add second dataset

[tischi]

@bugraoezdemir could you please also add this data?

https://github.com/NEUBIAS/training-resources/blob/master/image_data/xy_8bit__nuclei_PLK1_inhibition.tif

[bugraoezdemir]

I have added it to the develop branch

[BioinfoTongLI]

Hi @bugraoezdemir thanks for this!
I am seeing this error:

  Traceback (most recent call last):
    File "/lustre/scratch126/cellgen/team283/tl10/ome-zarr-image-analysis-nextflow/bin/blur.py", line 69, in <module>
      main(args)
    File "/lustre/scratch126/cellgen/team283/tl10/ome-zarr-image-analysis-nextflow/bin/blur.py", line 16, in main
      r = Reader(parse_url(args.input, mode="r"))
    File "/usr/local/lib/python3.10/site-packages/ome_zarr/reader.py", line 620, in __init__
      assert zarr.exists()
  AttributeError: 'NoneType' object has no attribute 'exists'

and I cannot see the .zattrs or .zgroup. I assume they are missing?

[bugraoezdemir]

Hi @BioinfoTongLI , I guess it was because I dragged & dropped the folder and the hidden files were not uploaded. I have fixed it now.

[BioinfoTongLI]

thanks @bugraoezdemir ! I can confirm it's all good now!
Shall I close this for now? @tischi
I am also interested in HCS plates. Do you think we should add dummy examples here?