_persistence_diagram (Stanislav Schmidt - 8d8c952)
3 March 2019
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Fix incopatibility with python3 (lidakanari - #11)
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Deploy on each commit (Eleftherios Zisis - #9)
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Implementation of closest barcode function (Eleftherios Zisis - 076ba9e)
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review corrections (Eleftherios Zisis - ea9c93c)
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Minor corrections (kanari - 23d9dd2)
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lint corrections (Eleftherios Zisis - 3903168)
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Docstring clarification (Eleftherios Zisis - c2955ff)
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removed commented code (Eleftherios Zisis - bfc3494)
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import view should be import tmd.view as view (Oren Amsalem - 3f9a04d)
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Revert deploy on each commit (Benoît Coste - c3e41f8)
16 January 2019
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Test fix Jenkins (Benoit Coste - #2)
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Add Travis and Pypi integration (Benoit Coste - #1)
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Cleaning up code (kanari - 7705675)
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Fix remaining pylint, pep8 issues (kanari - 8d809c3)
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Further cleaning and removing unused functions (kanari - 5da070b)
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Add basic functionality (kanari - 6f3af7c)
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Minor modifications to basic functionality. Improve visualization. (kanari - a5c52de)
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Add appropriate license for open sourcing (Lida Kanari - b9b3776)
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Fixing final pylinting issues; (kanari - e5dfc6e)
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Correct pep8 (kanari - 56dca21)
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Optimize path_distance computation: use path_distances_2 (kanari - b42c5de)
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Add pypi integration (Benoît Coste - 6ef1ff4)
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Add apical point definition (kanari - 58b8b3c)
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Cleaning up and README update (Lida Kanari - 7975fe2)
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Readme corrections (Lida Kanari - b702757)
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Update README.md (lidakanari - 8996afc)
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Update README.md (lidakanari - f3a01ea)
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Update README.md (lidakanari - f4aee95)
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tmd/Topology/transformations.py (kanari - bfccd1b)
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Make viewers optional (kanari - 8a87f84)
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Minor corrections (kanari - 2f0dc5b)
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More attempts on readme (Lida Kanari - 051af30)
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Update Travis secret (Benoît Coste - ffc1cff)
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Fix minor issue with apical distance definition" (kanari - 04f5dfa)
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missing _neuron in load command (nadavyayon - 50a1584)
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Update README.md (lidakanari - b6e0ea8)
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Bump version (Benoît Coste - 7fb11db)
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fix docs (Benoît Coste - 159ad93)
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Update README.md (lidakanari - 3bb4534)
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Update README.md (lidakanari - 8cc1bfa)
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Rename LICENSE.txt to LICENSE.md (lidakanari - 22757f6)
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More attempts on readme (Lida Kanari - bf1f36c)
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Transfer Readme file (Lida Kanari - 1102051)
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Merge "Bump version" (Lida Kanari - 87b66a7)
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Merge "fix docs" (Lida Kanari - 11e00a2)
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Migrating code from bitbucket (Lida Kanari - 01be170)
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Add Tox file (Benoit Coste - 69333fb)
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Cleaning up code to simplify applications (kanari - 2f8a80b)
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Add examples and minor changes (kanari - ab560ae)
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Clean up pep n pylint errors (Lida Kanari - 7e9f6b8)
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Add matching with munkress (kanari - 2dbe26b)
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Improvements and new plots (kanari - f3e34ad)
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Commit statistics as examples (kanari - f9cca06)
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Simplify matchings (kanari - 544e6fd)
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Add example to classify one cell against a population of cells (kanari - e878a91)
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Average PI (kanari - 273b92b)
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Add simple doc and remove unnecessary directories (Lida Kanari - df48cc6)
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Minor corrections (Lida Kanari - 823df3d)
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Add polar plots code and example (kanari - 942fce0)
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Add version number in TMD installation (Benoit Coste - c414aa2)
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Update viewers (Lida Kanari - d5ad47a)
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Correct plotting functions (Lida Kanari - 5cf0b10)
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Update matching options (Lida Kanari - d4d6cb3)
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Add properties to Neuron, Population (Lida Kanari - 5380fd9)
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Change the neurite_types inside a population to make consistent with neuron types (kanari - 57b7e70)
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Add examples and view (kanari - 8178c8e)
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Minor updates on viewers (Lida Kanari - 4230592)
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Improve matching (kanari - d9463f3)
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Minor plotting improvements (Lida Kanari - ef3d5c0)
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Replace pep8 (Lida Kanari - 8ea0ccc)
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Allow optional definition of soma type (kanari - f4cd02d)
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Minor simplification (Lida Kanari - 1252b86)
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Fix fail error message in population loader (kanari - 353f767)
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Update makefile (Lida Kanari - dd502e3)
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Fix error in previous commit (Lida Kanari - ccb6db1)
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Data to check in h5 format (Lida Kanari - a724985)
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Initial empty repository (Julien Francioli - 3ce483e)