create_endpoint.yaml

name: Create Hub Ingest Endpoint

on:
  workflow_dispatch:
    inputs:
      username:
        description: 'Username for the endpoint'
        required: true
        type: string
      size:
        description: 'Storage size (e.g., 50Gi)'
        required: true
        type: string

env:
  BIOC_HUBSINGEST_PATH: "${{ github.workspace }}"

jobs:
  create-endpoint:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v4
      
      - name: save kubeconfig
        shell: bash
        run: mkdir -p ~/.kube && echo "${{ secrets.KUBECONFIG }}" > ~/.kube/config
      
      - name: Install Kubectl
        run: |
          curl -LO "https://storage.googleapis.com/kubernetes-release/release/$(curl -s https://storage.googleapis.com/kubernetes-release/release/stable.txt)/bin/linux/amd64/kubectl" && \
          chmod +x ./kubectl && \
          sudo mv ./kubectl /usr/local/bin/kubectl && \
          kubectl version
      
      - name: Set up environment
        run: |
          USERNAME_UPPER=$(echo "${{ inputs.username }}" | tr '[:lower:]' '[:upper:]')
          echo "SECRET_NAME=S3KEY_${USERNAME_UPPER}" >> $GITHUB_ENV
      
      - name: Create endpoint then test
        run: |
          bash install_hubsingest.sh
          export PATH="$PATH:$BIOC_HUBSINGEST_PATH"
          hubsingest create_endpoint "${{ inputs.username }}" "${{ inputs.size }}" ${{ secrets[env.SECRET_NAME] }}
          kubectl wait -n "${{ inputs.username }}-ns" --for=condition=ready pod -l app=versitygw --timeout=300s
          kubectl wait -n "${{ inputs.username }}-ns" --for=condition=ready certificate ${{ inputs.username }}-hubsingest-bioconductor-org-key --timeout=600s || bash scripts/reset_endpoint.sh "${{ inputs.username }}" && kubectl wait -n "${{ inputs.username }}-ns" --for=condition=ready certificate ${{ inputs.username }}-hubsingest-bioconductor-org-key --timeout=600s
          hubsingest test_endpoint "${{ inputs.username }}"