Some Surveys have values or 0s for num and num_cpue when they should have NA

[zoekitchel]

Some surveys have values or 0s for num when they should have NA (aka no data exist, not that 0 were found).

Specifically:

• GMEX
• GOA
• NEUS
• AI
• DFO (HS, QCS, SOG, WCHG, WCVI)
• SEUS
• WCANN
• WCTRI

[zoekitchel]

This issue was created in step where duplicate observations were removed (line 189 in ai_clean.R). I didn't realize that the output of sum(c(NA,NA,NA,NA,NA,NA,NA), na.rm = T) is 0, and not NA.

[zoekitchel]

I have updated the code, files in FishGlob_data/outputs/Cleaned_data (SURVEY_data.Rdata) and cleaned google drive files (SURVEY_data.csv).

[zoekitchel]

Unfortunately, the standardization code for the NEUS would never run fully for me after multiple attempts, so the neus_std_clean.Rdata file in the repository has NOT yet been updated. This still needs to be done.

[AquaAuma]

is NEUS the only code that needs an update? I can try next week

[AquaAuma]

is this fixed @zoekitchel ? Because we didn't run again the compile function to make the entire dataset available, and some people are using the previous version of the data