conda or docker ?!

[tischi]

@BioinfoTongLI

Why are there both conda and docker?

[BioinfoTongLI]

theoretically you need to declare all the different containerisations that you want to use there in the process definition.
It is only at runtime you decide which method you want to use.
You can do that by either editing the nextflow.config file
docker.enabled = true
or by adding flags in the CLI -with-docker.
In either of these case, conda will be ommitted.